[Bioperl-l] Res: How to do a megablast with Bioperl?

[Dave Messina]

Hi Rondon,

Please keep the list on the Cc so everyone can follow along.


> Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl?

Sorry, I read your last post too fast.

You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus:

http://www.bioperl.org/wiki/HOWTO:StandAloneBlast

http://bioperl.org/wiki/HOWTO:BlastPlus


Note that in blastplus, megablast is the default -task


Dave


PS — I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated?