[Bioperl-l] Problem rendering a BLAST result

Kevin Brown Kevin.M.Brown at asu.edu
Tue May 10 20:55:34 UTC 2011


Would help if we can see your code as line 68 of yeah.pl is the final
line of the script you linked.

It is trying to set the bgcolor based on a value that it thinks should
be held in the Bio::SeqFeature::Generic object as a tag, but no such tag
exists.

> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of lthiberiol
> Sent: Tuesday, May 10, 2011 6:21 AM
> To: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Problem rendering a BLAST result
> 
> Hi...
> 
> I've been trying to parse a BLAST output and generate a figure based
> on it's result. I'm using this example (http://www.bioperl.org/wiki/
> HOWTO:Graphics#Parsing_Real_BLAST_Output), but when I execute it i get
> the following error message:
> 
> ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: asking for tag value that does not exist bgcolor
> STACK: Error::throw
> STACK: Bio::Root::Root::throw /usr/local/share/perl/5.10.1/Bio/Root/
> Root.pm:368
> STACK: Bio::SeqFeature::Generic::get_tag_values /usr/local/share/perl/
> 5.10.1/Bio/SeqFeature/Generic.pm:517
> STACK: Bio::Graphics::Glyph::bgcolor /usr/local/share/perl/5.10.1/Bio/
> Graphics/Glyph.pm:703
> STACK: Bio::Graphics::Glyph::graded_segments::bgcolor
/usr/local/share/
> perl/5.10.1/Bio/Graphics/Glyph/graded_segments.pm:124
> STACK: Bio::Graphics::Glyph::graded_segments::draw /usr/local/share/
> perl/5.10.1/Bio/Graphics/Glyph/graded_segments.pm:59
> STACK: Bio::Graphics::Glyph::track::draw /usr/local/share/perl/5.10.1/
> Bio/Graphics/Glyph/track.pm:35
> STACK: Bio::Graphics::Panel::gd /usr/local/share/perl/5.10.1/Bio/
> Graphics/Panel.pm:588
> STACK: Bio::Graphics::Panel::png /usr/local/share/perl/5.10.1/Bio/
> Graphics/Panel.pm:1067
> STACK: yeah.pl:68
> -----------------------------------------------------------
> 
> Thanks!
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