[Bioperl-l] Bio::SeqFeature::Annotated migration branch
cjfields at illinois.edu
Sat Jun 5 22:38:05 EDT 2010
As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term.
However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons:
As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this:
If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list.
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