[Bioperl-l] Using BIO::SEARCHIO

Mark A. Jensen maj at fortinbras.us
Mon May 3 02:57:28 UTC 2010


you need to say "Bio::SearchIO", and not "BIO::SearchIO"
MAJ
----- Original Message ----- 
From: "Lakshmi Kastury" <skastu01 at students.poly.edu>
To: <bioperl-l at lists.open-bio.org>
Sent: Sunday, May 02, 2010 10:41 PM
Subject: [Bioperl-l] Using BIO::SEARCHIO


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> I am attempting to use the BIO::SEARCHIO system to parse a Blast output file.
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> A new instance is he file is read through the following:
> my $input = new BIO::SearchIO (-file =>'blast_report_0.txt', -format 
> =>'blast');
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> When I run my program, I receive the following message:
> "Can't locate object method "new" via package "BIO::SearchIO" (perhaps you 
> forgot to load "BIO::SearchIO"?
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> Is this an optional module which needs to be installed separately?
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> Thanks,
> Lakshmi Kastury
>
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