From j.stiller at uq.edu.au Tue Jun 1 04:03:48 2010 From: j.stiller at uq.edu.au (Jiri Stiller) Date: Tue, 01 Jun 2010 18:03:48 +1000 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation Message-ID: <1275379428.24468.20.camel@lafs-746g12s> Hi, I am trying to process bam file using Bio::Assembly::IO. I attached test script and output. When I am retrieving contigs I get correct contig number and position but contig objects build from reads of different orientation don't contain any read sequences. Contigs built from the reads of the same orientations are fine. Your help/advice would be greatly appreciated. Cheers, -- Jiri Stiller Senior Bioinformatics Researcher Australian Centre for Plant Functional Genomics School of Land, Crop and Food Sciences University of Queensland Brisbane QLD 4072 j.stiller at uq.edu.au Phone: +61 (0)7 3346 7082 Mobile: +61 (0) 422 941 581 Fax: +61 (0)7 3365 1177 -------------- next part -------------- There are [178] contigs in this assembly CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/101291-101366] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102051-102152] There are [2] sequences in this contig [TTATCTGCCAAAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCAC] HWI-EAS406:6:2:876:1541#0 1 1 76 102051 102126 [CGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATTTTTGTTATAACTAAAAATGAAA] HWI-EAS406:7:66:970:866#0 1 1 76 102077 102152 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102259-102375] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103339-103414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103503-103593] There are [2] sequences in this contig [CTTTGAATAGTGTTCCTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATT] HWI-EAS406:7:36:1651:564#0 1 1 76 103503 103578 [CTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAG] HWI-EAS406:7:42:1490:1464#0 1 1 76 103518 103593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103651-103995] There are [3] sequences in this contig [CTTTTGGGTGGTCTTACTTGCTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCT] HWI-EAS406:7:51:519:1517#0 1 1 76 103651 103726 [GATCTGAGCATCTCAGAAGCTTATATGGGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCT] HWI-EAS406:7:52:1269:1884#0 1 1 76 103714 103789 [CTCTTGCTGAAGACGAAGCAATGTGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGT] HWI-EAS406:7:100:1623:1160#0 1 1 76 103788 103863 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104002-104077] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104144-104254] There are [2] sequences in this contig [TTATGTTTTTTCTCTGAAGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCT] HWI-EAS406:6:92:1645:1627#0 1 1 76 104144 104219 [GGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAATACTACTCCTCTTCCTTGCGTTAT] HWI-EAS406:6:46:436:1967#0 1 1 76 104179 104254 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104756-104831] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105167-105268] There are [2] sequences in this contig [ATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTA] HWI-EAS406:6:62:249:1175#0 1 1 76 105167 105242 [AGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGC] HWI-EAS406:6:36:814:2018#0 1 1 76 105193 105268 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105380-105470] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106271-106439] There are [3] sequences in this contig [CTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAG] HWI-EAS406:6:93:583:1229#0 1 1 76 106271 106346 [GGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAG] HWI-EAS406:5:17:1458:1611#0 1 1 76 106308 106383 [TCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCTGATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAA] HWI-EAS406:5:57:727:683#0 1 1 76 106364 106439 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106808-106883] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/125-317] There are [5] sequences in this contig [AGGCCGTAGGAGACGGCGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAG] HWI-EAS406:6:81:1026:1375#0 1 1 76 125 200 [CGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAG] HWI-EAS406:7:99:74:1159#0 1 1 76 171 246 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:27:509:1087#0 1 1 76 176 251 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:85:844:610#0 1 1 76 176 251 [GCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAATTTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAG] HWI-EAS406:5:37:558:195#0 1 1 76 242 317 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/1282-1357] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13485-13560] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13574-13703] There are [2] sequences in this contig [TCTTGTTCTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTAC] HWI-EAS406:5:74:70:987#0 1 1 76 13574 13649 [TGTTGATGGTGGCCGAGTCTACAAGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTT] HWI-EAS406:5:63:987:1854#0 1 1 76 13628 13703 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13787-13898] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/14531-14606] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/15027-15102] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/17829-17904] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/18191-18266] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19049-19176] There are [4] sequences in this contig [ACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAACGCAAAGATGACAAA] HWI-EAS406:6:47:476:1809#0 1 1 76 19049 19124 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:5:55:902:1256#0 1 1 76 19099 19174 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:6:24:1105:1536#0 1 1 76 19099 19174 [AAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGT] HWI-EAS406:5:81:1045:1991#0 1 1 76 19101 19176 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19226-19381] There are [2] sequences in this contig [TGAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGG] HWI-EAS406:7:6:1755:615#0 1 1 76 19226 19301 [GAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGA] HWI-EAS406:7:29:1005:1120#0 1 1 76 19227 19302 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19682-19757] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19938-20081] There are [3] sequences in this contig [TTTCTCGGCCAGAAGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGAC] HWI-EAS406:5:76:1534:574#0 1 1 76 19938 20013 [TATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCG] HWI-EAS406:5:88:260:1266#0 1 1 76 19965 20040 [CTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAA] HWI-EAS406:6:68:1763:137#0 1 1 76 20006 20081 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20107-20288] There are [6] sequences in this contig [ATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATA] HWI-EAS406:7:86:946:878#0 1 1 76 20107 20182 [TGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTG] HWI-EAS406:6:47:1422:395#0 1 1 76 20128 20203 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:59:1710:1444#0 1 1 76 20205 20280 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:91:386:241#0 1 1 76 20205 20280 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:279:1687#0 1 1 76 20213 20288 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:280:1685#0 1 1 76 20213 20288 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/2023-2098] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20305-20414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20417-20492] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20848-20960] There are [2] sequences in this contig [TCAATCGGGTAAGAGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTT] HWI-EAS406:5:9:1771:746#0 1 1 76 20848 20923 [GAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCTGTGTTAT] HWI-EAS406:7:27:1692:1515#0 1 1 76 20862 20937 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20969-21057] There are [2] sequences in this contig [CCATTCGTGCTTGGTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTG] HWI-EAS406:7:25:261:426#0 1 1 76 20969 21044 [GTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCT] HWI-EAS406:6:34:1342:1525#0 1 1 76 20982 21057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21180-21271] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21281-21356] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23183-23315] There are [2] sequences in this contig [CCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAGAAATTAGTCAGAAGATCC] HWI-EAS406:6:16:1118:1937#0 1 1 76 23183 23258 [GAAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTAAGGGT] HWI-EAS406:7:99:295:294#0 1 1 76 23240 23315 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23397-23534] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/24257-24332] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26533-26608] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26627-26702] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27548-27700] There are [3] sequences in this contig [TTTGCTCACATTGTCTATGGTTTTAGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATG] HWI-EAS406:7:70:7:790#0 1 1 76 27548 27623 [AGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGC] HWI-EAS406:5:66:1045:865#0 1 1 76 27572 27647 [CCATGCCGCCAATGCCTAGCGGCGGCTCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACC] HWI-EAS406:7:11:1363:966#0 1 1 76 27625 27700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27740-28037] There are [5] sequences in this contig [TCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCCAATGGCTCCATCTTCAAGTCCAATG] HWI-EAS406:6:80:586:416#0 1 1 76 27740 27815 [CCCAAGTCCAGAAACAGTCCCTGATATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGA] HWI-EAS406:6:4:735:317#0 1 1 76 27836 27911 [CTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGGCCTCTCCAGA] HWI-EAS406:6:24:834:1604#0 1 1 76 27865 27940 [GACCCATGCCACCGGCAATGGCCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTT] HWI-EAS406:6:7:1577:1072#0 1 1 76 27910 27985 [AAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCATTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAG] HWI-EAS406:5:13:1479:1512#0 1 1 76 27962 28037 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/28046-28217] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29612-29737] There are [4] sequences in this contig [CTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGG] HWI-EAS406:6:40:287:1418#0 1 1 76 29617 29692 [CCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTT] HWI-EAS406:7:68:469:1690#0 1 1 76 29622 29697 [GCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAG] HWI-EAS406:6:52:609:1614#0 1 1 76 29645 29720 [ACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAA] HWI-EAS406:6:8:1095:1720#0 1 1 76 29662 29737 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29830-29950] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30300-30448] There are [2] sequences in this contig [GCATACTACTAGTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATA] HWI-EAS406:5:56:245:827#0 1 1 76 30300 30375 [ATACTTGACGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTA] HWI-EAS406:6:54:518:1635#0 1 1 76 30373 30448 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30513-30588] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30599-30674] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31131-31206] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31241-31316] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31740-31815] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31979-32209] There are [6] sequences in this contig [GGTAAATCTATTGTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTT] HWI-EAS406:5:36:280:195#0 1 1 76 31979 32054 [TTATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGG] HWI-EAS406:6:43:1362:96#0 1 1 76 32034 32109 [TATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGT] HWI-EAS406:5:20:1502:651#0 1 1 76 32035 32110 [TTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTG] HWI-EAS406:7:23:1380:514#0 1 1 76 32053 32128 [TTTAGAGTGATTGAGTGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAA] HWI-EAS406:6:2:1437:1250#0 1 1 76 32116 32191 [TGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTCAGTCTCTTA] HWI-EAS406:5:12:820:1835#0 1 1 76 32134 32209 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3201-3322] There are [3] sequences in this contig [ACATGACCCGAACCGAATCCGATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATC] HWI-EAS406:7:4:730:1881#0 1 1 76 3201 3276 [GAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCG] HWI-EAS406:5:24:1242:1707#0 1 1 76 3226 3301 [ACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCGAGAAGACCCGAACCGAGAATT] HWI-EAS406:7:93:1120:174#0 1 1 76 3247 3322 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/32214-33432] There are [37] sequences in this contig [GCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGA] HWI-EAS406:5:80:1511:419#0 1 1 76 32230 32305 [GCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAG] HWI-EAS406:7:1:1373:1308#0 1 1 76 32233 32308 [GAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCC] HWI-EAS406:5:4:716:332#0 1 1 76 32283 32358 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:35:950:2013#0 1 1 76 32295 32370 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:80:372:1536#0 1 1 76 32295 32370 [AGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGT] HWI-EAS406:6:48:889:1456#0 1 1 76 32296 32371 [GCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAG] HWI-EAS406:6:55:699:904#0 1 1 76 32320 32395 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:6:43:758:1706#0 1 1 76 32331 32406 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:7:23:801:958#0 1 1 76 32331 32406 [GAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAA] HWI-EAS406:5:40:1659:524#0 1 1 76 32359 32434 [AGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGA] HWI-EAS406:7:75:276:530#0 1 1 76 32366 32441 [TATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTA] HWI-EAS406:5:69:687:818#0 1 1 76 32403 32478 [TTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAG] HWI-EAS406:7:82:811:1711#0 1 1 76 32407 32482 [GTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCA] HWI-EAS406:6:18:728:1283#0 1 1 76 32409 32484 [TAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAA] HWI-EAS406:7:39:575:1279#0 1 1 76 32446 32521 [ATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTACTTCAAAAGC] HWI-EAS406:5:77:554:699#0 1 1 76 32484 32559 [TCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAG] HWI-EAS406:6:38:322:1075#0 1 1 76 32552 32627 [AAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGG] HWI-EAS406:6:4:1708:1127#0 1 1 76 32554 32629 [AAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAA] HWI-EAS406:6:96:313:366#0 1 1 76 32581 32656 [AGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTT] HWI-EAS406:7:24:1099:862#0 1 1 76 32594 32669 [TGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTC] HWI-EAS406:7:93:648:748#0 1 1 76 32596 32671 [AGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCCAGACGAAGATA] HWI-EAS406:7:36:1426:1766#0 1 1 76 32626 32701 [TGCCAGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGA] HWI-EAS406:6:7:1217:1949#0 1 1 76 32687 32762 [CCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCG] HWI-EAS406:7:16:1331:1702#0 1 1 76 32703 32778 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:5:49:1610:706#0 1 1 76 32740 32815 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:7:34:213:833#0 1 1 76 32740 32815 [CATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCAT] HWI-EAS406:5:66:1471:637#0 1 1 76 32742 32817 [GCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTGGGTTAGACTGCGGTGATTATC] HWI-EAS406:7:38:1290:397#0 1 1 76 32776 32851 [CCGCCGTGTCCAGATAGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATG] HWI-EAS406:6:48:1074:1154#0 1 1 76 32956 33031 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:6:1:315:1531#0 1 1 76 32994 33069 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:7:92:232:127#0 1 1 76 32994 33069 [ATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTA] HWI-EAS406:6:65:1385:736#0 1 1 76 33061 33136 [TTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAG] HWI-EAS406:7:64:152:1162#0 1 1 76 33091 33166 [GTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGCGCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGC] HWI-EAS406:6:47:1344:2015#0 1 1 76 33142 33217 [TTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAGACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCC] HWI-EAS406:5:53:181:602#0 1 1 76 33286 33361 [CAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTT] HWI-EAS406:5:82:1052:1943#0 1 1 76 33337 33412 [TGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTG] HWI-EAS406:7:45:1464:1655#0 1 1 76 33357 33432 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33440-33860] There are [12] sequences in this contig [AACAAAGGTACATGTATAAATGTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATT] HWI-EAS406:7:88:1428:1042#0 1 1 76 33440 33515 [GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCT] HWI-EAS406:7:3:1161:1283#0 1 1 76 33461 33536 [AGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGT] HWI-EAS406:7:7:1669:1770#0 1 1 76 33465 33540 [AGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAAC] HWI-EAS406:5:9:203:511#0 1 1 76 33471 33546 [AACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAACTATTGGTGAGCAAATT] HWI-EAS406:6:36:660:812#0 1 1 76 33487 33562 [TTGATGAGGAGCGAGAGTATGACCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAA] HWI-EAS406:7:94:1100:1480#0 1 1 76 33579 33654 [GAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGA] HWI-EAS406:6:38:327:576#0 1 1 76 33699 33774 [GGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATT] HWI-EAS406:6:64:1457:110#0 1 1 76 33701 33776 [GTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGA] HWI-EAS406:7:70:734:1923#0 1 1 76 33704 33779 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:5:38:1327:1329#0 1 1 76 33716 33791 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:7:58:1187:138#0 1 1 76 33716 33791 [GAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTG] HWI-EAS406:7:98:1611:696#0 1 1 76 33718 33793 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3373-3533] There are [2] sequences in this contig [CACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTT] HWI-EAS406:7:63:789:161#0 1 1 76 3373 3448 [CGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCA] HWI-EAS406:7:50:888:1103#0 1 1 76 3408 3483 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33872-34074] There are [5] sequences in this contig [AGCTCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAA] HWI-EAS406:6:61:1059:811#0 1 1 76 33872 33947 [TCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT] HWI-EAS406:7:37:209:1471#0 1 1 76 33875 33950 [AGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTTCTA] HWI-EAS406:7:51:467:1510#0 1 1 76 33878 33953 [CAGGCTAACTTCTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGAT] HWI-EAS406:6:23:1431:966#0 1 1 76 33940 34015 [GACAGTGGGACAATGATACATATGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGA] HWI-EAS406:6:37:467:1855#0 1 1 76 33999 34074 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/339-458] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34368-34443] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34773-34850] There are [2] sequences in this contig [TCTGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTA] HWI-EAS406:7:42:1652:1481#0 1 1 76 34773 34848 [TGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGA] HWI-EAS406:6:57:1235:1165#0 1 1 76 34775 34850 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/35200-35275] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3595-3703] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3722-3816] There are [2] sequences in this contig [AGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTG] HWI-EAS406:5:40:1484:49#0 1 1 76 3722 3797 [GTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTGGTCTGATACAATTTGGGCT] HWI-EAS406:6:54:632:1253#0 1 1 76 3741 3816 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38041-38163] There are [2] sequences in this contig [AAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGACAATATTGCTACCCACGGCTTAATAAAAGTTGCGTGT] HWI-EAS406:7:59:595:1702#0 1 1 76 38041 38116 [CTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGGTCTTAGACAAAGA] HWI-EAS406:6:45:1385:450#0 1 1 76 38088 38163 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38179-38348] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3933-4035] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/40492-40567] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/42571-42646] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43000-43120] There are [2] sequences in this contig [GCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGCATCCAGAACCCACGACAACTAATACTAGCCAA] HWI-EAS406:6:48:1107:1243#0 1 1 76 43007 43082 [ACCTGCATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG] HWI-EAS406:6:16:215:1613#0 1 1 76 43045 43120 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43213-43322] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43346-43459] There are [3] sequences in this contig [TCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAA] HWI-EAS406:5:61:1069:1184#0 1 1 76 43346 43421 [CCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATC] HWI-EAS406:7:30:1025:1208#0 1 1 76 43378 43453 [CGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTC] HWI-EAS406:6:91:366:235#0 1 1 76 43384 43459 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43804-43879] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43994-44071] There are [2] sequences in this contig [AGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGG] HWI-EAS406:5:67:352:1473#0 1 1 76 43994 44069 [GGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAG] HWI-EAS406:5:11:796:675#0 1 1 76 43996 44071 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44197-44354] There are [4] sequences in this contig [TAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGT] HWI-EAS406:7:78:1706:1488#0 1 1 76 44197 44272 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:5:40:1010:733#0 1 1 76 44238 44313 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:6:6:1380:1161#0 1 1 76 44238 44313 [GATTGCCTTGTGAGTCCCAATATGATCCTCGATTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGT] HWI-EAS406:6:39:1311:1899#0 1 1 76 44279 44354 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44386-44669] There are [2] sequences in this contig [GGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCTAGAAGTAAAAA] HWI-EAS406:5:8:579:1223#0 1 1 76 44386 44461 [CCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCATCACCCGACACATTA] HWI-EAS406:6:33:276:2024#0 1 1 76 44529 44604 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44736-44811] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/474-549] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48444-48600] There are [2] sequences in this contig [GTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGCCAAGCTAAG] HWI-EAS406:6:36:565:711#0 1 1 76 48444 48519 [TATAGACTGCCAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTT] HWI-EAS406:7:56:1561:265#0 1 1 76 48501 48576 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48653-49079] There are [10] sequences in this contig [ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAA] HWI-EAS406:5:10:337:1092#0 1 1 76 48721 48796 [AAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAA] HWI-EAS406:5:11:1385:2002#0 1 1 76 48757 48832 [TGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAA] HWI-EAS406:6:62:259:1312#0 1 1 76 48782 48857 [AGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATATGAATCAAATACCTGTCGATTTT] HWI-EAS406:7:33:1719:1816#0 1 1 76 48807 48882 [AATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGG] HWI-EAS406:5:17:1474:1143#0 1 1 76 48883 48958 [GCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCT] HWI-EAS406:7:33:65:1522#0 1 1 76 48890 48965 [CATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCT] HWI-EAS406:7:97:1691:1904#0 1 1 76 48897 48972 [TTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTA] HWI-EAS406:6:62:998:2004#0 1 1 76 48927 49002 [GTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTC] HWI-EAS406:7:41:1526:1040#0 1 1 76 48936 49011 [GCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTCACAATACTCTTCACAGCTGTGAGC] HWI-EAS406:5:63:1654:235#0 1 1 76 48960 49035 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49084-49976] There are [46] sequences in this contig [AGAGATATGAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAAC] HWI-EAS406:5:54:681:1708#0 1 1 76 49107 49182 [GAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCG] HWI-EAS406:7:30:1305:206#0 1 1 76 49115 49190 [TGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAACCGTATCTCT] HWI-EAS406:7:68:588:743#0 1 1 76 49145 49220 [GAACCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTCTGA] HWI-EAS406:5:60:1517:1629#0 1 1 76 49208 49283 [AGCCTGTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCC] HWI-EAS406:7:97:948:1532#0 1 1 76 49269 49344 [GTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAA] HWI-EAS406:7:53:1440:1060#0 1 1 76 49274 49349 [TCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGT] HWI-EAS406:5:68:1041:1314#0 1 1 76 49279 49354 [TCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGTGAGACGGTGGCGGTATGAGGGTTGCTTGA] HWI-EAS406:5:92:967:285#0 1 1 76 49308 49383 [TAAAAAAATGAAAAAAATAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACA] HWI-EAS406:7:98:1054:1631#0 1 1 76 49389 49464 [TAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTA] HWI-EAS406:6:33:635:533#0 1 1 76 49406 49481 [TTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGAC] HWI-EAS406:5:63:1559:1547#0 1 1 76 49453 49528 [AAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGA] HWI-EAS406:6:54:789:786#0 1 1 76 49459 49534 [TTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAA] HWI-EAS406:6:39:1685:1777#0 1 1 76 49470 49545 [AGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGT] HWI-EAS406:6:95:1346:1513#0 1 1 76 49476 49551 [AAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTC] HWI-EAS406:7:45:856:1803#0 1 1 76 49495 49570 [ATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCAC] HWI-EAS406:7:17:551:847#0 1 1 76 49507 49582 [CAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAAC] HWI-EAS406:7:55:752:1229#0 1 1 76 49524 49599 [AGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACA] HWI-EAS406:7:37:659:1877#0 1 1 76 49525 49600 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:5:52:34:1884#0 1 1 76 49531 49606 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:6:40:1211:1751#0 1 1 76 49531 49606 [CGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC] HWI-EAS406:5:58:257:1600#0 1 1 76 49555 49630 [CCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTCCA] HWI-EAS406:6:72:868:197#0 1 1 76 49557 49632 [CCACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATG] HWI-EAS406:7:35:1732:912#0 1 1 76 49601 49676 [CACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGA] HWI-EAS406:5:6:321:1826#0 1 1 76 49602 49677 [ACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAG] HWI-EAS406:6:2:1733:562#0 1 1 76 49603 49678 [AAGATGAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAA] HWI-EAS406:5:44:1362:1897#0 1 1 76 49671 49746 [GAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCA] HWI-EAS406:6:1:1082:657#0 1 1 76 49676 49751 [GCCTGCAAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAG] HWI-EAS406:6:53:1533:1846#0 1 1 76 49754 49829 [AAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGAT] HWI-EAS406:5:83:1518:639#0 1 1 76 49760 49835 [GTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAG] HWI-EAS406:7:6:1067:204#0 1 1 76 49789 49864 [TCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCG] HWI-EAS406:6:41:858:1916#0 1 1 76 49806 49881 [CCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGT] HWI-EAS406:7:26:1458:1886#0 1 1 76 49807 49882 [TTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACG] HWI-EAS406:6:2:872:581#0 1 1 76 49814 49889 [CTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGAT] HWI-EAS406:7:7:311:1973#0 1 1 76 49847 49922 [TGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATC] HWI-EAS406:5:43:1531:1812#0 1 1 76 49848 49923 [GATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAG] HWI-EAS406:5:80:139:821#0 1 1 76 49857 49932 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:5:26:200:1239#0 1 1 76 49861 49936 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:6:26:1096:1809#0 1 1 76 49861 49936 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:24:774:383#0 1 1 76 49862 49937 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:49:1571:1861#0 1 1 76 49862 49937 [AGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCC] HWI-EAS406:7:94:1301:1918#0 1 1 76 49866 49941 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:5:2:12:1497#0 1 1 76 49879 49954 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:6:9:645:1495#0 1 1 76 49879 49954 [CGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCT] HWI-EAS406:7:64:1555:372#0 1 1 76 49880 49955 [CTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTC] HWI-EAS406:6:24:463:628#0 1 1 76 49894 49969 [CGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTA] HWI-EAS406:7:8:863:63#0 1 1 76 49901 49976 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49982-50183] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50401-50539] There are [7] sequences in this contig [AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGC] HWI-EAS406:7:4:1328:1505#0 1 1 76 50401 50476 [CTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAG] HWI-EAS406:7:68:1290:1820#0 1 1 76 50410 50485 [GTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATAC] HWI-EAS406:7:93:895:769#0 1 1 76 50426 50501 [ATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATC] HWI-EAS406:5:38:578:1978#0 1 1 76 50439 50514 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:40:685:1064#0 1 1 76 50444 50519 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:6:73:1068:946#0 1 1 76 50453 50528 [ATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTT] HWI-EAS406:5:9:479:1782#0 1 1 76 50464 50539 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50554-55307] There are [3361] sequences in this contig [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:43:1500:794#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:84:648:826#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:7:16:503:229#0 1 1 76 50554 50629 [GCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGAC] HWI-EAS406:5:85:289:1897#0 1 1 76 50557 50632 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACA] HWI-EAS406:6:96:103:272#0 1 1 76 50558 50633 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:6:1:208:981#0 1 1 76 50560 50635 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:7:7:1771:1016#0 1 1 76 50560 50635 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCA] HWI-EAS406:5:29:636:1854#0 1 1 76 50564 50639 [GCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAG] HWI-EAS406:7:36:1104:1759#0 1 1 76 50566 50641 [AAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCT] HWI-EAS406:7:54:1327:1715#0 1 1 76 50571 50646 [AAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTC] HWI-EAS406:6:1:1062:918#0 1 1 76 50572 50647 [AAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCT] HWI-EAS406:6:11:1780:829#0 1 1 76 50573 50648 [AGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTG] HWI-EAS406:7:30:1018:1822#0 1 1 76 50574 50649 [GTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGC] HWI-EAS406:6:19:566:1606#0 1 1 76 50590 50665 [CATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGA] HWI-EAS406:5:57:665:1234#0 1 1 76 50592 50667 [TGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCT] HWI-EAS406:6:32:1315:1182#0 1 1 76 50595 50670 [GGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTT] HWI-EAS406:7:73:718:707#0 1 1 76 50596 50671 [GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGG] HWI-EAS406:6:52:1154:867#0 1 1 76 50611 50686 [GAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGA] HWI-EAS406:7:34:629:1493#0 1 1 76 50612 50687 [GACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAG] HWI-EAS406:7:90:1010:1759#0 1 1 76 50616 50691 [ACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGT] HWI-EAS406:7:94:774:1420#0 1 1 76 50617 50692 [CAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCG] HWI-EAS406:7:40:826:413#0 1 1 76 50619 50694 [GCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTT] HWI-EAS406:6:74:90:506#0 1 1 76 50628 50703 [TGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAG] HWI-EAS406:6:21:173:1409#0 1 1 76 50648 50723 [GGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAG] HWI-EAS406:7:64:926:1064#0 1 1 76 50661 50736 [GCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGC] HWI-EAS406:5:32:717:546#0 1 1 76 50736 50811 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:5:65:1666:1672#0 1 1 76 50739 50814 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:6:24:1782:1765#0 1 1 76 50745 50820 [AAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGC] HWI-EAS406:5:23:1107:1513#0 1 1 76 50747 50822 [GCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGAC] HWI-EAS406:7:38:557:566#0 1 1 76 50752 50827 [CTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACG] HWI-EAS406:6:49:1324:1654#0 1 1 76 50753 50828 [TCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGA] HWI-EAS406:7:59:762:782#0 1 1 76 50754 50829 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:24:963:235#0 1 1 76 50756 50831 [CACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGA] HWI-EAS406:6:64:951:728#0 1 1 76 50764 50839 [ACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAA] HWI-EAS406:6:56:768:1346#0 1 1 76 50765 50840 [CGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAG] HWI-EAS406:5:3:205:160#0 1 1 76 50773 50848 [GGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGC] HWI-EAS406:7:34:471:1673#0 1 1 76 50774 50849 [GACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCT] HWI-EAS406:5:46:1284:820#0 1 1 76 50779 50854 [TCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCA] HWI-EAS406:6:5:1225:596#0 1 1 76 50783 50858 [CCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAG] HWI-EAS406:6:7:835:305#0 1 1 76 50784 50859 [GGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCG] HWI-EAS406:7:74:747:461#0 1 1 76 50802 50877 [TCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCG] HWI-EAS406:7:74:174:410#0 1 1 76 50808 50883 [ATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAG] HWI-EAS406:7:37:415:589#0 1 1 76 50818 50893 [GAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:7:6:1564:858#0 1 1 76 50846 50921 [CAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCT] HWI-EAS406:7:7:1295:1258#0 1 1 76 50857 50932 [AGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTA] HWI-EAS406:7:55:52:968#0 1 1 76 50858 50933 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:34:1227:1484#0 1 1 76 50885 50960 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:6:15:427:980#0 1 1 76 50890 50965 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:5:1113:853#0 1 1 76 50905 50980 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:5:77:324:1399#0 1 1 76 50911 50986 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:6:3:1766:1294#0 1 1 76 50911 50986 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:6:68:479:1856#0 1 1 76 50912 50987 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:7:84:89:1889#0 1 1 76 50912 50987 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:27:1458:1785#0 1 1 76 50914 50989 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:5:80:1487:4#0 1 1 76 50915 50990 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:822:1111#0 1 1 76 50915 50990 [AGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTT] HWI-EAS406:6:67:1266:536#0 1 1 76 50917 50992 [TTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACAT] HWI-EAS406:6:53:391:407#0 1 1 76 50946 51021 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:7:51:1586:385#0 1 1 76 51057 51132 [TTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTG] HWI-EAS406:5:77:1740:1118#0 1 1 76 51067 51142 [GTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAAT] HWI-EAS406:5:75:1703:1973#0 1 1 76 51097 51172 [TTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCC] HWI-EAS406:6:59:1497:1156#0 1 1 76 51106 51181 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:45:613:569#0 1 1 76 51114 51189 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:6:38:774:1374#0 1 1 76 51119 51194 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:7:19:1655:985#0 1 1 76 51119 51194 [GTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAA] HWI-EAS406:6:1:411:322#0 1 1 76 51125 51200 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:60:917:484#0 1 1 76 51126 51201 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:7:45:192:1424#0 1 1 76 51126 51201 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:22:460:1175#0 1 1 76 51127 51202 [TTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGA] HWI-EAS406:7:9:483:12#0 1 1 76 51134 51209 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1024:1704#0 1 1 76 51136 51211 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:7:44:768:1276#0 1 1 76 51136 51211 [GTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGT] HWI-EAS406:7:25:542:1763#0 1 1 76 51139 51214 [TTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTG] HWI-EAS406:7:56:429:836#0 1 1 76 51140 51215 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:51:712:653#0 1 1 76 51142 51217 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:46:769:653#0 1 1 76 51143 51218 [TTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAA] HWI-EAS406:7:28:1567:1843#0 1 1 76 51145 51220 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:31:66:1932#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:80:607:669#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:47:37:1870#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:57:619:901#0 1 1 76 51150 51225 [TTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGA] HWI-EAS406:5:55:446:1090#0 1 1 76 51156 51231 [CTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAAT] HWI-EAS406:5:71:1271:1404#0 1 1 76 51158 51233 [ACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCAT] HWI-EAS406:7:46:161:1083#0 1 1 76 51162 51237 [GATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGT] HWI-EAS406:6:55:894:421#0 1 1 76 51166 51241 [AATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGG] HWI-EAS406:7:48:228:1846#0 1 1 76 51170 51245 [ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGG] HWI-EAS406:5:59:568:1370#0 1 1 76 51171 51246 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:7:49:1543:1352#0 1 1 76 51177 51252 [TCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAG] HWI-EAS406:5:60:1319:266#0 1 1 76 51179 51254 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:52:727:1470#0 1 1 76 51180 51255 [CAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGG] HWI-EAS406:5:63:1667:1992#0 1 1 76 51181 51256 [ATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTG] HWI-EAS406:5:46:1397:1605#0 1 1 76 51183 51258 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:5:23:1576:1720#0 1 1 76 51186 51261 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:7:53:872:761#0 1 1 76 51186 51261 [TTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGT] HWI-EAS406:7:36:218:140#0 1 1 76 51190 51265 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:456:1253#0 1 1 76 51194 51269 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:5:40:683:389#0 1 1 76 51195 51270 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:6:99:167:1295#0 1 1 76 51195 51270 [GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTT] HWI-EAS406:7:24:1480:278#0 1 1 76 51205 51280 [GATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTA] HWI-EAS406:6:47:812:175#0 1 1 76 51208 51283 [CTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATAT] HWI-EAS406:7:45:715:611#0 1 1 76 51225 51300 [GGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCC] HWI-EAS406:7:52:777:540#0 1 1 76 51229 51304 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:53:1708:725#0 1 1 76 51233 51308 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:55:1111:1008#0 1 1 76 51233 51308 [TCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCT] HWI-EAS406:7:44:635:681#0 1 1 76 51234 51309 [AGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTA] HWI-EAS406:6:51:1602:1743#0 1 1 76 51243 51318 [AAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATG] HWI-EAS406:7:72:942:1104#0 1 1 76 51252 51327 [TTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTT] HWI-EAS406:5:54:509:734#0 1 1 76 51265 51340 [GCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCA] HWI-EAS406:5:80:717:232#0 1 1 76 51270 51345 [CTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCAC] HWI-EAS406:6:52:1029:1911#0 1 1 76 51271 51346 [TTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTT] HWI-EAS406:6:40:135:217#0 1 1 76 51280 51355 [GTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCAT] HWI-EAS406:7:50:892:1037#0 1 1 76 51286 51361 [TTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATT] HWI-EAS406:7:51:1180:964#0 1 1 76 51294 51369 [TCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTT] HWI-EAS406:5:52:1010:1723#0 1 1 76 51295 51370 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:5:36:629:1477#0 1 1 76 51296 51371 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:6:56:196:1560#0 1 1 76 51296 51371 [CCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCG] HWI-EAS406:7:66:1229:1457#0 1 1 76 51303 51378 [TTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA] HWI-EAS406:5:28:1059:907#0 1 1 76 51305 51380 [GCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAG] HWI-EAS406:5:46:395:1707#0 1 1 76 51307 51382 [CTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGG] HWI-EAS406:7:41:1649:828#0 1 1 76 51308 51383 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:7:50:1701:636#0 1 1 76 51317 51392 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:6:97:666:1514#0 1 1 76 51325 51400 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:7:79:454:980#0 1 1 76 51325 51400 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:83:1758:1547#0 1 1 76 51327 51402 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:55:1085:812#0 1 1 76 51333 51408 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:45:1784:1703#0 1 1 76 51340 51415 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:75:977:1193#0 1 1 76 51341 51416 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:83:23:1147#0 1 1 76 51341 51416 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:5:66:1350:1008#0 1 1 76 51343 51418 [CACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCT] HWI-EAS406:7:40:988:1790#0 1 1 76 51344 51419 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:6:21:1052:487#0 1 1 76 51348 51423 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:53:1085:1630#0 1 1 76 51355 51430 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:76:504:223#0 1 1 76 51355 51430 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:61:102:1424#0 1 1 76 51356 51431 [ATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTT] HWI-EAS406:7:67:853:1547#0 1 1 76 51357 51432 [TCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTG] HWI-EAS406:5:43:512:2027#0 1 1 76 51358 51433 [CATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGC] HWI-EAS406:6:51:1565:1778#0 1 1 76 51359 51434 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:68:1234:1128#0 1 1 76 51363 51438 [GCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGA] HWI-EAS406:6:28:1631:1290#0 1 1 76 51365 51440 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:41:997:642#0 1 1 76 51367 51442 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:46:1363:675#0 1 1 76 51367 51442 [CTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTG] HWI-EAS406:7:67:1153:1729#0 1 1 76 51371 51446 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:51:1783:1732#0 1 1 76 51372 51447 [CCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT] HWI-EAS406:7:39:1211:2033#0 1 1 76 51375 51450 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:5:7:1228:400#0 1 1 76 51376 51451 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:6:60:780:1892#0 1 1 76 51376 51451 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:6:50:731:984#0 1 1 76 51377 51452 [GAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAA] HWI-EAS406:6:51:108:1422#0 1 1 76 51378 51453 [TGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGC] HWI-EAS406:5:59:144:1944#0 1 1 76 51384 51459 [GTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCT] HWI-EAS406:7:50:397:1516#0 1 1 76 51385 51460 [TTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTA] HWI-EAS406:6:44:1729:1021#0 1 1 76 51386 51461 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:5:65:954:1755#0 1 1 76 51388 51463 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:6:57:1789:1580#0 1 1 76 51388 51463 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:44:794:1993#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:53:1459:823#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:6:53:911:1708#0 1 1 76 51389 51464 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:34:1608:163#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:43:1600:240#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:6:45:1200:1310#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:7:59:1447:1020#0 1 1 76 51390 51465 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:6:43:1110:1150#0 1 1 76 51391 51466 [GAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAG] HWI-EAS406:5:46:1057:798#0 1 1 76 51392 51467 [AATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCT] HWI-EAS406:5:46:1495:1178#0 1 1 76 51394 51469 [ATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTA] HWI-EAS406:7:55:1203:544#0 1 1 76 51395 51470 [TGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAA] HWI-EAS406:7:50:940:1822#0 1 1 76 51396 51471 [CCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATA] HWI-EAS406:5:41:907:1844#0 1 1 76 51398 51473 [CCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAG] HWI-EAS406:7:53:1444:557#0 1 1 76 51399 51474 [CGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGA] HWI-EAS406:7:51:1720:921#0 1 1 76 51400 51475 [GAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGAC] HWI-EAS406:7:85:1682:878#0 1 1 76 51401 51476 [GACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTT] HWI-EAS406:6:55:373:154#0 1 1 76 51403 51478 [AACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTT] HWI-EAS406:5:17:1384:1558#0 1 1 76 51406 51481 [ACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTA] HWI-EAS406:5:55:1012:1598#0 1 1 76 51407 51482 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:64:1284:590#0 1 1 76 51488 51563 [ATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAG] HWI-EAS406:7:41:26:1789#0 1 1 76 51500 51575 [TTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATT] HWI-EAS406:6:53:39:1372#0 1 1 76 51504 51579 [TCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTG] HWI-EAS406:5:42:711:818#0 1 1 76 51505 51580 [GACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGC] HWI-EAS406:5:23:374:1326#0 1 1 76 51514 51589 [ACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT] HWI-EAS406:6:53:1070:1881#0 1 1 76 51515 51590 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:6:44:1471:1754#0 1 1 76 51520 51595 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:7:49:1247:784#0 1 1 76 51520 51595 [GTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGA] HWI-EAS406:7:52:523:1250#0 1 1 76 51524 51599 [TTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATA] HWI-EAS406:6:48:1635:1117#0 1 1 76 51526 51601 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:5:50:1396:1724#0 1 1 76 51532 51607 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:7:55:1695:1934#0 1 1 76 51532 51607 [ATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGAT] HWI-EAS406:7:75:1084:1280#0 1 1 76 51533 51608 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:5:53:1039:831#0 1 1 76 51534 51609 [TTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGA] HWI-EAS406:5:46:847:740#0 1 1 76 51536 51611 [CAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCAT] HWI-EAS406:6:54:1299:528#0 1 1 76 51540 51615 [AAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATT] HWI-EAS406:5:27:1164:521#0 1 1 76 51541 51616 [ATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTG] HWI-EAS406:6:47:445:273#0 1 1 76 51543 51618 [GCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCAT] HWI-EAS406:7:45:553:1319#0 1 1 76 51547 51622 [CATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATC] HWI-EAS406:7:11:854:1813#0 1 1 76 51548 51623 [TTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCT] HWI-EAS406:5:38:485:1629#0 1 1 76 51550 51625 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:7:45:1007:739#0 1 1 76 51556 51631 [ATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATAC] HWI-EAS406:5:39:868:1983#0 1 1 76 51561 51636 [GCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATG] HWI-EAS406:7:40:711:530#0 1 1 76 51588 51663 [TGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGT] HWI-EAS406:5:69:29:997#0 1 1 76 51597 51672 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:5:25:1170:1418#0 1 1 76 51598 51673 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:6:39:632:1874#0 1 1 76 51598 51673 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:46:1372:1936#0 1 1 76 51602 51677 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:55:604:688#0 1 1 76 51602 51677 [TGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTT] HWI-EAS406:5:53:1104:1965#0 1 1 76 51605 51680 [GATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTC] HWI-EAS406:5:40:1519:548#0 1 1 76 51606 51681 [ATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCC] HWI-EAS406:7:54:543:798#0 1 1 76 51607 51682 [TTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCT] HWI-EAS406:6:53:520:1012#0 1 1 76 51608 51683 [TCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAG] HWI-EAS406:6:98:1293:1754#0 1 1 76 51612 51687 [CATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGT] HWI-EAS406:5:63:1624:1802#0 1 1 76 51613 51688 [ATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTC] HWI-EAS406:6:8:950:1304#0 1 1 76 51614 51689 [TTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCA] HWI-EAS406:5:61:535:401#0 1 1 76 51615 51690 [TTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAA] HWI-EAS406:5:26:1745:468#0 1 1 76 51616 51691 [TGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAA] HWI-EAS406:6:66:722:1305#0 1 1 76 51617 51692 [CCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAA] HWI-EAS406:7:51:1116:1731#0 1 1 76 51619 51694 [CTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTAT] HWI-EAS406:6:58:303:1017#0 1 1 76 51624 51699 [TAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCA] HWI-EAS406:5:20:238:217#0 1 1 76 51626 51701 [TTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTC] HWI-EAS406:7:61:801:741#0 1 1 76 51629 51704 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:5:34:186:1817#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:6:50:1685:713#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:7:46:986:941#0 1 1 76 51643 51718 [GGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTT] HWI-EAS406:5:53:18:1405#0 1 1 76 51649 51724 [GTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTA] HWI-EAS406:6:66:358:148#0 1 1 76 51650 51725 [ATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT] HWI-EAS406:6:65:348:565#0 1 1 76 51655 51730 [CCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAAC] HWI-EAS406:5:45:738:957#0 1 1 76 51665 51740 [TTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCA] HWI-EAS406:6:38:975:65#0 1 1 76 51677 51752 [CATAGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATC] HWI-EAS406:6:48:1130:1880#0 1 1 76 51728 51803 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:5:48:881:559#0 1 1 76 51734 51809 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:7:49:622:558#0 1 1 76 51734 51809 [ACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTG] HWI-EAS406:7:54:742:672#0 1 1 76 51739 51814 [ATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTC] HWI-EAS406:5:44:1175:996#0 1 1 76 51743 51818 [TCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCG] HWI-EAS406:7:39:1740:231#0 1 1 76 51744 51819 [AAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACA] HWI-EAS406:6:46:1377:1168#0 1 1 76 51747 51822 [AATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAA] HWI-EAS406:7:64:25:503#0 1 1 76 51748 51823 [TCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATC] HWI-EAS406:5:4:309:1035#0 1 1 76 51750 51825 [GCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACT] HWI-EAS406:5:4:776:1060#0 1 1 76 51759 51834 [ACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTAC] HWI-EAS406:5:65:809:1514#0 1 1 76 51761 51836 [CTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACA] HWI-EAS406:5:60:1269:1183#0 1 1 76 51762 51837 [TAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAAC] HWI-EAS406:5:41:1628:1655#0 1 1 76 51764 51839 [GATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACAT] HWI-EAS406:6:33:424:176#0 1 1 76 51766 51841 [TAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTG] HWI-EAS406:5:61:1080:471#0 1 1 76 51769 51844 [TACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGA] HWI-EAS406:5:40:1290:1233#0 1 1 76 51777 51852 [CTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGC] HWI-EAS406:6:40:1036:2014#0 1 1 76 51779 51854 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:36:1245:927#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:52:297:1809#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:59:1054:1320#0 1 1 76 51780 51855 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:5:46:940:679#0 1 1 76 51781 51856 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:7:82:46:1850#0 1 1 76 51781 51856 [TCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAA] HWI-EAS406:7:30:584:783#0 1 1 76 51786 51861 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:3:1035:1388#0 1 1 76 51787 51862 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:30:1615:1913#0 1 1 76 51787 51862 [TCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAAC] HWI-EAS406:6:61:345:943#0 1 1 76 51788 51863 [CAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACT] HWI-EAS406:5:52:1113:1467#0 1 1 76 51789 51864 [AGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTC] HWI-EAS406:5:49:1366:809#0 1 1 76 51790 51865 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:5:83:566:978#0 1 1 76 51792 51867 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:6:44:1301:33#0 1 1 76 51792 51867 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1337:2008#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1338:2010#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:44:1177:1897#0 1 1 76 51793 51868 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:39:726:1083#0 1 1 76 51794 51869 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:90:1469:1403#0 1 1 76 51794 51869 [TTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC] HWI-EAS406:6:84:547:967#0 1 1 76 51795 51870 [GATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATC] HWI-EAS406:7:79:983:987#0 