[Bioperl-l] Bioperl module for simulated reads

Florent Angly florent.angly at gmail.com
Thu Jun 23 19:34:39 UTC 2011


Hi all,

I just wanted to let me know that, in the context of my program that 
generates simulated amplicon and shotgun datasets, Grinder 
(https://sourceforge.net/projects/biogrinder/files/biogrinder/), I 
developed a Bioperl module that facilitates taking simulated reads from 
a reference sequences. I called it Bio::Seq::SimulatedRead: 
https://github.com/bioperl/bioperl-live/blob/master/Bio/Seq/SimulatedRead.pm. 
I welcome testing and feedback!

Florent



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