[Bioperl-l] aacomp.pl problem

[Dave Messina]

Hi Radwen,

The latest version of aacomp (from subversion) worked fine for me. That version has this line near the top of the script:

# $Id: aacomp.PLS 15088 2008-12-04 02:49:09Z bosborne $


If yours is different, you might try upgrading to the latest version.

In fact, I'm almost certain that is the problem, since the valid_aa method is in the Bio::SeqUtils class, not Bio::Tools::CodonTable.


Dave