1 1 76 51798 51873 [CAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCG] HWI-EAS406:7:48:1134:1483#0 1 1 76 51807 51882 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:6:61:1073:816#0 1 1 76 51810 51885 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:7:44:468:1233#0 1 1 76 51810 51885 [CTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTT] HWI-EAS406:5:42:701:241#0 1 1 76 51812 51887 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:5:54:1071:668#0 1 1 76 51815 51890 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:7:57:1749:546#0 1 1 76 51815 51890 [TTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCA] HWI-EAS406:6:2:1018:1610#0 1 1 76 51816 51891 [CAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTC] HWI-EAS406:5:70:667:1808#0 1 1 76 51821 51896 [AATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCT] HWI-EAS406:5:66:1372:1962#0 1 1 76 51822 51897 [CTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAG] HWI-EAS406:5:46:306:950#0 1 1 76 51825 51900 [TCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTA] HWI-EAS406:5:12:265:1242#0 1 1 76 51827 51902 [TATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGA] HWI-EAS406:5:31:812:415#0 1 1 76 51829 51904 [ATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGAT] HWI-EAS406:5:50:1699:1414#0 1 1 76 51830 51905 [ACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTT] HWI-EAS406:7:95:127:1794#0 1 1 76 51832 51907 [ACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACAT] HWI-EAS406:7:44:537:1071#0 1 1 76 51838 51913 [TGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGA] HWI-EAS406:6:60:856:1143#0 1 1 76 51843 51918 [GTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGAT] HWI-EAS406:5:21:1482:1293#0 1 1 76 51844 51919 [CTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTT] HWI-EAS406:5:54:1701:560#0 1 1 76 51846 51921 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:5:86:48:1444#0 1 1 76 51847 51922 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:7:55:910:185#0 1 1 76 51847 51922 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:14:172:1797#0 1 1 76 51851 51926 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:60:333:510#0 1 1 76 51851 51926 [AGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCAC] HWI-EAS406:7:27:1164:411#0 1 1 76 51852 51927 [CCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTT] HWI-EAS406:7:61:206:1212#0 1 1 76 51854 51929 [CTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTG] HWI-EAS406:6:80:363:1516#0 1 1 76 51855 51930 [AAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTG] HWI-EAS406:7:7:1668:1334#0 1 1 76 51859 51934 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:152:1641#0 1 1 76 51865 51940 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:154:1642#0 1 1 76 51865 51940 [ACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTC] HWI-EAS406:6:62:315:1419#0 1 1 76 51869 51944 [AAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTT] HWI-EAS406:5:47:636:1051#0 1 1 76 51874 51949 [TTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTAT] HWI-EAS406:6:74:1253:670#0 1 1 76 51877 51952 [TGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATT] HWI-EAS406:5:25:997:1630#0 1 1 76 51878 51953 [GGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTT] HWI-EAS406:6:78:489:1142#0 1 1 76 51879 51954 [GCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCT] HWI-EAS406:5:34:1146:1143#0 1 1 76 51882 51957 [CCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTT] HWI-EAS406:7:62:1125:1571#0 1 1 76 51883 51958 [CGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTT] HWI-EAS406:5:93:591:1425#0 1 1 76 51884 51959 [TTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTG] HWI-EAS406:6:19:1597:771#0 1 1 76 51886 51961 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:6:43:608:993#0 1 1 76 51887 51962 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:7:13:332:1432#0 1 1 76 51887 51962 [GCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTT] HWI-EAS406:7:39:1330:1144#0 1 1 76 51888 51963 [CAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTAC] HWI-EAS406:7:73:713:226#0 1 1 76 51890 51965 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:52:564:1215#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:77:1015:272#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:2:735:995#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:67:1426:1561#0 1 1 76 51891 51966 [TTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGAT] HWI-EAS406:7:89:27:1856#0 1 1 76 51894 51969 [CTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTC] HWI-EAS406:7:88:159:600#0 1 1 76 51896 51971 [TGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCT] HWI-EAS406:6:47:520:1926#0 1 1 76 51897 51972 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:59:250:1202#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:63:300:431#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:80:1521:675#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:87:892:862#0 1 1 76 51898 51973 [GTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTT] HWI-EAS406:6:71:1176:442#0 1 1 76 51900 51975 [TTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCA] HWI-EAS406:5:82:1083:40#0 1 1 76 51906 51981 [GAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACC] HWI-EAS406:6:30:1392:410#0 1 1 76 51908 51983 [TTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCT] HWI-EAS406:6:53:894:1026#0 1 1 76 51913 51988 [GAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTT] HWI-EAS406:5:81:1562:328#0 1 1 76 51915 51990 [TAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAG] HWI-EAS406:6:79:1028:1016#0 1 1 76 51939 52014 [TCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGC] HWI-EAS406:5:33:751:478#0 1 1 76 51972 52047 [TCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCA] HWI-EAS406:5:52:433:445#0 1 1 76 51976 52051 [TCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGAC] HWI-EAS406:6:81:1602:1312#0 1 1 76 51979 52054 [CACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACA] HWI-EAS406:7:58:1056:909#0 1 1 76 51980 52055 [ACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACAT] HWI-EAS406:6:65:1550:1808#0 1 1 76 51981 52056 [CCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATC] HWI-EAS406:5:26:619:589#0 1 1 76 51982 52057 [TCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAG] HWI-EAS406:5:25:1540:854#0 1 1 76 51984 52059 [CCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGA] HWI-EAS406:6:44:729:758#0 1 1 76 51985 52060 [TAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTT] HWI-EAS406:7:72:764:515#0 1 1 76 51990 52065 [ATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAG] HWI-EAS406:6:26:987:409#0 1 1 76 51992 52067 [TCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGA] HWI-EAS406:5:59:1498:1758#0 1 1 76 51993 52068 [CTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAG] HWI-EAS406:6:43:26:349#0 1 1 76 51994 52069 [TACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGA] HWI-EAS406:6:4:373:1470#0 1 1 76 51995 52070 [AGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAG] HWI-EAS406:5:79:571:1802#0 1 1 76 51998 52073 [GGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGA] HWI-EAS406:7:1:743:1712#0 1 1 76 51999 52074 [TGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGT] HWI-EAS406:7:33:502:813#0 1 1 76 52001 52076 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:6:74:1764:1670#0 1 1 76 52002 52077 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:7:27:1272:939#0 1 1 76 52002 52077 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:30:1002:764#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:86:1501:1809#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:6:95:1326:856#0 1 1 76 52005 52080 [GAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCT] HWI-EAS406:5:10:1349:1560#0 1 1 76 52006 52081 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:5:39:597:1883#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:36:536:1898#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:68:1133:1558#0 1 1 76 52007 52082 [ACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAG] HWI-EAS406:5:78:1629:923#0 1 1 76 52008 52083 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:5:64:51:2029#0 1 1 76 52009 52084 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:6:83:1173:1390#0 1 1 76 52009 52084 [TTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAA] HWI-EAS406:5:40:882:1796#0 1 1 76 52010 52085 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:5:88:516:1281#0 1 1 76 52012 52087 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:6:64:491:681#0 1 1 76 52012 52087 [AGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATA] HWI-EAS406:7:84:1212:1365#0 1 1 76 52013 52088 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:5:40:222:1844#0 1 1 76 52014 52089 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:7:72:699:1313#0 1 1 76 52014 52089 [GAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGA] HWI-EAS406:6:64:307:369#0 1 1 76 52015 52090 [AGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAA] HWI-EAS406:6:60:133:1637#0 1 1 76 52016 52091 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:5:75:1124:1493#0 1 1 76 52017 52092 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:6:56:587:1464#0 1 1 76 52017 52092 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:5:35:1653:2022#0 1 1 76 52018 52093 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:7:68:517:1165#0 1 1 76 52018 52093 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:16:1056:1081#0 1 1 76 52020 52095 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:19:1121:357#0 1 1 76 52020 52095 [GGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAG] HWI-EAS406:7:34:419:1654#0 1 1 76 52022 52097 [TCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAA] HWI-EAS406:6:73:130:1926#0 1 1 76 52024 52099 [CCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAG] HWI-EAS406:6:8:582:399#0 1 1 76 52025 52100 [CATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGA] HWI-EAS406:6:89:579:160#0 1 1 76 52026 52101 [ATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAG] HWI-EAS406:6:41:580:1400#0 1 1 76 52027 52102 [TCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGC] HWI-EAS406:5:17:398:669#0 1 1 76 52028 52103 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:6:84:1266:1109#0 1 1 76 52029 52104 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:7:5:999:1547#0 1 1 76 52029 52104 [AAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAA] HWI-EAS406:5:14:148:1373#0 1 1 76 52030 52105 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:2:1699:806#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:45:1130:1897#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:6:46:377:1707#0 1 1 76 52031 52106 [CCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAG] HWI-EAS406:7:48:1774:327#0 1 1 76 52033 52108 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:5:12:1301:601#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:7:1601:2011#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:64:508:1598#0 1 1 76 52036 52111 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:5:1694:223#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:47:902:645#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:70:1378:1151#0 1 1 76 52037 52112 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:5:10:1713:1450#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:6:59:183:1429#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:7:72:1029:862#0 1 1 76 52039 52114 [ATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGC] HWI-EAS406:5:73:1557:501#0 1 1 76 52043 52118 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:5:32:315:118#0 1 1 76 52046 52121 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:7:22:1366:1478#0 1 1 76 52046 52121 [CTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAG] HWI-EAS406:7:11:1474:1191#0 1 1 76 52047 52122 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:6:78:12:1461#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:5:1068:1061#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:33:1476:1754#0 1 1 76 52048 52123 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:5:9:1339:499#0 1 1 76 52049 52124 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:6:30:958:346#0 1 1 76 52049 52124 [CAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATT] HWI-EAS406:7:65:1412:1398#0 1 1 76 52050 52125 [AGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTG] HWI-EAS406:6:22:214:1178#0 1 1 76 52051 52126 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:6:70:161:1056#0 1 1 76 52054 52129 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:7:18:1536:1583#0 1 1 76 52054 52129 [ATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTA] HWI-EAS406:6:46:1138:842#0 1 1 76 52055 52130 [CAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACT] HWI-EAS406:5:27:303:1774#0 1 1 76 52057 52132 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:5:12:1404:854#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:6:54:1784:1747#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:7:35:720:1415#0 1 1 76 52058 52133 [GAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGA] HWI-EAS406:5:23:1243:48#0 1 1 76 52059 52134 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:18:1525:653#0 1 1 76 52060 52135 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:40:245:523#0 1 1 76 52060 52135 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:5:35:477:859#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:12:1141:652#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:73:1171:1047#0 1 1 76 52061 52136 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:5:17:517:1752#0 1 1 76 52062 52137 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:6:95:231:1845#0 1 1 76 52062 52137 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:5:67:1358:1820#0 1 1 76 52063 52138 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:7:100:638:523#0 1 1 76 52063 52138 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:6:71:494:1059#0 1 1 76 52064 52139 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:7:79:1404:1143#0 1 1 76 52064 52139 [TAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGG] HWI-EAS406:5:91:969:722#0 1 1 76 52065 52140 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:5:37:1425:906#0 1 1 76 52066 52141 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:7:68:1118:1565#0 1 1 76 52066 52141 [GAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAG] HWI-EAS406:5:20:211:742#0 1 1 76 52067 52142 [AGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGA] HWI-EAS406:7:61:827:2#0 1 1 76 52068 52143 [GAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGAC] HWI-EAS406:7:65:1213:1604#0 1 1 76 52069 52144 [GTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT] HWI-EAS406:7:17:207:1549#0 1 1 76 52075 52150 [TGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAA] HWI-EAS406:5:73:656:1860#0 1 1 76 52078 52153 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:6:54:1183:1352#0 1 1 76 52079 52154 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:7:37:993:682#0 1 1 76 52079 52154 [CTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAA] HWI-EAS406:7:74:1122:1374#0 1 1 76 52080 52155 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:6:94:713:1830#0 1 1 76 52081 52156 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:7:9:1499:1250#0 1 1 76 52081 52156 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:65:1142:350#0 1 1 76 52083 52158 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:88:1031:1762#0 1 1 76 52083 52158 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:20:950:1457#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:48:827:2014#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:72:1667:1616#0 1 1 76 52084 52159 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:5:93:525:195#0 1 1 76 52085 52160 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:7:32:1304:195#0 1 1 76 52085 52160 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:5:2:1649:1295#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:6:33:800:1496#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:7:85:342:1989#0 1 1 76 52087 52162 [AGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGC] HWI-EAS406:7:70:1503:1950#0 1 1 76 52088 52163 [GAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCG] HWI-EAS406:7:72:1172:170#0 1 1 76 52089 52164 [AAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGA] HWI-EAS406:5:60:842:1890#0 1 1 76 52090 52165 [AGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAG] HWI-EAS406:5:67:1293:1622#0 1 1 76 52091 52166 [GAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGC] HWI-EAS406:7:4:588:842#0 1 1 76 52092 52167 [AGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCA] HWI-EAS406:6:29:322:1841#0 1 1 76 52093 52168 [GAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAG] HWI-EAS406:7:15:1792:478#0 1 1 76 52094 52169 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:7:1030:1738#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:41:708:742#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:70:671:1443#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:59:1396:1065#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:76:508:213#0 1 1 76 52095 52170 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:5:38:507:1944#0 1 1 76 52096 52171 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:7:68:957:1437#0 1 1 76 52096 52171 [GAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTC] HWI-EAS406:6:25:726:1823#0 1 1 76 52097 52172 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:6:20:1401:1637#0 1 1 76 52098 52173 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:7:81:1000:1464#0 1 1 76 52098 52173 [AGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGA] HWI-EAS406:5:14:933:1952#0 1 1 76 52099 52174 [GAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGAT] HWI-EAS406:5:30:760:323#0 1 1 76 52100 52175 [CAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCA] HWI-EAS406:6:27:61:873#0 1 1 76 52103 52178 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:24:633:991#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:92:467:1920#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:100:519:398#0 1 1 76 52106 52181 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:26:697:1150#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:31:181:887#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:7:10:575:1888#0 1 1 76 52107 52182 [GGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGC] HWI-EAS406:5:73:1149:233#0 1 1 76 52108 52183 [GCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCA] HWI-EAS406:5:55:1257:1795#0 1 1 76 52109 52184 [CTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCAC] HWI-EAS406:6:65:1394:866#0 1 1 76 52110 52185 [TCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACT] HWI-EAS406:5:64:1536:142#0 1 1 76 52111 52186 [ACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTA] HWI-EAS406:6:94:552:341#0 1 1 76 52113 52188 [TTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACG] HWI-EAS406:5:92:1176:518#0 1 1 76 52115 52190 [CAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACC] HWI-EAS406:6:93:1111:754#0 1 1 76 52118 52193 [AGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCG] HWI-EAS406:7:8:1159:1896#0 1 1 76 52119 52194 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:5:80:570:6#0 1 1 76 52121 52196 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:7:18:1662:1508#0 1 1 76 52121 52196 [GATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCC] HWI-EAS406:5:6:168:1581#0 1 1 76 52122 52197 [TTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCA] HWI-EAS406:7:18:1237:879#0 1 1 76 52124 52199 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:3:1517:359#0 1 1 76 52125 52200 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:47:1298:719#0 1 1 76 52125 52200 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:5:27:1331:1024#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:25:283:1331#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:100:833:1685#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:7:100:1443:529#0 1 1 76 52129 52204 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:6:54:764:946#0 1 1 76 52130 52205 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:7:53:686:1832#0 1 1 76 52130 52205 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:56:623:1125#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:86:174:1312#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:6:64:1283:110#0 1 1 76 52131 52206 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:5:87:981:221#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:48:1199:1626#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:67:691:878#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:73:1090:1807#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:7:13:1294:1416#0 1 1 76 52132 52207 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:5:83:1077:920#0 1 1 76 52134 52209 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:6:64:465:861#0 1 1 76 52134 52209 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:5:67:422:1731#0 1 1 76 52138 52213 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:7:34:1113:408#0 1 1 76 52138 52213 [GGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATA] HWI-EAS406:7:13:139:1696#0 1 1 76 52139 52214 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:15:890:3#0 1 1 76 52140 52215 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:28:1255:1618#0 1 1 76 52140 52215 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:5:59:1773:1125#0 1 1 76 52142 52217 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:6:10:1600:1789#0 1 1 76 52142 52217 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:10:430:902#0 1 1 76 52143 52218 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:31:579:224#0 1 1 76 52143 52218 [CATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTG] HWI-EAS406:7:65:1779:423#0 1 1 76 52144 52219 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:5:27:1246:1460#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:38:426:1977#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:39:1537:1000#0 1 1 76 52145 52220 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:19:1617:1113#0 1 1 76 52147 52222 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:64:1133:462#0 1 1 76 52147 52222 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:5:10:1084:1542#0 1 1 76 52148 52223 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:6:36:1502:1446#0 1 1 76 52148 52223 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:21:1461:1189#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:86:1317:698#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:23:1288:392#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:88:1084:268#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:7:2:715:1936#0 1 1 76 52149 52224 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:5:89:1196:1698#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:8:962:500#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:22:86:1843#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:65:1076:100#0 1 1 76 52150 52225 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:31:1000:1428#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:83:1606:783#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:24:1405:1720#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:86:412:478#0 1 1 76 52151 52226 [AAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGA] HWI-EAS406:7:45:921:1899#0 1 1 76 52153 52228 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:18:1405:416#0 1 1 76 52154 52229 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:77:898:1160#0 1 1 76 52154 52229 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:5:69:705:951#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:6:59:917:2034#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:7:9:781:1662#0 1 1 76 52156 52231 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:5:71:400:921#0 1 1 76 52157 52232 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:7:67:181:1796#0 1 1 76 52157 52232 [AACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACC] HWI-EAS406:6:27:521:1119#0 1 1 76 52158 52233 [ACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCC] HWI-EAS406:5:71:343:664#0 1 1 76 52159 52234 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:5:39:281:1500#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:6:74:1508:965#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:7:9:1222:1239#0 1 1 76 52160 52235 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:78:223:715#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:84:1052:218#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:17:484:1798#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:53:1251:1786#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:63:1270:309#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:79:386:1740#0 1 1 76 52161 52236 [GCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCT] HWI-EAS406:7:84:1292:1968#0 1 1 76 52162 52237 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:17:1646:1076#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:85:1195:1727#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:66:1164:987#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:81:1119:760#0 1 1 76 52163 52238 [AGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTG] HWI-EAS406:5:18:780:281#0 1 1 76 52165 52240 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:6:73:1413:1743#0 1 1 76 52166 52241 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:7:16:1149:400#0 1 1 76 52166 52241 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:5:57:651:1240#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:39:1129:669#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:73:857:713#0 1 1 76 52167 52242 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:5:85:1122:1536#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:77:576:1127#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:88:9:511#0 1 1 76 52169 52244 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:6:69:1740:1649#0 1 1 76 52172 52247 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:7:33:131:1634#0 1 1 76 52172 52247 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:5:73:54:1105#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:6:83:1007:1328#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:24:1321:2010#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:33:262:1157#0 1 1 76 52173 52248 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:5:32:335:1336#0 1 1 76 52174 52249 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:7:92:1537:1436#0 1 1 76 52174 52249 [TCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACA] HWI-EAS406:6:39:815:1207#0 1 1 76 52175 52250 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:5:46:793:1726#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:12:251:705#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:31:1436:1202#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:62:333:1365#0 1 1 76 52176 52251 [CATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAAC] HWI-EAS406:5:23:1574:1413#0 1 1 76 52177 52252 [ATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACT] HWI-EAS406:7:40:531:470#0 1 1 76 52178 52253 [TTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTT] HWI-EAS406:7:45:1616:849#0 1 1 76 52179 52254 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:6:92:1396:1272#0 1 1 76 52180 52255 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:7:26:833:1510#0 1 1 76 52180 52255 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:16:1380:1086#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:59:1530:1196#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:87:1126:429#0 1 1 76 52181 52256 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:24:1147:1664#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:50:815:1716#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:59:938:1038#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:6:24:422:883#0 1 1 76 52182 52257 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:5:22:1548:492#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:70:166:1464#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:74:652:283#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:82:460:1457#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:7:11:567:915#0 1 1 76 52184 52259 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:5:75:1704:1180#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:6:76:954:1728#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:7:85:664:780#0 1 1 76 52186 52261 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:6:61:1372:634#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:13:523:1416#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:17:797:359#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:48:709:1660#0 1 1 76 52187 52262 [CGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAA] HWI-EAS406:6:88:356:1840#0 1 1 76 52189 52264 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:5:76:727:1411#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:6:20:1545:1827#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:7:53:143:1483#0 1 1 76 52190 52265 [ACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATC] HWI-EAS406:5:90:738:799#0 1 1 76 52191 52266 [CCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCA] HWI-EAS406:7:88:1091:992#0 1 1 76 52192 52267 [CGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAG] HWI-EAS406:5:58:545:1977#0 1 1 76 52193 52268 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:5:97:592:546#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:19:774:1380#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:100:531:1821#0 1 1 76 52194 52269 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:6:569:1398#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:14:421:609#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:46:1004:1159#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:11:647:1264#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:40:521:1504#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:7:89:1047:871#0 1 1 76 52196 52271 [CCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACT] HWI-EAS406:6:51:982:888#0 1 1 76 52197 52272 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:5:25:136:113#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:41:735:977#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:80:329:1778#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:7:82:1261:1408#0 1 1 76 52198 52273 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:54:1022:1658#0 1 1 76 52200 52275 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:99:1131:851#0 1 1 76 52200 52275 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:2:135:1661#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:7:866:337#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:64:463:1458#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:5:1647:1482#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:84:176:462#0 1 1 76 52201 52276 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:5:34:505:1686#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:6:1746:427#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:25:1017:1385#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:7:35:1369:1740#0 1 1 76 52202 52277 [TTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAA] HWI-EAS406:5:51:532:1851#0 1 1 76 52203 52278 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:6:12:128:1246#0 1 1 76 52206 52281 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:7:87:839:52#0 1 1 76 52206 52281 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:17:760:1366#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:37:901:1209#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:7:80:963:1384#0 1 1 76 52208 52283 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:5:17:1550:1566#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:53:1580#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:65:1000#0 1 1 76 52209 52284 [TCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATC] HWI-EAS406:5:78:758:151#0 1 1 76 52210 52285 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:44:902:842#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:90:598:451#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:6:87:265:605#0 1 1 76 52211 52286 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:6:40:974:965#0 1 1 76 52212 52287 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:7:24:1732:457#0 1 1 76 52212 52287 [TAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAG] HWI-EAS406:7:6:88:1716#0 1 1 76 52213 52288 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:16:939:403#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:57:458:1574#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:58:1137:1204#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:7:83:260:373#0 1 1 76 52214 52289 [TGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAA] HWI-EAS406:5:29:552:681#0 1 1 76 52218 52293 [GGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACA] HWI-EAS406:7:52:1630:1850#0 1 1 76 52220 52295 [AATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAG] HWI-EAS406:7:1:673:233#0 1 1 76 52222 52297 [TCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTA] HWI-EAS406:7:60:720:349#0 1 1 76 52224 52299 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:5:37:1471:715#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:6:87:1099:551#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:32:296:209#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:34:730:917#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:40:1079:1925#0 1 1 76 52225 52300 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:5:28:502:1523#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:11:1160:1199#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:23:620:280#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:5:406:1479#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:23:1311:329#0 1 1 76 52227 52302 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:5:59:154:1118#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:6:4:1519:1520#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:7:13:1280:1416#0 1 1 76 52230 52305 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:34:1624:1554#0 1 1 76 52231 52306 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:64:291:995#0 1 1 76 52231 52306 [CCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTT] HWI-EAS406:5:29:1240:1061#0 1 1 76 52233 52308 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:54:1258:578#0 1 1 76 52234 52309 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:71:1016:982#0 1 1 76 52234 52309 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:5:82:1040:1850#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:23:1181:492#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:76:1486:1891#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:7:52:643:2006#0 1 1 76 52236 52311 [GTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTC] HWI-EAS406:5:67:876:1061#0 1 1 76 52238 52313 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:6:99:364:1232#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:14:1418:1067#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:39:427:1772#0 1 1 76 52240 52315 [GCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAG] HWI-EAS406:5:35:1482:512#0 1 1 76 52241 52316 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:5:12:711:509#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:6:22:715:265#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:7:98:1452:2014#0 1 1 76 52242 52317 [AGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAG] HWI-EAS406:5:11:996:1746#0 1 1 76 52243 52318 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:86:758:1262#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:98:1007:1105#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:34:441:1191#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:83:773:524#0 1 1 76 52245 52320 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:6:23:1360:584#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:65:1518:1039#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:78:1116:1370#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:97:810:1277#0 1 1 76 52246 52321 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:30:537:400#0 1 1 76 52247 52322 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:43:275:744#0 1 1 76 52247 52322 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:5:13:919:1120#0 1 1 76 52248 52323 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:6:25:1022:1875#0 1 1 76 52248 52323 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:1:1367:996#0 1 1 76 52249 52324 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:14:1324:228#0 1 1 76 52249 52324 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:5:5:821:1497#0 1 1 76 52250 52325 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:7:6:193:1715#0 1 1 76 52250 52325 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:5:78:433:497#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:6:52:591:654#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:35:1338:991#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:56:524:1938#0 1 1 76 52251 52326 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:6:68:1629:2018#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:21:978:238#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:64:586:999#0 1 1 76 52252 52327 [TTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTG] HWI-EAS406:6:47:1172:963#0 1 1 76 52253 52328 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:11:1163:662#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:36:494:638#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:7:70:268:1648#0 1 1 76 52254 52329 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:7:1315:1936#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:29:913:1247#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:61:740:1158#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:6:5:187:357#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:4:282:595#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:12:213:2011#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:78:1244:1499#0 1 1 76 52255 52330 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:62:1474:1477#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:73:667:2#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:29:1569:1233#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:61:153:379#0 1 1 76 52256 52331 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:5:90:921:863#0 1 1 76 52257 52332 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:7:31:409:762#0 1 1 76 52257 52332 [GATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCAC] HWI-EAS406:5:45:1329:265#0 1 1 76 52258 52333 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:5:84:1096:658#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:6:76:1047:245#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:18:1148:2023#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:58:1579:1747#0 1 1 76 52259 52334 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:13:590:1308#0 1 1 76 52260 52335 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:71:1211:959#0 1 1 76 52260 52335 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:48:774:839#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:64:134:629#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:7:40:1581:1123#0 1 1 76 52261 52336 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:17:691:1717#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:31:1311:911#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:71:1388:1286#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:15:1153:993#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:69:684:116#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:79:930:176#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:7:16:681:551#0 1 1 76 52262 52337 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:6:83:1596:302#0 1 1 76 52263 52338 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:7:38:1664:916#0 1 1 76 52263 52338 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:5:7:1046:440#0 1 1 76 52264 52339 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:6:37:1487:1516#0 1 1 76 52264 52339 [TCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACA] HWI-EAS406:7:8:666:1502#0 1 1 76 52265 52340 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:25:334:146#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:38:1366:1989#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:52:746:552#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:53:1240:1041#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:68:1437:1987#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:85:323:1728#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:93:1121:225#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:11:1389:1554#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:49:1419:608#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:71:1174:1073#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:7:75:951:1345#0 1 1 76 52266 52341 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:15:947:1923#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:17:1464:1199#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:13:943:1893#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:71:346:1276#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:93:161:1371#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:94:1100:882#0 1 1 76 52267 52342 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:5:86:281:653#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:19:674:714#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:48:1353:1724#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:7:29:1542:1037#0 1 1 76 52268 52343 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:5:86:810:1629#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:34:1378:1501#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:64:183:1239#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:7:22:450:1492#0 1 1 76 52269 52344 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:5:14:1646:1734#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:6:83:1746:217#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:49:522:970#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:84:887:295#0 1 1 76 52270 52345 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:5:49:1017:1244#0 1 1 76 52271 52346 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:7:80:842:1267#0 1 1 76 52271 52346 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:23:629:1683#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:60:1493:1305#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:68:630:343#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:28:1402:643#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:68:300:1753#0 1 1 76 52272 52347 [CCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGAC] HWI-EAS406:7:77:1303:1334#0 1 1 76 52273 52348 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:24:1412:1968#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:87:579:655#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:7:59:1571:1671#0 1 1 76 52274 52349 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:27:888:654#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:44:1426:967#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:6:9:915:1768#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:43:1353:349#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:57:923:841#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:80:1425:1717#0 1 1 76 52276 52351 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:4:195:1410#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:10:640:255#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:53:346:769#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:7:85:1068:1802#0 1 1 76 52277 52352 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:5:7:123:677#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:6:91:376:1230#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:7:61:1752:1817#0 1 1 76 52278 52353 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:52:527:1818#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:98:806:313#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:21:1167:455#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:50:1317:1946#0 1 1 76 52279 52354 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:6:96:484:1269#0 1 1 76 52280 52355 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:7:52:1223:1795#0 1 1 76 52280 52355 [GATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGT] HWI-EAS406:6:62:601:1096#0 1 1 76 52282 52357 [ATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTG] HWI-EAS406:7:40:673:1073#0 1 1 76 52283 52358 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:28:714:1051#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:46:1063:1975#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:6:36:660:431#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:7:6:1104:1516#0 1 1 76 52284 52359 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:3:1687:1148#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:92:222:1451#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:54:1624:322#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:77:293:1567#0 1 1 76 52285 52360 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:5:15:1334:1117#0 1 1 76 52286 52361 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:6:95:1198:1326#0 1 1 76 52286 52361 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:13:1280:1125#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:30:1591:708#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:37:976:1723#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:24:1169:1420#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:95:251:372#0 1 1 76 52287 52362 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:5:55:1530:1535#0 1 1 76 52288 52363 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:6:59:506:348#0 1 1 76 52288 52363 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:5:79:394:1921#0 1 1 76 52290 52365 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:6:36:739:479#0 1 1 76 52290 52365 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:5:59:301:1567#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:6:1691:1668#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:89:544:1361#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:36:845:1416#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:78:917:801#0 1 1 76 52292 52367 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:5:78:1278:1860#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:6:30:59:1461#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:7:19:811:1021#0 1 1 76 52293 52368 [CAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAA] HWI-EAS406:7:38:1739:351#0 1 1 76 52294 52369 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:39:1693:773#0 1 1 76 52296 52371 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:72:1492:975#0 1 1 76 52296 52371 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:9:513:554#0 1 1 76 52297 52372 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:80:1083:780#0 1 1 76 52297 52372 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:5:1:896:595#0 1 1 76 52298 52373 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:7:67:565:904#0 1 1 76 52298 52373 [ATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAA] HWI-EAS406:5:74:1730:1358#0 1 1 76 52299 52374 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:24:498:151#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:33:1187:650#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:89:327:810#0 1 1 76 52300 52375 [CATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATG] HWI-EAS406:7:11:955:1706#0 1 1 76 52301 52376 [ATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGG] HWI-EAS406:5:1:1774:1615#0 1 1 76 52302 52377 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:79:357:290#0 1 1 76 52303 52378 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:86:1242:822#0 1 1 76 52303 52378 [GGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTG] HWI-EAS406:5:5:1401:1725#0 1 1 76 52304 52379 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:70:1431:96#0 1 1 76 52305 52380 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:83:1673:880#0 1 1 76 52305 52380 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:54:954:1475#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:79:159:1997#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:7:91:139:1980#0 1 1 76 52306 52381 [TTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGT] HWI-EAS406:7:84:983:1321#0 1 1 76 52307 52382 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:5:79:1745:1147#0 1 1 76 52308 52383 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:6:22:1189:680#0 1 1 76 52308 52383 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:21:547:416#0 1 1 76 52309 52384 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:92:1137:1402#0 1 1 76 52309 52384 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:6:785:515#0 1 1 76 52310 52385 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:72:1490:50#0 1 1 76 52310 52385 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:43:1006:992#0 1 1 76 52311 52386 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:56:1090:611#0 1 1 76 52311 52386 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:24:233:961#0 1 1 76 52312 52387 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:95:972:973#0 1 1 76 52312 52387 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:5:17:303:965#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:14:1260:460#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:30:551:90#0 1 1 76 52313 52388 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:5:37:1278:1788#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:33:930:1428#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:62:1218:840#0 1 1 76 52314 52389 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:64:270:680#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:75:1545:33#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:11:1735:332#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:54:496:1518#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:56:778:387#0 1 1 76 52315 52390 [AGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGC] HWI-EAS406:6:94:1246:1663#0 1 1 76 52317 52392 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:6:42:1509:946#0 1 1 76 52319 52394 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:7:50:929:653#0 1 1 76 52319 52394 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:6:61:1298:1596#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:52:717:1780#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:76:1646:1467#0 1 1 76 52320 52395 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:6:66:392:1831#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:76:668:942#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:79:214:1087#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:99:685:562#0 1 1 76 52322 52397 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:78:1623:1950#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:85:1401:153#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:6:37:1677:1094#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:53:617:1394#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:60:92:692#0 1 1 76 52323 52398 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:66:1756:1393#0 1 1 76 52324 52399 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:99:386:1047#0 1 1 76 52324 52399 [TTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCT] HWI-EAS406:7:65:383:1927#0 1 1 76 52326 52401 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:4:654:477#0 1 1 76 52327 52402 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:71:185:1268#0 1 1 76 52327 52402 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:5:9:857:1601#0 1 1 76 52328 52403 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:6:87:352:1381#0 1 1 76 52328 52403 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:62:1384:1693#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:99:1383:725#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:7:15:993:1349#0 1 1 76 52329 52404 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:5:86:1430:15#0 1 1 76 52330 52405 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:6:68:792:418#0 1 1 76 52330 52405 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:14:1447:825#0 1 1 76 52331 52406 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:15:1080:1881#0 1 1 76 52331 52406 [ACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCT] HWI-EAS406:5:15:1215:481#0 1 1 76 52332 52407 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:5:19:722:1722#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:6:18:963:285#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:7:49:628:1029#0 1 1 76 52333 52408 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:35:1298:1838#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:37:496:730#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:17:1341:371#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:46:1262:1804#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:48:776:786#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:26:623:605#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:82:1533:327#0 1 1 76 52334 52409 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:5:71:648:1749#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:6:1574:1798#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:98:1452:1598#0 1 1 76 52335 52410 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:20:291:1335#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:26:813:679#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:76:1715:954#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:82:1081:1905#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:83:672:1351#0 1 1 76 52336 52411 [GACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCC] HWI-EAS406:6:26:79:1984#0 1 1 76 52337 52412 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:8:1766:1437#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:48:517:851#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:38:1169:1242#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:48:713:1735#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:7:73:1464:1506#0 1 1 76 52338 52413 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:5:6:196:217#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:12:911:698#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:62:1681:703#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:82:724:1281#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:54:940:1383#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:76:1666:962#0 