[Bioperl-l] resources for read simulation?

[Florent Angly]

Hi Ross,

You could try Grinder: 
https://sourceforge.net/projects/biogrinder/files/biogrinder/
It uses BioPerl.

Florent


On 20/06/11 09:53, Ross KK Leung wrote:
> Is there any bioperl modules/programs that make short reads out of an input sequence file?
>
> e.g.
>
> input: a genome of 3Mb fasta file
> output: a read sequence fasta file with parameters:
> i) read length (either fixed, or in a range)
> ii) proportion of sampling (e.g. randomly select 30% coverage of the input file)
>
>
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