[Bioperl-l] Next BioPerl release

Fields, Christopher J cjfields at illinois.edu
Wed Feb 6 19:54:58 UTC 2013


On Feb 6, 2013, at 1:36 PM, Siddhartha Basu <sidd.basu at gmail.com>
 wrote:

> Hi, 
> 
> On Tue, 05 Feb 2013, Fields, Christopher J wrote:
> 
>> All,
>> 
>> I am scheduling the next BioPerl CPAN release tentatively for March 1.  Any help in triaging bug reports would be greatly appreciated!  
>> 
>> Amongst all other changes, as mentioned in a separate thread we will remove Bio::FeatureIO, now developed in a separate repository:
>> 
>>    https://github.com/bioperl/Bio-FeatureIO
>> 
>> Feedback, suggestions, etc are greatly appreciated.
> 
> Here are CI build report on 5.12, 5.14 and 5.16 using travis. 
> https://api.travis-ci.org/jobs/4623997/log.txt?deansi=true
> https://api.travis-ci.org/jobs/4623998/log.txt?deansi=true
> https://api.travis-ci.org/jobs/4623999/log.txt?deansi=true
> 
> Could not get 5.10 to work on travis. Though i activated the (--network)
> option,  it still didn't run one of the test that needs network. Also, initially got
> confused by the fact that though it has dist.ini,  the tests still has
> to run through Build.PL. Running **dzil test** do not work.
> 
> Hope this helps.
> 
> thanks, 
> -siddhartha

Just to point out, that was for Bio-FeatureIO.  Truthfully I'm not worried about that one yet; got to get over Mt. Everest first (the main release).  

Build.PL is there mainly as a convenience for users w/o Dist::Zilla, which, last I recall, had a higher dependency list than even BioPerl (though I may be mistaken).  I'll probably have to set up a Build.PL that can be clobbered by Dist::Zilla as needed.  Or we can just get rid of it and insist that dev. code has to be added via 'use lib' or PERL5LIB, and not allow installation.

chris



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