1 1 76 52340 52415 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:5:65:411:1394#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:6:35:519:177#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:7:83:606:14#0 1 1 76 52341 52416 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:6:37:1476:639#0 1 1 76 52342 52417 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:7:65:672:108#0 1 1 76 52342 52417 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:45:282:1760#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:80:1605:805#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:38:196:252#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:55:1424:1623#0 1 1 76 52343 52418 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:5:4:820:1980#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:33:617:236#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:76:1431:640#0 1 1 76 52344 52419 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:63:689:473#0 1 1 76 52346 52421 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:82:1672:1506#0 1 1 76 52346 52421 [ACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTT] HWI-EAS406:7:87:1378:1986#0 1 1 76 52347 52422 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:6:18:104:1732#0 1 1 76 52348 52423 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:7:85:742:826#0 1 1 76 52348 52423 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:78:277:975#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:86:1514:1063#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:98:1616:938#0 1 1 76 52349 52424 [GCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGG] HWI-EAS406:5:53:372:990#0 1 1 76 52350 52425 [CTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGG] HWI-EAS406:7:88:322:659#0 1 1 76 52351 52426 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:80:77:1738#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:99:1630:380#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:7:28:15:1735#0 1 1 76 52352 52427 [ACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGA] HWI-EAS406:7:2:976:627#0 1 1 76 52353 52428 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:5:60:513:1239#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:6:77:603:1284#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:28:570:1220#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:52:511:1590#0 1 1 76 52354 52429 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:2:1424:581#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:30:673:873#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:70:1713:1317#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:83:833:377#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:7:8:368:1271#0 1 1 76 52355 52430 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:5:49:452:1791#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:6:66:1354:1650#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:7:67:1470:1467#0 1 1 76 52356 52431 [GGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGC] HWI-EAS406:7:57:1013:941#0 1 1 76 52359 52434 [GTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCA] HWI-EAS406:6:22:1141:882#0 1 1 76 52360 52435 [TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCAC] HWI-EAS406:7:86:123:1529#0 1 1 76 52361 52436 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:5:60:1506:520#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:6:53:1668:1315#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:42:853:1654#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:45:987:603#0 1 1 76 52362 52437 [GTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGT] HWI-EAS406:7:39:1343:1585#0 1 1 76 52363 52438 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:5:63:9:408#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:23:683:1669#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:33:330:1673#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:56:1406:957#0 1 1 76 52365 52440 [AAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTG] HWI-EAS406:7:16:1679:536#0 1 1 76 52368 52443 [AACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGG] HWI-EAS406:5:90:999:2029#0 1 1 76 52369 52444 [ACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGG] HWI-EAS406:7:11:1490:1402#0 1 1 76 52370 52445 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:5:38:1343:184#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:6:21:1412:1644#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:2:1141:279#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:93:349:1860#0 1 1 76 52371 52446 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:5:83:994:1882#0 1 1 76 52372 52447 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:6:77:942:1146#0 1 1 76 52372 52447 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:5:82:1760:1734#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:32:555:593#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:99:160:1579#0 1 1 76 52373 52448 [ATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAA] HWI-EAS406:5:6:1045:336#0 1 1 76 52374 52449 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:5:40:1182:762#0 1 1 76 52375 52450 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:7:45:1790:2027#0 1 1 76 52375 52450 [TGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCT] HWI-EAS406:6:30:1244:1033#0 1 1 76 52378 52453 [TGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCT] HWI-EAS406:6:25:672:873#0 1 1 76 52380 52455 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:6:15:850:569#0 1 1 76 52381 52456 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:7:82:1566:1600#0 1 1 76 52381 52456 [TCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTAC] HWI-EAS406:5:96:993:668#0 1 1 76 52382 52457 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:5:1335:234#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:8:634:1148#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:48:1364:606#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:83:286:788#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:6:46:1265:853#0 1 1 76 52383 52458 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:6:97:1422:276#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:30:1373:1336#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:91:1638:634#0 1 1 76 52384 52459 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:6:30:1107:1555#0 1 1 76 52385 52460 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:7:62:403:725#0 1 1 76 52385 52460 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:6:97:210:575#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:8:768:1918#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:18:744:577#0 1 1 76 52389 52464 [TGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGAC] HWI-EAS406:6:12:1033:288#0 1 1 76 52390 52465 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:44:1286:914#0 1 1 76 52391 52466 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:99:75:238#0 1 1 76 52391 52466 [CTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCC] HWI-EAS406:7:25:1534:1288#0 1 1 76 52393 52468 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:5:92:1021:315#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:6:22:939:1557#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:7:42:1700:1551#0 1 1 76 52395 52470 [AAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATC] HWI-EAS406:5:99:281:1040#0 1 1 76 52396 52471 [TCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTAC] HWI-EAS406:5:22:934:1120#0 1 1 76 52401 52476 [CAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACT] HWI-EAS406:6:72:438:93#0 1 1 76 52402 52477 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:5:44:953:153#0 1 1 76 52404 52479 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:7:92:1274:1315#0 1 1 76 52404 52479 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:13:34:1242#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:85:208:1122#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:7:43:587:413#0 1 1 76 52406 52481 [TATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGA] HWI-EAS406:6:47:845:736#0 1 1 76 52407 52482 [TTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATG] HWI-EAS406:7:90:897:1890#0 1 1 76 52409 52484 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:5:50:917:1976#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:6:46:1501:1311#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:35:1049:1828#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:91:943:1527#0 1 1 76 52410 52485 [CCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGAC] HWI-EAS406:5:79:515:1833#0 1 1 76 52411 52486 [CCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACT] HWI-EAS406:6:53:1426:1923#0 1 1 76 52412 52487 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:4:316:253#0 1 1 76 52413 52488 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:26:157:281#0 1 1 76 52413 52488 [TTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCA] HWI-EAS406:5:69:281:1963#0 1 1 76 52415 52490 [TCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAA] HWI-EAS406:5:26:250:604#0 1 1 76 52416 52491 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:33:965:904#0 1 1 76 52418 52493 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:34:525:990#0 1 1 76 52418 52493 [CTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAA] HWI-EAS406:7:88:734:166#0 1 1 76 52419 52494 [TTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAG] HWI-EAS406:7:36:631:1873#0 1 1 76 52421 52496 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:12:1159:384#0 1 1 76 52422 52497 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:83:1161:1426#0 1 1 76 52422 52497 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:6:90:771:1361#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:41:910:1083#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:70:99:1689#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:77:1174:839#0 1 1 76 52423 52498 [GGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT] HWI-EAS406:7:63:1480:724#0 1 1 76 52425 52500 [GGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTC] HWI-EAS406:7:77:1453:1511#0 1 1 76 52426 52501 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:6:26:1732:1025#0 1 1 76 52427 52502 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:7:97:947:1880#0 1 1 76 52427 52502 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:6:35:171:1900#0 1 1 76 52428 52503 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:7:88:334:545#0 1 1 76 52428 52503 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:5:66:1234:1609#0 1 1 76 52429 52504 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:7:92:1680:921#0 1 1 76 52429 52504 [AAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGG] HWI-EAS406:7:52:1570:713#0 1 1 76 52430 52505 [AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGA] HWI-EAS406:5:32:715:488#0 1 1 76 52431 52506 [GGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAG] HWI-EAS406:5:9:811:1156#0 1 1 76 52432 52507 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:45:1657:1532#0 1 1 76 52435 52510 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:98:1786:481#0 1 1 76 52435 52510 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:5:68:760:968#0 1 1 76 52436 52511 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:6:68:1440:1647#0 1 1 76 52436 52511 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:6:46:903:1877#0 1 1 76 52437 52512 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:7:19:367:1436#0 1 1 76 52437 52512 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:5:66:28:1446#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:6:34:464:783#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:7:15:604:1090#0 1 1 76 52438 52513 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:13:348:1033#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:87:1295:1803#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:7:64:1047:978#0 1 1 76 52439 52514 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:5:16:182:749#0 1 1 76 52440 52515 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:6:24:199:363#0 1 1 76 52440 52515 [GTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTC] HWI-EAS406:6:16:164:1853#0 1 1 76 52441 52516 [TGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCT] HWI-EAS406:5:43:513:1459#0 1 1 76 52442 52517 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:6:21:1418:1301#0 1 1 76 52443 52518 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:7:70:905:646#0 1 1 76 52443 52518 [GGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCT] HWI-EAS406:6:35:1341:1497#0 1 1 76 52444 52519 [GAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTA] HWI-EAS406:6:28:1743:1594#0 1 1 76 52445 52520 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:5:6:112:390#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:6:24:879:466#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:7:73:1724:1685#0 1 1 76 52446 52521 [AGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTC] HWI-EAS406:7:94:1324:697#0 1 1 76 52449 52524 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:5:11:1687:764#0 1 1 76 52450 52525 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:7:38:116:123#0 1 1 76 52450 52525 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:40:1410:892#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:76:340:1910#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:36:364:1516#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:70:1047:873#0 1 1 76 52451 52526 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:74:787:283#0 1 1 76 52452 52527 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:89:834:1558#0 1 1 76 52452 52527 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:49:1334:1952#0 1 1 76 52453 52528 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:65:263:1491#0 1 1 76 52453 52528 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:5:78:957:1758#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:30:646:977#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:50:1090:503#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:7:43:158:1802#0 1 1 76 52454 52529 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:13:446:1928#0 1 1 76 52456 52531 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:83:1509:904#0 1 1 76 52456 52531 [CCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTG] HWI-EAS406:6:18:602:671#0 1 1 76 52457 52532 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:5:69:1041:132#0 1 1 76 52458 52533 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:6:86:1678:830#0 1 1 76 52458 52533 [CAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCT] HWI-EAS406:6:76:425:734#0 1 1 76 52459 52534 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1369:1448#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1370:1450#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:15:386:1653#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:45:1743:1797#0 1 1 76 52460 52535 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:5:63:157:339#0 1 1 76 52461 52536 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:6:99:151:1752#0 1 1 76 52461 52536 [TGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAG] HWI-EAS406:5:21:74:623#0 1 1 76 52462 52537 [GACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGC] HWI-EAS406:7:3:1765:1463#0 1 1 76 52463 52538 [ACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCT] HWI-EAS406:5:100:867:1403#0 1 1 76 52464 52539 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:5:21:1694:986#0 1 1 76 52465 52540 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:6:23:243:1026#0 1 1 76 52465 52540 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:6:73:769:554#0 1 1 76 52466 52541 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:7:33:333:934#0 1 1 76 52466 52541 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:5:34:80:1647#0 1 1 76 52467 52542 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:7:18:104:733#0 1 1 76 52467 52542 [CATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGA] HWI-EAS406:7:71:1068:1574#0 1 1 76 52468 52543 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:50:1106:1240#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:58:316:1761#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:7:59:96:812#0 1 1 76 52469 52544 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:47:1287:1406#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:68:273:853#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:6:71:678:999#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:7:66:511:931#0 1 1 76 52470 52545 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:6:27:1712:1795#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:43:690:304#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:75:43:1636#0 1 1 76 52471 52546 [ACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACG] HWI-EAS406:7:31:1226:1513#0 1 1 76 52472 52547 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:5:67:1617:965#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:56:1266:96#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:74:1656:109#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:7:2:273:624#0 1 1 76 52473 52548 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:2:443:921#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:66:1335:1233#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:6:94:1634:1213#0 1 1 76 52474 52549 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:5:24:1147:1318#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:6:99:931:988#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:42:443:715#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:82:1415:1808#0 1 1 76 52475 52550 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:18:662:1862#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:26:691:1840#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:60:428:951#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:83:245:1659#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:6:32:791:1173#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:51:376:736#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:70:543:785#0 1 1 76 52476 52551 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:14:1386:1596#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:51:706:494#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:81:325:1398#0 1 1 76 52477 52552 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:5:34:122:1746#0 1 1 76 52478 52553 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:6:95:1264:1695#0 1 1 76 52478 52553 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:10:844:278#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:73:274:1502#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:7:43:327:1656#0 1 1 76 52479 52554 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:72:940:210#0 1 1 76 52480 52555 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:74:282:1963#0 1 1 76 52480 52555 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:41:1127:1992#0 1 1 76 52481 52556 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:74:253:671#0 1 1 76 52481 52556 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:6:74:1612:1102#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:15:103:280#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:28:942:1576#0 1 1 76 52482 52557 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:30:1082:1249#0 1 1 76 52483 52558 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:90:436:1780#0 1 1 76 52483 52558 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:10:964:478#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:21:804:471#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:6:37:1646:747#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:7:12:1579:1295#0 1 1 76 52484 52559 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:5:70:1191:63#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:32:1484:542#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:93:690:1159#0 1 1 76 52485 52560 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:88:794:359#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:95:1262:1246#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:6:11:608:389#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:7:7:665:1469#0 1 1 76 52487 52562 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:6:51:1748:924#0 1 1 76 52488 52563 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:7:38:312:1700#0 1 1 76 52488 52563 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:5:66:785:1132#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:6:48:1563:1761#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:31:879:269#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:68:1429:1697#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:70:1178:1056#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:98:194:426#0 1 1 76 52489 52564 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:18:834:2002#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:96:777:523#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:6:19:1451:79#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:9:796:694#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:45:1281:1591#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:72:162:2022#0 1 1 76 52490 52565 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:5:8:524:330#0 1 1 76 52491 52566 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:7:72:115:1689#0 1 1 76 52491 52566 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:6:83:1575:1953#0 1 1 76 52492 52567 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:7:16:697:657#0 1 1 76 52492 52567 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:5:57:1336:1073#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:878:959#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:1740:1330#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:32:1710:799#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:44:910:1817#0 1 1 76 52493 52568 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:5:13:1589:1763#0 1 1 76 52494 52569 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:7:62:164:886#0 1 1 76 52494 52569 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:28:1334:1780#0 1 1 76 52495 52570 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:57:682:1761#0 1 1 76 52495 52570 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:6:91:1101:1030#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:64:1205:794#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:78:1109:1#0 1 1 76 52496 52571 [CATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAA] HWI-EAS406:6:49:949:577#0 1 1 76 52497 52572 [ATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAAC] HWI-EAS406:5:63:1417:785#0 1 1 76 52498 52573 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:51:1518:1187#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:70:521:909#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:73:559:537#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:98:1445:897#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:8:1630:621#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:18:1287:928#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:35:659:1510#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:76:1054:1173#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:91:153:1178#0 1 1 76 52499 52574 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:29:1504:889#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:47:876:1309#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:51:1240:1263#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:7:3:329:1926#0 1 1 76 52500 52575 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:5:9:665:754#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:6:79:1515:1769#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:7:5:321:1398#0 1 1 76 52501 52576 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:10:448:847#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:84:939:302#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:6:4:605:946#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:10:1155:1736#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:35:1593:1354#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:90:1553:1930#0 1 1 76 52502 52577 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:5:97:42:1409#0 1 1 76 52503 52578 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:6:72:374:36#0 1 1 76 52503 52578 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:1:363:555#0 1 1 76 52504 52579 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:67:457:2017#0 1 1 76 52504 52579 [GAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAG] HWI-EAS406:7:96:993:1666#0 1 1 76 52505 52580 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:22:214:325#0 1 1 76 52506 52581 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:82:789:903#0 1 1 76 52506 52581 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:5:74:1338:1894#0 1 1 76 52507 52582 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:7:30:366:836#0 1 1 76 52507 52582 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:8:749:1123#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:53:88:1848#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:3:1646:1866#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:29:354:1197#0 1 1 76 52508 52583 [GTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTC] HWI-EAS406:6:15:1327:1024#0 1 1 76 52510 52585 [TTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCA] HWI-EAS406:5:98:1669:1163#0 1 1 76 52511 52586 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:13:588:1428#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:81:305:252#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:94:711:1778#0 1 1 76 52512 52587 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:5:72:446:1078#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:6:33:92:1092#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:7:66:493:314#0 1 1 76 52513 52588 [TTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTG] HWI-EAS406:7:8:360:1468#0 1 1 76 52514 52589 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:5:55:629:1181#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:10:957:369#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:63:1404:1267#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:67:377:1457#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:93:77:1511#0 1 1 76 52515 52590 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:8:919:1857#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:45:1692:468#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:72:1250:436#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:7:22:875:178#0 1 1 76 52516 52591 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:5:36:1193:1569#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:6:59:1446:981#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:7:33:864:49#0 1 1 76 52517 52592 [CTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGC] HWI-EAS406:6:75:1268:559#0 1 1 76 52518 52593 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:13:887:1017#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:77:991:1540#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:33:832:140#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:77:1261:1245#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:7:35:607:1366#0 1 1 76 52519 52594 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:5:47:873:1758#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:23:1537:1227#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1564:1847#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1731:835#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:61:1436:1032#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:79:913:1653#0 1 1 76 52520 52595 [CTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTG] HWI-EAS406:6:38:59:951#0 1 1 76 52521 52596 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:25:1507:1261#0 1 1 76 52522 52597 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:29:1214:1944#0 1 1 76 52522 52597 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:5:67:86:578#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:6:42:1774:1442#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:1:189:1556#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:10:1412:914#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:17:97:955#0 1 1 76 52524 52599 [AAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAG] HWI-EAS406:5:69:799:1623#0 1 1 76 52525 52600 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:35:1168:776#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:76:318:325#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:92:295:1460#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:6:26:712:900#0 1 1 76 52526 52601 [GAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAG] HWI-EAS406:6:89:257:1369#0 1 1 76 52527 52602 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:12:1206:1252#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:95:1686:1754#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:6:13:1570:968#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:7:36:769:1869#0 1 1 76 52528 52603 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:53:432:995#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:934:508#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:1447:59#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:7:92:513:1466#0 1 1 76 52529 52604 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:6:27:1121:1352#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:28:1475:1019#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:86:1641:7#0 1 1 76 52530 52605 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:6:25:1093:266#0 1 1 76 52531 52606 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:7:86:1284:1345#0 1 1 76 52531 52606 [GCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCA] HWI-EAS406:6:6:345:1154#0 1 1 76 52532 52607 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:62:493:202#0 1 1 76 52533 52608 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:88:725:714#0 1 1 76 52533 52608 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:12:1673:1480#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:20:46:301#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:42:1276:1476#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:7:73:376:1496#0 1 1 76 52534 52609 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:8:1375:1270#0 1 1 76 52535 52610 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:71:410:514#0 1 1 76 52535 52610 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:24:1366:388#0 1 1 76 52536 52611 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:33:223:1151#0 1 1 76 52536 52611 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:59:1075:1577#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:72:1351:1858#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:7:24:1725:638#0 1 1 76 52537 52612 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:6:79:313:934#0 1 1 76 52538 52613 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:7:87:1208:82#0 1 1 76 52538 52613 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:12:1396:1654#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:26:729:915#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:6:65:1510:1944#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:7:71:1744:1427#0 1 1 76 52539 52614 [GAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTAC] HWI-EAS406:5:13:538:853#0 1 1 76 52540 52615 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:5:25:1344:1201#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:23:1678:1177#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:71:97:1960#0 1 1 76 52541 52616 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:5:55:574:1991#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:6:79:1392:1059#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:7:29:1737:689#0 1 1 76 52542 52617 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:35:1523:1128#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:68:848:1372#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:7:82:274:1527#0 1 1 76 52543 52618 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:8:1602:1902#0 1 1 76 52544 52619 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:93:165:1467#0 1 1 76 52544 52619 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:26:1215:168#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:45:1150:1600#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:6:96:169:645#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:7:6:944:1625#0 1 1 76 52545 52620 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:5:76:1228:1139#0 1 1 76 52546 52621 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:7:68:484:916#0 1 1 76 52546 52621 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:5:59:565:1459#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:6:1459:340#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:77:1461:267#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:93:108:1063#0 1 1 76 52547 52622 [AGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCA] HWI-EAS406:5:95:924:1921#0 1 1 76 52548 52623 [GATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAA] HWI-EAS406:7:13:1035:1167#0 1 1 76 52549 52624 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:2:478:1202#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:80:1169:1125#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:90:1546:929#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:6:1:1764:573#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:7:63:671:1580#0 1 1 76 52550 52625 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:63:1087:724#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:71:1490:1081#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:6:364:512#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:98:1579:1040#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:25:655:1303#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:49:1462:290#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:61:491:22#0 1 1 76 52551 52626 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:56:87:1755#0 1 1 76 52552 52627 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:57:91:1117#0 1 1 76 52552 52627 [TCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCC] HWI-EAS406:6:63:377:361#0 1 1 76 52553 52628 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:41:1439:1817#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:76:350:1040#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:80:1498:578#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:7:98:180:949#0 1 1 76 52554 52629 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:5:51:1261:274#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:6:67:361:133#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:7:61:56:966#0 1 1 76 52555 52630 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:5:1159:616#0 1 1 76 52556 52631 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:66:83:1138#0 1 1 76 52556 52631 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:42:1311:1327#0 1 1 76 52557 52632 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:59:832:1813#0 1 1 76 52557 52632 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:40:532:318#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:84:807:560#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:7:61:992:1593#0 1 1 76 52559 52634 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:31:970:383#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:42:1351:1536#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:48:428:1071#0 1 1 76 52560 52635 [CAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATG] HWI-EAS406:6:48:1577:1480#0 1 1 76 52562 52637 [ACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGC] HWI-EAS406:7:15:1612:1112#0 1 1 76 52564 52639 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:49:1261:547#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:73:1762:1319#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:79:1561:507#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:98:1341:624#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:7:53:1535:371#0 1 1 76 52565 52640 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:5:54:400:458#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:6:67:510:1693#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:26:1299:1893#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:68:216:206#0 1 1 76 52566 52641 [GAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTT] HWI-EAS406:5:59:34:1592#0 1 1 76 52567 52642 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:5:16:972:45#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:11:371:1927#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:22:1573:1772#0 1 1 76 52568 52643 [AGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTC] HWI-EAS406:7:4:166:1389#0 1 1 76 52569 52644 [GAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCT] HWI-EAS406:6:57:1119:1514#0 1 1 76 52570 52645 [AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTA] HWI-EAS406:7:34:1780:1208#0 1 1 76 52571 52646 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:5:79:1307:885#0 1 1 76 52572 52647 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:6:28:1476:1985#0 1 1 76 52572 52647 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:5:89:602:1500#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:6:61:350:1908#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:7:99:1709:1108#0 1 1 76 52573 52648 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:6:39:1301:1592#0 1 1 76 52576 52651 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:7:93:355:996#0 1 1 76 52576 52651 [AAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAG] HWI-EAS406:7:44:589:1076#0 1 1 76 52578 52653 [CTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTA] HWI-EAS406:7:66:567:977#0 1 1 76 52582 52657 [AGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGA] HWI-EAS406:7:64:1507:1368#0 1 1 76 52586 52661 [TGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGC] HWI-EAS406:7:52:1280:1062#0 1 1 76 52588 52663 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:22:795:1941#0 1 1 76 52589 52664 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:26:284:1360#0 1 1 76 52589 52664 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:5:43:722:1079#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:5:111:1769#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:39:680:1003#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:7:66:210:1927#0 1 1 76 52590 52665 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:5:4:82:684#0 1 1 76 52591 52666 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:6:31:1437:1285#0 1 1 76 52591 52666 [CTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTC] HWI-EAS406:6:68:737:1957#0 1 1 76 52594 52669 [GGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTA] HWI-EAS406:7:43:1317:534#0 1 1 76 52596 52671 [GGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTAC] HWI-EAS406:7:18:1662:381#0 1 1 76 52597 52672 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:5:71:466:482#0 1 1 76 52600 52675 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:6:60:840:1286#0 1 1 76 52600 52675 [GATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGG] HWI-EAS406:6:54:1094:829#0 1 1 76 52602 52677 [ATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGT] HWI-EAS406:6:65:1104:543#0 1 1 76 52603 52678 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:3:262:446#0 1 1 76 52605 52680 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:99:1259:1454#0 1 1 76 52605 52680 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:5:64:878:239#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:6:2:290:554#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:7:71:1076:1486#0 1 1 76 52606 52681 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:5:80:232:812#0 1 1 76 52607 52682 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:7:98:704:841#0 1 1 76 52607 52682 [AGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCT] HWI-EAS406:7:8:1752:1537#0 1 1 76 52608 52683 [GGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTC] HWI-EAS406:7:79:360:885#0 1 1 76 52610 52685 [GCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCC] HWI-EAS406:7:74:1334:1841#0 1 1 76 52611 52686 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:5:84:1424:1849#0 1 1 76 52612 52687 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:6:67:1481:1218#0 1 1 76 52612 52687 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:28:1421:1393#0 1 1 76 52613 52688 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:35:949:1809#0 1 1 76 52613 52688 [AAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTA] HWI-EAS406:7:19:1321:1012#0 1 1 76 52617 52692 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:30:762:1326#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:84:672:1802#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:6:87:177:1204#0 1 1 76 52618 52693 [GCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACA] HWI-EAS406:5:84:1245:399#0 1 1 76 52619 52694 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:22:1430:399#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:73:930:335#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:7:27:1395:1095#0 1 1 76 52620 52695 [TCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGA] HWI-EAS406:6:25:1531:1308#0 1 1 76 52621 52696 [CAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAG] HWI-EAS406:5:60:329:1295#0 1 1 76 52622 52697 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1399:1567#0 1 1 76 52623 52698 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1401:1568#0 1 1 76 52623 52698 [CACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACT] HWI-EAS406:5:55:1359:18#0 1 1 76 52629 52704 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:5:60:1059:1422#0 1 1 76 52630 52705 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:6:4:537:1682#0 1 1 76 52630 52705 [CCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGG] HWI-EAS406:6:68:446:775#0 1 1 76 52631 52706 [CCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGAT] HWI-EAS406:5:77:1513:381#0 1 1 76 52633 52708 [CATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATA] HWI-EAS406:6:32:1019:1170#0 1 1 76 52634 52709 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:27:1235:1180#0 1 1 76 52635 52710 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:64:181:772#0 1 1 76 52635 52710 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:38:595:2023#0 1 1 76 52636 52711 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:67:901:893#0 1 1 76 52636 52711 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:6:11:874:891#0 1 1 76 52638 52713 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:7:73:1469:541#0 1 1 76 52638 52713 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:64:441:449#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:68:357:988#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:95:433:1083#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:7:9:1061:1695#0 1 1 76 52639 52714 [TTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTA] HWI-EAS406:7:9:910:60#0 1 1 76 52640 52715 [TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAG] HWI-EAS406:6:53:370:1905#0 1 1 76 52641 52716 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:28:140:1966#0 1 1 76 52646 52721 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:37:692:1780#0 1 1 76 52646 52721 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:5:47:548:1945#0 1 1 76 52647 52722 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:7:77:851:1718#0 1 1 76 52647 52722 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:5:13:1567:1317#0 1 1 76 52648 52723 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:6:10:96:380#0 1 1 76 52648 52723 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:5:76:738:1384#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:35:1399:224#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:94:182:673#0 1 1 76 52650 52725 [GAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTC] HWI-EAS406:6:22:1505:677#0 1 1 76 52651 52726 [AGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCT] HWI-EAS406:6:13:813:876#0 1 1 76 52652 52727 [GCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTT] HWI-EAS406:5:61:462:1645#0 1 1 76 52653 52728 [TTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCT] HWI-EAS406:7:85:795:1004#0 1 1 76 52655 52730 [TACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTT] HWI-EAS406:7:56:851:23#0 1 1 76 52656 52731 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:5:6:1008:413#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:6:51:585:982#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:7:23:336:1844#0 1 1 76 52657 52732 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:5:16:411:1866#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:20:546:48#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:24:1344:1284#0 1 1 76 52658 52733 [TGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGG] HWI-EAS406:5:26:156:1919#0 1 1 76 52659 52734 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:5:19:1560:1097#0 1 1 76 52660 52735 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:7:16:1163:1496#0 1 1 76 52660 52735 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:27:433:1044#0 1 1 76 52661 52736 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:65:1044:297#0 1 1 76 52661 52736 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:66:824:745#0 1 1 76 52662 52737 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:72:187:1085#0 1 1 76 52662 52737 [CACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGA] HWI-EAS406:7:36:1290:958#0 1 1 76 52663 52738 [ACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAA] HWI-EAS406:7:81:1719:703#0 1 1 76 52664 52739 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:12:1322:1927#0 1 1 76 52665 52740 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:74:1281:286#0 1 1 76 52665 52740 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:5:58:49:176#0 1 1 76 52666 52741 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:6:59:1083:530#0 1 1 76 52666 52741 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:38:80:785#0 1 1 76 52669 52744 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:91:1656:759#0 1 1 76 52669 52744 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:25:719:1348#0 1 1 76 52670 52745 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:32:814:32#0 1 1 76 52670 52745 [ACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGA] HWI-EAS406:7:1:1153:1584#0 1 1 76 52671 52746 [CCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAG] HWI-EAS406:5:14:755:1230#0 1 1 76 52672 52747 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:8:1435:965#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:55:660:4#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:7:19:932:1420#0 1 1 76 52674 52749 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:6:22:1593:317#0 1 1 76 52679 52754 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:7:44:1033:557#0 1 1 76 52679 52754 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:5:61:27:362#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:6:96:1530:676#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:47:1188:206#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:62:257:2014#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:100:1432:1531#0 1 1 76 52680 52755 [TCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAA] HWI-EAS406:7:63:827:1142#0 1 1 76 52681 52756 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:5:71:19:953#0 1 1 76 52682 52757 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:6:90:980:1734#0 1 1 76 52682 52757 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:75:1453:957#0 1 1 76 52683 52758 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:90:1220:1465#0 1 1 76 52683 52758 [TCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAG] HWI-EAS406:6:72:232:113#0 1 1 76 52684 52759 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:6:74:1465:21#0 1 1 76 52685 52760 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:7:35:1727:756#0 1 1 76 52685 52760 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:20:1116:1667#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:75:1545:1205#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:6:75:345:808#0 1 1 76 52686 52761 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:6:39:902:457#0 1 1 76 52687 52762 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:7:49:1144:1840#0 1 1 76 52687 52762 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:5:89:719:1932#0 1 1 76 52688 52763 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:7:49:1562:29#0 1 1 76 52688 52763 [AGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGT] HWI-EAS406:7:89:1328:1251#0 1 1 76 52689 52764 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:8:652:1592#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:9:1617:799#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:7:57:304:1400#0 1 1 76 52691 52766 [ACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGA] HWI-EAS406:5:74:1597:1977#0 1 1 76 52692 52767 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:6:3:1436:826#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:67:916:1425#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:82:300:1277#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:95:284:231#0 1 1 76 52693 52768 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:5:49:1356:1604#0 1 1 76 52695 52770 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:7:84:460:1196#0 1 1 76 52695 52770 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:5:31:397:693#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:48:789:839#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:78:308:217#0 1 1 76 52696 52771 [CCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACAT] HWI-EAS406:5:92:833:2028#0 1 1 76 52698 52773 [CAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATG] HWI-EAS406:7:92:954:996#0 1 1 76 52699 52774 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:5:65:165:1131#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:36:691:7#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:73:1136:500#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:96:1118:976#0 1 1 76 52700 52775 [ACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTA] HWI-EAS406:6:84:330:461#0 1 1 76 52702 52777 [CTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAA] HWI-EAS406:6:57:756:1865#0 1 1 76 52703 52778 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:5:85:86:1811#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:34:1489:1055#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:87:1313:1321#0 1 1 76 52704 52779 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:5:64:512:1642#0 1 1 76 52705 52780 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:7:17:769:337#0 1 1 76 52705 52780 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:5:66:981:1355#0 1 1 76 52706 52781 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:6:95:1395:605#0 1 1 76 52706 52781 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:6:54:371:1133#0 1 1 76 52709 52784 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:7:85:356:1379#0 1 1 76 52709 52784 [CAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGA] HWI-EAS406:5:33:1446:179#0 1 1 76 52710 52785 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:5:44:1170:794#0 1 1 76 52711 52786 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:7:100:474:1208#0 1 1 76 52711 52786 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:54:1730:327#0 1 1 76 52713 52788 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:90:27:1950#0 1 1 76 52713 52788 [CAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTC] HWI-EAS406:7:20:1428:1247#0 1 1 76 52717 52792 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:5:26:209:353#0 1 1 76 52718 52793 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:6:11:1176:1783#0 1 1 76 52718 52793 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:8:1579:696#0 1 1 76 52719 52794 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:38:1393:205#0 1 1 76 52719 52794 [GGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACA] HWI-EAS406:7:65:96:1531#0 1 1 76 52721 52796 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:5:69:547:743#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:6:28:1411:1934#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:7:7:1352:1238#0 1 1 76 52724 52799 [TCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGG] HWI-EAS406:6:68:1612:781#0 1 1 76 52725 52800 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:29:562:58#0 1 1 76 52730 52805 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:75:1431:401#0 1 1 76 52730 52805 [GGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACG] HWI-EAS406:5:6:754:1118#0 1 1 76 52733 52808 [GGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGA] HWI-EAS406:5:71:373:1022#0 1 1 76 52734 52809 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:20:289:1552#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:92:213:665#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:7:54:1760:1267#0 1 1 76 52735 52810 [AGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACA] HWI-EAS406:7:48:1621:1285#0 1 1 76 52736 52811 [AACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGA] HWI-EAS406:7:57:367:1568#0 1 1 76 52738 52813 [ACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAG] HWI-EAS406:6:57:1192:31#0 1 1 76 52739 52814 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:6:100:491:1058#0 1 1 76 52740 52815 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:7:12:213:1715#0 1 1 76 52740 52815 [GAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCA] HWI-EAS406:5:10:1671:1999#0 1 1 76 52742 52817 [AGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAG] HWI-EAS406:7:31:820:772#0 1 1 76 52743 52818 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:18:1108:1468#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:93:973:1263#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:6:54:325:1697#0 1 1 76 52747 52822 [GATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAA] HWI-EAS406:7:63:444:1270#0 1 1 76 52748 52823 [GCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAG] HWI-EAS406:5:18:996:2006#0 1 1 76 52751 52826 [AAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGA] HWI-EAS406:6:56:1047:1693#0 1 1 76 52755 52830 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:6:70:1271:681#0 1 1 76 52757 52832 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:7:89:353:1220#0 1 1 76 52757 52832 [GGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAG] HWI-EAS406:7:41:92:805#0 1 1 76 52762 52837 [GTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGA] HWI-EAS406:5:29:1681:802#0 1 1 76 52763 52838 [CAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGG] HWI-EAS406:7:36:675:850#0 1 1 76 52768 52843 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:601:809#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:820:932#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:6:27:885:1266#0 1 1 76 52769 52844 [CATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAA] HWI-EAS406:6:62:569:1444#0 1 1 76 52771 52846 [ATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAG] HWI-EAS406:7:30:95:1595#0 1 1 76 52772 52847 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:18:1770:316#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:55:911:1113#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:7:29:263:253#0 1 1 76 52773 52848 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:5:77:871:893#0 1 1 76 52774 52849 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:6:16:1436:1900#0 1 1 76 52774 52849 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:5:4:859:1091#0 1 1 76 52775 52850 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:7:29:1141:1851#0 1 1 76 52775 52850 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:6:26:595:1371#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:40:1232:1393#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:89:1396:1026#0 1 1 76 52776 52851 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:6:2:1627:472#0 1 1 76 52777 52852 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:7:99:636:1603#0 1 1 76 52777 52852 [AAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCA] HWI-EAS406:7:77:177:1715#0 1 1 76 52778 52853 [AGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAA] HWI-EAS406:7:100:309:1438#0 1 1 76 52779 52854 [GCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGG] HWI-EAS406:6:21:1395:910#0 1 1 76 52787 52862 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:5:59:145:1175#0 1 1 76 52792 52867 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:6:14:1246:1693#0 1 1 76 52792 52867 [ACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAA] HWI-EAS406:7:77:1713:1632#0 1 1 76 52794 52869 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:5:39:548:1024#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:38:1520:842#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:40:347:1850#0 1 1 76 52801 52876 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:6:89:742:643#0 1 1 76 52805 52880 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:7:75:1154:839#0 1 1 76 52805 52880 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:5:78:754:459#0 1 1 76 52806 52881 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:6:1:384:1591#0 1 1 76 52806 52881 [ACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCAT] HWI-EAS406:7:22:1375:1195#0 1 1 76 52809 52884 [CAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATT] HWI-EAS406:5:1:1719:1033#0 1 1 76 52810 52885 [GAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGC] HWI-EAS406:6:90:835:1482#0 1 1 76 52812 52887 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:5:24:136:1541#0 1 1 76 52815 52890 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:6:65:1614:1321#0 1 1 76 52815 52890 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:5:51:377:1153#0 1 1 76 52818 52893 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:7:66:266:1654#0 1 1 76 52818 52893 [AACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCA] HWI-EAS406:6:60:351:367#0 1 1 76 52822 52897 [ATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGA] HWI-EAS406:5:90:750:261#0 1 1 76 52830 52905 [TAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAG] HWI-EAS406:7:24:564:704#0 1 1 76 52831 52906 [AAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGC] HWI-EAS406:7:36:1312:1239#0 1 1 76 52832 52907 [GCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAG] HWI-EAS406:7:62:1248:1996#0 1 1 76 52834 52909 [AGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGT] HWI-EAS406:7:74:1634:372#0 1 1 76 52841 52916 [GAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTT] HWI-EAS406:5:24:1213:1202#0 1 1 76 52843 52918 [AAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTG] HWI-EAS406:5:17:1388:1409#0 1 1 76 52844 52919 [AGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTT] HWI-EAS406:7:67:1179:690#0 1 1 76 52846 52921 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:6:73:723:696#0 1 1 76 52849 52924 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:7:37:1631:1209#0 1 1 76 52849 52924 [ATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTA] HWI-EAS406:6:86:426:1963#0 1 1 76 52850 52925 [CAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAAC] HWI-EAS406:6:95:1476:426#0 1 1 76 52852 52927 [TTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAG] HWI-EAS406:6:67:1618:794#0 1 1 76 52858 52933 [TTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGC] HWI-EAS406:7:83:202:1767#0 1 1 76 52859 52934 [TGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCA] HWI-EAS406:7:68:1139:1819#0 1 1 76 52860 52935 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:6:68:1729:626#0 1 1 76 52863 52938 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:7:32:1013:1608#0 1 1 76 52863 52938 [GACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAG] HWI-EAS406:5:28:1506:37#0 1 1 76 52865 52940 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:5:15:1255:1708#0 1 1 76 52867 52942 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:7:81:1212:713#0 1 1 76 52867 52942 [AGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCC] HWI-EAS406:7:10:1250:1965#0 1 1 76 52869 52944 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:69:319:840#0 1 1 76 52874 52949 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:87:253:1053#0 1 1 76 52874 52949 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:45:113:1763#0 1 1 76 52878 52953 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:77:1188:580#0 1 1 76 52878 52953 [CTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCA] HWI-EAS406:5:5:491:1005#0 1 1 76 52880 52955 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:6:73:850:1573#0 1 1 76 52882 52957 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:7:82:431:428#0 1 1 76 52882 52957 [ATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATG] HWI-EAS406:6:78:691:1612#0 1 1 76 52883 52958 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:41:1719:1887#0 1 1 76 52884 52959 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:100:1346:1547#0 1 1 76 52884 52959 [TGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAG] HWI-EAS406:5:6:900:884#0 1 1 76 52885 52960 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:61:1086:1684#0 1 1 76 52886 52961 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:81:942:1767#0 1 1 76 52886 52961 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:5:769:2001#0 1 1 76 52888 52963 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:55:734:1718#0 1 1 76 52888 52963 [AAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAG] HWI-EAS406:7:84:1333:1560#0 1 1 76 52891 52966 [AAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGG] HWI-EAS406:6:18:443:1002#0 1 1 76 52892 52967 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:6:84:1247:1172#0 1 1 76 52893 52968 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:7:4:304:1492#0 1 1 76 52893 52968 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:11:1749:1681#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:31:1333:1527#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:63:113:503#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:80:1392:481#0 1 1 76 52894 52969 [GCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTT] HWI-EAS406:7:20:338:25#0 1 1 76 52895 52970 [CAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTT] HWI-EAS406:5:38:934:1502#0 1 1 76 52896 52971 [AACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTG] HWI-EAS406:5:85:776:1725#0 1 1 76 52897 52972 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:6:13:1228:1046#0 1 1 76 52898 52973 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:7:46:1190:1221#0 1 1 76 52898 52973 [CAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAG] HWI-EAS406:6:63:305:1144#0 1 1 76 52901 52976 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:6:48:1216:572#0 1 1 76 52902 52977 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:7:99:1265:274#0 1 1 76 52902 52977 [AGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGT] HWI-EAS406:6:11:1471:1239#0 1 1 76 52903 52978 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:20:1218:1653#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:100:1058:560#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:7:37:765:354#0 1 1 76 52904 52979 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:5:85:988:89#0 1 1 76 52907 52982 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:6:24:1088:1499#0 1 1 76 52907 52982 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:5:69:1278:1921#0 1 1 76 52908 52983 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:6:49:886:976#0 1 1 76 52908 52983 [GCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAG] HWI-EAS406:7:97:1262:733#0 1 1 76 52909 52984 [CTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGG] HWI-EAS406:7:80:873:1646#0 1 1 76 52910 52985 [TGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGA] HWI-EAS406:5:74:311:1222#0 1 1 76 52911 52986 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:2:1609:513#0 1 1 76 52912 52987 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:6:655:560#0 1 1 76 52912 52987 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:5:65:175:674#0 1 1 76 52914 52989 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:6:67:977:2#0 1 1 76 52914 52989 [TTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTG] HWI-EAS406:5:87:785:887#0 1 1 76 52917 52992 [TGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGT] HWI-EAS406:7:30:1447:1855#0 1 1 76 52918 52993 [GTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTT] HWI-EAS406:7:71:677:1038#0 1 1 76 52919 52994 [TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTC] HWI-EAS406:5:74:859:201#0 1 1 76 52921 52996 [TAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATC] HWI-EAS406:6:56:1319:796#0 1 1 76 52924 52999 [CTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAAC] HWI-EAS406:5:14:611:1579#0 1 1 76 52927 53002 [TCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACA] HWI-EAS406:7:38:1155:2035#0 1 1 76 52928 53003 [AAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACA] HWI-EAS406:7:8:283:983#0 1 1 76 52931 53006 [CAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATG] HWI-EAS406:7:25:45:1377#0 1 1 76 52934 53009 [AGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGG] HWI-EAS406:7:40:1449:1249#0 1 1 76 52935 53010 [GGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGT] HWI-EAS406:7:90:1220:1315#0 1 1 76 52936 53011 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:6:20:842:1693#0 1 1 76 52948 53023 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:7:76:1565:1995#0 1 1 76 52948 53023 [TCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGA] HWI-EAS406:7:59:1788:1538#0 1 1 76 52953 53028 [AGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCA] HWI-EAS406:6:20:1735:1047#0 1 1 76 52965 53040 [GTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTA] HWI-EAS406:6:94:939:1047#0 1 1 76 52968 53043 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:5:22:330:789#0 1 1 76 52979 53054 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:7:70:1669:163#0 1 1 76 52979 53054 [AGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAA] HWI-EAS406:6:34:1002:1940#0 1 1 76 52986 53061 [GTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAA] HWI-EAS406:7:22:1333:1659#0 1 1 76 52987 53062 [TGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATC] HWI-EAS406:7:71:625:1767#0 1 1 76 52989 53064 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:5:82:1551:1229#0 1 1 76 52990 53065 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:7:23:1642:1419#0 1 1 76 52990 53065 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:5:16:562:1965#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:6:34:665:833#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:7:70:203:1497#0 1 1 76 52991 53066 [GTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTA] HWI-EAS406:6:72:348:1278#0 1 1 76 52992 53067 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:10:766:1082#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:15:1036:645#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:70:488:482#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:97:1715:1971#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:7:17:1509:1035#0 1 1 76 52993 53068 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:5:86:82:1111#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:6:81:669:867#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:7:23:798:1374#0 1 1 76 52995 53070 [TCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAA] HWI-EAS406:6:9:928:223#0 1 1 76 52998 53073 [CAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAAC] HWI-EAS406:5:74:1187:1738#0 1 1 76 52999 53074 [AACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACA] HWI-EAS406:7:72:535:1762#0 1 1 76 53000 53075 [ACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAA] HWI-EAS406:6:67:691:451#0 1 1 76 53001 53076 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:6:10:1056:1388#0 1 1 76 53003 53078 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:7:67:1043:1053#0 1 1 76 53003 53078 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:26:1302:1511#0 1 1 76 53005 53080 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:96:1696:1630#0 1 1 76 53005 53080 [AATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAAC] HWI-EAS406:5:68:1329:1227#0 1 1 76 53006 53081 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:6:96:361:1171#0 1 1 76 53007 53082 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:7:66:1046:1538#0 1 1 76 53007 53082 [GTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAG] HWI-EAS406:6:5:1784:1359#0 1 1 76 53010 53085 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:6:85:984:1150#0 1 1 76 53013 53088 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:7:97:1335:1860#0 1 1 76 53013 53088 [CTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGC] HWI-EAS406:7:53:1507:1400#0 1 1 76 53014 53089 [ACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCC] HWI-EAS406:5:83:731:357#0 1 1 76 53019 53094 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:21:1623:1222#0 1 1 76 53020 53095 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:57:293:559#0 1 1 76 53020 53095 [AGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAG] HWI-EAS406:6:58:278:902#0 1 1 76 53025 53100 [AGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAA] HWI-EAS406:7:81:1340:993#0 1 1 76 53028 53103 [GCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAAC] HWI-EAS406:6:74:463:426#0 1 1 76 53029 53104 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:5:35:1464:1782#0 1 1 76 53032 53107 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:6:87:1247:611#0 1 1 76 53032 53107 [CTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAG] HWI-EAS406:6:76:1017:1131#0 1 1 76 53035 53110 [TTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGC] HWI-EAS406:6:33:1752:469#0 1 1 76 53036 53111 [TCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAA] HWI-EAS406:5:76:1166:1108#0 1 1 76 53038 53113 [ACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGG] HWI-EAS406:6:36:443:1615#0 1 1 76 53073 53148 [TGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCT] HWI-EAS406:6:59:1322:1397#0 1 1 76 53086 53161 [ATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGA] HWI-EAS406:7:89:825:731#0 1 1 76 53091 53166 [CGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAG] HWI-EAS406:6:77:994:1321#0 1 1 76 53094 53169 [CAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAG] HWI-EAS406:5:45:852:1913#0 1 1 76 53097 53172 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:6:10:326:468#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:56:1362:1475#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:72:1291:311#0 1 1 76 53108 53183 [AGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTG] HWI-EAS406:7:17:466:111#0 1 1 76 53113 53188 [TCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATC] HWI-EAS406:7:66:68:337#0 1 1 76 53122 53197 [TTGGAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCT] HWI-EAS406:6:82:241:1543#0 1 1 76 53198 53273 [GTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAA] HWI-EAS406:6:38:237:441#0 1 1 76 53217 53292 [GAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAAT] HWI-EAS406:7:19:1518:715#0 1 1 76 53219 53294 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:5:83:1397:1100#0 1 1 76 53220 53295 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:7:65:499:294#0 1 1 76 53220 53295 [GAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTC] HWI-EAS406:6:63:1490:915#0 1 1 76 53221 53296 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:5:59:1092:2030#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:6:47:258:1736#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:7:41:1735:1335#0 1 1 76 53222 53297 [AGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTC] HWI-EAS406:6:70:64:1370#0 1 1 76 53223 53298 [ACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACA] HWI-EAS406:7:6:486:803#0 1 1 76 53226 53301 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:5:52:1062:869#0 1 1 76 53229 53304 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:7:56:632:1389#0 1 1 76 53229 53304 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:6:85:1131:1902#0 1 1 76 53230 53305 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:7:12:938:467#0 1 1 76 53230 53305 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:17:718:33#0 1 1 76 53232 53307 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:61:110:1832#0 1 1 76 53232 53307 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:6:100:986:193#0 1 1 76 53234 53309 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:7:21:1696:587#0 1 1 76 53234 53309 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:20:380:87#0 1 1 76 53235 53310 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:42:431:1815#0 1 1 76 53235 53310 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:33:127:1815#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:96:508:870#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:7:52:798:712#0 1 1 76 53236 53311 [GAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTA] HWI-EAS406:5:56:1533:1579#0 1 1 76 53237 53312 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:5:72:1534:1868#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:6:30:1499:778#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:7:7:579:773#0 1 1 76 53238 53313 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:9:793:1263#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:58:1341:937#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:63:976:865#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:98:571:1639#0 1 1 76 53239 53314 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:8:1577:705#0 1 1 76 53240 53315 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:74:408:1585#0 1 1 76 53240 53315 [TGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGT] HWI-EAS406:7:99:179:769#0 1 1 76 53241 53316 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:29:408:1113#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:72:124:367#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:16:327:1812#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:59:789:1513#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:7:66:1416:1146#0 1 1 76 53242 53317 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:5:37:953:299#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:30:1613:1665#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:100:711:1721#0 1 1 76 53243 53318 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:5:7:38:1359#0 1 1 76 53244 53319 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:6:7:1476:1748#0 1 1 76 53244 53319 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:28:678:746#0 1 1 76 53245 53320 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:45:1088:583#0 1 1 76 53245 53320 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:5:43:1382:957#0 1 1 76 53248 53323 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:6:32:56:484#0 1 1 76 53248 53323 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:44:386:1988#0 1 1 76 53249 53324 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:78:14:1600#0 1 1 76 53249 53324 [ATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGA] HWI-EAS406:6:60:676:884#0 1 1 76 53253 53328 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:12:678:190#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:47:1560:929#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:76:1176:1214#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:84:1300:1222#0 1 1 76 53256 53331 [AGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCA] HWI-EAS406:6:71:506:1906#0 1 1 76 53259 53334 [TGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTT] HWI-EAS406:5:14:149:1789#0 1 1 76 53263 53338 [ATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC] HWI-EAS406:6:37:1358:195#0 1 1 76 53265 53340 [TGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCT] HWI-EAS406:7:26:892:1572#0 1 1 76 53266 53341 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:5:58:643:299#0 1 1 76 53268 53343 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:6:47:1677:1260#0 1 1 76 53268 53343 [AGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCA] HWI-EAS406:7:55:524:1341#0 1 1 76 53270 53345 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:6:5:673:143#0 1 1 76 53276 53351 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:7:38:1070:231#0 1 1 76 53276 53351 [TGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACT] HWI-EAS406:7:61:728:1124#0 1 1 76 53278 53353 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:6:94:67:550#0 1 1 76 53279 53354 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:7:25:1555:517#0 1 1 76 53279 53354 [CAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAAT] HWI-EAS406:5:26:1782:1487#0 1 1 76 53287 53362 [AACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATC] HWI-EAS406:7:99:1410:678#0 1 1 76 53288 53363 [ACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCG] HWI-EAS406:7:12:1549:1905#0 1 1 76 53289 53364 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:94:660:1298#0 1 1 76 53290 53365 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:99:486:564#0 1 1 76 53290 53365 [AAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCC] HWI-EAS406:7:6:1318:904#0 1 1 76 53291 53366 [ATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAG] HWI-EAS406:5:50:344:275#0 1 1 76 53293 53368 [CTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAA] HWI-EAS406:6:61:536:1994#0 1 1 76 53296 53371 [TCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAG] HWI-EAS406:6:96:1691:1669#0 1 1 76 53297 53372 [CACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGG] HWI-EAS406:6:53:756:1438#0 1 1 76 53298 53373 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:5:32:512:1543#0 1 1 76 53300 53375 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:6:43:1435:823#0 1 1 76 53300 53375 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:6:16:1107:1198#0 1 1 76 53301 53376 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:7:21:1350:1692#0 1 1 76 53301 53376 [CCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCT] HWI-EAS406:6:9:230:1428#0 1 1 76 53302 53377 [TGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTA] HWI-EAS406:7:72:258:511#0 1 1 76 53305 53380 [TCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTG] HWI-EAS406:5:33:1345:1342#0 1 1 76 53309 53384 [TACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGA] HWI-EAS406:6:37:614:157#0 1 1 76 53311 53386 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:5:12:1752:1462#0 1 1 76 53312 53387 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:6:95:1625:892#0 1 1 76 53312 53387 [AAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTG] HWI-EAS406:7:27:354:804#0 1 1 76 53318 53393 [GAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGAC] HWI-EAS406:6:70:639:1667#0 1 1 76 53320 53395 [AATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACC] HWI-EAS406:6:8:832:722#0 1 1 76 53321 53396 [TGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCC] HWI-EAS406:6:12:710:1058#0 1 1 76 53338 53413 [CTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCT] HWI-EAS406:5:68:1604:1414#0 1 1 76 53352 53427 [CAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGA] HWI-EAS406:5:91:987:915#0 1 1 76 53357 53432 [TCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGT] HWI-EAS406:6:5:1149:1954#0 1 1 76 53362 53437 [CTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTA] HWI-EAS406:5:60:619:1662#0 1 1 76 53378 53453 [CTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAA] HWI-EAS406:5:25:738:87#0 1 1 76 53391 53466 [ATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGA] HWI-EAS406:7:41:1398:1465#0 1 1 76 53400 53475 [CGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACA] HWI-EAS406:5:99:882:1541#0 1 1 76 53429 53504 [AAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATG] HWI-EAS406:5:76:867:129#0 1 1 76 53438 53513 [ACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTG] HWI-EAS406:6:2:219:1094#0 1 1 76 53446 53521 [TAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTT] HWI-EAS406:5:58:650:328#0 1 1 76 53452 53527 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:5:45:1430:1123#0 1 1 76 53453 53528 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:7:46:1727:1121#0 1 1 76 53453 53528 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:60:1355:1749#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:72:1061:265#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:7:64:701:178#0 1 1 76 53454 53529 [ACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATG] HWI-EAS406:6:66:935:30#0 1 1 76 53456 53531 [CCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGA] HWI-EAS406:7:90:175:1368#0 1 1 76 53457 53532 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:43:1033:1183#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:86:822:312#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:32:366:1628#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:34:1721:259#0 1 1 76 53459 53534 [ACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGA] HWI-EAS406:7:44:690:1265#0 1 1 76 53462 53537 [CAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATC] HWI-EAS406:5:67:1193:1073#0 1 1 76 53464 53539 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:8:155:1879#0 1 1 76 53465 53540 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:61:892:217#0 1 1 76 53465 53540 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:5:61:1148:844#0 1 1 76 53467 53542 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:6:35:343:246#0 1 1 76 53467 53542 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:5:53:944:1239#0 1 1 76 53468 53543 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:6:19:1066:506#0 1 1 76 53468 53543 [GCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACG] HWI-EAS406:6:10:1058:483#0 1 1 76 53471 53546 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:34:1558:316#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:82:902:561#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:49:1208:1985#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:55:1403:804#0 1 1 76 53473 53548 [AGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT] HWI-EAS406:6:67:1271:1581#0 1 1 76 53475 53550 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:26:1342:1423#0 1 1 76 53476 53551 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:59:1679:1352#0 1 1 76 53476 53551 [AACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTT] HWI-EAS406:6:40:298:405#0 1 1 76 53478 53553 [ACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTG] HWI-EAS406:7:40:1275:154#0 1 1 76 53479 53554 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:5:51:215:588#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:49:1215:1249#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:54:1111:713#0 1 1 76 53480 53555 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:5:58:471:1142#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:6:46:872:636#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:7:81:125:1639#0 1 1 76 53481 53556 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:6:64:68:1338#0 1 1 76 53483 53558 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:7:32:494:1816#0 1 1 76 53483 53558 [GAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGA] HWI-EAS406:7:37:986:1763#0 1 1 76 53486 53561 [AAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGAT] HWI-EAS406:6:60:434:400#0 1 1 76 53487 53562 [AGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATA] HWI-EAS406:7:72:380:1488#0 1 1 76 53488 53563 [GGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGT] HWI-EAS406:7:77:730:1986#0 1 1 76 53490 53565 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:38:1359:674#0 1 1 76 53491 53566 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:40:121:754#0 1 1 76 53491 53566 [GCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAG] HWI-EAS406:6:56:1672:1286#0 1 1 76 53495 53570 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:27:541:285#0 1 1 76 53497 53572 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:67:1267:726#0 1 1 76 53497 53572 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:58:1582:877#0 1 1 76 53498 53573 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:99:799:1909#0 1 1 76 53498 53573 [TCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAA] HWI-EAS406:5:34:903:1119#0 1 1 76 53499 53574 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:5:47:976:760#0 1 1 76 53500 53575 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:6:100:1728:1491#0 1 1 76 53500 53575 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:46:1677:934#0 1 1 76 53501 53576 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:65:1706:1307#0 1 1 76 53501 53576 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:5:40:1473:1219#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:25:1767:760#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:76:655:1635#0 1 1 76 53502 53577 [ATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTA] HWI-EAS406:5:82:1406:593#0 1 1 76 53504 53579 [AGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAA] HWI-EAS406:5:45:1177:936#0 1 1 76 53506 53581 [GATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAG] HWI-EAS406:6:99:1613:1584#0 1 1 76 53507 53582 [ATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGG] HWI-EAS406:5:60:546:1031#0 1 1 76 53508 53583 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:5:28:1177:1079#0 1 1 76 53510 53585 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:6:89:545:1190#0 1 1 76 53510 53585 [ATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAA] HWI-EAS406:5:46:927:1690#0 1 1 76 53511 53586 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:39:1424:980#0 1 1 76 53513 53588 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:48:1636:1321#0 1 1 76 53513 53588 [AAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGT] HWI-EAS406:7:72:421:1226#0 1 1 76 53514 53589 [GTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTG] HWI-EAS406:6:76:763:468#0 1 1 76 53516 53591 [TGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGA] HWI-EAS406:6:28:363:848#0 1 1 76 53520 53595 [TTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGA] HWI-EAS406:6:50:1325:1030#0 1 1 76 53523 53598 [TTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAA] HWI-EAS406:5:60:752:516#0 1 1 76 53526 53601 [ATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAA] HWI-EAS406:7:57:1111:208#0 1 1 76 53529 53604 [TGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAG] HWI-EAS406:7:58:1186:1368#0 1 1 76 53530 53605 [AGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGT] HWI-EAS406:6:38:1203:1137#0 1 1 76 53535 53610 [TGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGAT] HWI-EAS406:7:60:1055:895#0 1 1 76 53542 53617 [GTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAA] HWI-EAS406:5:37:314:959#0 1 1 76 53564 53639 [GTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTT] HWI-EAS406:6:58:1584:1523#0 1 1 76 53577 53652 [AAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCT] HWI-EAS406:7:56:1128:796#0 1 1 76 53584 53659 [TTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCC] HWI-EAS406:5:78:1362:1957#0 1 1 76 53589 53664 [AGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAA] HWI-EAS406:7:26:1321:1340#0 1 1 76 53596 53671 [AGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACC] HWI-EAS406:6:59:1045:1465#0 1 1 76 53598 53673 [GAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAA] HWI-EAS406:6:59:1115:1324#0 1 1 76 53602 53677 [TGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGT] HWI-EAS406:5:44:1561:461#0 1 1 76 53617 53692 [GTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCA] HWI-EAS406:7:7:1186:571#0 1 1 76 53624 53699 [TTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAA] HWI-EAS406:7:61:615:1410#0 1 1 76 53625 53700 [CTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCA] HWI-EAS406:7:32:1742:1156#0 1 1 76 53631 53706 [TCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAG] HWI-EAS406:7:57:904:1288#0 1 1 76 53632 53707 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:57:977:906#0 1 1 76 53633 53708 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:88:469:1148#0 1 1 76 53633 53708 [AGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTG] HWI-EAS406:5:51:343:874#0 1 1 76 53635 53710 [CAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCT] HWI-EAS406:6:44:408:1803#0 1 1 76 53637 53712 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:62:1018:1623#0 1 1 76 53638 53713 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:96:568:2003#0 1 1 76 53638 53713 [TGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAG] HWI-EAS406:7:49:1058:1502#0 1 1 76 53641 53716 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:6:10:647:218#0 1 1 76 53644 53719 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:7:93:191:976#0 1 1 76 53644 53719 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:5:24:806:1332#0 1 1 76 53645 53720 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:7:15:333:1636#0 1 1 76 53645 53720 [GTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTA] HWI-EAS406:5:57:1370:747#0 1 1 76 53646 53721 [TCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACA] HWI-EAS406:5:47:743:680#0 1 1 76 53648 53723 [TTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGC] HWI-EAS406:5:67:696:746#0 1 1 76 53652 53727 [TGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCT] HWI-EAS406:7:18:266:1402#0 1 1 76 53653 53728 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:5:51:775:1299#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:6:32:153:1345#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:7:49:1150:1267#0 1 1 76 53654 53729 [TCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTG] HWI-EAS406:6:64:1753:1014#0 1 1 76 53656 53731 [CTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTG] HWI-EAS406:6:17:1691:707#0 1 1 76 53660 53735 [CCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGA] HWI-EAS406:6:79:633:863#0 1 1 76 53663 53738 [CTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAA] HWI-EAS406:5:34:1333:412#0 1 1 76 53664 53739 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:5:15:969:1042#0 1 1 76 53665 53740 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:7:97:1167:280#0 1 1 76 53665 53740 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:36:518:679#0 1 1 76 53666 53741 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:54:1741:1277#0 1 1 76 53666 53741 [TGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAA] HWI-EAS406:7:81:166:408#0 1 1 76 53668 53743 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:49:1567:1190#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:63:726:607#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:45:510:1638#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:98:1520:1892#0 1 1 76 53670 53745 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:6:32:504:1203#0 1 1 76 53671 53746 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:7:19:498:1997#0 1 1 76 53671 53746 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:61:1174:249#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:76:612:158#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:7:4:1433:1399#0 1 1 76 53672 53747 [CCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAG] HWI-EAS406:7:80:183:999#0 1 1 76 53673 53748 [CAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGT] HWI-EAS406:6:32:1074:1880#0 1 1 76 53674 53749 [AAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTG] HWI-EAS406:5:4:486:796#0 1 1 76 53675 53750 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:5:63:1031:1371#0 1 1 76 53676 53751 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:6:23:1233:1354#0 1 1 76 53676 53751 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:5:24:218:423#0 1 1 76 53677 53752 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:7:78:154:1954#0 1 1 76 53677 53752 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:5:53:918:295#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:6:66:225:1404#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:32:1665:1736#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:62:115:769#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:71:782:789#0 1 1 76 53678 53753 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:5:5:1378:1611#0 1 1 76 53680 53755 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:7:10:256:644#0 1 1 76 53680 53755 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:27:114:140#0 1 1 76 53681 53756 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:65:176:624#0 1 1 76 53681 53756 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:46:949:1239#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:60:668:521#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:64:755:266#0 1 1 76 53682 53757 [ATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAG] HWI-EAS406:6:26:366:1585#0 1 1 76 53683 53758 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:1:1496:199#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:65:902:1012#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:62:339:319#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:91:1443:1906#0 1 1 76 53685 53760 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:5:50:1573:914#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:16:1511:680#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:31:178:391#0 1 1 76 53686 53761 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:5:34:406:871#0 1 1 76 53687 53762 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:6:79:753:185#0 1 1 76 53687 53762 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:5:5:1322:609#0 1 1 76 53688 53763 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:7:64:1248:1852#0 1 1 76 53688 53763 [GGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAA] HWI-EAS406:5:54:375:1950#0 1 1 76 53690 53765 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:5:57:1380:1653#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:56:338:1451#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:91:732:153#0 1 1 76 53692 53767 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:30:214:1194#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:74:1142:986#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:38:1357:1075#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:44:1020:1099#0 1 1 76 53693 53768 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:52:251:1614#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:86:1056:870#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:7:66:619:1649#0 1 1 76 53694 53769 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:72:758:676#0 1 1 76 53695 53770 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:74:752:1474#0 1 1 76 53695 53770 [TTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCA] HWI-EAS406:6:22:502:1518#0 1 1 76 53696 53771 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:31:1307:1856#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1567:1793#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1568:1795#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:7:44:828:1712#0 1 1 76 53697 53772 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:6:43:697:1975#0 1 1 76 53698 53773 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:7:37:1626:1745#0 1 1 76 53698 53773 [AAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCA] HWI-EAS406:6:70:1399:930#0 1 1 76 53699 53774 [AGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCAT] HWI-EAS406:5:62:689:1420#0 1 1 76 53700 53775 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:22:290:747#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:62:1222:999#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:34:460:1182#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:60:1445:1659#0 1 1 76 53702 53777 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:5:23:816:1245#0 1 1 76 53703 53778 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:7:98:652:1996#0 1 1 76 53703 53778 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:6:36:567:1926#0 1 1 76 53704 53779 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:7:75:667:566#0 1 1 76 53704 53779 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:21:1467:217#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:46:494:1335#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:6:44:574:183#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:7:85:784:1509#0 1 1 76 53705 53780 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:45:1699:1798#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:61:259:848#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:7:82:1487:989#0 1 1 76 53707 53782 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:44:799:1472#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:96:1345:1148#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:2:556:1588#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:40:1121:575#0 1 1 76 53708 53783 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:5:80:187:1669#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:6:42:995:1699#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:7:1:1151:1039#0 1 1 76 53709 53784 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:6:20:1380:749#0 1 1 76 53710 53785 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:7:68:1531:2000#0 1 1 76 53710 53785 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:6:172:756#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:83:1402:1552#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:97:211:1856#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:7:34:732:1499#0 1 1 76 53711 53786 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:31:1051:1941#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:72:16:734#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:6:18:1773:1683#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:7:62:201:660#0 1 1 76 53712 53787 [AGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATG] HWI-EAS406:6:38:1593:715#0 1 1 76 53713 53788 [GAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGT] HWI-EAS406:7:82:498:1137#0 1 1 76 53714 53789 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:6:16:786:304#0 1 1 76 53715 53790 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:7:62:987:306#0 1 1 76 53715 53790 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:6:39:548:1099#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:1:1505:1228#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:96:854:764#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:98:1214:1724#0 1 1 76 53716 53791 [AAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGA] HWI-EAS406:7:51:262:874#0 1 1 76 53717 53792 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:4:1419:1401#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:76:1374:135#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:6:56:234:1355#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:7:99:1407:1195#0 1 1 76 53718 53793 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:5:63:1022:1714#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:22:1111:1486#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:23:1173:1393#0 1 1 76 53721 53796 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:8:1504:449#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:23:1015:1090#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:80:295:924#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:86:1016:1150#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:18:286:633#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:52:551:770#0 1 1 76 53722 53797 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:5:92:222:1504#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:41:1220:1625#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:64:1773:1523#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:41:178:512#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:57:1245:950#0 1 1 76 53723 53798 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:13:1239:1827#0 1 1 76 53724 53799 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:50:1129:1025#0 1 1 76 53724 53799 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:58:544:1826#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:76:1770:835#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:2:1239:530#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:49:1558:1668#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:76:1322:2034#0 1 1 76 53726 53801 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:13:1139:793#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:25:1401:279#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:43:611:94#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:59:320:1125#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:36:1288:532#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:57:120:1826#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:93:937:626#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:7:34:854:831#0 1 1 76 53727 53802 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:5:24:350:1606#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:6:29:1254:1093#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:34:439:850#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:66:98:814#0 1 1 76 53728 53803 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:5:23:48:2016#0 1 1 76 53729 53804 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:6:87:506:1983#0 1 1 76 53729 53804 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:41:1175:1092#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:79:488:597#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:6:47:1352:1849#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:32:287:1824#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:46:103:1917#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:75:1152:938#0 1 1 76 53730 53805 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:26:1440:278#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:28:373:1728#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:69:96:355#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:6:23:600:781#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:7:32:1118:1144#0 1 1 76 53731 53806 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:1:841:1431#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:37:1200:270#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:68:506:1220#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:25:945:552#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:61:1483:374#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:65:1250:212#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:94:1427:1380#0 1 1 76 53732 53807 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:5:25:264:1466#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:6:84:595:1097#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:7:57:1363:1464#0 1 1 76 53733 53808 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:17:785:1676#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:79:760:1454#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:85:1239:1869#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:65:31:1244#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:99:858:1834#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:7:87:1110:181#0 1 1 76 53734 53809 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:5:39:824:753#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:6:95:1374:274#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:7:98:1702:780#0 1 1 76 53735 53810 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:5:8:1037:1569#0 1 1 76 53736 53811 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:6:46:1413:1388#0 1 1 76 53736 53811 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:23:1734:1243#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:41:1134:841#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:97:878:1045#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:6:52:408:1247#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:7:24:891:1738#0 1 1 76 53737 53812 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:5:72:815:1360#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:6:2:1349:1131#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:7:100:1432:1673#0 1 1 76 53738 53813 [AGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCT] HWI-EAS406:7:99:663:941#0 1 1 76 53739 53814 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:33:969:1266#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:56:1399:1209#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:1:570:1171#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:20:538:1974#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:36:1481:568#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:70:460:922#0 1 1 76 53741 53816 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:5:53:674:1771#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:41:1313:937#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:63:250:1453#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:3:584:2021#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:56:1367:1533#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:72:1445:1348#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:76:1312:1734#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:95:1543:1168#0 1 1 76 53742 53817 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:60:1107:1118#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:64:81:1379#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:68:1426:356#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:7:42:569:1573#0 1 1 76 53743 53818 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:5:53:1583:925#0 1 1 76 53744 53819 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:6:53:1027:1510#0 1 1 76 53744 53819 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:5:72:1317:148#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:6:261:208#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:43:1038:1753#0 1 1 76 53745 53820 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:27:600:1166#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:75:1673:1588#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:6:32:1188:1603#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:7:28:1234:1172#0 1 1 76 53746 53821 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:28:294:470#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:32:1732:1461#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:67:1690:1587#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:98:1438:220#0 1 1 76 53747 53822 [GTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGT] HWI-EAS406:6:81:1704:1251#0 1 1 76 53748 53823 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:5:66:939:722#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:5:940:714#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:74:245:845#0 1 1 76 53749 53824 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:16:1751:1337#0 1 1 76 53750 53825 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:92:1250:1878#0 1 1 76 53750 53825 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:5:7:150:937#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:6:45:698:675#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:56:106:152#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:92:53:1655#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:93:900:1917#0 1 1 76 53751 53826 [AGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTA] HWI-EAS406:7:82:1176:398#0 1 1 76 53752 53827 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:7:230:370#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:63:1577:1760#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:61:1184:1226#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:85:690:1531#0 1 1 76 53753 53828 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:27:956:983#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:45:963:1325#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:6:35:380:1287#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:7:54:1221:1597#0 1 1 76 53754 53829 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:5:58:1337:1843#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:45:1177:1809#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:100:568:843#0 1 1 76 53755 53830 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:31:349:1472#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:87:1211:787#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:13:777:1410#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:50:1751:1006#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:64:1425:835#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:73:1117:1512#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:79:473:1944#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:92:617:442#0 1 1 76 53756 53831 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:5:55:535:693#0 1 1 76 53757 53832 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:6:12:1010:1013#0 1 1 76 53757 53832 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:5:41:1064:662#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:36:964:919#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:75:617:687#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:7:80:1003:1446#0 1 1 76 53758 53833 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:5:82:56:1669#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:6:68:1701:1310#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:11:1314:1766#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:41:1106:2023#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:86:97:1248#0 1 1 76 53759 53834 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:8:590:1396#0 1 1 76 53760 53835 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:57:494:1164#0 1 1 76 53760 53835 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:5:57:1162:1145#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:37:1396:1876#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:65:362:1148#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:73:759:1170#0 1 1 76 53762 53837 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:63:1627:1085#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:67:81:493#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:7:76:1055:1562#0 1 1 76 53763 53838 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:5:75:1787:1708#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:30:698:510#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:32:1554:1024#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:74:1226:1465#0 1 1 76 53764 53839 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:7:784:1208#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:9:1546:1495#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:50:1176:969#0 1 1 76 53765 53840 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:1:1384:988#0 1 1 76 53766 53841 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:20:1449:626#0 1 1 76 53766 53841 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:65:1660:1360#0 1 1 76 53767 53842 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:90:1094:640#0 1 1 76 53767 53842 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:5:64:410:1688#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:6:26:1655:589#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:7:15:249:260#0 1 1 76 53768 53843 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:5:62:793:1138#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:52:1345:1732#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:66:886:2012#0 1 1 76 53769 53844 [CATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAG] HWI-EAS406:5:29:1101:1077#0 1 1 76 53770 53845 [ATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGA] HWI-EAS406:7:33:1565:1058#0 1 1 76 53771 53846 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:2:1040:467#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:36:215:9#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:7:28:569:749#0 1 1 76 53772 53847 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:5:18:973:721#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:11:509:961#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:14:970:1656#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:7:82:1505:741#0 1 1 76 53774 53849 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:6:57:73:1057#0 1 1 76 53775 53850 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:7:36:1184:1732#0 1 1 76 53775 53850 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:25:1080:188#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:64:1369:1981#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:69:479:1105#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:6:54:572:549#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1231:1579#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1232:1581#0 1 1 76 53776 53851 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:57:1570:888#0 1 1 76 53777 53852 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:74:854:1005#0 1 1 76 53777 53852 [ATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGG] HWI-EAS406:7:34:1270:343#0 1 1 76 53778 53853 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:6:56:668:1304#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:7:856:1930#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:45:888:1476#0 1 1 76 53780 53855 [CTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCAT] HWI-EAS406:6:42:851:734#0 1 1 76 53781 53856 [TTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATG] HWI-EAS406:5:3:257:2029#0 1 1 76 53782 53857 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:5:61:413:819#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:54:1631:1840#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:71:1463:1169#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:60:288:561#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:94:426:1935#0 1 1 76 53784 53859 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:5:19:1741:929#0 1 1 76 53785 53860 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:6:38:416:1575#0 1 1 76 53785 53860 [ATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGA] HWI-EAS406:6:53:405:1635#0 1 1 76 53786 53861 [TGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGAT] HWI-EAS406:5:22:210:1199#0 1 1 76 53787 53862 [GTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATT] HWI-EAS406:6:32:1464:1827#0 1 1 76 53788 53863 [TGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCT] HWI-EAS406:6:42:812:1517#0 1 1 76 53790 53865 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:56:536:422#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:63:1786:1961#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:6:23:416:682#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:7:3:459:561#0 1 1 76 53797 53872 [CAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATG] HWI-EAS406:6:96:1108:351#0 1 1 76 53798 53873 [AATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGA] HWI-EAS406:5:12:1631:691#0 1 1 76 53799 53874 [TACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGT] HWI-EAS406:5:6:1567:1249#0 1 1 76 53801 53876 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:27:1287:974#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:37:1042:502#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:59:719:958#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:66:739:603#0 1 1 76 53803 53878 [AACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCA] HWI-EAS406:7:60:332:120#0 1 1 76 53804 53879 [ACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAA] HWI-EAS406:6:80:1253:591#0 1 1 76 53805 53880 [CAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAAT] HWI-EAS406:5:21:737:693#0 1 1 76 53806 53881 [AATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATG] HWI-EAS406:7:22:637:138#0 1 1 76 53807 53882 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:6:63:1509:846#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:2:1085:1217#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:57:1366:484#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:72:146:631#0 1 1 76 53808 53883 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:5:84:1120:1798#0 1 1 76 53809 53884 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:7:100:1230:665#0 1 1 76 53809 53884 [TTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCA] HWI-EAS406:5:44:828:1385#0 1 1 76 53810 53885 [TCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCAT] HWI-EAS406:6:30:371:1827#0 1 1 76 53811 53886 [CCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATC] HWI-EAS406:6:22:246:261#0 1 1 76 53812 53887 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:62:214:1434#0 1 1 76 53814 53889 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:99:593:171#0 1 1 76 53814 53889 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:5:43:1427:1753#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:6:15:1088:326#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:16:616:1762#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:22:193:2002#0 1 1 76 53815 53890 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:5:19:257:841#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:6:22:840:86#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:7:46:1792:706#0 1 1 76 53816 53891 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:6:29:1368:1637#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:54:1378:1220#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:72:1195:1707#0 1 1 76 53817 53892 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:6:29:705:301#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:51:1007:1854#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:71:1350:990#0 1 1 76 53818 53893 [GATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGA] HWI-EAS406:5:24:253:1153#0 1 1 76 53819 53894 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:23:1411:1888#0 1 1 76 53820 53895 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:64:723:1674#0 1 1 76 53820 53895 [TGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGG] HWI-EAS406:7:2:673:1691#0 1 1 76 53821 53896 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:5:76:1155:837#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:6:94:469:788#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:37:643:1364#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:53:289:1408#0 1 1 76 53822 53897 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:6:45:1044:1420#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:40:710:746#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:100:490:1435#0 1 1 76 53824 53899 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:5:13:1725:407#0 1 1 76 53825 53900 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:7:52:149:487#0 1 1 76 53825 53900 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:5:60:1672:59#0 1 1 76 53826 53901 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:6:63:145:1161#0 1 1 76 53826 53901 [AGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGAT] HWI-EAS406:6:18:478:238#0 1 1 76 53827 53902 [GCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATG] HWI-EAS406:5:21:470:772#0 1 1 76 53828 53903 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:45:1121:616#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:62:1614:199#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:92:645:1588#0 1 1 76 53829 53904 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:31:952:221#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:63:1577:1631#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:68:1329:1923#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:100:546:1586#0 1 1 76 53831 53906 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:43:1089:1589#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:99:778:1477#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:6:22:247:1686#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:7:71:167:549#0 1 1 76 53832 53907 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:5:14:1082:1432#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:6:8:1319:401#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:7:61:615:223#0 1 1 76 53833 53908 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:5:15:1128:400#0 1 1 76 53834 53909 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:6:64:715:621#0 1 1 76 53834 53909 [AGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGA] HWI-EAS406:7:3:437:1420#0 1 1 76 53835 53910 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:5:95:712:892#0 1 1 76 53836 53911 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:7:99:1012:428#0 1 1 76 53836 53911 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:6:79:160:1028#0 1 1 76 53837 53912 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:7:65:502:1307#0 1 1 76 53837 53912 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:5:23:87:1049#0 1 1 76 53838 53913 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:7:27:559:906#0 1 1 76 53838 53913 [GAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAA] HWI-EAS406:5:44:1725:701#0 1 1 76 53839 53914 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:6:26:652:624#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:23:313:1514#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:28:269:575#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:42:1472:1659#0 1 1 76 53840 53915 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:5:61:1585:978#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:27:843:932#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:38:823:1504#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:7:67:242:1611#0 1 1 76 53841 53916 [GGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTA] HWI-EAS406:6:100:484:1453#0 1 1 76 53842 53917 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:21:1256:322#0 1 1 76 53843 53918 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:42:1590:1503#0 1 1 76 53843 53918 [AGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGA] HWI-EAS406:6:15:1098:1313#0 1 1 76 53844 53919 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:19:167:915#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:28:962:855#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:10:402:1387#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:22:507:446#0 1 1 76 53846 53921 [TGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGA] HWI-EAS406:7:79:69:1069#0 1 1 76 53847 53922 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:17:476:1819#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:59:1763:1643#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:99:1068:1770#0 1 1 76 53848 53923 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:6:42:1573:1130#0 1 1 76 53849 53924 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:7:60:983:768#0 1 1 76 53849 53924 [AGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCA] HWI-EAS406:6:90:733:843#0 1 1 76 53851 53926 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:5:13:1589:766#0 1 1 76 53852 53927 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:6:88:744:2026#0 1 1 76 53852 53927 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:6:72:914:1448#0 1 1 76 53853 53928 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:7:32:122:1425#0 1 1 76 53853 53928 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:6:30:639:1010#0 1 1 76 53854 53929 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:7:85:958:1700#0 1 1 76 53854 53929 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:5:98:1773:1289#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:27:634:898#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:96:546:1947#0 1 1 76 53856 53931 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:5:88:652:1575#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:6:37:1580:1320#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:7:51:1088:1628#0 1 1 76 53861 53936 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:44:265:1232#0 1 1 76 53862 53937 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:62:909:1646#0 1 1 76 53862 53937 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:6:69:851:1815#0 1 1 76 53863 53938 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:7:20:1140:1641#0 1 1 76 53863 53938 [CTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACAC] HWI-EAS406:5:59:925:1704#0 1 1 76 53864 53939 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:5:18:1269:245#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:6:64:121:1069#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:7:91:277:970#0 1 1 76 53865 53940 [TACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTA] HWI-EAS406:5:47:714:1498#0 1 1 76 53866 53941 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:5:13:1230:1478#0 1 1 76 53868 53943 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:6:19:771:764#0 1 1 76 53868 53943 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:52:138:1695#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:66:1153:1644#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:34:85:723#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:39:45:1058#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:43:1182:1989#0 1 1 76 53869 53944 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:6:57:137:1673#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:28:1513:1071#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:45:837:1484#0 1 1 76 53870 53945 [TGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGT] HWI-EAS406:7:94:1160:1729#0 1 1 76 53872 53947 [GAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTG] HWI-EAS406:6:99:704:55#0 1 1 76 53873 53948 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:6:1448:1278#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:10:451:1596#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:6:5:671:1670#0 1 1 76 53875 53950 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:6:6:1434:396#0 1 1 76 53876 53951 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:7:29:875:1895#0 1 1 76 53876 53951 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:11:1540:1268#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:57:413:1041#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:6:74:1277:1557#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:7:53:362:1259#0 1 1 76 53877 53952 [CAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTT] HWI-EAS406:5:72:857:1226#0 1 1 76 53878 53953 [AATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTG] HWI-EAS406:5:60:340:831#0 1 1 76 53879 53954 [ATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGG] HWI-EAS406:7:90:1254:1384#0 1 1 76 53880 53955 [TGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGA] HWI-EAS406:6:77:527:1198#0 1 1 76 53881 53956 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:6:80:854:939#0 1 1 76 53882 53957 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:7:60:1164:1144#0 1 1 76 53882 53957 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:25:1359:1399#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:76:172:769#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:96:618:1648#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:7:59:1626:278#0 1 1 76 53883 53958 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:44:1270:2024#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:77:476:271#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:7:96:1622:1184#0 1 1 76 53884 53959 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:5:82:1188:1438#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:6:34:347:355#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:70:1117:1195#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:75:1591:977#0 1 1 76 53885 53960 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:45:1223:507#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:67:287:642#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:6:53:1626:1349#0 1 1 76 53886 53961 [ATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGG] HWI-EAS406:7:40:286:1590#0 1 1 76 53888 53963 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:5:6:780:1095#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:6:60:1547:993#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:7:31:1086:1440#0 1 1 76 53889 53964 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:5:1:642:862#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:76:80:1186#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:99:491:978#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:7:60:791:701#0 1 1 76 53890 53965 [CAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTAT] HWI-EAS406:7:74:1435:300#0 1 1 76 53891 53966 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:38:821:581#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:79:1780:301#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:7:44:716:1690#0 1 1 76 53892 53967 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:5:91:190:349#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:6:25:917:360#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:7:39:1580:1695#0 1 1 76 53894 53969 [GGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA] HWI-EAS406:6:35:956:908#0 1 1 76 53895 53970 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:5:32:575:1795#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:6:32:600:1560#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:7:34:778:1836#0 1 1 76 53896 53971 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:29:896:170#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:37:639:1793#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:54:1271:294#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:57:1360:735#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:6:72:220:632#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:7:22:1124:121#0 1 1 76 53898 53973 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:5:33:1187:1504#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:62:514:1656#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:86:788:1355#0 1 1 76 53899 53974 [ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAG] HWI-EAS406:5:54:783:1748#0 1 1 76 53901 53976 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:21:317:1316#0 1 1 76 53902 53977 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:80:825:174#0 1 1 76 53902 53977 [GTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTC] HWI-EAS406:7:63:1279:329#0 1 1 76 53903 53978 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:5:80:1428:269#0 1 1 76 53904 53979 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:6:65:1244:1471#0 1 1 76 53904 53979 [TCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTC] HWI-EAS406:6:53:192:736#0 1 1 76 53905 53980 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:5:92:49:1461#0 1 1 76 53906 53981 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:7:54:281:668#0 1 1 76 53906 53981 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:17:1119:477#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:19:1478:1281#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:6:60:634:1666#0 1 1 76 53907 53982 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:14:1203:1035#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1420:1500#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1422:1501#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:6:25:1163:723#0 1 1 76 53908 53983 [GAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCG] HWI-EAS406:6:98:883:1692#0 1 1 76 53909 53984 [AGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGA] HWI-EAS406:7:49:630:1898#0 1 1 76 53910 53985 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:40:1573:1541#0 1 1 76 53911 53986 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:72:730:185#0 1 1 76 53911 53986 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:41:749:946#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:81:1134:1986#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:91:1360:1610#0 1 1 76 53912 53987 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:5:44:1317:939#0 1 1 76 53913 53988 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:6:12:98:266#0 1 1 76 53913 53988 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:5:19:421:380#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:70:1220:1053#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:98:834:906#0 1 1 76 53915 53990 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:5:93:115:709#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:26:728:691#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:61:455:1037#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:79:179:1965#0 1 1 76 53916 53991 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:8:727:453#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:64:879:634#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:80:1491:1809#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:7:52:178:742#0 1 1 76 53917 53992 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:5:41:1062:1929#0 1 1 76 53918 53993 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:6:31:1747:623#0 1 1 76 53918 53993 [AGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGC] HWI-EAS406:6:78:186:1663#0 1 1 76 53919 53994 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:20:440:744#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:57:1309:1980#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:58:664:1615#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:6:78:993:297#0 1 1 76 53920 53995 [GATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTA] HWI-EAS406:6:60:1220:1711#0 1 1 76 53921 53996 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:47:519:669#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:71:834:558#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:6:42:1752:501#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:7:92:1198:1990#0 1 1 76 53922 53997 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:5:71:1586:762#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:6:98:77:1185#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:56:381:873#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:84:723:1477#0 1 1 76 53923 53998 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:37:263:1790#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:42:132:1471#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:6:73:141:1610#0 1 1 76 53924 53999 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:88:569:1377#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:97:586:928#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:14:564:751#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:98:1335:438#0 1 1 76 53925 54000 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:5:72:1090:782#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:6:42:1711:392#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:3:1582:445#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:34:922:852#0 1 1 76 53926 54001 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:6:11:1488:353#0 1 1 76 53927 54002 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:7:68:172:914#0 1 1 76 53927 54002 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:5:38:475:1202#0 1 1 76 53928 54003 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:7:97:572:717#0 1 1 76 53928 54003 [AAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGC] HWI-EAS406:5:72:1652:1326#0 1 1 76 53929 54004 [GCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTT] HWI-EAS406:6:86:744:1804#0 1 1 76 53931 54006 [CTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTG] HWI-EAS406:7:92:1168:291#0 1 1 76 53932 54007 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:6:89:754:1507#0 1 1 76 53933 54008 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:7:48:639:610#0 1 1 76 53933 54008 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:25:1067:1627#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:82:372:919#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:6:27:428:893#0 1 1 76 53934 54009 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:6:1055:1189#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:94:235:1499#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:13:128:1692#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:99:198:1261#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:7:35:1019:1849#0 1 1 76 53935 54010 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:5:96:75:1459#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:12:613:2015#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:50:1410:1118#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:56:167:925#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:91:1633:1695#0 1 1 76 53936 54011 [CACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCC] HWI-EAS406:6:20:1297:1560#0 1 1 76 53937 54012 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:47:1430:499#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:67:90:1899#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:52:1183:1187#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:57:146:1555#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:83:588:330#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:7:17:987:818#0 1 1 76 53938 54013 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:6:70:588:639#0 1 1 76 53939 54014 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:7:33:1112:1882#0 1 1 76 53939 54014 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:11:833:1953#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:61:976:940#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:89:403:309#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:44:1423:985#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:62:1723:212#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:65:390:1548#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:83:1477:427#0 1 1 76 53940 54015 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:6:6:58:608#0 1 1 76 53941 54016 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:7:50:641:1459#0 1 1 76 53941 54016 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:6:82:542:1980#0 1 1 76 53942 54017 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:7:34:1283:493#0 1 1 76 53942 54017 [CTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTC] HWI-EAS406:5:81:225:724#0 1 1 76 53943 54018 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:3:717:1798#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:31:921:1750#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:42:150:711#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:4:434:33#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:56:416:1068#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:99:54:1548#0 1 1 76 53944 54019 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:19:1381:347#0 1 1 76 53945 54020 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:51:1338:736#0 1 1 76 53945 54020 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:5:75:621:276#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:10:1296:1244#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:71:1579:888#0 1 1 76 53946 54021 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:23:812:1012#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:78:102:1558#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:87:525:1809#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:31:471:759#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:79:1344:2004#0 1 1 76 53948 54023 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:5:49:98:2023#0 1 1 76 53949 54024 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:6:59:1152:522#0 1 1 76 53949 54024 [TCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCA] HWI-EAS406:7:49:1313:762#0 1 1 76 53950 54025 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:6:54:1459:1963#0 1 1 76 53952 54027 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:7:11:1488:1455#0 1 1 76 53952 54027 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:6:36:677:155#0 1 1 76 53953 54028 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:7:38:394:837#0 1 1 76 53953 54028 [GGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGA] HWI-EAS406:5:59:1281:1521#0 1 1 76 53954 54029 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:5:53:897:165#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:30:553:918#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:54:1063:1707#0 1 1 76 53955 54030 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:5:83:390:1898#0 1 1 76 53956 54031 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:6:35:1663:440#0 1 1 76 53956 54031 [CTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCT] HWI-EAS406:5:77:61:1345#0 1 1 76 53958 54033 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:52:441:826#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:55:1378:1320#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:91:648:2026#0 1 1 76 53959 54034 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:44:1324:176#0 1 1 76 53960 54035 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:81:477:1340#0 1 1 76 53960 54035 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:43:553:1574#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:45:822:373#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:6:29:1105:782#0 1 1 76 53961 54036 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:40:723:1752#0 1 1 76 53963 54038 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:45:744:896#0 1 1 76 53963 54038 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:5:37:380:576#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:38:682:1903#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:83:1387:772#0 1 1 76 53965 54040 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:5:43:562:1255#0 1 1 76 53966 54041 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:7:93:809:856#0 1 1 76 53966 54041 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:5:29:1156:1834#0 1 1 76 53967 54042 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:7:41:697:849#0 1 1 76 53967 54042 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:5:83:778:1358#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:20:906:418#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:50:1396:1687#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:7:75:936:1547#0 1 1 76 53968 54043 [GAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTC] HWI-EAS406:6:89:161:1255#0 1 1 76 53969 54044 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:5:57:482:1642#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:41:1677:1966#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:74:117:759#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:75:432:1382#0 1 1 76 53970 54045 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:5:26:291:1912#0 1 1 76 53971 54046 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:7:32:1615:1525#0 1 1 76 53971 54046 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:40:1352:1869#0 1 1 76 53972 54047 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:70:809:1723#0 1 1 76 53972 54047 [AAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTA] HWI-EAS406:5:3:949:714#0 1 1 76 53973 54048 [AGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACA] HWI-EAS406:7:9:312:19#0 1 1 76 53975 54050 [GTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAA] HWI-EAS406:6:9:1731:1120#0 1 1 76 53976 54051 [TCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAG] HWI-EAS406:6:1:547:479#0 1 1 76 53977 54052 [TCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAA] HWI-EAS406:7:99:61:1603#0 1 1 76 53979 54054 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:6:60:1243:1365#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:4:121:689#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:93:1081:97#0 1 1 76 53980 54055 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:5:26:1615:1713#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:41:1043:1255#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:72:103:1770#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:7:99:1349:604#0 1 1 76 53981 54056 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:6:97:767:1015#0 1 1 76 53982 54057 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:7:53:77:1051#0 1 1 76 53982 54057 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:5:62:1300:1371#0 1 1 76 53983 54058 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:6:55:1719:1387#0 1 1 76 53983 54058 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:5:5:288:1125#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:6:39:962:1973#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:7:54:273:2027#0 1 1 76 53984 54059 [TTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGA] HWI-EAS406:7:100:1344:902#0 1 1 76 53986 54061 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:14:663:1252#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:50:1119:948#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:6:51:1647:1653#0 1 1 76 53987 54062 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:6:38:1233:1247#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:51:1241:662#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:76:446:1078#0 1 1 76 53989 54064 [GGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCT] HWI-EAS406:7:79:1686:963#0 1 1 76 53990 54065 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:49:1457:1100#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:68:171:1825#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:67:1555:2010#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:78:1460:1502#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:7:7:751:1141#0 1 1 76 53991 54066 [AGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCT] HWI-EAS406:5:75:1183:269#0 1 1 76 53992 54067 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:17:1630:1064#0 1 1 76 53993 54068 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:93:671:1034#0 1 1 76 53993 54068 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:6:43:1683:1051#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:62:1392:285#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:65:472:1193#0 1 1 76 53994 54069 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:30:1353:1081#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:68:299:782#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:6:58:300:1064#0 1 1 76 53995 54070 [AGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGG] HWI-EAS406:5:4:156:941#0 1 1 76 53996 54071 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:32:267:147#0 1 1 76 53997 54072 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:38:1541:1446#0 1 1 76 53997 54072 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:5:20:720:1400#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:6:35:677:1778#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:7:90:983:632#0 1 1 76 53998 54073 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:5:63:928:1410#0 1 1 76 54000 54075 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:6:10:305:1638#0 1 1 76 54000 54075 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:55:859:984#0 1 1 76 54002 54077 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:94:749:1858#0 1 1 76 54002 54077 [GCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGC] HWI-EAS406:5:37:1539:1116#0 1 1 76 54003 54078 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:16:1287:1466#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:48:1089:706#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:54:177:1301#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:6:38:1374:1426#0 1 1 76 54005 54080 [TGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGA] HWI-EAS406:7:6:1282:521#0 1 1 76 54006 54081 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:6:2:433:1863#0 1 1 76 54007 54082 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:7:7:1105:730#0 1 1 76 54007 54082 [ATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATC] HWI-EAS406:6:70:480:304#0 1 1 76 54008 54083 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:38:94:1030#0 1 1 76 54009 54084 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:65:1234:1621#0 1 1 76 54009 54084 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:5:28:1247:1588#0 1 1 76 54010 54085 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:6:53:1468:1857#0 1 1 76 54010 54085 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:31:1752:791#0 1 1 76 54011 54086 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:41:1143:1859#0 1 1 76 54011 54086 [CTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTC] HWI-EAS406:6:35:1486:1808#0 1 1 76 54012 54087 [TTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCA] HWI-EAS406:5:37:281:275#0 1 1 76 54013 54088 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:35:1411:1805#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:75:1704:1134#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:6:79:577:1487#0 1 1 76 54014 54089 [TGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGT] HWI-EAS406:5:46:1694:1456#0 1 1 76 54015 54090 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:6:41:1700:2005#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:47:370:1388#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:68:53:843#0 1 1 76 54016 54091 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:5:25:1521:1357#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:6:69:1289:763#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:7:73:484:1824#0 1 1 76 54018 54093 [TGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAG] HWI-EAS406:5:35:539:902#0 1 1 76 54019 54094 [TTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTA] HWI-EAS406:7:49:1156:238#0 1 1 76 54021 54096 [TGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTAC] HWI-EAS406:5:70:1312:1703#0 1 1 76 54022 54097 [CAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCC] HWI-EAS406:5:30:1054:1157#0 1 1 76 54024 54099 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:5:29:1569:363#0 1 1 76 54025 54100 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:7:54:1658:1211#0 1 1 76 54025 54100 [AAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTG] HWI-EAS406:7:57:459:506#0 1 1 76 54026 54101 [GAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTG] HWI-EAS406:6:65:1675:1051#0 1 1 76 54028 54103 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:5:8:1221:662#0 1 1 76 54029 54104 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:7:59:1524:1978#0 1 1 76 54029 54104 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:60:1591:1383#0 1 1 76 54031 54106 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:61:662:313#0 1 1 76 54031 54106 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:28:1721:526#0 1 1 76 54036 54111 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:79:947:2033#0 1 1 76 54036 54111 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:6:46:1601:1005#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:51:154:262#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:79:1464:344#0 1 1 76 54037 54112 [TCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGA] HWI-EAS406:7:82:855:1925#0 1 1 76 54039 54114 [CACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAG] HWI-EAS406:7:3:1094:1673#0 1 1 76 54040 54115 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:5:12:1619:1515#0 1 1 76 54041 54116 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:6:65:331:1333#0 1 1 76 54041 54116 [CTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGA] HWI-EAS406:5:62:192:1866#0 1 1 76 54042 54117 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:3:1065:1215#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:15:1564:1353#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:7:42:666:1287#0 1 1 76 54044 54119 [AGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCT] HWI-EAS406:6:50:757:1696#0 1 1 76 54045 54120 [GTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTC] HWI-EAS406:6:58:1422:1798#0 1 1 76 54046 54121 [ACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCC] HWI-EAS406:5:65:798:193#0 1 1 76 54048 54123 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:53:603:1620#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:64:1755:1587#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:7:57:866:497#0 1 1 76 54050 54125 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:5:68:897:1716#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:27:1416:776#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:45:1583:1140#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:50:873:1753#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:7:41:62:1152#0 1 1 76 54051 54126 [GAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTG] HWI-EAS406:6:39:1044:1768#0 1 1 76 54052 54127 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:5:8:722:814#0 1 1 76 54053 54128 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:7:42:1413:1613#0 1 1 76 54053 54128 [AGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAA] HWI-EAS406:5:83:1427:841#0 1 1 76 54054 54129 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:6:3:323:1911#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:50:1535:1600#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:77:63:1840#0 1 1 76 54055 54130 [GTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGAT] HWI-EAS406:6:73:792:159#0 1 1 76 54057 54132 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:6:52:215:151#0 1 1 76 54058 54133 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:7:57:1335:1367#0 1 1 76 54058 54133 [AGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTG] HWI-EAS406:7:99:1532:1321#0 1 1 76 54059 54134 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:5:35:447:1409#0 1 1 76 54060 54135 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:6:37:1685:923#0 1 1 76 54060 54135 [ACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGA] HWI-EAS406:5:8:236:766#0 1 1 76 54061 54136 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:5:82:977:1482#0 1 1 76 54062 54137 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:6:95:275:559#0 1 1 76 54062 54137 [TCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAG] HWI-EAS406:7:15:625:809#0 1 1 76 54063 54138 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:8:3:842#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:67:1600:789#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:88:187:646#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:7:81:267:1832#0 1 1 76 54064 54139 [TCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGT] HWI-EAS406:5:38:235:1742#0 1 1 76 54065 54140 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:5:18:662:1105#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:6:3:1177:1854#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:7:9:992:765#0 1 1 76 54066 54141 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:43:854:1097#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:93:203:1181#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:7:30:1236:146#0 1 1 76 54067 54142 [CTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATG] HWI-EAS406:5:41:1430:856#0 1 1 76 54068 54143 [TGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGA] HWI-EAS406:6:8:901:1916#0 1 1 76 54069 54144 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:5:47:597:469#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:6:41:457:1990#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:54:1001:853#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:75:488:1983#0 1 1 76 54070 54145 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:1:872:1748#0 1 1 76 54071 54146 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:99:765:526#0 1 1 76 54071 54146 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:5:80:1244:1040#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:10:1560:773#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:37:846:1253#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:43:1695:1212#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:59:1265:423#0 1 1 76 54072 54147 [GTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATA] HWI-EAS406:5:74:851:1515#0 1 1 76 54073 54148 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:5:23:1249:1277#0 1 1 76 54074 54149 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:7:34:354:425#0 1 1 76 54074 54149 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:5:35:998:808#0 1 1 76 54075 54150 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:7:61:191:1269#0 1 1 76 54075 54150 [CTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTAC] HWI-EAS406:7:35:1265:691#0 1 1 76 54078 54153 [TGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACA] HWI-EAS406:6:67:942:1117#0 1 1 76 54079 54154 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:6:18:201:519#0 1 1 76 54082 54157 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:7:38:1036:1712#0 1 1 76 54082 54157 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:1:971:947#0 1 1 76 54083 54158 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:95:362:782#0 1 1 76 54083 54158 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:5:22:289:559#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:60:698:460#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:71:177:953#0 1 1 76 54084 54159 [TCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTG] HWI-EAS406:6:93:735:163#0 1 1 76 54086 54161 [CAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGT] HWI-EAS406:7:44:31:512#0 1 1 76 54087 54162 [AGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTG] HWI-EAS406:5:14:1556:1112#0 1 1 76 54088 54163 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:7:1377:1427#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:46:104:355#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:6:838:799#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:56:617:1957#0 1 1 76 54089 54164 [GAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTG] HWI-EAS406:5:61:214:1783#0 1 1 76 54091 54166 [AAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGC] HWI-EAS406:5:25:1168:1342#0 1 1 76 54092 54167 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:6:39:953:1361#0 1 1 76 54093 54168 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:7:31:1758:925#0 1 1 76 54093 54168 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:50:1234:1908#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:51:539:1145#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:7:42:988:259#0 1 1 76 54094 54169 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:5:94:1523:1523#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:6:962:858#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:28:1313:471#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:32:713:455#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:60:1645:1371#0 1 1 76 54095 54170 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:5:69:1336:939#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:6:18:1512:1768#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:7:76:96:774#0 1 1 76 54097 54172 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:6:57:1393:1335#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:36:530:50#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:48:1493:1687#0 1 1 76 54098 54173 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:5:6:1630:1633#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:6:65:1117:1477#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:7:48:398:614#0 1 1 76 54099 54174 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:5:959:788#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:49:1299:1294#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:65:760:767#0 1 1 76 54100 54175 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:5:42:1274:983#0 1 1 76 54101 54176 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:7:16:1408:327#0 1 1 76 54101 54176 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:49:1260:1907#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:71:762:262#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:67:1718:913#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:100:1551:1706#0 1 1 76 54102 54177 [GGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGT] HWI-EAS406:7:39:537:2011#0 1 1 76 54103 54178 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:5:70:1264:579#0 1 1 76 54104 54179 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:6:18:742:1162#0 1 1 76 54104 54179 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:5:38:610:654#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:6:5:1427:983#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:6:247:694#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:39:309:1243#0 1 1 76 54105 54180 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:5:36:1023:788#0 1 1 76 54106 54181 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:6:36:722:1541#0 1 1 76 54106 54181 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:54:1390:1329#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:84:296:1881#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:6:49:1063:1067#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:38:235:939#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:815#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:813#0 1 1 76 54107 54182 [TCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGA] HWI-EAS406:7:66:668:514#0 1 1 76 54108 54183 [CTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAG] HWI-EAS406:6:1:1168:1872#0 1 1 76 54109 54184 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:53:1102:724#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:96:530:2016#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:66:42:446#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:73:1393:935#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:90:175:1657#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:7:49:1176:1859#0 1 1 76 54110 54185 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:7:1605:1811#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:25:678:836#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:26:1605:573#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:32:1175:618#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:40:482:270#0 1 1 76 54111 54186 [AGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCT] HWI-EAS406:6:59:668:1088#0 1 1 76 54112 54187 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:5:89:237:262#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:6:82:981:753#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:7:95:125:1460#0 1 1 76 54113 54188 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:35:1057:851#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:94:541:1656#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:6:33:1425:321#0 1 1 76 54116 54191 [ACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGA] HWI-EAS406:6:10:1351:765#0 1 1 76 54117 54192 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:5:5:1510:1678#0 1 1 76 54119 54194 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:7:85:551:1050#0 1 1 76 54119 54194 [CTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATT] HWI-EAS406:7:44:439:848#0 1 1 76 54123 54198 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:37:674:1509#0 1 1 76 54124 54199 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:100:798:1572#0 1 1 76 54124 54199 [GTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGA] HWI-EAS406:7:56:798:1877#0 1 1 76 54125 54200 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:32:285:1614#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:33:1199:395#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:6:9:1257:567#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:7:78:402:1695#0 1 1 76 54126 54201 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:5:73:501:691#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:42:1262:1782#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:62:1716:1116#0 1 1 76 54127 54202 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:47:319:1607#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:79:1415:718#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:7:17:1742:361#0 1 1 76 54128 54203 [AGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCT] HWI-EAS406:5:65:1683:1785#0 1 1 76 54129 54204 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:22:469:211#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:47:1051:822#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:89:645:1253#0 1 1 76 54131 54206 [TTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGG] HWI-EAS406:7:53:1035:1424#0 1 1 76 54132 54207 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:27:1133:755#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:94:227:1579#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:6:42:753:402#0 1 1 76 54134 54209 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:34:1248:1931#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:44:495:2018#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:72:1132:1576#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:7:64:220:1228#0 1 1 76 54135 54210 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:6:8:1387:1563#0 1 1 76 54136 54211 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:7:86:1191:1778#0 1 1 76 54136 54211 [AGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGC] HWI-EAS406:7:78:1540:1877#0 1 1 76 54137 54212 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:5:37:178:213#0 1 1 76 54139 54214 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:6:45:363:213#0 1 1 76 54139 54214 [TATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCAT] HWI-EAS406:5:3:156:1647#0 1 1 76 54140 54215 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:62:779:1177#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:72:936:54#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:79:541:1148#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:6:6:1460:1107#0 1 1 76 54141 54216 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:5:35:29:1868#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:89:1573:1987#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:92:1202:380#0 1 1 76 54142 54217 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:5:66:1651:1834#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:6:1:818:861#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:7:23:1150:620#0 1 1 76 54143 54218 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:9:600:1790#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:40:845:408#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:7:61:441:677#0 1 1 76 54144 54219 [GATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTA] HWI-EAS406:7:25:1391:905#0 1 1 76 54145 54220 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:29:1417:999#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:77:1148:453#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:28:317:1489#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:34:58:451#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:65:1663:1191#0 1 1 76 54146 54221 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:5:52:1161:616#0 1 1 76 54147 54222 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:7:28:336:1807#0 1 1 76 54147 54222 [ACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCT] HWI-EAS406:6:85:243:843#0 1 1 76 54148 54223 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:6:41:295:981#0 1 1 76 54149 54224 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:7:66:140:852#0 1 1 76 54149 54224 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:5:79:393:543#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:18:1350:1820#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:32:1319:1017#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:46:923:1720#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:99:1138:1186#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:17:1267:1397#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:86:387:2021#0 1 1 76 54150 54225 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:16:1065:1213#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:19:675:634#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:46:1591:2004#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:99:1426:1408#0 1 1 76 54151 54226 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:12:881:861#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:929:724#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:1746:503#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:6:71:872:401#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:7:53:948:1175#0 1 1 76 54152 54227 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:56:246:799#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:58:242:1499#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:71:855:1885#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:84:220:1674#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:7:48:1599:1908#0 1 1 76 54154 54229 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:5:21:1642:1137#0 1 1 76 54155 54230 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:6:6:1147:732#0 1 1 76 54155 54230 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:5:66:1128:1376#0 1 1 76 54156 54231 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:6:55:656:391#0 1 1 76 54156 54231 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:20:1104:1681#0 1 1 76 54157 54232 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:84:997:392#0 1 1 76 54157 54232 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:67:700:788#0 1 1 76 54158 54233 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:89:1120:429#0 1 1 76 54158 54233 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:36:1143:227#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:80:711:956#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:36:1396:1577#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:88:584:1502#0 1 1 76 54159 54234 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:11:1516:1033#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:87:1474:820#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:7:31:573:281#0 1 1 76 54161 54236 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:6:26:1456:433#0 1 1 76 54162 54237 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:7:58:1242:1021#0 1 1 76 54162 54237 [GGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATT] HWI-EAS406:6:26:1525:983#0 1 1 76 54163 54238 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:21:1447:171#0 1 1 76 54164 54239 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:53:579:1024#0 1 1 76 54164 54239 [TGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGT] HWI-EAS406:7:30:587:260#0 1 1 76 54165 54240 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:22:1574:1334#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:79:793:103#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:3:757:524#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:37:1589:439#0 1 1 76 54167 54242 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:5:74:1683:444#0 1 1 76 54168 54243 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:7:65:530:1740#0 1 1 76 54168 54243 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:60:700:816#0 1 1 76 54169 54244 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:94:880:1637#0 1 1 76 54169 54244 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:5:40:1586:1236#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1383:228#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1384:231#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:7:27:357:718#0 1 1 76 54171 54246 [ATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGA] HWI-EAS406:5:40:1646:202#0 1 1 76 54173 54248 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:5:56:1143:581#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:31:1016:1570#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:46:593:1405#0 1 1 76 54175 54250 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:24:814:315#0 1 1 76 54176 54251 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:82:967:1960#0 1 1 76 54176 54251 [GAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGG] HWI-EAS406:5:10:1130:1883#0 1 1 76 54179 54254 [GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGC] HWI-EAS406:7:68:216:273#0 1 1 76 54181 54256 [AGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCAC] HWI-EAS406:5:70:157:381#0 1 1 76 54183 54258 [GCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGA] HWI-EAS406:6:3:1482:934#0 1 1 76 54185 54260 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:6:38:723:1684#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:6:122:307#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:47:563:1669#0 1 1 76 54186 54261 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:5:37:398:1887#0 1 1 76 54188 54263 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:6:39:44:975#0 1 1 76 54188 54263 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:5:57:1763:1732#0 1 1 76 54191 54266 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:6:57:337:21#0 1 1 76 54191 54266 [CCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCC] HWI-EAS406:5:72:1722:76#0 1 1 76 54194 54269 [CATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCA] HWI-EAS406:7:75:1542:775#0 1 1 76 54195 54270 [ATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCAT] HWI-EAS406:6:36:950:1807#0 1 1 76 54196 54271 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:55:252:1552#0 1 1 76 54198 54273 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:90:687:1011#0 1 1 76 54198 54273 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:5:22:933:1376#0 1 1 76 54199 54274 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:7:55:464:1339#0 1 1 76 54199 54274 [TTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGG] HWI-EAS406:5:7:1026:1071#0 1 1 76 54201 54276 [TCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGT] HWI-EAS406:5:95:1707:1819#0 1 1 76 54202 54277 [CTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTA] HWI-EAS406:6:7:272:1017#0 1 1 76 54203 54278 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:45:1766:1276#0 1 1 76 54204 54279 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:85:635:917#0 1 1 76 54204 54279 [AGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAA] HWI-EAS406:5:7:770:317#0 1 1 76 54205 54280 [GGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAG] HWI-EAS406:5:69:1660:1657#0 1 1 76 54206 54281 [GAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGA] HWI-EAS406:7:45:1239:1592#0 1 1 76 54207 54282 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:6:76:718:580#0 1 1 76 54210 54285 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:7:60:1450:766#0 1 1 76 54210 54285 [CCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACA] HWI-EAS406:6:38:1154:1262#0 1 1 76 54212 54287 [TCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCT] HWI-EAS406:6:74:673:1824#0 1 1 76 54216 54291 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:5:63:1141:1104#0 1 1 76 54218 54293 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:7:34:280:1626#0 1 1 76 54218 54293 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:5:74:1362:1863#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:6:15:131:937#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:7:2:622:1398#0 1 1 76 54219 54294 [AGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCAC] HWI-EAS406:6:56:333:1558#0 1 1 76 54220 54295 [GCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACT] HWI-EAS406:6:47:1572:1059#0 1 1 76 54221 54296 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:6:57:985:1452#0 1 1 76 54222 54297 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:7:17:1673:794#0 1 1 76 54222 54297 [GGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCA] HWI-EAS406:7:46:726:746#0 1 1 76 54230 54305 [GCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGG] HWI-EAS406:7:52:668:1877#0 1 1 76 54233 54308 [CTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGG] HWI-EAS406:5:68:960:328#0 1 1 76 54234 54309 [TTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAA] HWI-EAS406:5:30:1622:795#0 1 1 76 54237 54312 [TGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAA] HWI-EAS406:6:66:1712:1855#0 1 1 76 54238 54313 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:5:13:1200:595#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:10:747:660#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:97:806:1606#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:7:89:714:1430#0 1 1 76 54239 54314 [TTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAAT] HWI-EAS406:5:7:1135:1327#0 1 1 76 54240 54315 [AATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGA] HWI-EAS406:7:48:1681:1982#0 1 1 76 54242 54317 [AAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAAC] HWI-EAS406:7:37:1176:1255#0 1 1 76 54248 54323 [AGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACC] HWI-EAS406:7:13:1087:1854#0 1 1 76 54249 54324 [CACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTG] HWI-EAS406:7:70:359:1133#0 1 1 76 54256 54331 [ATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCG] HWI-EAS406:5:29:584:531#0 1 1 76 54260 54335 [TGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGG] HWI-EAS406:6:61:844:753#0 1 1 76 54262 54337 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:6:65:1481:1596#0 1 1 76 54263 54338 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:7:37:704:174#0 1 1 76 54263 54338 [ATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCA] HWI-EAS406:5:51:759:1539#0 1 1 76 54264 54339 [CATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCT] HWI-EAS406:5:20:1604:653#0 1 1 76 54269 54344 [TAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATT] HWI-EAS406:5:4:241:642#0 1 1 76 54277 54352 [AGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAA] HWI-EAS406:5:61:1463:1990#0 1 1 76 54280 54355 [GAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAG] HWI-EAS406:7:45:1358:89#0 1 1 76 54283 54358 [CATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATG] HWI-EAS406:6:28:262:1382#0 1 1 76 54286 54361 [ATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGG] HWI-EAS406:5:55:286:1719#0 1 1 76 54287 54362 [CCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGC] HWI-EAS406:6:16:1456:1430#0 1 1 76 54289 54364 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:5:10:1100:437#0 1 1 76 54292 54367 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:6:17:1373:1181#0 1 1 76 54292 54367 [ACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCC] HWI-EAS406:7:81:1055:997#0 1 1 76 54294 54369 [TTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTG] HWI-EAS406:6:43:297:1857#0 1 1 76 54296 54371 [GACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTG] HWI-EAS406:6:62:846:1980#0 1 1 76 54299 54374 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:30:1260:1613#0 1 1 76 54305 54380 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:97:536:1849#0 1 1 76 54305 54380 [AGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCA] HWI-EAS406:7:46:769:555#0 1 1 76 54306 54381 [GGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCAC] HWI-EAS406:7:47:449:1921#0 1 1 76 54307 54382 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:5:36:1008:1949#0 1 1 76 54310 54385 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:6:72:1417:797#0 1 1 76 54310 54385 [AGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGT] HWI-EAS406:5:48:777:1649#0 1 1 76 54317 54392 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:5:78:1126:1855#0 1 1 76 54321 54396 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:6:75:1658:432#0 1 1 76 54321 54396 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:6:90:1610:226#0 1 1 76 54323 54398 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:7:42:1194:1800#0 1 1 76 54323 54398 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:5:38:460:1961#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:6:2:1374:1550#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:7:36:699:705#0 1 1 76 54324 54399 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:6:82:30:684#0 1 1 76 54325 54400 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:7:16:1727:982#0 1 1 76 54325 54400 [ACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTG] HWI-EAS406:7:46:890:1228#0 1 1 76 54326 54401 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:6:28:1135:1646#0 1 1 76 54327 54402 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:7:56:206:264#0 1 1 76 54327 54402 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:5:91:349:1599#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:62:1521:1923#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:77:1438:1455#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:7:41:1061:217#0 1 1 76 54329 54404 [TGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGA] HWI-EAS406:7:62:904:312#0 1 1 76 54330 54405 [GTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGAC] HWI-EAS406:7:68:559:760#0 1 1 76 54331 54406 [CGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGAC] HWI-EAS406:6:23:1308:1435#0 1 1 76 54334 54409 [GGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGA] HWI-EAS406:5:9:436:1783#0 1 1 76 54336 54411 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:6:70:388:1231#0 1 1 76 54339 54414 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:7:37:360:1575#0 1 1 76 54339 54414 [AGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAG] HWI-EAS406:6:41:1079:775#0 1 1 76 54340 54415 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:6:49:1430:1667#0 1 1 76 54345 54420 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:7:22:1583:762#0 1 1 76 54345 54420 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:38:520:1866#0 1 1 76 54346 54421 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:68:1648:592#0 1 1 76 54346 54421 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:6:62:462:1119#0 1 1 76 54347 54422 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:7:43:701:1133#0 1 1 76 54347 54422 [CATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCT] HWI-EAS406:6:20:1777:1193#0 1 1 76 54349 54424 [TTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCC] HWI-EAS406:7:77:1354:1160#0 1 1 76 54351 54426 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:13:1277:628#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:38:619:664#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:53:322:777#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:92:1767:1364#0 1 1 76 54352 54427 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:14:1063:1857#0 1 1 76 54354 54429 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:64:1260:939#0 1 1 76 54354 54429 [AGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCT] HWI-EAS406:7:36:764:2012#0 1 1 76 54355 54430 [AGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTAC] HWI-EAS406:7:34:393:1997#0 1 1 76 54357 54432 [GGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCAT] HWI-EAS406:6:94:1174:764#0 1 1 76 54361 54436 [TGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTA] HWI-EAS406:6:79:1020:780#0 1 1 76 54376 54451 [CGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTT] HWI-EAS406:6:68:1372:846#0 1 1 76 54406 54481 [GAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTTCATT] HWI-EAS406:6:81:1255:688#0 1 1 76 54410 54485 [TACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGA] HWI-EAS406:7:48:1267:1925#0 1 1 76 54460 54535 [CTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGAGA] HWI-EAS406:6:38:817:259#0 1 1 76 54462 54537 [TTCGGTATCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCAT] HWI-EAS406:7:50:111:1321#0 1 1 76 54505 54580 [TCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCT] HWI-EAS406:7:66:316:1516#0 1 1 76 54512 54587 [CTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTG] HWI-EAS406:6:61:1550:424#0 1 1 76 54515 54590 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:5:67:707:682#0 1 1 76 54520 54595 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:6:41:997:1467#0 1 1 76 54520 54595 [ACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTG] HWI-EAS406:7:1:1038:1756#0 1 1 76 54521 54596 [CTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGT] HWI-EAS406:6:35:1389:139#0 1 1 76 54522 54597 [GACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC] HWI-EAS406:7:64:794:1071#0 1 1 76 54525 54600 [CACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGA] HWI-EAS406:6:48:1546:480#0 1 1 76 54530 54605 [ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAG] HWI-EAS406:5:4:440:970#0 1 1 76 54531 54606 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:6:47:966:1183#0 1 1 76 54533 54608 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:7:53:1319:1765#0 1 1 76 54533 54608 [ACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGC] HWI-EAS406:5:14:980:877#0 1 1 76 54537 54612 [TAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCA] HWI-EAS406:6:60:393:902#0 1 1 76 54543 54618 [ACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATA] HWI-EAS406:5:47:861:1612#0 1 1 76 54545 54620 [CAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCT] HWI-EAS406:6:41:1702:1042#0 1 1 76 54548 54623 [TTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTT] HWI-EAS406:6:36:1192:465#0 1 1 76 54552 54627 [TGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGC] HWI-EAS406:7:45:1771:132#0 1 1 76 54554 54629 [GGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATA] HWI-EAS406:6:55:141:877#0 1 1 76 54561 54636 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:6:41:492:1359#0 1 1 76 54566 54641 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:7:48:1004:1533#0 1 1 76 54566 54641 [AAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAA] HWI-EAS406:6:80:857:2034#0 1 1 76 54567 54642 [TTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAA] HWI-EAS406:7:45:1019:801#0 1 1 76 54573 54648 [TATAAAAAAAAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATT] HWI-EAS406:6:67:1105:1297#0 1 1 76 54635 54710 [AAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCAT] HWI-EAS406:6:72:1189:117#0 1 1 76 54644 54719 [AATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGG] HWI-EAS406:6:55:1581:995#0 1 1 76 54648 54723 [TCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAG] HWI-EAS406:5:35:444:949#0 1 1 76 54650 54725 [CAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGC] HWI-EAS406:6:11:10:647#0 1 1 76 54651 54726 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:6:33:396:1612#0 1 1 76 54654 54729 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:7:44:1288:1818#0 1 1 76 54654 54729 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:57:1445:88#0 1 1 76 54657 54732 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:58:390:1937#0 1 1 76 54657 54732 [TTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATT] HWI-EAS406:5:48:129:1825#0 1 1 76 54658 54733 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:39:1252:1264#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:54:537:1509#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:55:1562:1923#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:56:421:1318#0 1 1 76 54659 54734 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:5:38:1272:690#0 1 1 76 54660 54735 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:6:56:983:1532#0 1 1 76 54660 54735 [TTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAA] HWI-EAS406:5:34:904:776#0 1 1 76 54663 54738 [CATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTT] HWI-EAS406:6:58:1366:282#0 1 1 76 54669 54744 [GCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAA] HWI-EAS406:7:41:752:1291#0 1 1 76 54674 54749 [TTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAA] HWI-EAS406:5:56:960:1374#0 1 1 76 54677 54752 [TTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAAC] HWI-EAS406:5:53:1300:974#0 1 1 76 54678 54753 [AGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTA] HWI-EAS406:6:55:367:1351#0 1 1 76 54682 54757 [GGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTAC] HWI-EAS406:5:36:1085:1378#0 1 1 76 54683 54758 [TCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCA] HWI-EAS406:5:59:801:590#0 1 1 76 54689 54764 [AGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTT] HWI-EAS406:6:55:449:1480#0 1 1 76 54692 54767 [GCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGAC] HWI-EAS406:7:99:1141:692#0 1 1 76 54695 54770 [GCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCA] HWI-EAS406:7:99:1266:107#0 1 1 76 54706 54781 [TTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCT] HWI-EAS406:6:52:219:1214#0 1 1 76 54709 54784 [TGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAA] HWI-EAS406:7:59:687:763#0 1 1 76 54715 54790 [GCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAA] HWI-EAS406:6:68:1355:1044#0 1 1 76 54716 54791 [GATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTT] HWI-EAS406:7:61:1525:1492#0 1 1 76 54730 54805 [TGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTG] HWI-EAS406:7:67:1666:1088#0 1 1 76 54739 54814 [GCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGA] HWI-EAS406:6:62:125:463#0 1 1 76 54740 54815 [TAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTC] HWI-EAS406:7:68:455:849#0 1 1 76 54746 54821 [CTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAA] HWI-EAS406:7:35:236:401#0 1 1 76 54755 54830 [TACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAAC] HWI-EAS406:5:5:1165:1267#0 1 1 76 54756 54831 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:73:1129:1305#0 1 1 76 54760 54835 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:77:78:460#0 1 1 76 54760 54835 [GCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTG] HWI-EAS406:6:13:1406:1469#0 1 1 76 54762 54837 [ACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGAT] HWI-EAS406:6:73:543:282#0 1 1 76 54764 54839 [TGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGC] HWI-EAS406:6:41:1338:1133#0 1 1 76 54767 54842 [GACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCT] HWI-EAS406:7:51:911:1053#0 1 1 76 54768 54843 [ACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTG] HWI-EAS406:6:50:547:1645#0 1 1 76 54769 54844 [TTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTC] HWI-EAS406:7:59:1428:643#0 1 1 76 54775 54850 [TTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCA] HWI-EAS406:5:40:180:1943#0 1 1 76 54776 54851 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:51:744:401#0 1 1 76 54777 54852 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:55:619:899#0 1 1 76 54777 54852 [TGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGT] HWI-EAS406:7:37:1026:1049#0 1 1 76 54778 54853 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:43:715:1593#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:58:722:612#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:6:60:710:286#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:7:34:199:796#0 1 1 76 54783 54858 [TCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGA] HWI-EAS406:5:55:1311:280#0 1 1 76 54784 54859 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:49:1088:1272#0 1 1 76 54788 54863 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:61:216:737#0 1 1 76 54788 54863 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:5:48:640:385#0 1 1 76 54791 54866 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:6:33:476:1558#0 1 1 76 54791 54866 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:54:1410:1105#0 1 1 76 54795 54870 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:76:835:1212#0 1 1 76 54795 54870 [GTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACC] HWI-EAS406:6:32:1548:1312#0 1 1 76 54798 54873 [ATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTT] HWI-EAS406:5:2:991:955#0 1 1 76 54800 54875 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:20:116:1761#0 1 1 76 54801 54876 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:33:875:147#0 1 1 76 54801 54876 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:5:70:698:1812#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:6:51:1031:1841#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:41:946:1778#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:58:1532:1630#0 1 1 76 54802 54877 [TTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTT] HWI-EAS406:7:73:1264:585#0 1 1 76 54804 54879 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:6:52:1044:1885#0 1 1 76 54805 54880 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:7:55:1426:887#0 1 1 76 54805 54880 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:5:46:1126:1531#0 1 1 76 54806 54881 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:7:58:493:1365#0 1 1 76 54806 54881 [GAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAA] HWI-EAS406:7:48:1521:589#0 1 1 76 54807 54882 [CCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTG] HWI-EAS406:6:68:305:556#0 1 1 76 54810 54885 [CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGA] HWI-EAS406:6:43:229:1765#0 1 1 76 54811 54886 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:5:42:1688:1220#0 1 1 76 54812 54887 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:7:40:1030:1731#0 1 1 76 54812 54887 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:42:1673:1475#0 1 1 76 54814 54889 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:70:544:1367#0 1 1 76 54814 54889 [AAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAA] HWI-EAS406:7:61:638:1444#0 1 1 76 54816 54891 [AACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAAC] HWI-EAS406:5:50:1059:1293#0 1 1 76 54817 54892 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:33:426:1747#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:58:1637:922#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:63:658:1278#0 1 1 76 54819 54894 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:5:2:610:578#0 1 1 76 54820 54895 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:7:84:157:423#0 1 1 76 54820 54895 [TTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAAT] HWI-EAS406:6:54:209:1630#0 1 1 76 54822 54897 [TCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATG] HWI-EAS406:7:97:963:1565#0 1 1 76 54823 54898 [CCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGC] HWI-EAS406:7:58:798:1339#0 1 1 76 54824 54899 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:6:3:699:1269#0 1 1 76 54828 54903 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:7:45:1362:1785#0 1 1 76 54828 54903 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1019:766#0 1 1 76 54830 54905 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1589:741#0 1 1 76 54830 54905 [CTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGC] HWI-EAS406:6:42:710:1954#0 1 1 76 54831 54906 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:5:54:381:672#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:39:1669:961#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:60:398:1744#0 1 1 76 54832 54907 [TGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTC] HWI-EAS406:5:49:600:1346#0 1 1 76 54833 54908 [GTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCA] HWI-EAS406:5:35:1496:850#0 1 1 76 54834 54909 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:38:1776:564#0 1 1 76 54835 54910 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:62:513:1672#0 1 1 76 54835 54910 [ATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGT] HWI-EAS406:5:60:635:1717#0 1 1 76 54838 54913 [TTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTC] HWI-EAS406:7:62:535:1449#0 1 1 76 54839 54914 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:5:70:739:325#0 1 1 76 54841 54916 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:6:99:1290:751#0 1 1 76 54841 54916 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:5:67:1236:1544#0 1 1 76 54842 54917 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:7:46:1007:418#0 1 1 76 54842 54917 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:5:35:654:1034#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:6:42:1426:1731#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:7:45:1558:1421#0 1 1 76 54843 54918 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:5:59:1538:1310#0 1 1 76 54846 54921 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:7:38:1321:484#0 1 1 76 54846 54921 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:49:1639:559#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:54:1083:293#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:7:41:621:251#0 1 1 76 54847 54922 [CTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTA] HWI-EAS406:5:53:908:1065#0 1 1 76 54848 54923 [TCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTAC] HWI-EAS406:6:52:118:1211#0 1 1 76 54849 54924 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:46:1037:1066#0 1 1 76 54850 54925 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:50:1764:1024#0 1 1 76 54850 54925 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:5:68:808:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:6:44:1702:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:7:39:995:202#0 1 1 76 54852 54927 [TCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAG] HWI-EAS406:7:73:846:1330#0 1 1 76 54853 54928 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:48:916:907#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:53:1292:1430#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:62:427:1685#0 1 1 76 54854 54929 [TTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTC] HWI-EAS406:7:56:426:1445#0 1 1 76 54855 54930 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:5:6:249:575#0 1 1 76 54856 54931 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:6:56:321:1712#0 1 1 76 54856 54931 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:35:1110:1447#0 1 1 76 54857 54932 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:61:618:1165#0 1 1 76 54857 54932 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:54:67:926#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:61:782:1656#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:6:36:1678:1148#0 1 1 76 54858 54933 [AGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGC] HWI-EAS406:6:23:681:145#0 1 1 76 54860 54935 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:5:53:996:669#0 1 1 76 54861 54936 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:6:48:704:823#0 1 1 76 54861 54936 [CCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTA] HWI-EAS406:6:52:340:757#0 1 1 76 54862 54937 [CAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTAT] HWI-EAS406:7:45:1323:2026#0 1 1 76 54863 54938 [AACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATA] HWI-EAS406:5:48:1248:1119#0 1 1 76 54864 54939 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:5:62:1622:1873#0 1 1 76 54865 54940 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:6:53:781:914#0 1 1 76 54865 54940 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:48:899:831#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1880#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1878#0 1 1 76 54867 54942 [ACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACA] HWI-EAS406:7:55:1111:1721#0 1 1 76 54868 54943 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:56:720:921#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:58:723:506#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:61:919:391#0 1 1 76 54870 54945 [CCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTG] HWI-EAS406:7:45:1333:485#0 1 1 76 54872 54947 [TTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAG] HWI-EAS406:7:47:1544:994#0 1 1 76 54874 54949 [ATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTT] HWI-EAS406:7:56:917:951#0 1 1 76 54876 54951 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:55:825:800#0 1 1 76 54877 54952 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:79:1069:1840#0 1 1 76 54877 54952 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:7:1637:1135#0 1 1 76 54879 54954 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:59:560:1386#0 1 1 76 54879 54954 [AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCAC] HWI-EAS406:5:47:1016:800#0 1 1 76 54881 54956 [ACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACA] HWI-EAS406:6:63:194:819#0 1 1 76 54882 54957 [GAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCT] HWI-EAS406:7:68:201:723#0 1 1 76 54885 54960 [AACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTT] HWI-EAS406:5:53:654:1096#0 1 1 76 54886 54961 [CTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATAC] HWI-EAS406:7:48:1114:1725#0 1 1 76 54892 54967 [TAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCA] HWI-EAS406:5:51:821:485#0 1 1 76 54894 54969 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:6:52:643:1405#0 1 1 76 54898 54973 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:7:53:919:1910#0 1 1 76 54898 54973 [CTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTT] HWI-EAS406:5:62:1517:1950#0 1 1 76 54899 54974 [TCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTT] HWI-EAS406:7:73:1005:1586#0 1 1 76 54901 54976 [CTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGAC] HWI-EAS406:5:43:445:1826#0 1 1 76 54906 54981 [AGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACT] HWI-EAS406:7:48:378:827#0 1 1 76 54927 55002 [GCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAA] HWI-EAS406:7:62:475:1726#0 1 1 76 54934 55009 [CCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGAT] HWI-EAS406:6:44:1278:1465#0 1 1 76 54967 55042 [CTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTG] HWI-EAS406:5:53:476:1464#0 1 1 76 54972 55047 [TTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAG] HWI-EAS406:7:57:1087:444#0 1 1 76 54974 55049 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:5:48:1286:1898#0 1 1 76 54985 55060 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:7:57:598:842#0 1 1 76 54985 55060 [AGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTAC] HWI-EAS406:7:47:1400:1764#0 1 1 76 54995 55070 [TTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAG] HWI-EAS406:5:48:1077:629#0 1 1 76 55014 55089 [CTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGG] HWI-EAS406:5:25:1199:349#0 1 1 76 55020 55095 [TTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGA] HWI-EAS406:5:59:447:1541#0 1 1 76 55022 55097 [TTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGAACGACAAT] HWI-EAS406:7:40:178:165#0 1 1 76 55030 55105 [CTCTATTGTCTAGCTATAGGTGGGGGTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGAC] HWI-EAS406:6:46:1242:756#0 1 1 76 55136 55211 [GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTT] HWI-EAS406:5:96:257:741#0 1 1 76 55161 55236 [GGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTG] HWI-EAS406:6:54:667:1882#0 1 1 76 55198 55273 [TTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCA] HWI-EAS406:5:54:89:1691#0 1 1 76 55215 55290 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5407-5482] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/55348-57402] There are [267] sequences in this contig [GAAAAAGGGGGCTAGCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAA] HWI-EAS406:5:71:963:1069#0 1 1 76 55357 55432 [TGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAG] HWI-EAS406:5:90:718:827#0 1 1 76 55395 55470 [GTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGA] HWI-EAS406:6:50:1068:1124#0 1 1 76 55396 55471 [TTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGAT] HWI-EAS406:7:46:487:1859#0 1 1 76 55397 55472 [GTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGA] HWI-EAS406:7:93:476:1080#0 1 1 76 55421 55496 [AGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAAT] HWI-EAS406:5:75:1472:1372#0 1 1 76 55423 55498 [TTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATT] HWI-EAS406:5:23:784:918#0 1 1 76 55427 55502 [TCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTG] HWI-EAS406:7:54:921:569#0 1 1 76 55428 55503 [AGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTA] HWI-EAS406:5:62:285:936#0 1 1 76 55432 55507 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:5:57:761:2009#0 1 1 76 55439 55514 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:6:36:654:544#0 1 1 76 55439 55514 [TAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTT] HWI-EAS406:5:47:1330:1958#0 1 1 76 55443 55518 [GTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGA] HWI-EAS406:7:46:1751:277#0 1 1 76 55447 55522 [TTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAG] HWI-EAS406:5:48:1050:431#0 1 1 76 55451 55526 [AGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGG] HWI-EAS406:5:56:1503:1888#0 1 1 76 55453 55528 [GGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGT] HWI-EAS406:5:63:235:1522#0 1 1 76 55454 55529 [ATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAG] HWI-EAS406:7:57:718:866#0 1 1 76 55456 55531 [CTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAA] HWI-EAS406:5:63:881:1689#0 1 1 76 55458 55533 [GGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATG] HWI-EAS406:5:56:1714:198#0 1 1 76 55463 55538 [GTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGG] HWI-EAS406:6:50:1063:640#0 1 1 76 55464 55539 [AGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATT] HWI-EAS406:7:91:607:301#0 1 1 76 55469 55544 [TGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAG] HWI-EAS406:5:46:26:1147#0 1 1 76 55472 55547 [GTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTG] HWI-EAS406:7:45:628:1522#0 1 1 76 55477 55552 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:6:87:1690:975#0 1 1 76 55480 55555 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:7:56:137:573#0 1 1 76 55480 55555 [GGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATG] HWI-EAS406:7:68:1555:1689#0 1 1 76 55481 55556 [GTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGC] HWI-EAS406:5:58:682:1738#0 1 1 76 55482 55557 [GACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGA] HWI-EAS406:6:31:1175:1548#0 1 1 76 55486 55561 [CATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGT] HWI-EAS406:5:41:613:1556#0 1 1 76 55488 55563 [AATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCT] HWI-EAS406:7:35:208:92#0 1 1 76 55496 55571 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:6:59:1065:1018#0 1 1 76 55499 55574 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:7:62:287:374#0 1 1 76 55499 55574 [TTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATAT] HWI-EAS406:5:60:1126:457#0 1 1 76 55509 55584 [TGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATT] HWI-EAS406:5:52:1074:921#0 1 1 76 55510 55585 [GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTA] HWI-EAS406:6:59:782:205#0 1 1 76 55511 55586 [ATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATG] HWI-EAS406:6:66:1100:1007#0 1 1 76 55513 55588 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:5:76:618:12#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:6:53:136:1281#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:7:54:741:1995#0 1 1 76 55515 55590 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:5:49:1651:561#0 1 1 76 55517 55592 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:7:42:801:728#0 1 1 76 55517 55592 [AACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTT] HWI-EAS406:6:58:52:1428#0 1 1 76 55532 55607 [TGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTT] HWI-EAS406:5:51:1107:1138#0 1 1 76 55537 55612 [GGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTG] HWI-EAS406:6:51:1655:1268#0 1 1 76 55538 55613 [AGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAA] HWI-EAS406:7:52:109:1569#0 1 1 76 55546 55621 [GCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAAC] HWI-EAS406:6:51:638:1649#0 1 1 76 55547 55622 [TGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACC] HWI-EAS406:6:54:1524:978#0 1 1 76 55551 55626 [CCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTT] HWI-EAS406:6:57:1473:655#0 1 1 76 55569 55644 [AGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCT] HWI-EAS406:5:49:831:1474#0 1 1 76 55577 55652 [TATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAAT] HWI-EAS406:5:51:1389:835#0 1 1 76 55582 55657 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:5:46:340:348#0 1 1 76 55587 55662 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:7:56:1390:1023#0 1 1 76 55587 55662 [CAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAAT] HWI-EAS406:6:51:162:1427#0 1 1 76 55591 55666 [TGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAA] HWI-EAS406:6:56:1638:945#0 1 1 76 55594 55669 [GCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTC] HWI-EAS406:5:48:1495:1062#0 1 1 76 55601 55676 [CTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTT] HWI-EAS406:6:46:718:1420#0 1 1 76 55605 55680 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:491:137#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:874:1585#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:49:1696:321#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:82:1616:1924#0 1 1 76 55606 55681 [GAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACC] HWI-EAS406:5:7:563:689#0 1 1 76 55613 55688 [AAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGA] HWI-EAS406:7:55:573:1885#0 1 1 76 55619 55694 [AACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGAC] HWI-EAS406:7:56:1249:1152#0 1 1 76 55620 55695 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:42:25:1251#0 1 1 76 55623 55698 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:52:505:1902#0 1 1 76 55623 55698 [TTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACC] HWI-EAS406:7:52:999:403#0 1 1 76 55627 55702 [ATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCA] HWI-EAS406:7:46:1627:1353#0 1 1 76 55636 55711 [TATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCAT] HWI-EAS406:5:45:1490:1390#0 1 1 76 55637 55712 [TGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTT] HWI-EAS406:5:50:662:1986#0 1 1 76 55639 55714 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:42:1301:800#0 1 1 76 55643 55718 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:46:1577:1890#0 1 1 76 55643 55718 [CTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTC] HWI-EAS406:7:51:669:996#0 1 1 76 55649 55724 [TTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACC] HWI-EAS406:6:41:993:1893#0 1 1 76 55652 55727 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:40:957:1998#0 1 1 76 55653 55728 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:54:1081:289#0 1 1 76 55653 55728 [TCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATG] HWI-EAS406:6:43:1323:680#0 1 1 76 55657 55732 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:13:1242:1637#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:59:719:373#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:7:61:535:209#0 1 1 76 55660 55735 [GAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGT] HWI-EAS406:5:29:789:396#0 1 1 76 55663 55738 [AAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTT] HWI-EAS406:5:57:1125:1370#0 1 1 76 55667 55742 [AAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTA] HWI-EAS406:5:52:46:1447#0 1 1 76 55668 55743 [AGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAAT] HWI-EAS406:6:47:1369:425#0 1 1 76 55670 55745 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:57:74:1491#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:64:106:1410#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:7:50:633:1788#0 1 1 76 55674 55749 [CTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGA] HWI-EAS406:7:61:1532:1262#0 1 1 76 55678 55753 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:40:151:1251#0 1 1 76 55681 55756 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:54:251:1597#0 1 1 76 55681 55756 [CAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTG] HWI-EAS406:6:55:94:1866#0 1 1 76 55684 55759 [AAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGA] HWI-EAS406:6:28:85:1002#0 1 1 76 55689 55764 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:34:431:1336#0 1 1 76 55693 55768 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:55:1108:653#0 1 1 76 55693 55768 [TTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGA] HWI-EAS406:6:51:1014:1766#0 1 1 76 55713 55788 [GCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGG] HWI-EAS406:7:4:629:1835#0 1 1 76 55878 55953 [CCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTT] HWI-EAS406:5:73:1450:1470#0 1 1 76 55882 55957 [TATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTAT] HWI-EAS406:7:84:817:413#0 1 1 76 55902 55977 [TTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGG] HWI-EAS406:7:27:1672:525#0 1 1 76 55947 56022 [TTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTT] HWI-EAS406:5:90:624:1900#0 1 1 76 55989 56064 [ATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGT] HWI-EAS406:6:25:1007:1215#0 1 1 76 55996 56071 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:61:1428:1819#0 1 1 76 55997 56072 [ATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGA] HWI-EAS406:6:9:412:656#0 1 1 76 56002 56077 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:7:82:415:680#0 1 1 76 56006 56081 [TCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCAC] HWI-EAS406:5:74:590:268#0 1 1 76 56009 56084 [GTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACAT] HWI-EAS406:6:66:426:1137#0 1 1 76 56011 56086 [TAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGA] HWI-EAS406:6:86:83:1170#0 1 1 76 56014 56089 [AGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAG] HWI-EAS406:5:28:1738:1473#0 1 1 76 56015 56090 [TTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC] HWI-EAS406:7:52:567:938#0 1 1 76 56018 56093 [GTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGA] HWI-EAS406:7:36:829:1115#0 1 1 76 56033 56108 [TTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCT] HWI-EAS406:5:22:117:626#0 1 1 76 56046 56121 [CATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAA] HWI-EAS406:6:3:1422:1893#0 1 1 76 56050 56125 [AGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTG] HWI-EAS406:6:75:599:1385#0 1 1 76 56058 56133 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACA] HWI-EAS406:5:67:412:1880#0 1 1 76 56111 56186 [ATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACAC] HWI-EAS406:6:92:1318:383#0 1 1 76 56112 56187 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCA] HWI-EAS406:7:60:1069:1928#0 1 1 76 56117 56192 [CAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCG] HWI-EAS406:5:82:677:1783#0 1 1 76 56122 56197 [AGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTAT] HWI-EAS406:5:16:298:1865#0 1 1 76 56137 56212 [GCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGAC] HWI-EAS406:7:40:1346:617#0 1 1 76 56160 56235 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:5:86:546:731#0 1 1 76 56195 56270 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:7:82:1252:640#0 1 1 76 56195 56270 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:22:1001:501#0 1 1 76 56226 56301 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:68:540:1042#0 1 1 76 56226 56301 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:73:674:1605#0 1 1 76 56237 56312 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:95:794:603#0 1 1 76 56237 56312 [GTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGC] HWI-EAS406:7:35:252:634#0 1 1 76 56244 56319 [CGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCAT] HWI-EAS406:5:8:286:980#0 1 1 76 56250 56325 [CTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCT] HWI-EAS406:7:2:863:788#0 1 1 76 56263 56338 [CGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCG] HWI-EAS406:5:71:330:1040#0 1 1 76 56265 56340 [CGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGA] HWI-EAS406:7:24:1479:1294#0 1 1 76 56271 56346 [AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAG] HWI-EAS406:6:9:352:544#0 1 1 76 56281 56356 [CCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGA] HWI-EAS406:6:26:317:742#0 1 1 76 56284 56359 [CGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGAC] HWI-EAS406:5:15:749:198#0 1 1 76 56285 56360 [ACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGA] HWI-EAS406:5:48:199:1803#0 1 1 76 56292 56367 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:6:74:1789:781#0 1 1 76 56305 56380 [ACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTAT] HWI-EAS406:5:68:91:1454#0 1 1 76 56310 56385 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:5:39:1537:832#0 1 1 76 56311 56386 [GAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGG] HWI-EAS406:6:3:1014:489#0 1 1 76 56312 56387 [CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGA] HWI-EAS406:7:63:606:2004#0 1 1 76 56317 56392 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:58:773:1386#0 1 1 76 56322 56397 [CACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGC] HWI-EAS406:6:5:746:1848#0 1 1 76 56328 56403 [TCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGA] HWI-EAS406:6:36:329:384#0 1 1 76 56338 56413 [CAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAG] HWI-EAS406:6:68:310:1837#0 1 1 76 56352 56427 [GCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGAC] HWI-EAS406:6:15:1389:1537#0 1 1 76 56356 56431 [CACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGACCCAC] HWI-EAS406:5:70:1186:1514#0 1 1 76 56360 56435 [GAGTGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:5:16:713:561#0 1 1 76 56412 56487 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:86:116:1250#0 1 1 76 56451 56526 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:7:22:1229:1224#0 1 1 76 56456 56531 [TGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTC] HWI-EAS406:5:75:885:1647#0 1 1 76 56465 56540 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:99:1323:2030#0 1 1 76 56471 56546 [GCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCAT] HWI-EAS406:6:36:1768:749#0 1 1 76 56472 56547 [ACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTAT] HWI-EAS406:5:64:1031:433#0 1 1 76 56475 56550 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:54:449:1311#0 1 1 76 56480 56555 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:821:1114#0 1 1 76 56481 56556 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:51:119:1731#0 1 1 76 56481 56556 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:6:54:1070:416#0 1 1 76 56623 56698 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:5:76:1124:1673#0 1 1 76 56655 56730 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:6:86:910:364#0 1 1 76 56655 56730 [CTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAA] HWI-EAS406:5:77:1007:635#0 1 1 76 56669 56744 [TCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAAT] HWI-EAS406:5:6:1619:1892#0 1 1 76 56670 56745 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:75:896:271#0 1 1 76 56680 56755 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:6:93:695:831#0 1 1 76 56683 56758 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:7:47:1300:725#0 1 1 76 56683 56758 [TGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGA] HWI-EAS406:5:9:1290:1387#0 1 1 76 56690 56765 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:19:599:1637#0 1 1 76 56692 56767 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:42:1233:1944#0 1 1 76 56693 56768 [GTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGG] HWI-EAS406:7:43:1340:1098#0 1 1 76 56697 56772 [TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGAT] HWI-EAS406:7:77:529:595#0 1 1 76 56701 56776 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1026:1702#0 1 1 76 56702 56777 [TGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAG] HWI-EAS406:7:74:472:989#0 1 1 76 56704 56779 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:38:1310:724#0 1 1 76 56708 56783 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:36:1704:1002#0 1 1 76 56709 56784 [CTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATC] HWI-EAS406:5:32:857:416#0 1 1 76 56713 56788 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:13:567:1632#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:72:1130:1035#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:11:320:1138#0 1 1 76 56716 56791 [TTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGG] HWI-EAS406:5:29:1531:1113#0 1 1 76 56721 56796 [TCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAA] HWI-EAS406:6:70:94:850#0 1 1 76 56723 56798 [TGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG] HWI-EAS406:5:56:283:533#0 1 1 76 56731 56806 [TTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTA] HWI-EAS406:7:54:629:1409#0 1 1 76 56734 56809 [TAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAG] HWI-EAS406:5:69:1170:963#0 1 1 76 56735 56810 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:5:59:659:573#0 1 1 76 56739 56814 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:7:10:1271:1176#0 1 1 76 56739 56814 [GAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGAT] HWI-EAS406:7:55:717:1077#0 1 1 76 56741 56816 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:5:49:951:1788#0 1 1 76 56742 56817 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:6:44:1440:809#0 1 1 76 56742 56817 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:5:61:1761:440#0 1 1 76 56743 56818 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:5:56:427:636#0 1 1 76 56746 56821 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:45:818:1084#0 1 1 76 56746 56821 [ATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGAT] HWI-EAS406:5:48:1421:738#0 1 1 76 56751 56826 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:5:46:1433:471#0 1 1 76 56753 56828 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:6:46:758:450#0 1 1 76 56753 56828 [TTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTT] HWI-EAS406:6:85:924:1183#0 1 1 76 56757 56832 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:457:1255#0 1 1 76 56760 56835 [CATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGAT] HWI-EAS406:6:51:1250:1394#0 1 1 76 56768 56843 [ATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATG] HWI-EAS406:7:43:348:1667#0 1 1 76 56769 56844 [TGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAG] HWI-EAS406:7:51:693:440#0 1 1 76 56780 56855 [CCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATA] HWI-EAS406:7:61:270:674#0 1 1 76 56790 56865 [TTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTT] HWI-EAS406:6:100:780:1104#0 1 1 76 56793 56868 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:51:375:1103#0 1 1 76 56799 56874 [GAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATC] HWI-EAS406:7:43:1468:442#0 1 1 76 56812 56887 [TAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAAT] HWI-EAS406:7:43:612:1832#0 1 1 76 56817 56892 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:3:328:1741#0 1 1 76 56828 56903 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:51:928:1230#0 1 1 76 56828 56903 [GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAG] HWI-EAS406:6:61:1150:157#0 1 1 76 56841 56916 [ATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGT] HWI-EAS406:7:45:1719:1574#0 1 1 76 56842 56917 [TTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTG] HWI-EAS406:7:22:1656:1000#0 1 1 76 56847 56922 [TATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTC] HWI-EAS406:5:40:782:1903#0 1 1 76 56864 56939 [TTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACC] HWI-EAS406:7:47:1399:1840#0 1 1 76 56867 56942 [CTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGA] HWI-EAS406:7:36:1214:128#0 1 1 76 56870 56945 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:6:67:659:674#0 1 1 76 56883 56958 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:5:34:482:363#0 1 1 76 56884 56959 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:6:31:1738:245#0 1 1 76 56884 56959 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:5:17:980:1498#0 1 1 76 56890 56965 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:6:43:1069:537#0 1 1 76 56890 56965 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:6:60:1237:1921#0 1 1 76 56892 56967 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:7:62:1556:1902#0 1 1 76 56892 56967 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:45:845:1882#0 1 1 76 56893 56968 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:10:320:1442#0 1 1 76 56894 56969 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:85:939:1848#0 1 1 76 56894 56969 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:6:21:964:532#0 1 1 76 56895 56970 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:7:11:715:1562#0 1 1 76 56895 56970 [TCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGAC] HWI-EAS406:6:83:1490:1557#0 1 1 76 56896 56971 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:5:83:1238:1840#0 1 1 76 56897 56972 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:6:51:1716:996#0 1 1 76 56897 56972 [TTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAA] HWI-EAS406:7:30:372:1304#0 1 1 76 56898 56973 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:19:739:163#0 1 1 76 56899 56974 [CTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACT] HWI-EAS406:6:99:1305:973#0 1 1 76 56900 56975 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:5:68:1372:1083#0 1 1 76 56902 56977 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:7:21:892:1201#0 1 1 76 56902 56977 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:42:1519:306#0 1 1 76 56903 56978 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:43:649:1817#0 1 1 76 56903 56978 [TTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT] HWI-EAS406:5:48:1749:825#0 1 1 76 56905 56980 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:63:1363:862#0 1 1 76 56906 56981 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:7:49:763:1786#0 1 1 76 56907 56982 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:6:80:1615:1056#0 1 1 76 56909 56984 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:36:1452:570#0 1 1 76 56911 56986 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:65:397:1874#0 1 1 76 56911 56986 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:7:71:215:1096#0 1 1 76 56914 56989 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:5:94:1025:901#0 1 1 76 56917 56992 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:6:51:1633:1293#0 1 1 76 56917 56992 [TGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTAT] HWI-EAS406:5:4:1293:1664#0 1 1 76 56918 56993 [GTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATA] HWI-EAS406:7:54:1634:1722#0 1 1 76 56919 56994 [TTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATAC] HWI-EAS406:6:67:934:751#0 1 1 76 56920 56995 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:47:490:994#0 1 1 76 56922 56997 [TTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCA] HWI-EAS406:5:44:1294:1484#0 1 1 76 56927 57002 [TAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAA] HWI-EAS406:5:84:526:435#0 1 1 76 56928 57003 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:45:1491:692#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:89:1540:722#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:10:510:1378#0 1 1 76 56929 57004 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:5:40:1126:1227#0 1 1 76 56938 57013 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:70:23:1316#0 1 1 76 56938 57013 [CACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTT] HWI-EAS406:5:63:428:752#0 1 1 76 56939 57014 [ACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTG] HWI-EAS406:6:61:1137:1230#0 1 1 76 56940 57015 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:5:56:1494:1229#0 1 1 76 56943 57018 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:5:49:1013:1360#0 1 1 76 56957 57032 [AAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGC] HWI-EAS406:7:14:1303:1511#0 1 1 76 56959 57034 [CTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGTA] HWI-EAS406:7:55:713:259#0 1 1 76 56976 57051 [GATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTA] HWI-EAS406:5:53:850:1541#0 1 1 76 57029 57104 [TGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCA] HWI-EAS406:7:56:1093:1703#0 1 1 76 57044 57119 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:86:1123:1484#0 1 1 76 57054 57129 [CTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCT] HWI-EAS406:5:69:567:774#0 1 1 76 57059 57134 [TGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAG] HWI-EAS406:6:44:1168:1730#0 1 1 76 57093 57168 [ATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTG] HWI-EAS406:7:52:50:1064#0 1 1 76 57097 57172 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:7:52:1393:1554#0 1 1 76 57100 57175 [GTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTG] HWI-EAS406:6:56:338:841#0 1 1 76 57101 57176 [TCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTT] HWI-EAS406:7:58:819:1006#0 1 1 76 57117 57192 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:5:36:8:1006#0 1 1 76 57122 57197 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/58204-58279] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5838-5980] There are [3] sequences in this contig [CCAGGAACCAGACTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGAC] HWI-EAS406:6:65:880:1505#0 1 1 76 5846 5921 [CTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCT] HWI-EAS406:5:68:1151:38#0 1 1 76 5858 5933 [CTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTTTTGGCCACAG] HWI-EAS406:6:51:497:1007#0 1 1 76 5885 5960 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59180-59255] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59564-59639] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6019-6218] There are [3] sequences in this contig [CTGCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTAATCC] HWI-EAS406:5:47:756:602#0 1 1 76 6019 6094 [CAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGG] HWI-EAS406:6:1:1675:1977#0 1 1 76 6118 6193 [AACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGA] HWI-EAS406:7:67:608:1846#0 1 1 76 6143 6218 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/60981-61108] There are [3] sequences in this contig [CCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCC] HWI-EAS406:7:49:917:519#0 1 1 76 60981 61056 [GCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCAT] HWI-EAS406:5:52:235:104#0 1 1 76 61008 61083 [CTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGC] HWI-EAS406:6:63:1158:1175#0 1 1 76 61033 61108 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61200-61321] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61378-61517] There are [3] sequences in this contig [CCTCTCAGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAA] HWI-EAS406:7:100:1619:467#0 1 1 76 61378 61453 [AGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAG] HWI-EAS406:7:53:1655:1631#0 1 1 76 61384 61459 [TTGGGTTCACAAGTACAGCTCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTT] HWI-EAS406:7:97:876:768#0 1 1 76 61442 61517 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61593-61724] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62569-62649] There are [2] sequences in this contig [GGTATGTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGC] HWI-EAS406:7:28:1332:725#0 1 1 76 62569 62644 [GTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGC] HWI-EAS406:5:33:728:1075#0 1 1 76 62574 62649 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62662-63010] There are [4] sequences in this contig [TTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCTTATCTTACTCCTACTAATACATAC] HWI-EAS406:7:60:936:1903#0 1 1 76 62669 62744 [TATAAGCTTATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAG] HWI-EAS406:6:4:1187:950#0 1 1 76 62713 62788 [CTAGGAAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAA] HWI-EAS406:6:86:576:1275#0 1 1 76 62839 62914 [AAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAG] HWI-EAS406:5:34:1205:1314#0 1 1 76 62844 62919 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63019-63141] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63695-63788] There are [2] sequences in this contig [GCTTTACAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC] HWI-EAS406:6:74:1616:1302#0 1 1 76 63695 63770 [AGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTCTCAGGTCCGTTTTAGTCT] HWI-EAS406:7:50:829:192#0 1 1 76 63713 63788 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63912-64054] There are [2] sequences in this contig [GTGTGTTAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAA] HWI-EAS406:7:40:667:1044#0 1 1 76 63973 64048 [TAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGATCTC] HWI-EAS406:7:82:846:2011#0 1 1 76 63979 64054 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64197-64278] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64487-64586] There are [2] sequences in this contig [AACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTG] HWI-EAS406:7:73:1763:946#0 1 1 76 64487 64562 [TTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCT] HWI-EAS406:6:16:1080:412#0 1 1 76 64511 64586 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64588-64674] There are [2] sequences in this contig [TTGTTCATTTTTAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGA] HWI-EAS406:6:68:677:1734#0 1 1 76 64588 64663 [TAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAG] HWI-EAS406:7:55:962:1888#0 1 1 76 64599 64674 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64700-64901] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6476-6551] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66034-66109] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66927-67002] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67589-67700] There are [2] sequences in this contig [CACCGCTCGCTTCTCTTTAAATGCTTCTCCAGTTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAA] HWI-EAS406:5:59:105:1182#0 1 1 76 67589 67664 [ATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGGTCGTTTGTAC] HWI-EAS406:6:34:1644:1455#0 1 1 76 67625 67700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67814-67915] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6801-6876] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69468-69657] There are [4] sequences in this contig [TCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGT] HWI-EAS406:6:14:421:1719#0 1 1 76 69468 69543 [CAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTC] HWI-EAS406:7:53:214:645#0 1 1 76 69477 69552 [AAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTCTTCTT] HWI-EAS406:7:79:858:1175#0 1 1 76 69510 69585 [GACTCTTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCACG] HWI-EAS406:6:7:930:1662#0 1 1 76 69576 69651 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69676-69917] There are [4] sequences in this contig [GAATCCTTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA] HWI-EAS406:7:11:1781:2005#0 1 1 76 69785 69860 [CAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGA] HWI-EAS406:7:56:1325:830#0 1 1 76 69820 69895 [AAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCG] HWI-EAS406:7:15:856:368#0 1 1 76 69840 69915 [GCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGT] HWI-EAS406:7:66:201:1411#0 1 1 76 69842 69917 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69978-70113] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/70804-71412] There are [13] sequences in this contig [GCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTC] HWI-EAS406:5:35:525:525#0 1 1 76 70860 70935 [TTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTAC] HWI-EAS406:7:50:1763:639#0 1 1 76 70882 70957 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:5:52:15:1698#0 1 1 76 70894 70969 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:6:1:212:802#0 1 1 76 70894 70969 [GCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGCACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAA] HWI-EAS406:6:46:878:1641#0 1 1 76 70941 71016 [TCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAA] HWI-EAS406:5:67:1116:707#0 1 1 76 71002 71077 [GATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCAC] HWI-EAS406:7:82:1452:1150#0 1 1 76 71026 71101 [AATCTTGCTGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAA] HWI-EAS406:7:14:1272:786#0 1 1 76 71111 71186 [TGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGA] HWI-EAS406:6:73:966:569#0 1 1 76 71119 71194 [TATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGACGCTAATGT] HWI-EAS406:6:23:116:1828#0 1 1 76 71128 71203 [AACACAACTCTCTTGTTGGTCACAATGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATA] HWI-EAS406:6:65:1248:1907#0 1 1 76 71236 71311 [TCATAGCAATCAGATAAAGCGAATTTTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCG] HWI-EAS406:7:71:632:736#0 1 1 76 71296 71371 [TTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAA] HWI-EAS406:6:14:583:1629#0 1 1 76 71321 71396 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71460-71625] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71712-72235] There are [9] sequences in this contig [CAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCA] HWI-EAS406:6:74:340:1085#0 1 1 76 71712 71787 [GATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATC] HWI-EAS406:6:69:273:955#0 1 1 76 71730 71805 [CCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAAAAAATCCAAT] HWI-EAS406:7:76:136:1326#0 1 1 76 71755 71830 [TCCAATTCCATCAACAGTCAATGAGAAAAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCC] HWI-EAS406:6:4:1341:1767#0 1 1 76 71794 71869 [TTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCT] HWI-EAS406:6:73:657:928#0 1 1 76 71845 71920 [GAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCTACAGGC] HWI-EAS406:6:69:608:788#0 1 1 76 71851 71926 [TACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACACCCTGTGCTAGGGC] HWI-EAS406:7:39:1441:509#0 1 1 76 71898 71973 [CCTGATACCCCGAAGGCAACACCCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCC] HWI-EAS406:5:42:630:1855#0 1 1 76 71939 72014 [TAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAGCCAATGTTGAGCTAGTCATACCCAAA] HWI-EAS406:7:3:247:1105#0 1 1 76 72121 72196 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72334-72409] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/7238-7313] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72551-72721] There are [3] sequences in this contig [GACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACAACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAA] HWI-EAS406:5:63:280:2016#0 1 1 76 72551 72626 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:684:1767#0 1 1 76 72623 72698 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:687:1768#0 1 1 76 72623 72698 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72764-72920] There are [3] sequences in this contig [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:58:933:1075#0 1 1 76 72764 72839 [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:96:138:1491#0 1 1 76 72764 72839 [GACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCC] HWI-EAS406:5:32:1193:610#0 1 1 76 72783 72858 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73189-73264] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73618-73693] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/74319-74394] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75333-75500] There are [3] sequences in this contig [GCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCATTTTTCTTATTTCGAAATG] HWI-EAS406:6:62:1449:2033#0 1 1 76 75333 75408 [TCGTCATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAA] HWI-EAS406:6:48:1707:1089#0 1 1 76 75384 75459 [CATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAGTGT] HWI-EAS406:7:65:460:691#0 1 1 76 75388 75463 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75502-75924] There are [5] sequences in this contig [CATAGATTCTGATCATCTTCGTCAAAACTTTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCT] HWI-EAS406:5:59:1508:1093#0 1 1 76 75502 75577 [AACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAA] HWI-EAS406:5:58:256:560#0 1 1 76 75611 75686 [AAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGAC] HWI-EAS406:5:46:1388:1875#0 1 1 76 75627 75702 [GAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAG] HWI-EAS406:7:17:923:1142#0 1 1 76 75653 75728 [AATGTGTTCCTAGCTGATGTGAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCA] HWI-EAS406:5:81:885:1582#0 1 1 76 75791 75866 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76023-76205] There are [2] sequences in this contig [GTATATCTTTAGCGATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACT] HWI-EAS406:6:79:1647:121#0 1 1 76 76077 76152 [TTATTATGTCCGGGAGAAGTACTGCTTATCTGAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATAC] HWI-EAS406:7:47:560:1036#0 1 1 76 76130 76205 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76211-76536] There are [5] sequences in this contig [TCAGACTCTGATTCACAAGCAACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCAT] HWI-EAS406:5:49:1688:659#0 1 1 76 76211 76286 [AACTCCAAGAATATTCAGAACCATCAGTCATTACACACTTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCC] HWI-EAS406:5:45:1087:1438#0 1 1 76 76263 76338 [ACAAGGGAACCGGTAATATATCGCCAGGCTTCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTC] HWI-EAS406:5:76:620:1542#0 1 1 76 76341 76416 [ATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGA] HWI-EAS406:5:25:1291:1892#0 1 1 76 76390 76465 [TGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGAGAC] HWI-EAS406:6:94:1284:238#0 1 1 76 76393 76468 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76543-76712] There are [2] sequences in this contig [GCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCCAAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATT] HWI-EAS406:6:32:835:791#0 1 1 76 76547 76622 [GATTTTCCTTGCTCCACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTT] HWI-EAS406:7:47:562:1860#0 1 1 76 76637 76712 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76854-76955] There are [2] sequences in this contig [CAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTG] HWI-EAS406:7:59:843:1966#0 1 1 76 76863 76938 [CCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTGTCCTTCATATATCGTGC] HWI-EAS406:6:30:986:1830#0 1 1 76 76880 76955 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77243-77318] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77350-77456] There are [2] sequences in this contig [ATGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAG] HWI-EAS406:6:2:544:249#0 1 1 76 77350 77425 [AGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAGTATTCAGGGGATAAAATAAACATTAGGCCAA] HWI-EAS406:7:9:136:308#0 1 1 76 77381 77456 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77795-77870] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77917-77992] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/78794-78971] There are [3] sequences in this contig [GCCATTATTTTCACGCAGATAAGTACGCCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAA] HWI-EAS406:7:65:1503:1068#0 1 1 76 78794 78869 [CCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCCAATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCA] HWI-EAS406:7:74:546:1750#0 1 1 76 78856 78931 [CTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAATCTCCTTGGTGG] HWI-EAS406:7:58:577:1389#0 1 1 76 78896 78971 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79009-79502] There are [9] sequences in this contig [TCATTGCCTATGCCCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAG] HWI-EAS406:6:94:925:835#0 1 1 76 79009 79084 [CCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACC] HWI-EAS406:5:25:1538:777#0 1 1 76 79022 79097 [TCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGCTACCATATCGCTAC] HWI-EAS406:6:54:1199:1064#0 1 1 76 79039 79114 [CTTCAGCAAAACGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGA] HWI-EAS406:6:30:384:1985#0 1 1 76 79079 79154 [CGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATG] HWI-EAS406:7:50:1278:1079#0 1 1 76 79090 79165 [CAACACAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTTT] HWI-EAS406:6:32:1409:445#0 1 1 76 79166 79241 [TCCAGAAAGATATACTTTCAACTCCTCTGTGTTTCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAG] HWI-EAS406:5:40:817:1242#0 1 1 76 79208 79283 [TAATTAACATGCACCTTGCCACCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAAC] HWI-EAS406:7:59:1471:766#0 1 1 76 79360 79435 [ATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAAATAAGCCATCCCCTCAGTAATGATTGGTCTC] HWI-EAS406:5:27:1356:1536#0 1 1 76 79406 79481 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79560-79686] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80173-80264] There are [2] sequences in this contig [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:40:61:86#0 1 1 76 80173 80248 [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:84:334:829#0 1 1 76 80173 80248 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80381-80456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80474-80593] There are [2] sequences in this contig [CCTTTAGTAGGTGGTTTGTCCCTGCCATGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTA] HWI-EAS406:7:31:547:1433#0 1 1 76 80474 80549 [TGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGATGACTAACAATGGTGTCAAATAGT] HWI-EAS406:7:51:987:613#0 1 1 76 80518 80593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80693-80806] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81002-81160] There are [6] sequences in this contig [CAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGATAAAACTATGAACAACA] HWI-EAS406:7:8:677:936#0 1 1 76 81002 81077 [AGAAGGAAAGACGATAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACT] HWI-EAS406:5:55:1278:821#0 1 1 76 81047 81122 [AAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAA] HWI-EAS406:6:7:456:1419#0 1 1 76 81063 81138 [ACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACA] HWI-EAS406:7:66:679:662#0 1 1 76 81065 81140 [GATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGA] HWI-EAS406:7:11:328:1615#0 1 1 76 81078 81153 [AAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGAGAAGCCA] HWI-EAS406:5:72:1783:898#0 1 1 76 81085 81160 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81206-81367] There are [2] sequences in this contig [AGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCCTGCAGCAGCGG] HWI-EAS406:7:41:368:198#0 1 1 76 81206 81281 [TCTGGGCCGATAGCCTGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCC] HWI-EAS406:5:63:1251:970#0 1 1 76 81256 81331 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81438-81567] There are [3] sequences in this contig [TGTTTGGGGACTTTATGATATTCTTCCAACACAACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCA] HWI-EAS406:6:49:1020:1226#0 1 1 76 81449 81524 [CCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCAT] HWI-EAS406:7:59:585:870#0 1 1 76 81489 81564 [CTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCATAAT] HWI-EAS406:6:69:1662:1635#0 1 1 76 81492 81567 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81782-81899] There are [4] sequences in this contig [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:57:1435:640#0 1 1 76 81793 81868 [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:70:465:1192#0 1 1 76 81793 81868 [CAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGAC] HWI-EAS406:5:9:917:255#0 1 1 76 81809 81884 [CCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATT] HWI-EAS406:7:86:763:397#0 1 1 76 81824 81899 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81934-82330] There are [9] sequences in this contig [ACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATAC] HWI-EAS406:5:7:1488:1277#0 1 1 76 81934 82009 [GGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAAC] HWI-EAS406:5:39:1072:726#0 1 1 76 81944 82019 [ATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCA] HWI-EAS406:5:29:1064:1350#0 1 1 76 81975 82050 [GCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGG] HWI-EAS406:6:46:915:308#0 1 1 76 81992 82067 [TTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCT] HWI-EAS406:7:73:614:1639#0 1 1 76 82001 82076 [GGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCG] HWI-EAS406:7:7:475:933#0 1 1 76 82014 82089 [AATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATC] HWI-EAS406:7:4:976:1341#0 1 1 76 82039 82114 [AAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATCTCTGATCTCCA] HWI-EAS406:7:92:1125:1958#0 1 1 76 82050 82125 [CCTACAGCAAGTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAA] HWI-EAS406:7:61:1097:746#0 1 1 76 82171 82246 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82392-82467] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82759-82857] There are [2] sequences in this contig [TATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGC] HWI-EAS406:7:74:1207:352#0 1 1 76 82759 82834 [CAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACA] HWI-EAS406:5:55:744:216#0 1 1 76 82782 82857 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82919-83082] There are [3] sequences in this contig [TTCAGTTTGAGCAGCATTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCA] HWI-EAS406:5:71:1520:1633#0 1 1 76 82919 82994 [TTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGG] HWI-EAS406:6:68:737:221#0 1 1 76 82935 83010 [ATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGC] HWI-EAS406:5:50:1274:668#0 1 1 76 82940 83015 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83150-83237] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83601-83697] There are [3] sequences in this contig [TCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAA] HWI-EAS406:7:47:909:638#0 1 1 76 83601 83676 [ACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGT] HWI-EAS406:5:57:263:916#0 1 1 76 83607 83682 [GAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATC] HWI-EAS406:5:56:421:1257#0 1 1 76 83622 83697 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84236-84447] There are [4] sequences in this contig [ATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGA] HWI-EAS406:5:97:1523:1879#0 1 1 76 84236 84311 [ATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGA] HWI-EAS406:6:51:787:579#0 1 1 76 84248 84323 [GCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTACGGAATACCTTGGATATTGATAGT] HWI-EAS406:5:11:1432:1580#0 1 1 76 84299 84374 [AGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAAAAGTATAATCTAACCTTAATATCTGTT] HWI-EAS406:7:56:662:2012#0 1 1 76 84372 84447 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84452-84888] There are [7] sequences in this contig [GACAATGTCGCAAACTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGA] HWI-EAS406:5:73:271:319#0 1 1 76 84463 84538 [CTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGAT] HWI-EAS406:7:60:710:960#0 1 1 76 84477 84552 [CATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAA] HWI-EAS406:5:43:480:1536#0 1 1 76 84519 84594 [TAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACT] HWI-EAS406:5:40:1113:280#0 1 1 76 84548 84623 [AAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAG] HWI-EAS406:7:53:1638:399#0 1 1 76 84568 84643 [AGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCA] HWI-EAS406:5:19:278:1957#0 1 1 76 84579 84654 [CTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGA] HWI-EAS406:5:12:647:1325#0 1 1 76 84610 84685 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85154-85229] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85786-85861] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86083-86165] There are [2] sequences in this contig [TTCGAGAAGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTT] HWI-EAS406:7:98:985:875#0 1 1 76 86083 86158 [AGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGT] HWI-EAS406:7:27:843:73#0 1 1 76 86090 86165 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86285-86406] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86740-87073] There are [6] sequences in this contig [TTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATG] HWI-EAS406:6:50:544:1942#0 1 1 76 86740 86815 [AAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAAT] HWI-EAS406:5:24:899:1507#0 1 1 76 86778 86853 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:5:27:651:758#0 1 1 76 86889 86964 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:7:36:939:388#0 1 1 76 86889 86964 [CAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAA] HWI-EAS406:6:44:1640:635#0 1 1 76 86963 87038 [AAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGT] HWI-EAS406:5:21:792:990#0 1 1 76 86982 87057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87100-87175] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87411-87579] There are [5] sequences in this contig [GTTCACGCTTATAGTCGTCCTGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCAT] HWI-EAS406:5:40:963:792#0 1 1 76 87411 87486 [TTTAGAAAATTCAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAG] HWI-EAS406:5:29:1062:180#0 1 1 76 87468 87543 [CAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGT] HWI-EAS406:6:33:1466:1038#0 1 1 76 87479 87554 [ATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAA] HWI-EAS406:6:74:560:575#0 1 1 76 87485 87560 [AAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT] HWI-EAS406:7:36:1097:534#0 1 1 76 87495 87570 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87843-87918] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88084-88247] There are [3] sequences in this contig [CAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAA] HWI-EAS406:5:28:328:364#0 1 1 76 88084 88159 [ACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAAT] HWI-EAS406:7:46:1492:580#0 1 1 76 88096 88171 [TCCATCAATAGAGTCCTTCAGATACTGCAGGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATA] HWI-EAS406:6:28:859:934#0 1 1 76 88172 88247 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88301-88432] There are [2] sequences in this contig [TTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGG] HWI-EAS406:7:81:841:1025#0 1 1 76 88301 88376 [CAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGC] HWI-EAS406:7:15:996:61#0 1 1 76 88304 88379 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88501-88726] There are [4] sequences in this contig [GCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCTTAATGGAGCAATTAAGATCTTCACAT] HWI-EAS406:5:44:57:1786#0 1 1 76 88501 88576 [TAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGAAGCATTACGCCTCATGTGTACCTCCAAGAATGTA] HWI-EAS406:7:54:1671:598#0 1 1 76 88579 88654 [TACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCT] HWI-EAS406:6:1:546:1653#0 1 1 76 88639 88714 [TGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCTATGACTTTATTT] HWI-EAS406:6:95:686:1267#0 1 1 76 88651 88726 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88728-89026] There are [7] sequences in this contig [TCCCAATCTTCATCGGTGAATTGAACAGATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATAC] HWI-EAS406:5:76:1379:738#0 1 1 76 88733 88808 [AGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTG] HWI-EAS406:7:31:1487:604#0 1 1 76 88854 88929 [TTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTC] HWI-EAS406:5:48:1276:1279#0 1 1 76 88870 88945 [TAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAA] HWI-EAS406:6:61:58:1492#0 1 1 76 88900 88975 [GTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAAT] HWI-EAS406:7:67:1335:152#0 1 1 76 88906 88981 [GCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGA] HWI-EAS406:5:96:791:1904#0 1 1 76 88929 89004 [ACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTA] HWI-EAS406:6:46:1014:1849#0 1 1 76 88951 89026 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/8886-8961] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89272-89444] There are [2] sequences in this contig [ACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTA] HWI-EAS406:5:46:1549:1266#0 1 1 76 89272 89347 [ACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGG] HWI-EAS406:7:42:1654:231#0 1 1 76 89310 89385 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89473-89625] There are [2] sequences in this contig [CTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAA] HWI-EAS406:5:54:722:1131#0 1 1 76 89549 89624 [TCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAAA] HWI-EAS406:5:47:1791:1774#0 1 1 76 89550 89625 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89972-90047] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/90365-90440] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91000-91075] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91078-91153] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92058-92240] There are [3] sequences in this contig [ATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTAGAGAGCGGATGGA] HWI-EAS406:6:64:403:2030#0 1 1 76 92058 92133 [GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTAGGAGGA] HWI-EAS406:6:73:248:1987#0 1 1 76 92121 92196 [ATCGTTTCCTCAAGAACACGCAAGTAGGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACG] HWI-EAS406:5:52:985:957#0 1 1 76 92165 92240 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92249-92456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95489-95564] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95826-96392] There are [46] sequences in this contig [ATGTTAGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCA] HWI-EAS406:5:51:460:1579#0 1 1 76 95826 95901 [TTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAG] HWI-EAS406:5:51:996:890#0 1 1 76 95836 95911 [TTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAA] HWI-EAS406:6:44:424:582#0 1 1 76 95838 95913 [CCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTAC] HWI-EAS406:7:55:1683:1558#0 1 1 76 95847 95922 [AAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAA] HWI-EAS406:5:37:874:1703#0 1 1 76 95855 95930 [AAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAAT] HWI-EAS406:7:60:861:1898#0 1 1 76 95871 95946 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:5:45:983:1815#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:6:50:725:1008#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:7:47:1467:1449#0 1 1 76 95873 95948 [TTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATT] HWI-EAS406:5:75:1577:1211#0 1 1 76 95875 95950 [GTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTA] HWI-EAS406:5:62:1054:483#0 1 1 76 95877 95952 [AGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTT] HWI-EAS406:5:3:1196:1080#0 1 1 76 95885 95960 [AGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAAC] HWI-EAS406:6:35:243:859#0 1 1 76 95903 95978 [GCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACT] HWI-EAS406:7:48:1680:776#0 1 1 76 95904 95979 [CAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAA] HWI-EAS406:5:84:623:1401#0 1 1 76 95916 95991 [AATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTT] HWI-EAS406:6:48:520:969#0 1 1 76 95929 96004 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:6:40:230:1515#0 1 1 76 95931 96006 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:7:47:1458:1361#0 1 1 76 95931 96006 [AAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTG] HWI-EAS406:7:54:1184:624#0 1 1 76 95934 96009 [TTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGC] HWI-EAS406:7:97:1095:736#0 1 1 76 95960 96035 [ACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTG] HWI-EAS406:5:51:1023:405#0 1 1 76 95977 96052 [TAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGG] HWI-EAS406:5:43:1053:715#0 1 1 76 95979 96054 [GCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCA] HWI-EAS406:5:48:1136:1031#0 1 1 76 95985 96060 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:5:62:1323:303#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:6:74:656:1327#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:7:47:1713:1453#0 1 1 76 95988 96063 [CAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCG] HWI-EAS406:6:57:630:1897#0 1 1 76 95992 96067 [AGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGA] HWI-EAS406:5:56:425:941#0 1 1 76 95993 96068 [GAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAA] HWI-EAS406:6:48:1251:976#0 1 1 76 95994 96069 [GATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAA] HWI-EAS406:7:21:585:1306#0 1 1 76 95998 96073 [ACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGA] HWI-EAS406:5:50:1455:1115#0 1 1 76 96001 96076 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:6:53:1165:1068#0 1 1 76 96003 96078 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:7:1:1156:1978#0 1 1 76 96003 96078 [CTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCA] HWI-EAS406:6:56:1607:1792#0 1 1 76 96006 96081 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:9:654:271#0 1 1 76 96007 96082 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:57:146:739#0 1 1 76 96007 96082 [GACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAAT] HWI-EAS406:5:85:313:1610#0 1 1 76 96009 96084 [AAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATC] HWI-EAS406:6:21:399:708#0 1 1 76 96013 96088 [GGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAA] HWI-EAS406:6:50:324:503#0 1 1 76 96015 96090 [GAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACT] HWI-EAS406:5:48:349:1571#0 1 1 76 96022 96097 [ATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCC] HWI-EAS406:7:41:1353:676#0 1 1 76 96036 96111 [ATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCCTAGACA] HWI-EAS406:6:93:442:832#0 1 1 76 96042 96117 [ACTATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTC] HWI-EAS406:6:53:189:1605#0 1 1 76 96095 96170 [ATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAA] HWI-EAS406:5:25:842:1349#0 1 1 76 96098 96173 [CCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCA] HWI-EAS406:7:49:569:1689#0 1 1 76 96103 96178 [ATTTCATCGAACACCTTTCGGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATG] HWI-EAS406:6:48:573:424#0 1 1 76 96302 96377 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96546-96743] There are [41] sequences in this contig [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:5:59:464:1284#0 1 1 76 96549 96624 [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:6:30:208:1363#0 1 1 76 96549 96624 [CAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAA] HWI-EAS406:5:39:1300:1111#0 1 1 76 96571 96646 [TGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAA] HWI-EAS406:7:52:386:1253#0 1 1 76 96578 96653 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:35:1367:1803#0 1 1 76 96580 96655 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:39:947:220#0 1 1 76 96580 96655 [ACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAAT] HWI-EAS406:7:26:1194:1131#0 1 1 76 96583 96658 [CTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATC] HWI-EAS406:7:7:1501:844#0 1 1 76 96584 96659 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:5:54:130:722#0 1 1 76 96590 96665 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:7:26:1334:829#0 1 1 76 96590 96665 [ATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATA] HWI-EAS406:5:39:225:226#0 1 1 76 96591 96666 [TCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAA] HWI-EAS406:5:25:1166:904#0 1 1 76 96592 96667 [CTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAAC] HWI-EAS406:5:72:728:1108#0 1 1 76 96593 96668 [ATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAA] HWI-EAS406:7:97:1596:710#0 1 1 76 96597 96672 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:6:77:1297:372#0 1 1 76 96603 96678 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:7:60:325:1845#0 1 1 76 96603 96678 [CTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATA] HWI-EAS406:6:46:1493:1364#0 1 1 76 96604 96679 [CTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAAC] HWI-EAS406:6:97:1626:350#0 1 1 76 96606 96681 [TTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACA] HWI-EAS406:6:89:439:326#0 1 1 76 96607 96682 [CCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAA] HWI-EAS406:5:52:846:1834#0 1 1 76 96612 96687 [CATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAA] HWI-EAS406:7:27:1352:654#0 1 1 76 96614 96689 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:5:12:18:1692#0 1 1 76 96615 96690 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:6:79:1502:1763#0 1 1 76 96615 96690 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:6:20:1277:1200#0 1 1 76 96618 96693 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:7:20:482:1782#0 1 1 76 96618 96693 [GATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGA] HWI-EAS406:5:88:761:589#0 1 1 76 96621 96696 [TTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGAT] HWI-EAS406:7:71:96:562#0 1 1 76 96624 96699 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:5:84:1251:1593#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:6:39:612:1266#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:7:29:339:747#0 1 1 76 96626 96701 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:5:35:237:1240#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:6:136:1637#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:19:1295:156#0 1 1 76 96628 96703 [ATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACT] HWI-EAS406:7:32:520:1318#0 1 1 76 96629 96704 [TAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTC] HWI-EAS406:7:88:48:1089#0 1 1 76 96631 96706 [ATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTG] HWI-EAS406:6:38:866:435#0 1 1 76 96646 96721 [AGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTT] HWI-EAS406:6:21:273:2005#0 1 1 76 96653 96728 [AAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCT] HWI-EAS406:6:65:1490:908#0 1 1 76 96655 96730 [TCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAA] HWI-EAS406:7:83:681:1286#0 1 1 76 96658 96733 [ATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATC] HWI-EAS406:5:17:710:1002#0 1 1 76 96664 96739 [CACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCCAAA] HWI-EAS406:6:63:971:1449#0 1 1 76 96668 96743 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96752-97468] There are [78] sequences in this contig [CCAAGTGCAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGG] HWI-EAS406:7:98:1610:812#0 1 1 76 96801 96876 [CAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACT] HWI-EAS406:7:24:560:1540#0 1 1 76 96808 96883 [AAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTT] HWI-EAS406:6:22:463:1392#0 1 1 76 96809 96884 [TAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTC] HWI-EAS406:6:25:466:1248#0 1 1 76 96822 96897 [AAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCC] HWI-EAS406:7:90:205:1555#0 1 1 76 96823 96898 [GCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAA] HWI-EAS406:6:27:1215:637#0 1 1 76 96828 96903 [AAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTC] HWI-EAS406:5:69:143:474#0 1 1 76 96831 96906 [CTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGG] HWI-EAS406:7:2:646:1440#0 1 1 76 96839 96914 [AAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAG] HWI-EAS406:6:69:1608:993#0 1 1 76 96865 96940 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:6:1:1134:1601#0 1 1 76 96867 96942 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:7:27:1186:269#0 1 1 76 96867 96942 [GACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACT] HWI-EAS406:6:47:1520:1770#0 1 1 76 96880 96955 [GCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGT] HWI-EAS406:7:2:1474:1109#0 1 1 76 96885 96960 [GGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACG] HWI-EAS406:6:5:1509:1517#0 1 1 76 96899 96974 [GGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGG] HWI-EAS406:7:33:201:1509#0 1 1 76 96900 96975 [TCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTG] HWI-EAS406:6:63:690:1073#0 1 1 76 96909 96984 [TTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGA] HWI-EAS406:6:63:980:824#0 1 1 76 96921 96996 [GGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTT] HWI-EAS406:6:74:319:1980#0 1 1 76 96925 97000 [GCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCT] HWI-EAS406:7:15:1248:709#0 1 1 76 96936 97011 [GAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCC] HWI-EAS406:5:27:1278:665#0 1 1 76 96938 97013 [GGCTTCGCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG] HWI-EAS406:5:16:1197:1307#0 1 1 76 97015 97090 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:12:498:898#0 1 1 76 97055 97130 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:15:449:1383#0 1 1 76 97055 97130 [TCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGT] HWI-EAS406:7:12:886:602#0 1 1 76 97057 97132 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:5:72:551:2005#0 1 1 76 97059 97134 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:7:54:1622:833#0 1 1 76 97059 97134 [TGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCC] HWI-EAS406:6:15:617:645#0 1 1 76 97063 97138 [TCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGG] HWI-EAS406:6:71:1065:1848#0 1 1 76 97065 97140 [CTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCT] HWI-EAS406:5:21:1187:208#0 1 1 76 97068 97143 [GGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTC] HWI-EAS406:6:74:1088:195#0 1 1 76 97073 97148 [GTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGC] HWI-EAS406:5:79:1567:1339#0 1 1 76 97077 97152 [GCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTC] HWI-EAS406:6:63:1541:1622#0 1 1 76 97080 97155 [CTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCT] HWI-EAS406:5:62:1176:406#0 1 1 76 97081 97156 [GAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA] HWI-EAS406:7:29:1109:1686#0 1 1 76 97085 97160 [GAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGT] HWI-EAS406:6:76:1137:734#0 1 1 76 97087 97162 [GGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGA] HWI-EAS406:5:17:466:948#0 1 1 76 97089 97164 [GGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGAT] HWI-EAS406:5:48:1356:1247#0 1 1 76 97090 97165 [GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATG] HWI-EAS406:5:76:713:1442#0 1 1 76 97091 97166 [TGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAAC] HWI-EAS406:7:9:1331:1496#0 1 1 76 97095 97170 [AGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCG] HWI-EAS406:6:40:1350:738#0 1 1 76 97097 97172 [ATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCG] HWI-EAS406:6:49:1132:1723#0 1 1 76 97099 97174 [GCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAG] HWI-EAS406:6:25:1330:1345#0 1 1 76 97101 97176 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:8:1401:420#0 1 1 76 97106 97181 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:9:1271:618#0 1 1 76 97106 97181 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:3:1199:1835#0 1 1 76 97111 97186 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:52:610:424#0 1 1 76 97111 97186 [TGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTG] HWI-EAS406:7:4:1026:1717#0 1 1 76 97114 97189 [TGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCG] HWI-EAS406:7:28:1674:1087#0 1 1 76 97117 97192 [TCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCT] HWI-EAS406:5:15:1212:1925#0 1 1 76 97119 97194 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:5:2:608:141#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:523:1013#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:524:1015#0 1 1 76 97120 97195 [GCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCT] HWI-EAS406:6:2:776:1475#0 1 1 76 97121 97196 [CGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTA] HWI-EAS406:6:90:484:209#0 1 1 76 97125 97200 [GAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGG] HWI-EAS406:7:68:506:1429#0 1 1 76 97128 97203 [CGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCT] HWI-EAS406:5:64:801:1492#0 1 1 76 97133 97208 [GCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTC] HWI-EAS406:7:30:1512:839#0 1 1 76 97134 97209 [CGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAAT] HWI-EAS406:6:82:42:1860#0 1 1 76 97138 97213 [TCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGA] HWI-EAS406:5:21:576:1666#0 1 1 76 97143 97218 [CGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAA] HWI-EAS406:7:67:976:1926#0 1 1 76 97144 97219 [GTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAG] HWI-EAS406:7:72:284:1217#0 1 1 76 97145 97220 [CTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCA] HWI-EAS406:6:90:1324:603#0 1 1 76 97148 97223 [CGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGA] HWI-EAS406:7:55:648:1548#0 1 1 76 97150 97225 [TGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGT] HWI-EAS406:5:68:541:1504#0 1 1 76 97165 97240 [AAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCG] HWI-EAS406:5:33:1462:1304#0 1 1 76 97167 97242 [AACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGC] HWI-EAS406:6:39:296:1568#0 1 1 76 97168 97243 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:4:379:1940#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:23:160:476#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:7:95:818:1496#0 1 1 76 97172 97247 [CGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGG] HWI-EAS406:5:71:1012:1264#0 1 1 76 97173 97248 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:5:47:1098:608#0 1 1 76 97179 97254 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:7:9:1400:1506#0 1 1 76 97179 97254 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:22:853:1626#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:59:731:114#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:7:99:1783:1300#0 1 1 76 97180 97255 [TCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCAC] HWI-EAS406:7:17:1109:924#0 1 1 76 97182 97257 [CCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCC] HWI-EAS406:7:35:510:222#0 1 1 76 97185 97260 [CCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCCA] HWI-EAS406:6:51:1260:1409#0 1 1 76 97186 97261 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/97747-97908] There are [2] sequences in this contig [TGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAGTCCCTAAAACCTGCAAGAAAGTCAGCTACACC] HWI-EAS406:5:85:282:494#0 1 1 76 97747 97822 [ACTACGGCGCCGGGATGTGAGCATTGACGAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGC] HWI-EAS406:6:84:640:795#0 1 1 76 97833 97908 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/98348-98423] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/99899-99974] There are [0] sequences in this contig -------------- next part -------------- A non-text attachment was scrubbed... Name: assembly_test.pl Type: application/x-perl Size: 762 bytes Desc: not available URL: -------------- next part -------------- >AC189398-KBrB056G23 ACTCTCGTGATGATCCACGTTGAAAACAGAGGATGATACTTCGAGAATCTTAGGCACATAGGGATGAGGG TTATGAGTATTGTTATTGCTTTCTCCTCCTCCTTCGTAGTTCCGGCGGCTGAAGAGGCCGTAGGAGACGG CGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGA AAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAAT TTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAGTTGTTTTCTTCGAGCTTCTTGTTGTTTCCACCA TTAGAGAGAAAGTAAGTTGTACTTTAGGTTGGTGATGAAAGATGGTTTGAAAATACGATTAAAAGACCAA AGTTAGTGGAAGTGCTAAGACTTCAAGGTTAAGTTCTGTTTTTTTTTTCTTGGTGTTTAGAAAAAAATAT GAGAAGAAGAAAGAGATTGAAGAGAACAAGATCTGATGTCCAAGTTGATGTGTGAATTCATTCCCAACTT TACTTTTTTGGGTTTCTGATACTATTCTAACGTTATTTTTGATGGTTGACAGCGACTGGAGAATCGCTCT GTGGAACGGAACATCCAAATGTTGATTACATTGAAGGTTTGCAGTTTGTTTTTTTTTTCAAATATGACTT AAAACAAAAAGTGAACCACAAAACTAGCTCATGATTCTTTTTGGAATTTTCATTTGGCATATTCATTTCA AAAGTTTGGATTATTCACGAAAATACTATTATTTTTTCTTCCGAAAATGAGTATTTTACTCTATTATATC ATTTTCATCATGTATTTACAATATTACCATTGCAATCAGTACCAATCCACCATGAACAACCAATTTGAAG CTTTTAATGCACCAAAGTTTCGATTTTTACCCTTCATATCTCATTACTTATGCATACAAATTACATCTCT TTCATTTTTTCTCTATATTCATCAAAAAAACCAAGATTTTGATTCTAAACTTTGTAAAGTTCAAACTCAT AATTCTTGGTCATTAACAAGTGGGTTTGTTTCATGGTGAAATAATATGTGATAGAAGAAGCTAATTAAGT TATCTCGTTGGTTGAAAGTATGAAACTAATTTTTTTCCAGATTTGTTCGTCGGAAGACTTCCGTCTAAGT TTTCTCGTCGTAGAAGACTTATACGGAAATCTTATCTTCAATACATAGGTTAATTTTGCAATTGACTTTA AGTGTGTTTTTAGAGACGGCTTCTTTGGAAGTTAACACCAAAATCTCGAAAATACCAGAGAAGACTTTCT AGAAAGTCGTCTAGGATACACAAGTTAGTTTTGCAATTGACCGGATTATGACAGAATTTTGATGTTCTCT AGATAACTTACACGGAAGTCTTCCCTGTAAGTCTTCCGAACTCTCAGTAGAAGTCTCTTCACTGTCGATG AAAGTCGTCTCAGGTTATTTTTGCAATTGAAAAATAAAACTTAAATATTTAATTTTAATTAGACAAATTC CATGTAAGTCTTTCGGACTTTCGGTGGAAGTCTTCTCACTGTCGGTGAAAGTCATCTCGGTTTATTTTGT AATTGAAAAGTAAAACATTAAATATTTAATTTTAATTAGACAAATTCCATGTAAGTCTTCCGGGAGACGA CTTACACGAAAGTCTTCCAGAAATTTATTCCAAGATTCTGGTCAAACCTTGGTTATCACAGAAGAAATTC TGGTAAATCTTATGCCGGAAGACTTACATCGAAGTCGTCTAATTAAAATTAAATATTTAAGTTTTATTTG TCAATTGCAAAAGACATGAGACGACTTACATAGAAGTCGTCTTGATAAATGTAATCTTTAAGTTTAGTTT TTCTAGTGGAAGACTTCCATGTAAGTCTTCTAGAAAAAAATCAAATTTCTCACATAGTTCGGTCAATTGC AAAACTAACATGTTTATCCTAGAAGACTTATCGGTAAGTCTTCTCTGATATTTTTGAGATTTTTTCAAAA ACAAAAGTAAGCTGATATTTACAAAGGAAGACTTCCAAAGAAGTCTGCTGTAGAGTAGACTTCTATGGAA GTCTTCCTTTGTAAATTTTCAATTTCAAAAATGACCTAAATGGAAGACTTCCTAGAAGTCTTCCGGCAGA CGACTTCTGTGGAAGTCTTCTACGTCAATGTTTCATAAACTTTCATTTTCTCAAAAATTATAAATGCTTT TTAAAATTTTCTTGTTGATTCATGTATATTAATCGATATTAGGGTTGCTGAATAAAATACATAAATTAAT TGATTTTAATTATGAGGTTAGCAACATTCATGTTTATGAATGTTTTTAGCTAGTTCGAGAAGACTCTCAC ATTTTTTTTGTAAACTTATTAAGTAACTTTAAGATATTTTTTTAACTTTCAAAAGTGTCAAGTAACTTCA ATATTATCAAGTTTAATGGTTTAATATATCTTCTTAGATCATAAAATATACTTTTTAATTTTCATGAGAT TTAAAGTTTTAATTTTCACTTAAAATTTCCGCCTAAATTTTAATTTCCCTCTTAAATTTCCTGTTTACAT TTTATTTTTCCGCTTGAAATTTAAGTCTTCTGAGAAGATAAGCTTGAAAACAAAATTTATATGTTTTAGA AGATTCTTTCAGAAGGCTTCCATATTTTCAAATTTTCCCCCATCAAAATAATTTTAATAAAATTTATAAA TTATTTCTAAGATCTAGAGTATGAGAAGACTTCCTAGAAATCTTCTCCGAGAAGACTTATAAAGCCTCCA GAAAACTTCCAGGGGTTATATTCGTAAAAGAACATTCTGTCTATTTTTGTCATAAGGGATACTTGTAATT TCACTAGTTTTTTATGTTACTTTTGCATTTGATTCAAGTTGGGGGTACTCGAAACCTGAAACTTCTAGTA TATATTAAGTATATATGGGTGTTTCATTTTATTTTTGGTATTCTGGGTATTGTTTAAGTTTCAAATTTTA GTTTTTGGGTATGATTTTGGGTTTCAGATAAAAATTTAGATTTTCAAAAATATAATTCGGATAATCAGAT AAAACTTCAGATATTTTTCATGTCCTTGGATCAAATTTTAGAAAACATTTCTCATATTTACTCATATTTA AATATTTTCAGGTATTTTCTGTGTGTATTAGGTTTTTTTTGTTGGACCCGACATGACCCGAACCGAATCC GATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCG ACCCGGATCCGAGAAGACCCGAACCGAGAATTTCAAATTACCCTATCGGGTCTTAAACTCTTAGACCCGA AGGATCCGGACCCACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGA GTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCAACTAGTCGACCTTATTA GTAAGAACATATCTAACCCATCTTTACATTTTTTTTATATTTTCTTCTAAAATAAATAAATTATATTATA GAAGTGGATTTACTTTATTATATGTTTTTATATATAATCTTTGTATTTTAGACAGAAATATAGAAACGAT TTGAAAATGGTCTAAATCTTTTTACCAGAAAAACTTTCCTAACATCTGTGAAGATGAAAATATTAAAATA TTACTTTAGTTAGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAAT TTGGTCTGGACAATTTGGTCTGATACAATTTGGGCTTAAAAAAATAATGTCCATTTGGACTGTTGTGTCC ATTTGGACAACCCATTTGGATTTGGGCAGTTCAATTGACGTCTCTAGCTGTGGACTCACTGGTCGGCTAC ATTTATTATCTCTCAAGCTTTTTCCTTTTACTCTATACTTCAAATTCGAGGAAACATTTCTGCAACTAAT AGAGATGACGTATAGATGAAACCAAGTTTAAGTTAATGTCTGATTTAAAACCATTAGCTTAAACTCATAG CAAAAGATAAAAGAGAAAAAAAAGAAGAAGAGAATTTGCTTAAATCATACGCACAATGTATATAACCATT GCTTTTAACTTGCATGATTGCATCCGAATTTAATTTTATTACAGCCAATGAATGCACAAATAGAACGAGT GATATTCAAATGTTTATTTTTACTTGGTTTCTGTGTCATACACATTATTATAATCCTAAACCATCCCGGT TCTTAACATCCAATACAATGGTTATCTCCCCCCGGTTATTGAAACTAAAAGAGCTTCACTTGCCAGTGTA ACGAGGCTTACGTTTCTCAGCAAACGCAGCTAATCCTTCCAGACGATCTTCAGTGTTTAGAAGCTTCTGA TAACACATATCCTCTAGCTCTAATCCTGAAGCCATATTCGTCTCTATTCCTTCATCAATCGCTTTCTTCG CCATCTTTATCGCCATTGGACCTTTCTCATTTATCTGCTGAGCCACTTCCATTGCTTTCTTATGAGCCTC ACCCGCCGCAACACAAAAGTTAACTAGCCCTACACGACAACAACAACAACAAAAAAGAGAGTATTAATAT AGGAAGACTTGAATTTGAAGACCTTTCCCTTGATGAACCAGAACTAGAGGCTGTTGTGTTTGATGGAGAA GATGAAGATGAGTAAAACAATTGATCTTTGACATTGAACGTTTTTATTTTTAGTTGTGTTGCTTGATATT TAATACTTTGCTGGATTTGTGTGGTTTAAAGTTTACACTTTTAATTTTCAGAATTTTATTTTATATGTGG GTTTATATGATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATA TACGCTTCCAATACGGATCCGCTTCCTAGTTTTTTGAAAAAAATCGTTTCTACGCTTCCATACGATTCCG CTTCCGCGTTTCCGCTTCCGTTTCCATGTAACGTAGGTATTAAGAATCATCCTCTATTTGGTGGGTGTAT ATGTCATAAAAAAACAAGTTCACAATTCAACTTTAATAGTCACAGACCTTTCTTTGCAGCTTCTCTTGCA TCAATCTTTCGACCAGTGAATATAAGTTCCTTTGAAACTGATCTTCCAACCAGCCTTGAGAGTCTCTGTG TCCCACCAGCACTGAATAGAAGCCGAGAGAAAGAAGAAATCATCAGAAGATTGATAAAATGGGGAGTCAT GGATGGAGCTTATAGTATATATATACCCAGGGATTACAGCGAGTCCTGTTTCAGGCAAACCAAATACTGC ATTTTCGCCTGAAATATCGAGCAAGAACTGGAGATTATAGCAGAAAGACTCTAAATAAGAAAAATGATGA CATGTGAAAATAGAATACCGCAGATTCGAAGATCACAGGATAAAGCCATTTCGAGTCCACCTCCTAGTGC CACACCTTCTATTGCAGCAATAGTTGGGATACTCAATGCCTAGAATACACAAGTCACTATTTATACATTC CTCTTCTCTTTTATATAAGTTCGAAGACTAATAAATTTTCCATATCTTGATAAAGTAAAAGTAAGTTTAC AAATGTAGTCGATTTGAAAAAGAGTTTGTTGAATAGGGATTAATACCTCTATGAAGGAGAACATGTAGCG CAAAGAGTTGACATATGTATGAACCTCAGATGGACTCATAGTTCTACGTTCCTGACATGGCAATAAATAA GTAAGAAATAAAACATACAAATTGTTTCAAGCATGGGTGACGAACCCTATTGAATACGAACATTCCAGAA AAACTACCTTGAGATCTGCACCTGCACAGAAAACTCCAGGAACCAGACTTGTGATCATCACAACTCTAGC GGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTT TTGGCCACAGGCCTGTCTAGATTGACCTCGACAATCCCTGTAAATCAATCACAAACTCACATTAAGCACT GCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTA ATCCGACAGTAACAATGCTCAGACATCCAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTC AGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGAAGCAAATAACAC ATCCAACAACGGTATTAACTAACCCTAACAATAGAACCCAAAAATTACCAGAATCGGAACCAGAGAGACG GTTAAGCTTGACAGATTCAGGCAGAGCGGTTTCAATAATGAGAGTCCGGCAGGTTTGAAGCATGAAACTT CGGCTAAGAGATTGTTTTCCGGCTAACTGGAGCAAACTATCACGGCGGAGATACTTAACGAAGCTCATCT TCACCGTCTCTGACTCCAAAGTTTTGATTTTTAGTCCTGTTAGGTTGAAAATGACAGGCTTTACATTCCG GTTGTGTCAGTCCGTAGTGGTCAATGCTTATCCAACCAAGTTCTTTCTTTTTGGTTTGGGTTTCCGGTTC GGTTTTTTAAACTAAATTGAATCCGGTCTGATCCGGTTTGTGTTATTTACCGAGTTTTTCTTCTTACTAT GGAAGGAAGAATACAACAAGAAAAAAAAGAAAAGAGAGTGTTAATAGTACATTGTTTGTTGGTGAAGCCT CCTCCTCCTCCTCCTCAAAAGACTCAGACTTTATGCACCCACGCATCAAGTCGAAGCTGTTTCAATGGCG GTCCTGATTTCCCTTTCTTTCTCTGAGGGCAACTCCATTTTCCTGCAATCTCCTCTCCCCCAGAAAGCTG ATGATTCCACATTTCACCCAAAATTCTTCTCTTCTTCTTCTTCTTCTTTCTTTCTTCATCTTCTTCTGTG GCCATCTTCTTTAGCTTTTTACTTCTCGAGCACTCCCCCAGAACTCCTCTGATTGGTTTCTTCATGGAAC TTTGGTCTCTTGATTCTCTAAATCTTGCCTTCTTCATAGTTACAAATCCAGTTTCAGCGTCAACATTTTC CTTGTCATCTGATTCTTGGTTTACTGACTCCATATTTTCTTCTGGACGAGCCTTTTGAGCAGCTTTTCTT GGAGACATTTGCCTGTTGGAAATGGTTTCTTGGATATGTTTTGGTCTCAGCTCCTGTAATGATTGTGGTT TTGGGTTGTAGCCTTTGGGGATAAAGTTTGCTTCTTCTTTCGTTTCACTGAACAATGGTTCTTGCTTGAA GCTTGAATCTTTGTCCTCTTTTTTGGTTGAAGCATTGAACAATATAACCGTTGACTTCTTTTCCCTTTCT TGGTTTGAATATGCAGAGACCTCCTTGGCCTCCTAACATGTACAAAATTGAGAAAGTGTCAATGGATTTT CAAAGTGATCCCACACAAGTCTCTTTCTTTGAACTACAAGGTTCAAGAAGATAGCCTACCGTGCAGTCAT TTGATTTTAACCAGCCAGGAGCAATAATAGTCTCTTGCTTGCTCTTAGTTTTTCGGAAAATACCAGAACT ATTTTCTCCCTCAGTGTCACTCTCCTCAATGATTAGTTGATCATATTTCTCAGAAGAACAAACTTCAATT TCATGAGTGTCTGAAAGCTGAGGAGATTCATACACATAGCTTGAAAACCAGTTCCCAACATCAGGAGGCT CTGATAAAAGAAATAAGATTGCTAAGAAAACAGAAACAGTAATGACTTATGTACCAAATAAACTAGTTTT TTACCAACCTGAAAGAAGATGCTGAGACTGAGAGAAATCTGCAACCTAACTAGTAGCAAGAAGCATCAGA GAGCTAAGAGAGAAACATAGATTCATATAAGATAATCTAACACTAAGGCATAGGAAGTAGAAAATTATGT ACCTTTGCAGAAGAAGAGACAAGTTGTTGCTCAAACAAACTAGGACAAACATCATCTTTTCCTTCAATGT CTTTAGTCTCTTCTTCTGCTTGCGTCTCCTTTACACATTCACTATCTTCTCCACCAACCGAAAAGCAAAG AGCATCATTTGTATCCAGGACGGGCGGTGATTCATAAGCATAGCTAGAAAACCAATTGCCTATATCAGGA GGTTCTGAGAAGCACACACATAAAAAGTTACAAACATAACCCATCAAAAAAAAAAAAAAAGCTAGAGACT TTCCACGTTCATCCATAAGTTTAACAATCAAAAGGAGTATATACCAGAAAGGAGTGGTGACTCATAGAGA TTATTTGTCTCTTGAATCTGCCACAAAAGTTAAAAACAAAAAAAAAAATTGAATTTTAAAAACAAATCAA AGAAGAGTGAATCGATTGTAACCTGACTCACATTCTTGTTCATAGGTTTATGATCTTTGTCCGCACCAAG AATGTATTTATCTTCCTCTCTAACAGAAAACCCGTTCGGTTCTCTTTCACCGTCGTCCTTGCCTGAAGAA CTCAGTGCAAGAGATTCATAGACGTAACTTGAAAACCAATTCGTAATATCTGGCGGCTCTGTAAATTAAA AAAAAATAAAAAATAAAAAATGTCAACAACAAGACTTGAAAATTGCAATTAGAAGAATTCGCAGCATTCA ATTCAAATAACTCACGGGATATGGTAAATGGAGAATCGGAGTATCCAATAGGTTCCTGCCACACTCAAAC AAAGCTCGATTTCTCCGCTAATTCCCCAGAAATTCAGGAACAAAAATTAGAAAAAAATAAGGATAGAAAT GAATTTCTCACCGCCGCTGAGTGAACTTCTTCCATTAGATTACGACGTCTCTTGCTCTCTTTGCTTTTCT TCCTCACTCAGGATTCTGAGATGTTTATTTTACTTTTTTCCAATTTTTATGATTTCCCGCGCTTCTTTCC TGAGAAGCGGAAAACCAAAATTATGATACTGGGCCTTTTAATATCAATGGGCTCTTTGCTCGCAAACCAA AATTGATCAACACACCTTTCCCAATATCTATATTTGATTTTTTTTTGGTACACGATGAATATAAATTATC TGGAAGCACATAACAGCAGATGTGTTGGTGCTCCGATAAAACCGGTGTGAGCGTTCGAATACACATTTAA ACTAGATTAAACTTGCACGGGATAAATATTATATATTATTTTTATATTATATATTTATAGTATATTATGA AATAATAAATATATATTGAATAATTAAAAAGTCATTATCTACTACTTATATAATTAAATTCGTGCGAACA TATAAATAATTTTGATAAAATCGAGAAAATATTTTTTCTATTTGATATGATATATAATTAAATTTAAATG ATAGTAACATATAGAGAAAAAGACTAGGATAGCACTAAACCAACTTTTTGTTCCCAAAGTAGCACTCAAG GCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATATACACTTATACCCCTTGGGTTAATTAATC CAAACCTTATGGTTTAGAGTTAAGGGGTGGTGTTTTGGAATTAGGGTTTAAAATTTTATAAAAAATAAAT ATTAAAATAAAAAATAAAAATTTTAAAAACTGTTTTAAAAAGTATTTTTAAATTATAAAAAAAAAAATTG AAAAAAAAAATAAAAAAAAATTCGAAAAAATAAAATTTCGAATCTGAAAACATATAATCTGAAACTATAA AAAAATTCTTTTTTTAATTTTTTTAATTTTTTTTAATTTTTTTGTTTATTTATTTAATTTTAAATCAAGG GTATTAGGGATATTTTACCCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAG ACATAAACTTCAAAAGGTGCTATTATTGACAATTGCCCTAACATATATATGATATATTTTAATATTAATA TTTATTAGATGATTTTTTTGCTCATATTTTTTTTTTATCATTTGTATCTGTTATAGCAAAAAGTCTAAAT TAGTGATAACAAAATTTTCACGGTGGGATTAATTGTTTAAGAAATTTATAATATTTTAAAAAATTAAGTT GTCAATATTTGTTCAAATTTTTTATCAAAAAAATGTTCAAAGTAAATTTAAAATTAAGATATTTATGTAT TTTTATATGGCATATAGTTTAATTTAAAATGATACATATATTTAAATATCTTTTATTTTTGATACTTATT AAATGAGACATTCAACTTCTATTATTTTTAATTATTTGTATCATGTCATCACAAAAGTTTTAAATCATAG TTCACAAAATTTAAATGTGAAACTTTTAACACTTTTAGTAATTTATACTCGTTTTTAAAATTTCAAAATA TAATATATAAATAATTTTTTTTAATTTTTATTATATGGTTACTATGATGAGAAAAAGACTAGGATAGCAC CAAACCAAGTTTTTGTTCCCAAATTAGCACTCAAGGCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGA TAAATATACACTTATACCCTTGGGTTAATTAATCTAAACCTTAGGGTTTAGAGTTAAGGGGTGAGGTTTT GGAATTAGGGTTTAAAATTTTATAAAAAATAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTC AAAAAGTATTTTTAAATTATAAAAAAAAAATATGAAAAAAAAAATTTGAAAAATAAATTTTAAAAAAAAA ATTTCAAAAAAACAATTATAAAAATTTTTAATCTGAAAACATATAATCTGAAACTAAGAAAAAATTTCTT TTTTTTATTTTTATTTTATTTATTTTTGTTTATTTATTTAATTTTAAACAAAGGGTATTAGAGATATTTT ACCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAATG TGCTATTATTGACAATTGCCCTACTATGATTGTTTAATTGATTTTAATAGCTTAAAATTAAAAAAAAAAT ATAATAATAATACGCTCATATTTTTATCAAATATTTATTCTTCAAAATCATTAATTGTCATATATACTTT AGCCACAATAGGTAATTCCGTAATCTTATTTAAAGAAATAATGAAGCACATTAATAATGTATTTATTATG GTTTAATAAAAAGCTTATTATATATTTAGATGAACTAACATATTTCTCTAAGGATTCTAAGAATCATTCT AGTGATGACACGTGACTACAAAAAAGTGTTGCAATGCTTCTCAAATAATATATAGGGGATATACATTCAC GTTCGGTTTGAGTATTTCAGATTTTCAGGTATTTTGTGTCGAGTTCGGTTCGGTTGGATTTAACTTTTTG TATTTTTAAAACAAATTTATGAATAAAAAAATATGAATCAAATAGTAAATATATGTTGTAAGATAGAACA ATAGATATTTAAGCAAACAATAATAAAATAGGTTGTTAACCAAAAAACGACATAGTATATATGACCGAAG CAAACTGACCCATCTAGGGTCCAACAAAAAAATCTGAATCCGAAAAAACCGAACCGATCCAAAAAAAATA ATACTGAATCTGAACATAAATATTTTGGATATCTGTATGTATCCAAAAAAGATTTATATACCTAGATGTA TTAATTATTTTTAGATTTTATAAATTAAAAAATCTAAAATTTGAAGGATATTTTGAAATTGTTAAAAATA CCTGAAAATATATACAAATATCCCCTATATATTAATAGAGAAACATTTAAAAATTTATAACTTGCAGTTT GTACTAATCAAAAAAGTATCATGCTGAGTTGTCAAGTAATTGTAATGCTAATTTTGCTTACGTGGCGGCT TGAGAATCAATTGAGAATTTTGTTAGTCCAAAATTAAATTGCTAGAGAATCTTATATTATATAGTATGTC AATTATGGACCATTCATTTATGAAATTGAAATTGTTATATTTTATTTCATTAACTAAAACCGACGGAATT ACCTAATGTGATTAAGATATATATGATAATTAATGATTTTAAATAATAAAGATTTGCTAAAAATCAGTAT ACTTTATATCATTTATGTTTAATTATTTATTATTAAAATAAATTACACTATTACATTAATCATATAATAA AAGTTAGATTTTTTTTTTCTATATGTTGTATTTTGAATTTTTCAAAACGAGTATACATTACTAAAACTGT TATAAGTCTCATATAAACTTTTGTGATCAAGGTTTAAATTTTTATTATATAATAACATACAATGATTATA AAATCATATGAATAACTAATTTTAATAATTTTATTTTAATAGGTAGTTTATGTTAATATATATATATATA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCATATCGTTTA AGTTAAACTATACATCATATGAATATACATACTTATATTTTGATATGTGTTGAACATATATAAAAAGTTA ATATTTTAATTTTGACATCTTCATTGTTTCTTTTAAATGATTTTAAATTATTGAAACCACTAAACATTCC ACAGTAAAAAATCTCATTAGTGTATAATTTTGTTACAAAAATATGCAAATAATCATAAAATCATATGAGT AGAAACCTCATTTAATAAATATCCATATTAAAGTATATTATATCTATGTTAAAATATCATTTAAATTTAA TTATATATCATATACGATAGATATTGATTATTTTTATTTATTTACCTTAAAATGATTGCGAATAAACAAA AGCGGTCGTTTGATTTATATGTGCACGCCAATTTATTACATAATAGTAACTGATTTCTTAGTTATTTAAT ATAATTATTATTTTATTATTTCAAAATATGCAGAAAACCATAAAATAAGTAATAAATATTTATACTGCAC AAGGCGCGGATCTTGATCTAAGTATGTATCTCTTTAATAATTTTAAATCTTAAACATTTTCTAAATCTCA GGCCAAAACCAAAATAATTAAATGAGAATAAACTCAAAAATCAATATTTATATCGAGCAATAACCAAAAA AAAAAAAAAACGACACAAAATATGAAAAATATTGAAGATAGATAGGATTGTCACGTGAATGTAAACTTTT CATAACTATAATTAACTTTTAAGTTGCTAAATCATGATATAAAATCGAAATGACATAGTTTCATTGTAAA ATTTTTAGTCCCAAAAATCCGAATAGACCGGAACCGGCTACAGTTTGGTTTCCCGAACCAATTCAAATTT GAACAATATAATGGTCATTTAATATAAATAAAATAAAAAGAAACAATTAGTTATATCTCTTATTTATCTG GGAAAATCTCCCATATTTTAGTCTTAAATTATTACTGATAAAATTTAGCAGAATCTATTTTTTAACTGTA GTTTGCGATGAGCATGCTCAACTGGCAAAAAAAAAAAAAAATTACCTATCCGAATTATCATTCTTCCTAC TAAACTTAAATTTAATAGATTGGAGTCAGTTGATGACAAAAAAAAATGAAATCAGTTTGCAGACTAATAA AACAGATGAAGGTTGCAGCCGGGTTCTTTTAAGTCAGGAAAATCTTCCTATCACTTGGCTTTGCTGTTAT TGACATCGTCGTCAACATCCATGGCGTTACTGTTAATGTCGATGCCAACGTCCGCACTCATGTTCTTGTT CTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTACA AGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTTTATGGTTTATCACACAA CCAAACACAAATGCTTGTTATTGTGTATAATTACGAGATGAATTTACCAGAAGAGTGGTGAGGAATGAAG CAACTCTTCCTTGTGAAACTTGGAAAAAGCTTCACATGCCCATGGTATATGACCATCCGCCACAACCCTG TAACCAAAAACTCATTAATTTTACAAAATGTTCCATCATTCAGACATGCTACTGGTGGATATTACCAGAT CAATTATTCTTATAGTTGGCATAAATGTCGCATTAAACTTGTAAGAAAAGTAGTTTACCTTTGTTTTCTT ACAAAAGAGTTCCAAAGATGCATGAATCTCTTTTCGTTCTTATTCACATCCACGAAATCATCAAGCATCT GCAGCTTTGTTTTAAGTATTTCATAATCCATTTACCACGTTACATCAATATACCATGTATTAATGAACGC AGAAAGAAATCATGGTAATACCTGGCGATCTTCCAGATCTGCAACGTCATCATCCACTTCATCTTCGCTA TCTCGATCAGACATTACTTGCTCAAGTGACATTGGCTTTATCACACAAACCCATGTAGTTTTTTTTGGTT AGTGACAGTAAAACCGTGACAACAACATGGAGATAGCATTATTAAGTCTGTTAAAGAGCTTATTGAATCA CCTGAACTCTGTGAGAATGATAGAACTGGCGTTTCTGAAGAAGTAGGTTGCTGGAAGAAAAAATTCTCGA GTCAATACGGAAGTAGAGTTCATAATAAGGAAGAACAATTTGGAACAAGATAACAAACCTTCTAGCCTCT GATCGCTCAGCAGATAACTTTCTTGACTTAGCAGCCGAGACCACAGCTTCGCTTGCTAACACAGCTTTGG CATTCGAGTCCAGCGAACATTGAGCTATGGCTGGTGAAGAATTGTTCATCCCAAATTGTGTTGCCACGGG ATATCCTAAACTATGGTTTCCTGTAGAATGCCATTCATTTATGTACATAAGTCATGGTAAATATTTTGAA AAGAATCAGAGGACAAGTACATTAACAGAATAATCAAGACACCCACATGAGAAGAAGAGAGTTTACCATT ACTCAGTAGGGAGGTTCCATTATCAGTGCCATTGGCTAAACTAGGTGAATCCATGGGTAAAAAGGTTACG TTTAGTCGCCTGGCGTTATTTTTACCACCTCTTTGTCTACGCTTACGAGGTTTCGAGCTGCAGAACATTA TTGGTTGGGGTTAGTTAATAGAGATGTTCTGACAAGGAGTTGCTGCTATTATTAATGTATATATATTTAA CTTATTAAGGTAGGCTTGTGAAAGTTACCAAAAAGAGATAAGCTCATATTTCTCTTGATGGTTGACTTCT TCCTGGTACAAAGAAGGAATGAATATCAACTACAATTTCTACCAGCTCCCAAGTTAACCAAGTTTAAAGT AACTGACCTCTGATTCGAATGCATCAAGTCTTACAGAGACATTAACTGTCTGGTAATCATCTTCTGAAAG CTACAATAGGAAAAGATGTTTGTTGTAACTAGAATTTCATAGCAAAACAAGAGAGTTGGAATAAAAAAAA ACAACATACCATGAACTCAAATTCAAACAAGTCATGGAACGAATTCAAATGAAGTTGCAGCCCCTGCGCA GACAAAATAACAATGGACTGTAAGCTCAATCAATCAGATAACCATTTATAGAGAGCGAGAAGATAAAGGA AACACATACCTTGAAGCTAACACATGTCATATAGCAAAATGGACAAGAACAATTCTCCGTCACTGCGTGA AAAAATTCAGGAAATAAAAACAAAAGTAGAGAGAAATAGACATGAGAGAACATAATAAAACACACACACA CACACACCTTCAGTTTTCTGCAATGTGTTATTACAATCCTTATAATTAAAAACTACAATCCCAGCAGATC CGGACCTAAAGAGAAGAAGCCATTCATGAGTTTCCATAATTAGACCCGAGAAAAGGAGGATTAAAGAATC ATTACTTTGTTTTGCCCTTTGCACGAATATTGTAACTCAAGCATCTAGGAAGAAACGATGGCTGCACAAA GAAAGAAACAAAAGTTAAAGAGGATCACAGTCAAGCCATGAAGCAGTATCATCAGCAGAGCTAAAAGAAA ATGATTTACGTTGAAAAGGGAGCGAATGCGAAGAATGTTGTAGAGACGAACAGGTTTACAGTAGATCAAG AGATTCTCATCAGGTGGTGAAACCACCTCCTCCTCTTGTGACGATTTCGCGCAACAATTATGCCTACACA TTCTCTCTCCTCTACTCAATTAGCTGCTAGATCTCTTAATCTTCTGCAATTAGGATTATTAATTGAAATC AAAATTAAACAGATCCGGAGTTGAACCTAAAAAGAAGAAAGTGAAATCAAGAGCTGAATTAGCTAACATG GGAAGCTCTGGAACCTGATCGGAGAGGCTCGATGTGCCGGAGAAGAAGGAGAGAGGATGAGGCGTAGATG CAAGCCACTGAGTCATCGCCACGCCATCTTCTCTTTCTCCTTTTCTACTTTCTTTTCCTTTTTTTATTTA TTTATTTTGCTAATTTTTGTTTCTTTTGTAAGCAATTATATAATTTACATTTAAAAAAAAAAACTGAAAT CTAACGCTTTACAATAATAAAAGTTGAAAACATGATAAACAACAACATTTGAAAGTTGAAATCCAAAGGG CAGTTTCGTTTTGAGAGGTGTTACATTATTAATTGATTGTTATTATTCACCAAAACAACTCCCAGTTCAC ATAAATATATGTTCACAACTAGCCTATTTCTCTGATAAACAACACTTTTAGACAATCATAAAAGATGTTC TTAAATTCTCGTACGTAATTAGTTAACTTTAAACTGAACATCAGAATAACAAATATCATAAATTATGGTA CATAATTAGTTAACTTAAATTGATTAATACTTTCAATTAGACAATCCATATAGAAGATATATATATATAT ATATATATATATACATATAGAAGATATATATATATATATAGAAAAATTAAATCTGAAATTTAAATGAGTG AATTCGAAACATACTGTATTAATAAGATGATAATAATGAAAGAGAAAAAGACTAAAATAGCACTAAACCA AGTTTATGTTCCCAAAGTAGCACTCAAAGCTTAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATAT ACACTTATACCCCTTGGGTTAATTAATCCAAACATTAGGGTTTAGAGTTAAGTGATGGGTTTTTGGAATT AGGGTTTAAAATTTTATAAAAAAAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTCAAAAAGT ATTTTTAAATATAAAAAGAAAATTTGAAAAAAAAAATTAAAAAAAAAAAATTTTGAAAAAAAAAATTATA AAAATTTCGAATCTGAAAACATATAATCTGAAACTATAAAAAAAAATTCTTTTTTTCATTTTTTTATTTT TATTTTATTTATTTTTATTTATTTTTGTTTGTTTATTTAATTTTAAACCAAGGGTATTATGGATATTTTA CCCTTTAATGAATGTTATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAAGG TGCTATTATTGACAATTGCCCATATTGAAAACGATAAAACATTCAAAAGAATGTATATGAAGAAAAACTA AACTCTAATCTAAACCCTAAATTAGAATAAGGAAGTACAAACATATTTAAACGATAAACCAATAGCAAAA ATTTAGTGAATCCAAACTGATTAAAGTACAATAGGAGGGGTCCACAAAAATGATAGGACTAAATTAGCTA ACACTGAGAAGCTGTTGGGCTTTAATAAGATTTGCTGGGCTTTAGCTTTTTATCACCTGTAAATAAAAGA AAAGTTAGTAAAAGACTGAACTATCTCTGCTCAGCCGCCACTGCAAAAAAAAATGCCACCTATTATTATC TTCTCATTCATTACATTTCTCTCACCAACTTAAGTTCCTGTCCTAAATACCATTTGGTCTTTTTTTTCTT TTACTCCTCTAGATCTGTACTGTCCGTTGATTCATCATGGCTTCACATAATTACTAGTTCTGTTCTGTCT GTGTGATAATTTTGGTAAGGAAAGAAAAAACGAGGGCTGTAATCAATTCGATTGATTTGAAGATATGGCA ACTTTGAACCCTTTTGATCTGTTGGGTGACGACGCAGAGGATCCGAGCCAGATCGCCGTCTCCATCTCTG CTGATAAGCCCAAGAAACCTGCACCTGTTTCCGCTAAGTCATCTGCTCCGTCGAGGCAGCTTCCTCAACC TGGTGAGATTCGCTTCACACGATTAGCAAGTTATTAAACTTTCGTCTCTATTTGATTCCATCCGTGGTAT CTGATTGTTGTTTTTTAAATGATGTTGATTAGTGAGGGAGGCTAGGAGTGATGCTCCACGCGGCGGTGGA CGTGGTGGTGGTGGAGACCGAGGATCTAGCCGTGGTCGTGGTGGTTACAACCGTGATTTTAGAGGCGGTG ATGGTAACAGTGGAGGATACAATAAGCCCTCTGAGGAAGGAGGGGTTTCAAAGCCTTTCTTTGAGAAACG TAGTGTATATGGCGGTGCTCCTCGTGGTGGTGGTCGACGTGGTGAAGCTGGTGAAGGTGAACGTCCTCGA AGGACATTCGAGCGTCGTAGTGGAACTGGCCGAGGGTCTGTCCTAACCTCAGTCAGTTTTTGTTGTTGTT GTTGATACATTAGTCTCTTTTAAGGTTAAGCTTTATGTTTTTTGGTGAAGGGGTGACTTCAAAAGGGAAG GAGCTGGTCGTGGAAATTGGGGAACACCAGGAGAAGAAGTTCTTGTTGTGTAAGCATTTCTGATGTTTTA TTATGATAGTAGTGCTTGTGAATTTGGAATAAAAAAAAGAAGCTATTTGTCTCTTATAGGGAGACTGAAG AAGTTGCTGGTGCTGAGATTGAGAAGCCTGCTGGTGATGAGGTTGTTGCTGATGCTAAGAAGGAGAACGC TGCTGAAGTCGAGGAGCAGAAAGAGCCTGAAGATAAGGTAAGCAGAGGAATTAAGAGAGATGTTAAGTTG CTATAATAGGACATGGAACTGAACTTACACTTGTCGCTTTTTTTTTTTTTTTTTTTTTAAATTCTCATTA TTATGGCTTGTGCTTCTGTAGGAGATGACTCTGGATGAGTATGAGAAAATACTCGAGGAAAAGAAAAAGT CTCTTCAGTCTCAGACCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATCAATGCAACAACTCTC AAACAAGAAGAAGTCTAACGATGAAATCTTCATCAAGCTGGTAAGACATATTACCTCCCTGTCTTGTCGA CTAGAAACACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAAC GCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGTAGAA GCCTAATAAGTTTACCTATGGATGTGTTCTATGTTTTGCAGGCTGTGAGCATTAATGAGTTTCTGAAACC AGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGAAGGGGACGTGGTGGTCGT GACCGTGGAGTTGTTTCTGGTGGTGGATTTGATGGTTACCGTAGTGAAGCTGCGCCTGCCATCGGAGATA CTGCTCAGTTCCCATCTCTTGGGGGAAAGTAAGATCCAACCTTGGACACTCCTGCTGTCTCCTTCAGTTT TCCTCATCATGACTGAAGTGTTTCATGCTGAGTGTTTGCTGGTCTGTTGTTGTCAGGTGTAAATTGTTAG TTGTTGTCAGTTTTTAGAGTTTCTGAAAACTTATGCCTGACCGGTCTTTTTTTTTTAACGTTTGGAACAA TAATACCCTTTTCTATTTTGGTTTTACCACTTAGTCTTTATAGTTGTTTGTGAAAAGACAGACAGTTCTA ATGTTATATGCTTTGGGTCTTCTTTGGGTTCACTCTATTTGCTCTTACATATGTTACAAGATCTATAATA CTTTGATCTCTTGGAATGCCATGATCTCTGGTTACGGGAATTTGGAAATGGCATCAGGTTTCTTCCAAAC GGCTCTGGTTAGAGGCGTCCGTGGGTCGGTGATTATCACAAGGTACATGAAAGGAAATAAGGTTAAATTA GCTGAAGTCTTCAAAGACAAATCTGGTAACTTGGAATGCATCAGTTATGTCTGAAATTTTCTCGGCCAGA AGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAG TGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAACAATATAAA ACTTTGTCAGATCAGTATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTC AAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTGACGGAAGTGCTAGTAGCCTTCCGCTGC TCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAGAGTTGAAAACAC TTTTCTTTCTTTAAAAGAAAAAAAGAAGAAGAAGAAGATAGATAGTGTGGCCTATGATATGGATCTTTGT TACGGTTTTACTGGACTGTAACCATGCTGGACTAGTGTTCAAAAACCTGATAAATTAATCTAATAGTGAT TGCCATATAGTAATCAATTGTATCACGATCAGAGAAAGAGAGACGAGAGATCATAGTGAAAGACACCACA TGGTTTCACCATTTCATAGATGGGTGTTGCTCTTGTGTCGGTTACTTGTTATTATTAAAAAAAAAAAAGG AGAAGAGCGTTGACTCTCTACTGGACAAATCTGACGTGACGAGACGAGAGTATTTAAATGCGTTCATGTG CGTTAAAAAGTTTCGACACTTTTGACTTGACAAGTTGCGTTTAAGGAGAGGAAGATGCGTAGATCCGCGA GTGGCTCAAGAGTTTCAGATCAATTTTCCCAGGCGAAGCCGTCACACTCACGGTCTATGAGTCGATCTCA GAGTGTTAGACTTGTTGAAGATGCCGAGCTGCATTTGCCAAGGTACGACCCGAGCTCTCAATCGGGTAAG AGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCT GTGTTATAATCCTCTGGCTCTTCTCTCGTTCAGGTAAACCATTCGTGCTTGGTTTAATTGGTTCGATGTG ATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCTTTTAAGGAGTCGA GGTTGAAGAAGCTAAAGGCTGTTACTTGTTTCCTTTGGGAAAGAACCAACTTTTTACTGCCAGGACTGGC GCCACGCAAATGTTTTTTTCCTTTCTTTTTTTGAATTTTGTTTTTTCTTTTCGACAAACCAGCCTTCATT TATATAACATTATTTTGTTATAAATGTGAAATTTCACTATGTAATACTATTTCTACGTCAATACTCAAAT ATTGTAAGACATACAAACTCATTTTCAGCGAATCACTAATCTAAAGTTTGTATGTCTTACAATTTTTTAT TAATTGAGCATTTCATAAAATTGTTATATGGATTCGTGTTTTAATTAAATTAAATTAAATCAAAGAGAAT AAAGTTTTTTATTATCTTATGATTCCCTATGCTATAAGACACACTTTCTGTAGAACACCTCCACTAAAAG GTTTTTAACCAAAGTATCTCAGAAAAATATCTATAGAAAAAATGACTGAGATACAGGTTCTGCATAAAGA ATTTCCAAAATCTTTTTAGAAACCCACAAAACAAATGTTACTTTCTTTTAAATACTTTAAATTTAACTAG TTAATAAAATAAAATTTAAAATAATAGTACTTTGTTATTTAGATACTCATATTGAGTATACTCAAATAAT AGTACTTTATTAGAGATGGGTAAACAAGCCGAACTTGAAAACCCGAACAGAATTCGATCCTATAAAAAAT GAATCCGAACTGATTCGAACCCGACATAAATATCAAATATATCTTGTTTTATGGTATTTCGGATTATGGG TGTTATCCAAACCGAACCCGAATACCCGATAAAACCCGAAACATTCAAAATCCCAAAAAAAAACTTGTAC CAAACATGATTTCAATTCATAATATGTATCTAAGTACACTCAAATATTATTGAACATCTAAAATAATTAT ATATTACATGAAAGTTGATGGCTGAAGGTGATGGTTAAAGTTTGAAGATTTTTTAGACTTTGTTTTTATC ATAACTTGGTTTTCGTTTTATGCTAACCCAACCCGAATCTGAACCGGTTCGAACCAAAATTTTGTATAAT CCGAATGAAACTAATTTTGATATATCCAAAAAATTGAGATTCTATTGGATAAAACCGAAATCTGATTGGG ACCCAGTTATAGGTTGTGCCATTGGGGTTGTTCTTTAATAAAGAAAAATATTATGATTTTTTTTTTGTCA ACCGAAAACTATTATGATTAATATAATACGTTTGGGGTAAAAGAAAAAAATAAATAAATAATATTTCAAT TTGGTGACCAAAAAGGAAATAAATTGGGATCTAAATCAAATCCAGCAAAGAGTTACTACTTACATATAAA GTGGTTAAACTTGAAATCTATCCTTCCAAGAAATCTTCCAGGTTTGTCTGGAATCTTAGATTAGATCGTA ATCAAGTCAACCGTATTGATAAACCTGTGATTTAATCTGACAAGAAAGCACCAATTCCTACTCATATTAG ATTTCAGAGTTCAAACAAATATCGACTCAGTTTTGAAGACAATCATGGCTGAAGTAAAGCGACCTGGTTT CTTCTTCTTCTCACACCAGGGCCTAAACCCATCTCTGAAGTCATCTTTTGCTTCAGTGAAGTCCTCGTGG ATGCGAGTAACATTAACTTCCATTGTTGTCTACGGTCTCCTCTTCCTCTACTCACCAGTTCCCATGTTTA TTTCTATCAGCTCTCTTCGGTTACACACCTACACTGCGTCACCTCATCAGAGTTCTCTGTCTCGGCATTG AGATCGTATACATAATGGCTATAACAGGGCTTGGCCTTGTCGTCTCTGTAGTAGAAGAAAGATACGGTTA AAGAAGGAGCGGCTCTGATGAAAGGGAGGAGGATAACAGGATTGGCTTGAGAGATGTCAATCAAAGTCCC ACATTGGATAATTAGACAAGGAGTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTT TGGGAAGGAAACCAAAAGTAAATCCATGCGGGCTAGCCTCCTAGGCCCAAAGTGGACAATATCGTACTAA TAAGATAAGATAGAGTTGGACACGGGATTTCGCAATCCCAACAATTGGTATCAGAGCGGTTGACGAGAAA TCTGCAAGAAGACCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAG AAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTA AGGGTGTCGAATGTCGAAGATGCGACAAGGCACCGAGATGATTCGCTAGAGGAAAAAGGGCACAAGGTGT GTGGTCCTTAGCTTGAGGGGGAGAATGAGAGATGTCAATCAAAGTCCCACATTGGATAATTAGACAAGGA GTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTTTGGGAAGGAAACCAAAAGTAAA TCCATGCGGGCCAGCCTCTAAGGCCCAAAGTGGACAATATCGTACTAATAAGATAAGATAGAGTTGGACA CGGGATTTCACAATCCCAACATGGCTTTGGCGGGTGTGTTGGTGTTTCTGTCGAGTTTCATTGGTCATGG GATGGAGAAGCTGGCGAAGGAGACTGGTTTGATAACAAGGAGAAAGTGGAAGGTTCAACGATGCTCCTTT GCCATGAAAGTTGCTAGAAGAAACTGATGACGACGGTATCTTCCTACTTCTAAAAGAACCCTGTGCAGAA GCTTCTCCCTCCCCTAATGAAAGATCCAGACCTGGAGCCGTCAATTATGCGTTTTCTTCTGTTCTTTGGC TACAGAGTAAGTGGGAAGATTCTTCAGATGTTCTTACTGTCATCTGCATTAAAAATGAAAAGATCGAAAA AGGAATAAAGGGGTAGCTTTGTAATTTACTGATCAGTTTAAACTTAAGCTTACCCGCATTCGCCTCTTGC TTCTCTCAGTCGCTTCATCACATCTCCATTGTTTTCACTTTCAGCTCCACCTGGTGATGGAGAGAGATTC AAGACTCTTACACCACATCCTTTTATCCTCTCCAGAGACAAGGGACAAGTTTGCGTGTACCGTTCAAGCC AGGCCCAAATCTCACGCAAGAACAGGCATAGTTATGGAGGAAAAACTCAAACTCCACATGGTTGTAGCCT AGTTTAGATGGAGGACTATAGACTTCTCCTAGCGGGAACCCGAAGTGGAACATAACCAGATGATCCATCT TACATGAGTCCACGTCAAGGTAGAAATAATGCACGCCGCTTTTGCCTCCGACGTACCAGCGCACCCCGAT GTTTACAGAACGATCCTTGGGGTCAGTTGGGGGTTCAAGAATGATGCAAGCCTTGAATCCCCAAATCTTT TGAGAAAGAGAGCTCTGAGGTAAAGAGATAACTAGGTTACTTCCACCAGCTCGATGCATGAAATATGTTG GCACTTCTCTACCGGGTGAGATGGCATAGTCGAAATCTGATTGCAGAATGAGTTCCCGCGCATTTTCATC CATATTGAAGCAGTTATAGAATTCAAGACGACTCATTGGATTGACGAAGGGGTGAGATAAAACCCGGAGA GATTCACAATTCTTTGCACAAGCTTACTACCTGGGATTATGAGTTCAACGAGATATTCTGCGCAGAAATC AGAAGGCATATATCTCATAGGACAGTCACTCCAAACAAGTTCAGTGAGCCTAGAAATAATGCCAATGAAG AAACAGTCTTCGTCTTCTACTATGGAAGTTCCACCTAGTAAGAGCCTTGAAATGTTACTTGAAATCCGAG GGAAACTTCTCAACCTTGCGCATCCAGTGAGATTAAGATAGTGGAGAGATGCCAAGTTGACATCTGACGG AAGAAACTCGAGTCTTATACATCCACTCATGCGCAACACCTTGATTTCATTTAGATTACGAATTCATGAG GATGGAAGAAAAACCAAGCTTTTGCAATCGTTGAGTTCCAATCTCTGGAGTTTGGTGGCCTCTGAAAGAT CTGGAATTTCTTTCAGGTTTTCGCATCCTGACAAATCCATATACACTAGATCTTTAAGCAGCTGGAAACA GAAATGAAAGATGCATTAGTTGATGTTGAATGTGAAGAAAAAAAGGGAAATATATGAATGAAGTAGTTTT AGTAATCTCAACCCAAGCCAATCCTAGGTAGAGTCTTTCGTAAATCTTCCCATTTATATTCGCTTAGCCT AAGCCTAACCACCCCATCAAACTTTATTGGGAATTTGTGACACTAGCCAATCAGGAGATGCAATAGCAAC ATGAAAAAAGACCAATAGTTCCTCCTCCTATGCACAAAAACATTAGTAATGAAGATTAAGAGACCGTTAC CTGTTTGCTCAAAAACAAAAACAAAAACAAAAACAAAAAAGAGACCGTTACCTGAATTCCTTCCCACAAC ACCTTTGCCAATTTCGTCGGTCCCATCGTAATCTCTCGCTTCTCTCCCCTTGTAACCTAAGATATTTTAA AAATCTATCAAATAAGAAAAGTTTAGGTTAATGTAACTAATAAAAAGCCATATTTCATATTATCTTCTTC ACTGCAAGTAAATTCAGGAATCAGACAAATGCTAATCAACTCATTCTCAAGCAGAACATACTTAAAACTT CACTTCGATTGATTAAATATTCACTCTTCATATCAAGGGACCAAAAAAGCTAACGCAAAAGCAGGTATAA GACTAACCTAGACTCAAATCACCGATCTCATCAAGTGTTATTTAAATTATTTTGTTATTTAAATTAATTT TGTCATATGAGAAAATTGCTTGATATAAAAATAGATTTATTAATTTAAAATTTATATTATTGTATTTAAG ATAATTATTAATCAGCATTCTATGAACTTTCCCTTTTTTATAAATCATATTATGTATAATGTATAATTTG TTTTTAAATTTAATAATTGTTTCCTATAATAAATGTTTATATATATGTTATTTGAAAAGAATATAAAGAA ATAAGGTTTAATAATGACGATTAGATATAATATTTTGAAGTAATTGTGAGTACCATTATAATTAACCGTC ATAAAAATTAAAATGATATGGAGAAGTACGAAAAACCAGAAAATAAATTAATCCATAATTGAAAAACCGT ATGCCCAAACCTAGATATTCTGATTAGTGATTACAATAAGATATCAAACTTAATTCAAGTGTTGTCCTAT CCTTACTTCACCTAATTTTATAGACTTATAATGAGTTAGGATTTAAGAGAATACATTTGATCAAGCATTC AAGTGTAATAACGGTCGCAATTCATGAATCGACTAAATGTACAAGCTTCGTCGATTAAAATTCAAATCAC TTTTATGCAAATATGAGATGATCGAGAGTATATATGGAACATGTGCGTTGTTGTGATGGTCTAATGTAAG AAGATGGTTAAATAGTAAATGAGGGCCACAGAGTACTGGTGTGAGACAAAGAAAATAGTATGGGGACAAC CATAAATGGCGGTTTGTGAGTGCGAACATAATATTTGGCCGTGGAGTTTATTAAGATGCGTTACCTAATA CAACACGTATGGTCCCTTTTTGTTGTTTGTTTTGTAACCTAGCATTATGGTATTTTATCCTTTTCTACTA GATTTTTGTAATGGCCAGATCCAGATGGCTGATTCATTAATTTTGGAAGACTCAAATGACTTGTGTTTTT TTTTTTTTAACTCAAATGACTCGTTTAGTGACTTTCTAATTAGTTAGTGCTGTTCTTGTGTTTTTCTTTC ATTCGTATGCGGTATGACGTTAAATATTATTTCTGATATATCATTCACCCTTAAATTATACTAAATCAAA CATATTTCACTTTAGAAATTTTTTAACTGATTAAAACGATAAATGCATTTTAATGATATTATATATAGAC AAATCGTTTTGTAAAGCTCTCTACATGCTCCACTCCACCATTTTCGTATTATGATATTATAGGATATATA TATATATAATTATATATATATTGACTTGACTTGGTTATAATATAGTCTAACCCAAAATATATATATATGA ACATCGTTCTACTATATTAATGGCTAACAAACATCATTAATGTCCTTGCTAATAATTTTGATGGTCCCTT AAAACCAACCCGTGAATCGGATTGAATCAAAAATATAAAGAATCAAAATAAAAGACACCATAACAATAAT AACCCCGTTTCCATGTCTATTGATTATTCTACCTGTACTTACAAAGAGATATGTGGAGGAAAATAAATCA GCATCTCATGCCTATCCATCGACTGATACGTTTCACACTATATATCCAACGGTCAAAATTTTTAAAACAA ATAAACTCTAATATATATATATATATATATCCCCAATAGCACAAAGAACCTTCACTTTTCTCTCCCATTC TTTTACAACTCACATTGCACATCCTTTTTCTCTATATATTACTTAACATAAACCACTATTCACAACACAA ATACACACATAACCATGGCCTCTTCACAAGCTTTCCTTTTGCTCACATTGTCTATGGTTTTAGTTCATTT CTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGCGGC TCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACCACCTATGCCAATGATGGCTC CACCACCTATGGCTATGGCTCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCC AATGGCTCCATCTTCAAGTCCAATGAGCCCACCAACTACTATGGCCCCAAGTCCAGAAACAGTCCCTGAT ATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGG CCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCA TTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAGCGTCGTGTTTGTGTAATTTACTTTCATTTTTTC TCGAGCCATTAGTTTTCATGTTTTATCATATATTTGGGTTTGTGTTTGATATGGTACGATTCAGACATTT GTTTGCTTAATAAGTTTATCGTTGACTCTATTTGATGCATGTGATGTAAATTCATTTTTATCCAAATTTT CACAGACGAACTATCAATAACCAGTATTATCAATATATATCTCGTTGTTAGTTGGATGATATCAAATTAT CAATGCATATGGTGGTTCACAAGAAAAGGAAAAAAAAGAGATAAATGTGTATATATTTAACAAGCTTGAG GTAACTATTTGTAGCAAATAAAATAAAATACGTTAGTGAGAAATGTTATCTTTCTAGAACGAATACGAAT AAAGCAAAAAGCTAAAATTGCAAGCTGTGTGTCATAAGAATCGCATATGTAAAGAAAAAGAGGTCGCCAT CTTGGATTTTTCTATAGAATAAATTATTTTTAATTCTGTGTAGGTTACATTTATTTTAAAAAATAAAAAA TAAAAAAAACATTTATTTTTTTTATTTTTTTGAGCAAGGTTACATTTATTTTATTTCATGGAATAATACA TGTACAAGATTTGAATTTGTAAGAAAATTAAGAAAATTCAAAAAAAGAATGGGAAGAATATGAAAGAGGT AGTGAATAACAATTGTAGGGAATAGGGATAAAGCAGGACTCGAGAGGACAGCTAAAAAGAAAGAGACGTT CACATGACTGTCTTTTTCATTTGCCCCCACCATTTTCCAATGTGTATTATTAGAAATCATAACGCAGTTT AATTGTCTTTAAGTCATGTTAGTTATTTATCTAAAGCCATGTGGTGCATAGGTGCTATGTTTAAATCATT TTTTGAATGAATGTTAACTTTATTCATCAAAAAGCCATGTGGTACATAGGTGCTATGGTTTTTACTGTTA TAAGCTATACAAAAGGATACCGTCTGCTACCAAACCAACATAAAAGAATGTTTCCAAATCTATTATTATC GGATTGCGTCAATAATCTGAGATGATTTCAAACATTCTTGTCAATCATTTTTGCCAAGGTTTGATGAGGC GTAGGCGTAGGACCACAAGCCTCAGATTTTTTGGGTTAGTAAAAATATAAATGTAGATACATCATCAACC TACGGCGTGTTGTTTGTTAGCTATGGACTGTCAAATGTGTACAACATATTTGTAGGATTTGAGATTGGTG TTGTTTACAAGCCCTGCAAGTGAGAACACGGATGTGGCTGGGATGTTCTTGGGGAAGTCCAGCCATGAAG AAGAGATGCATACCGTGGTTTGCAAGCAAATAGCTTGTACATTCTATCAGCTACATTATGTTGCAGTACA TGTTCTCTTTGTCGATGAAGTTTCTGTGATGGTAACACACATCAGTACATGTTTTTTCCAGCCCCAAATT CTCTCTCAACTCATTAATACTACTAACAATAATTGACCAGTCTGTAAAAATTAGCAAGTGTTTTTATACA ACAGTAAAAACAAACAAACTCGCTTCTGTTACTTCTCAAAGATCAACCCAAATTACAAGACACTCTCGTG TGAGAACTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACA TGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAAGCAGCAGCACAAA CAGAAGGTTTTTTGACGACGACTGCAGCTTCCTTAGATTCTCCATTGATCATCGAGGTTACAACTCTTTT GATCCCACTTGCTTCTTTGTACCTGAGGCAACCCTGAGGAAATGCATAAAATTATCAGATCACATGCTGA TATTAAGGTAACAGTTGTTTATATGTGGAAAACAAGCGTGGTTCTCTCAAGTGAGACACTGCAACTACTT TGTTTTCTGATTAAAAAAAAAAACAGTTTTCTACCTCTTGCAGTTCACCATATCTTCAGAGGCATCGTGT CTAACAAGTGTTTTTGTGGATGTTCCTCTTAAATATTTTGACCTGGAAGTTGTGTTCTTCTCAAGCTGCA GTTGAAATTAGTATGTCACATAAAGAAAGAAAAAAGCCCCACGATGACCATACATGGATATGAGAGAACT TACTGGAGCTGGCTCTTGTTTTGGACCCAAGATTTCACCATGGAAGCCAAGAATGTTGGTAGTTTCTTCT TCTTTCCTTAAAAAACATGAAATTATTCTTCCCTCAGAAGAAAAGAACAAACAAGAGTTGCATACTACTA GTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATACTTGA CGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTAAC AAGTACATGAGCAACACATGATAGATAGATACATAGGAGAAACACAAAGTATACACAAAGAAACTGAGAT ACCCTTTGAGTGGTTTTGCAAGTTTCTTTATTGCCAAAGACATTGTTCTTCAACAGGGGGTAGGTTGCTG CTTGGTCGACATTCCTGTGAAATTCAGACAAAACAAAGTATATCTGGTGAGGTGGTAGGAAAAAAAAAGA ATAACTGAAGCAAATAAACAATATTTTCCACACCTGTTATTCTTAAAGGCTGAAGAATTTTCTTTGTCAT TGCTTCCTTCGTCTGCTTTGATGTATCCTTTATTACAGCAGGATCTTCTCCGGCCTGGAGTTGATCGTCT ATATTTCTCTTCAGTTTAACCAGCTTCTTTGGGGAATGAAACACCAAAAGCCTTTGCAACAACTCCTAAA CCCTGCTGGACTCTTCTTATGCCTCAGTTAATTCCTTGTGATGACTTTGGAGTTGCATTCTTGTTTGTGG GAACTGCTTTCACTTCTCTTGGCCTCAACTTACCACCATAAGCTTTGTGAGGAAGTGATGAGATCATAGC CAATCTAGAAACTCGTGATCTTGAAGGTTACCGTGTTGGGGAATTTGGGAGGATCCTCACTGTAATAACA AAAGCATGTAGAACATGTAACGTTAAACACACACTACAGTGACAAAAAGATAAAACACAAGTCTCATAGT TTGACTTTCATGTAACCTCAAGTCCTTTCTGTAAAAAGCTTTACGAAGAAGACGAACACTAGGACTCCTA GCTGCCATGACCTAGGTAATGTTCATCAAACTCAAAAGTCTTAATCTTGAGAGATGACCCGAAGACCGAA TCACTGTGCTTCTGATCACATCCTAATTACACATTATCACCAGTCGGGATTAAATCAAGGGAGATTAATC CATATGCCCTCTACCCTCCAAAAAAATCCCCATTTATCCCTTTATTATAATATAATTTCTTTTTCATTTT TTTTTAAATAGAAAACGTGGCTAAAGACAGATTGCCCTAAACTAATTTAGTTATTTACAAGATCCAACCA GAAAGATCCGACCCATACAATACAAACCCTAAAACCCGACCCATCTAAACCAAAACGATGTCGTTTTGTA TCACTCAACATTCTCTTCTCCAAAATTTTCAATCATCGGGTCTGTCTCTCCTCATGCGACACTCTCTATT GCAAAATCGGAGATTGAAACCCTAGAGTATCTATTTTCGTTCTTCCTTGTTTGTTTTCTATCTAAATCGA AAATCCATCTTCCTTCTTCCTTGTTGGTTCGTGTCTCAACTATCTCTTTGTCTCTCTTGTCTGAAACCCT AAAGTCGAGACCGCTTCGTTTCTTCATCCTCCTTTGTCGAAATCGAGGCTCCATCTTTGTTCCTTGTGGT AAGTGATTAGTTTCCCTTTATTTGGTTGTTATTTGGTCGAATTTGTATGTAGATTTGAAAACAAATTTGG GGAAAACTTTGAATGTGTCTTATGTTTAGATATTGGTTTTGAAATTGGATAAGAACTTGGTAAATCTATT GTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTTTGTTAA TAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTGAG TGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTC AGTCTCTTAGAGTCAGGAAACCGGACTCGGCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAA AAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTC TCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGT ATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACT AGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTAC TTCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGC TCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCC AGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGAT GATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTG GGTTAGACTGCGGTGATTATCCACCAAACTATGAGAAGTTGGGAGGTTATAAGTTTGTGGATTATTACTT CCATGACAGAAAGAAGATCACCATCACTGATGTGAAGCAGAAGATGTTGTCTATGCCGCCGTGTCCAGAT AGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATT TAGACGACTTCATATTAAGGATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAAC GTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGC GCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGCATATAGTTTAGAAAAATTTTAATTGTTTTATAA TTCAAATTTGACACTGTGACAATGGATTTTCTAGGTTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAG ACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGT CCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTGTTGGAGAAACAAAGGTACATGTATAAAT GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACA GTGTCTTAGTTCCAACTATTGGTGAGCAAATTATGCTGGCTCGTATCATTGATGAGGAGCGAGAGTATGA CCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAAGAATATTTGGTGGGAA GAGCTATATGAGTTGGATCAAGCTGCACGAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGT TTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTGGAAGAGAGGATTTTGGA GTTCATGGGAGAAAGATTTGCTGGACTTCACGTCACGGTGGAGACAATGTTAGAGGCTCAAAGCTCAAGG ATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT CTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGATACATA TGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGAGGCTGGAAAAGAAAAG GATAACATCGAGAATACTGAGGAAGAGGGTGAGAAAGAGGCTGATGACAATGCTCAGCAAGAGGGTGAGA AAGAGAAGGAAAATAGTGAGGCTGATGAGGAAGAAGACAGTGAGAGTGAAAGTGAAGAGTTGAAGCAAAT GAAGGAGAGAAGTAGAAGACAAGCTGCTAAATTGTGGAAGGAAATTGCGAATGAGGAAAAGATTGGAGGG AAACATGATGAAGAAGAAAGTGAAGAGAAAGAAGCTGAAACCAGTGAGGAAAAGGATGAGAACAATGATG AGAAAGATGAAGAAAAAGTGGTGGAATCTGAGGCTGAAGGAGAAGATGATCAAGTAGAGGTTGGAGGGAA AGAGGATCAAGAAGAAGAAGTTGAAGGAAAGGAGTCTGAAACCAGGGAGAAAGAAAAGGAGAAAAATGAG ACTGAGGAGGTGGAATCTGAAGCACGGGAGACAGAGATAGAAAAAGGAACTCCGACACCACCACGTGGGA ATCAGACAGAGAGAACTCCCAAAGATGATGACAATGAGCCTCGGGTTGAGCCTCGGGTTGAGACGAACAG AACCGGTGAAACTCCAACACCACCACATGGGAGTCAGTCAGAGGGAACTCCCAAAGTTGATGACACTGAG CCTCGGGTTGAGACAAACAGAACCGGCATATCTATCAGTTTCATCATCCTCTTCTGAAAGTTGCACTTCT TCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGATAACCAAAAA CGTCTTCATCATTCCAGATGTATGATGGCTTGTACGAATACAATACCATTGGAAAGTAACTAATCTTCAC TTGCACCTTAGATTCATCTACCCTTATCTTTCTGCAAATACGCTCAACCAAAGCATAGTAAGTGATATCT TCCATTGATTTCCTCAACACAATCGTGTGGATTTCATCTTCTCCTTCACCACCTCCTGAGATCCATTTTA TTTCAGCCCCATCTTTCATATAATATCCCCCATAATCAAAACAAATGATTGTGCAATTCGGATTTTGCAT TTTCCTGAAATAAAATAGAATATCATTAGAATTCTCATTATTAAGATGTTTAGAATTAATTATCACACCG TACAATCTTCTCTTACTAATACTAATTTAATTCAGTACTATACATAGTAATACTAGAAATTACAGTAAGA AATATCAATATAGTAATCCTAGTATTTCCAGTAAACCTTTTTTCTTTAGTAAAACTAGTTATACCAGTAA TACCCAGAACTTATCCTTGAACTAACTAATTCGCTTTTAGGACCCTATTGTTAGTATTTTACATCAACCA TGATGTATAATTCATCTTAAATGAAATTACACACAGAAAATCATCGAAACACACATAAAAATACCCAAAA TCTATAAACACAGTTTTCAAAATCTTTTTAAATCTCTCATAATTTTCACTGGATCTTCTTTTTTTTTACA CTAGCCGAGATATACACTTTTTTTAATAACATTTCAGCAAAAAAATTCATCCAAAACGGACGTTAAAAAT ACCCGATAGCCCTAAACACAGTTTTTGAAATCGTTTTTAATCTCTCAAATTTTCATCAAATCTTACTTTT TTAACGTTACCTATCATATACACGATTTTTAAATGTAATATCACAAAAAAAAATCATCGAAAACGAACCT GAATTGCCTATTTTTTGAGCTTCAAAAAACGCTAATGGAGGATGAGAGGAAGAAGCTTGTACGATGAAGA AGGAGACATGTGGGTCAGGAGAAATCTGATTGGTTAAGGTTGTTTTGTGGGCCATATAGGTTGTTGAATT ATGGTTGGTTTATTTAATTGGAGAATAAATGAAAGGCTAGTTTGGGGAGTGCAAGGATAAAAGGGTAGGA AGAATAGAGAAGGGGCAGTAAGAATTCATTTAAGGGGGTATGGGGCATATGGAGTTAATCTCCTAAATGA AGAAAACTGTTCACTCAAAAACCCTAATTTAAACACATAAAGTAATGAATTAAGTCATATTTGTCTACTA GGTATATACCTATGCTTTGAGTTTGGAAATTATAAAATGAATTAATGGGCTTTATTGGGTCTAAAGGGGC TTTACATTTTTAACAGGAGGAGGAGGGAGGACCGTCCGATTGAAAATACTTAAGAGGACGAAGACAAATC GTGACCGTCCGATTGAACATATATCCGTTACGGTTTAAAGATCCAACAATACACATACCAAAGGGATTTT TAAGGTTTTCTCCCCAAATGTCTTGGACGACGACGACTCATACAACAGTGAGTATTCTTTTTGCCGATCG TTAATTTGTTTATTTTCCGTTCTTAATCATGAAATTGACGCAATCGATTGAGTTTTCTTCCTCTTATTTG CGATTTTATTCAAAGGTTTCTCTAATCCTCGTCACATCTCTAGATCCTAAATTCGTTTTTTTTTTTGTGA TGCGATGGATTAAGTTTCCTCGTCTTCTTTGTGATTCGAAAATCCTTGTCTCAATCTCTCTCTAGATCAT GTATCTGTGTTTAATTTTGTTTTTAGGGTTTCTTTCCCGACTCCACATGAAACCAACCACCGTCGTCGAG GCACGTCTTTGTCTACAACAAATCTTTGCGGGCTACTTGATGTAAAGCGAACAAAGTAGATCAACAATGG TATATATATACTCGAATCTACTTTGTTTTTATTTTTGAGTTAGCTATTTTCAACTTTTTAAAGTAATAAA GTCTCTTGCTTTCCTCTTTTTCTTGACAGGGTTCCATTACATCCACAACTCCGAACAGAGTCACTGAAGC TCTACTATCGCCTGATATTAGGTAGAGACGACTCTTGTGCTCTACCGATTCTTACATTTGGTTTTAGTTT AATCCCCAAAAAGATCATATAGGCTGACACTAATCTAATAGTGTTGTGCTAGATTCTTATTTGGGGACAT TGTCCCGTCGGTTGGTAGTGCATGCGATGTTTGGGGATGAAACTTTAAGTACCCACGGCTTATTAAGAAA ATGACCAGCGGCTTAAAAAAAATAAGGCAAAGACTCTTGTGACCAAGTCTTTAAGCAAAAGGTTACAGAT ATGTTCATGTTGGATGGATAAAACGAACAACAATGAACAACAACATGTCTTTAGACAAAAGGCCATGAGA TTGTTGGAATGGAAAAAAGCGATAAAAAAAGGGCTTAAAAAGAGGTCTTTGATGAGACAATGATTGTGAT ACCCACGGCTTAGAAAAATTCATAAGACAATGTCTGAATTGGTCTTATTTGTCCCGTCGGTTGGTAGTGC ATGCGTTTGGGGATGGATAGTACCCACGGCTTATTACGAAAGCGACCAACAACTTGAAAATAAAGACTGT AAATTTGTTGGATGGACTAAACGACCAACGGTTTACAATAAAGTCTCTGTAAACAAAGATTATGACTGTG TTGGATGGATAGTACGATCAACAATAGCCGTGTTCGTTTGTTAACCGCAAGACGCTCCCGCTGCGGCAAG AAAAAGCACGGTGATGATGATCAAAATAATAGAAACTTAAGTTAAAGTAACCGCCAACTATTTTCGGAGA CACAAAAAACGAGACGCCGGTGCCGCTAAAATTTTCAGCGTCCCTTCTACTGCTCCTGCGTCATCGGTGT TGCGTGTTGTTAATCGCCGCTGCGGTCATGGGTGTTGTGTGTTGACGTGATTCCCGTTTAATTTTTGGTT GCTGCCGCTGCGTCTTGCGGCTAAGAAACGAACACGGCTAATGAACAAAAATGTCTTTAGACAAAGGTTA CAGATATATGTTGGATGGATAAAACGATCAACAATAAACAAAATGTCTTTAGACAAGAAGAAAAAAGTGG TCTTTGAGGCAATGATTGTGTGATACCCACGGCTTAGATAAATTCATGTGAACCTGTTGAATGGCTAAAG CGATCAACAGTTTACAAAACGTCTTCAGACAAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGAC AATATTGCTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGG TCTTAGACAAAGATTTTGTAGTTTGGTTTTCTGAGTTTTTCTGCTGTAAAGACAACCAGCGGTTAAACAA GTCTTTAGACATCAGAGCCAGAGACTACTTATTTACATTACCACAAGGCTTGAAAATCGTTACAAGGAAA AGACCAACGAGTGGAAAGAGTTTAAGACAAAGACTATCAAAACATGCTCCTTACTTCACAACAAGCCTTG GCAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTTAGACAAGTC TTTAAGACAACGACTATGAACCAAGTCGATTAAGACAAAGACTATCAAAATATGCTCCTTACTTCACAAC AAGCCTTGGCAAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTT AGACAAGTCTTTTAGACTATGAACCAAGTCGATTCTTGGTTTTTGTTGGATGGTAAAAACGACCAACAAT ACCAAGTTTTGAGGATAGGCACTTTGAACCAAACACTGAGCTTGTTGGATGGTAAAAACGAACAATGGCA AACCCATTCTTAGACATAAACTACGAAACAAAAAATTGATGATAAAAACGACCAACAAGCCAGGTTTAAG TCAGAGACTGGGCCGATAATTGATTCTTCACTGCACTACTAACGTGTTAGAAAATTCGTTTTCAAAGTTG CTGTGAGAAGCGGCTTGAAAAAGTCCTTACTATGGGATACAAAAAGACGATCAATCTCATAAAGAAAGTT ATGAAAAAGACTCTGAACATTAACATATTCCTTACTTTACCACTTACAACGTTAAAAACTCACAAGGTGA GTATGAATCATTTTGCGTGAAGTAAAGACTAATTAATTGTGATTTCCTCAGGTTTTGTATATATGTGCTT CAGTAGGATCGGAGCAAATTTCAAGTGTAGCAGATTCTTTGACAGGTATGTGCTCTTCAAACTTGTTTGT TATTTAGTTAATACGATTATGAAAATCACAAGATTGTGACATAAACATGAAGTAAAGCTATATTTTCGTT TATGTGGGTATGTGCTTCACAAACTGTTCATATCCTCCTCACTAATTCCAAGGATTTTCAGGTAGAGTCT TTTCCTTACTTTCTTTATTTATTTAGTTTTCCTTACTTTCTTTCTTATTCATTAGTATTATTACATTATT ATAATCTACAACCTAAGTTAAGTGATATGTAAAGGTAATGAAGATCTTAGCTCCGTTTTTAACTAAAAAC GTTTTATTAAGCTGTCTTGACAACATTTCTCTCATTGATCTAGCATCCTTGAGGTTCTAGAAACTTATTG CTAACATTTCCATTGATGAACAAGTAGATTCTTTTTACTATTAGAACAGTATATTGTGCGTTTACAGTGT TTTACTGTTTTGTAATCTCTATTTTGCTTGAATGTATTATAAGGTTTTTTTTAGTTTTTGAAATGGATGT ATCTTGGAGTTTCTTGTATATCAATGTAGGTGTTAGACTCCTGCAGATTGTGGTGGTACTTTCAATGTTT CTGTTTTGTGTCATGCTCCCAAACCTCCTTGCTCATTATTAACAGTGTTAGAATCTCTGTAGTTTGGTGC TTGTATGTATTATAAAGTCTCTTATTTTGTGAAAATCAGTTTGTCTTGGAGTCTCTGATAGATCAACGTA GGCGAGAGACTCTAGCATGTTGTTGTAGTAGTTTTTCTTAAGAAAATTTATGAATGTTTCTGTTTTGTGT CATGCTCTTAATCTTAAACGGTGTTATTTGGTGCTAGCGTGTATTATAAGGTCTCTCGTTTATGAAATGG AAATATTTTAGAGTATTGTTGATCAACATAGGTGAGACTCGTGAAAGTTGTGATAGTAGTTTCCTTGAAT GTTTATGCTTTCTGCTCATCCTAACCTTCAGTGTTCACTGTTAGTAGTATTTATGTTGCTTAGAAAAATA TTTATTAATTTTAGTTAGATCGGTGCTTGTGTGTCTATTATAATGTCTCTTAGTTTTTCTTAAAAAAAAT GTCTCTTATTTTTCATGAAATAGATGTATATTGGAGTCTCTTGCAATTGTAAACCAACGTTGGTGAGAGA CTCTTCAAAATTGTGGTCGTAGTTTCCTTGAATCTCTAGTGTGTTATGTTTTGTGCTATGCTCATAATCG ACTCTACTACTGATCTTAGATCTTCGCGAGTCCTTAAACACACAAAACCCTAAGATTTATAATCGGCTTT GTTTTCTTTGGACATAAGAAACCGAGAAAGTTGATCTTTTTCCAAAATCTCAAAATGAAAAGAATCGTTG TGTTTAGATTACATGCGGCTAGAGAAATGGTAAACCTGGCCGGTGTTGGAGAAGACGATAAGAGCGAGCA GAGAATCGAAAGATCGTTAGCCTTCTTCATCAACACTTTACGTCTGTTGGTGAAACTGACTTGAAGTCTG TTCACATTCTCGATCTTCTTTAACTCAATCCTTCCTCTCCCCATCTTCTTCTTCTCTTAACACAAGCAAT CAATCTGGGTTGATCTGTAAAATCGAAACAGGAGAAACAGAGAGCTAGATGGAAGTAGTAAGCCTTTGTA TCATAGGTATGTATTTCAAATTTGTTTGTTATTGAGTTATACATTTATGGAATTACAAAAAAGAGATAAA GACATAAAAGTAACAAATAGTTTCATTGGTTAAAAGCATATACCTGATACTATTGTTGGCCGAGGAATTG TTCAGGTATATCCTTTCTTGACTTTTTTTTCTTTGATAAATCGATACTATTACAAAAGAAAATTGACAAA CTAAGTTACACGTAAAAGTAAATAAATTGGAAACGAAGATCTCAGCTCCATTTATAGTTGAAAATGTTCT ATTAAGGTGTATGGACTCTCAGTGTTTTAGCATCTTTGTGAGATTCTTGAAACTGATTGCTAAAATATTC ATTGATGAACAGGTGGATACTTTTTTAAAAAAATATTGGAACATTACATTTGTGTTTACAGTGTTTGTCA TCTCTATTTTCTTCATTTTGGTTATTGTATGTATTATAAGATCTCTTATTTTATGAAATTGGTGTATCAT GAAGTCTCTTGTAGATCAACGTAGGTGATAGTCTCCTGCAGATAGTGACAGTAGTTTCTTTGAATCTTGA ATGTTCTGTTTTGTGTCATGCTCTTAACCCTCAGTGATAATTATAAACGGTGTTAGTTATTTCTTTAGTT TGGTGCTTGTGTGTATTATAAGGTCTTTATTTTTTGAAATGGATATATTTTTGAGTCTATGCTCAAGATA GGTGAGACCCTTTTGCTCAAAAAAAAAGGGTGAGACCCTTGAAAATTATGGTAGTAGTTTCCTTGAATCT TGAATGTAATTGTAACAATGACCAGGAGTAGAATATGCCAAATTAATTAAACCCTATGAGCTCGTAAATG ACCAAACTGAGTTTTGGATAAAGTTAGATACTCGAGATATATGGACTGCAGAGCTGTGCCTCAATGTAAA AATTTGAAGCATTGGCTTAGGGCATCCAATTTTCTCAAAACAATAAGGGAATTTTTTAGTGTTATCAATT CAATTAAAAAGAATACAAATGAAATGAAATGCTTACAGAAATTTTTCTGATAGTTAGAATAAAGAAAACA AGAGTATATTATAAAATTATAATTTTCATATTTACGAAATTAAAATTGTATATAATTATTTTAAATGTAA TACAATAAATAAAAGTTGGTCATATCATATAAAAGATTGTATGATTTGACTATTTTATACTTGTTTAAGA ACATCATATAAAATATTAGTCATATTATTTATTTTAACAGAATTGGTTAAATGATTTAAATTTTAAGTTT ACTTAATATTTTGCTTTGTAAATATAAATACTAATATTTTTGTATAGTTGATTAGTTTTATTTATTTCTA TTATATGTACAAACTACGGTAACATTTTGTAAATAAATGTAGGCATTTTATTTATAATCGCTTAGGGCAG TTTTAAAGGATGGACTGCTTATGGATGGTGAAAAACTATGGTAAAACCAGTACTAAGGAACTACATCAGA ATGGATTCATGTCTTACTATATATTGTTCAATGATACGATACCTCGGTGAATGTGCCCAGCTATTTAGCC AAAAGATCATTGTATTTTATTTGAAGTTCAGACTTCTCAGCGTGAAACTTCTCGTAGTCAGAGACTGAAG GACCTCCTCCTAGTTTTTGCTAAAATCAACCATGTTCCCATCGTAACTATTCCTAAAATCCTCTCTAAAT AAAGGGAAAAAAATGAGAAGTAACAGAGGAAGGTTTTGGTTACCGTACAAGAAGAAGACAAATGGTGATC TAGGTTCATCTTTAAAGCTTGGTTTCGAGATATCATCATCGATCTTGTCACTCGAAACACACTTAAATCT TTTCACTTCACTTCGTTTCTCTCCGCACTCGTGCATATCAAATAGAGCAATCGCGATCATAACTCCATAT TCCTCACTAGAATCAAATCCCAAAACAGAGTATCACAAATCTAGATTGAATCATAAGAAAACTCAAATCG ACAAATCAAAAAAAAAATTAAGACTTTAGAGATGTGAGAGCAGTATCATTTCTCAAAAGTGCTTCCATCA GCCGCACGACGAACAGCTTCAAAAGAGAAAGAAGAAGATAGAAAGAAGAACCCCTTTAATGCTTTTTTAA TTTTTTTTTTGTATTTTTCTTAAGAACCCCTTTATTGGAGGTGGTCACTTGAAGAGAACACTTGGTCCTA CTGTACTACACTCAAGCTTTTTTTTTGTCATCTGTTGATTAACATTAAGGAAACCGAAGGTTCAAGAATT ACAAACTTCGGACACAAGCCATAACAGCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGC ATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG TAAAAGTTCTTATAGTAACCCTTTGTAGAGGGAGGGATTATCTCACTGTCGAAGATGTGCTTGAGCCACA CTGGACACTCAAAAGCTATTTGATCCCCCATTAATTATACCATCCTTATTTGGTACGTTCCCGTTAATAA GAAACTAAACTCGCCCGAAGAAAGCTTCCCATGAGAACCCCTAAGCCTAGTTGCCTTGGGGGCTAACAAA ATCTCATCATCAGAATCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTC CTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTCTTAACCCCAAA CCCGTCACGAGGCGTACTCACCAAGGATCTCTTCGATCTAACCCTAAATCCATCCACACCGTTACTCTCG TTCTCACGATCCACATCCTGATCGTTCGGTTCAACGGCCGTGGAAGTCACCGACGCTAACTCCATAGCAT CCAAAACAGGGAACAGATCCCCCGAGGAAGAGAACTTGCCTGGTTTGGTGAGACACCGCTGCTTCTCGCC GCGGTAACGTTTCCGGAGCTTCTCGATCTTGTGCCGGCATTGGATGGCTGTTTTCGCCGGACCTCCAAAG GTAGGCAACGACGCGGCCACGTCGTCCCAGTCAGCCGCACGGAGGTTCCCACGGCGGAGGGCGAACGAAC CACTTGTCTTTGTAGGCATTGACGAGCGCGGCGGTCTCCTCGTCGGTCCAGCACGGAGGCGGGACTCTCC TGGTAGTGGTGGTCGAGACGGTGACGGCGGTGGAAGGATCGATGGCGGTGGCGACGGGGGATTCATTATC GGGGGTTGACATGCCGGTGGCAAAGAAGAAATTAGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAA GAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAGGAGGTGGCCGGTTTGAGATTGTGCTAAAT TGCACCGCGTAGTGATGACGTGTGCGCAAGTATGAACAAGTTTAAACCGGAAAATGAACCAAATAGATGA CATCACAACACAAGAATCAGTATTCGTAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAG CAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGA TTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGTTAACAAACTAAGAATGTATTATACTG AGTGAGGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCT AGAAGTAAAAACAACATTAAAACTAAGATACTTACTTTGACATGAAGTACACCGTGTTCTGTCTCAAAAC CAACAATGCCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCAT CACCCGACACATTAATTTCACAGATTAGAAGGAAACTGAGAACACAGTAAGAATATATCTTATGAAATCG GATGAGGAGAGCAGTTATGAACATCCCAATCAGGTAGACAGATCAATACAAAAAAAAAAAAAAGGCAAGA GTAACTTCGTGGAGTAGTAAACTATGGCAATCAACCGAGGTAAATTTTTTTAAGACATGACAGATAGACT ACCTGGCCTTGTCCGAAGATCAGCCCAGATGTCCACATAACTTTCTGCCCACCACCTTCCTGTCGAGCAG GCACCAATACATCTTTTTGCTTCTTCAACCAACACTGCGCAGAGAAGAAACAGAACCCATAAACTTATTA AGTCAATCTCTGTAACTTGAACCTATGTCAAGTGTCTTTTGTCCAACACTTAGGCGGCATGATCCAAGGA CAGTACAACTTAAAACAAGGCGATTCTCGCAGACTCACCTCTCCGAACTTGGACCCGCAAGCCTCTTTGT CCCCGCAGAAGACCCATGAATCGCACAAGCAAGGTCCGTCGTCGCCACTGCACATAACTTTACACGCCTT GCAACATTCATCCGACGAATTAAACTTGAAATCCGTCCCCCACTTCACCGCCGAACCCCACAGCTCCAGA TTATCTACTCCACGGCAACACCCTCCGCCGCCATCTACACGGGAGTGATCTCGCGAGTCAGTGAACCGGA CGGCGGAATCGAGTTTGTGACCTTGGGGACGGAGAAGAGCAGTGAAGACAGCGTAGACGACAAGACACGA TATCAGACCGATGAAAAGGAGCGCGGCGGCGGTAAAACGGCCAGGATCTCCGTCGTTTAATCGACGGGGC ATGGCCGGAGTAGTCTCCGAGGGTTGGTTGACTTTTGTGAGGAAGATGCGAAAGCGAAGAGGATAGAGAA GTGAGGTTTCATGAGATATTGAAAATACGAGAATCAATAATGATGAAGAGATGGTTGGTGAGTCAACTCG TGCGGCTGCCTCTCTGTAACCTTTGAACTATCATGGAAGATTGTGATCTCATTATTTTGTTTTCCTGTCT TCCTTTCGGAAGTTTCCTCTACGCTTACGTCAGTTTGAAGTAATCAAAACACTGTCGTTTTAGAATTCCT TTTTGGGTTGAAAAATCCACTGATATATACGTACCATTTGGTTTGACCAAAGAAAATATGTACCATCATC ATTGGTTGTATTAGGGATACTAGATTTTAACCCGCGCTTTCAAAGCGCGAGATCGTTTCTTTTTAAAATT TCATTTAAATTAATAAACATTTGTCGAATCTATATTTTAATAGATTTTTTTATTTGTTTATAGTCAATTT TTATAATATTGTCTTCTTTATTTTTTTTTATTATTATTAAAATAAAAATGTTTGTCCTATATTATCCTAC GTAGATCCTGTTGGTTTGTTCGAATGTGTGGGTTTGAATAGGAAATCGGTGTTGCCTATTTATAATATTG ATCGGATTCAAAGCGAGGTGTTAGATTTTAGGAGAAACTTGGAGAGGAAGTTGGGAGATCTTCTCTTTAA AATCGAATCTCTCTATATTTTAAGATTAGTTTTTGAAAAATTTAGTTACTATGTCAAATAGTTAAAATAT TTTTCTGCGTGTTCCTAAAATTAGGGCATCTTCTTTTTATTTGATTTGATTCCGTAAATCTTTGAGTACA AAATGGGATTTAAAACGATTTAATCAGCTTAAAAACAAAAATGTAAGTAGCAAATTGGTTGGGCTTTTCA TTTTCGAAAAACATTTAAAACAATTTAAAAAACAATTAAAAAAGGAATGAAATGTTTTGTAATTAATAGG AAAATTCAGGGGCAGATTCATAAGAAGTATTCTGCTTTAATAGTATAGATATATCCCATATCGGGAATTC TAAGGGATATTAAATAATATATAAAGGGTTATGATCAATTCATTAATTACTAATTGGTTTTAAGTTGAAA GCTCATAATAAAGAGAAAAAGACCAAAATAGCACTAAATCAAGTTTTTATTCCCAAACTAGCACTCAAAG CCAAAAGTCACAAAAATAACACTCAAGGGGTGGGGTTTAGGGTTTAGAATTTAGGGTTTAGGTTTTAGAG TTTAGGTTTTAGGGTTTAGAGTTGAGAAATGAGGTTTTGAGGATAAGATTTCAAATTTTGAAAAATAAAA AAATTTAAATTTTTCAAAAGATAAAATGCTATTTTGGCCATTTTAATTTTTGAGTGCTATTTTTGTGATA TAAACTTAGAAATGTGCTATTTTAGAGATTTGCCCCATAATAAACCCGAATCTAACATGGTATCAGAGCC CATATCCTAAATATCCTAAAACTCTTAATTAAAAATTAAAATTAAAAATTAACCCTTCCGACGGGGTATA AAGGTCGTGATTAACCCTTCCAACCGGGTATAAAGGTTGTGTTAAACTCGCTCGACTGAGTATAAATGTC TTAAAATTCTGAGATTTCTGGCCGATAACAGCCATCATCTCGAGGAGGGGTATTAGGGATATATATCCAC ATCGAAAATTTTAAGGGACACTAAATAATATATAAAGGATTAGGGTCAATTCATTAATTACCAATTAGTT TTAAGTTGGAAGCCCGTAATAAACCTGAATCTAACAGGTTGGTAGTTTGAATTAGTGCAAGAAGCAGCCG GTTCCAAACTAGTGTAAGAGTTACCATAAACATAAGATAGTTTTGCTTCAATTTGTTATTTATAATAGAT GAATGCTATATTTGTGGAAATTCTCTTAATTGAGTGGTTTAATTTGAGGGTTCGTCAATGTTTATATATT AGTTTCGAGTACAAGAGAAAGAAATTTATGAATATTAATGAAGACAAAATGTACAAATATCTTCAGCATC GTGTAAGTATAACCGTCAAATCGTATATTTTCAGAACATGTATAAAACAGTATAGTTAAATGTAAATTAT CATAAAACATGTTATATAATATTTATAACTAGGGTCGGCCCGGGCTACGCCCGGGTTTTTTGTTTAAATT TTAATTTTGATTATATATTTTGTATATTTATTTAATATATATATAGTATAACCTATTATAAAAATATAAG CTATTAAATTATTTATAACTATGCATTTTTTTGTCTTATGAATTGAAAAATTTTAAATCCAAATTTTAAT ATCCAATTTTTTATATTTTGTAATTGGAAACTTTATATAAGGTGAAGAGAAAAATTAACAAAAATTAATT AAATTTTAGTTATAGTGTTTGATTGGTTGGACTATAGATATGTTTCATTTCACTTACACCTTTTTATATC TTTTGTTTCCAATTAGTTCTAAGCAATTTAATTGACCATCCCCCTTGAAATCTACAATCTTACTTAATGT TTTTTTTTCAAAAATCAGCGGTTAAAATGTTATAATATTTTCTACATCAAAAATTTACAATTACATCAGT AAAAATTACATACTAAATTATTTAAACAAATTTTCTGCATTTATAACTAACTAATCGGACCTATAATCTG AATATTTTTTTATCTCACTTATATAAGTTTTTCGATTACATATTGTTAAATGGACAACCCGATAAAATTT TATTTAAGTTTTAGAACCATTGAATTCATAACTTTAATAGGTGTTTGAAAATTTGTCTTTCCAATTTTGT ATGTTCCGCTTCATCATGCAATATATTTTGATGTAATTGCACCATCTATGTTTATATATACATTGTTTCA AAAAAAAATCTTCTATATATATATATATATAAAGTGGATATATATAATCAATTTTGAACAATGACCATAA TCGTATAACAAATTGTCGTTACCAAAGTATAACAAATTTTGTGTTGTTGTTTTATTTATATTATAGCAGT GATGTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGC CAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTTGCTT GTTCCAAGCAGCAGTAAAGTAATTCACAGTTAACAAAAAAAACAGATGATACATGATAGAGCACCTCCAA CAATCTTGGAGGTTTATGCTTGTAGCAACAACTATTAGATCAACACAGAAGCCTTCCAGGTGGTTGTGAA ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATC AGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATAT GAATCAAATACCTGTCGATTTTAATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTA TGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTG TAGGGTCACTCACAATACTCTTCACAGCTGTGAGCTCACAGATAAGGTCTACAAAGAAATCAAGATGTCA ATATCTAATCACTTTCCAATGTTGATCCTGGGCTAAAGAGATATGAAGACGATTACCGGGAAGGTGTGTG TTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAA CCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTC TGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAG CCGTGAGACGGTGGCGGTATGAGGGTTGCTTGAAACATTAAAAAAATGAAAAAAATAATCAATAAGGGGA TTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTG TCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCA TCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC CAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAGGTTTTGCTGATATTAGGAGCCG GGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCACTGCCTGCAAGGAAGATAA GAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATC ACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAA GTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTAGGGG AGATGACGAACCCCTAGCTTCTTCTGTCGACATTCTCGATGAAGGTGCAAGAGGAGAGACGAACTCAATT TTTGCGTAATCAAACTTAGGGTTTTCGATTACAGGCTGCCGGGCCGCAGAAGAAAATATCAGCCCAATCA CGTTTCACAGTCAAAGCCCATCGGATTAAATGAAGTGATGCGTTTTGCTTGTCTGGAACACGTGTCATGC TGAGGTGGCATCACCAGGAGAGAGCAAACCATACTTTATATATAAAGATAATTTGCAGTATCGTAATAAA CTAGTGAGTTTGTTAGAAAACGAAAACAAAGTGTGAAATTAGGAAAATATCCAATACAGTGAAACTAGTA CACGCACATATACATGTCATAATACAAATTATCTTTGTCGAACTGTGAATAATAGTGTCTTTAGGTATAT AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGA TTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC TTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCAT GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCG ACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACACCACGAAGT CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG GCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCG GAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA AGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACATCTTTTGTAG CCACCAGAGGCAGATTATCTTTTATCTTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTC ATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTA ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG TTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTA GTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA AGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT TAAAGATGCTAAGATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTT GATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT TAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCT ATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT AGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGAT ATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC ATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA AGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACT TGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG GAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAA CAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG AGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA TCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGT TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTG TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGA AATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCA GCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATCTTG GAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGA GCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC TTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAA GCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAAC TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT CTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGT GAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTG GTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT TGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCT TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG GAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGA AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGA GTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCAT ACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGAC ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC ATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAAATCAATCATTTAGTTTGCATCA TTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATG CCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGC CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGT TGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCC TTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGT ATCGGGAACGACAATGCTTGATCTTCATTCTTGCTAGATTGGACACTCTATTGTCTAGCTATAGGTGGGG GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAAT TGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCAGCCTAAAAAA AAAAAGGAAAAAGAAAAACGAAAAAAAAAAAGAGAAAAAAAAAAAGAAAAAAAAAAGAAAAAGGGGGCTA GCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGA GTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATT GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGAT ATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCT CTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGA ATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGATG AGTGTAAGAACAAAAAGAGTTAAGATAGGCCTAGAGAAGCTAGAGTGTAATAAGAGAGTGTGCTAGTTGT GTTTCTTTTGGCTATGTGCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGAC AAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTG CATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGG TATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAG TGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCT ATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACG AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTC CCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCT CTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCT CCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTA CATTTCTAAAACCTATGTTTTAAACATCTTTTGTAGCCACCAGAGGCAGATTATCTTTTATCTTTTGATC TATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGT TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCAT GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAG GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCC ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT AGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGT AATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCAT CTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCC TTAGTTCGATACTTGATCACCCAAGGTCTAATCCTTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAGAA AGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCATTGGTTGCACTT AGATTAAGTGAGTACTTGCATTCCCAGTGCTTTGATATCCCTCAGAACTGGATCGACAATCTTCTATACT ACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAATAATTATGAGATAATATTAAAGTATGTGA TGCAAATACTCTGAAAAGAGTGAATAATAATGTCTTTAGGTATATAGCTAATTATGAGATAATATTAAGG TATGGGATGCAAATACTCTGAAAACAATATAACAAAACTACACATTGTAGTGTTTCCACGTGGGTACCAT AGAAATGGAAAATTAAAACCGAAGTTGAACCAGCCAACAAGAGCATCAGAAAAAAGAAATCAAAACAAAA CTCCACCAGAAAAAATCTTGAAGAGGAACATTAATCTCTAGTAGCACCATCAACGAAGGAAGCACTAGCG GAACCATAAATACGCATAGTTGAAGAGCCATCTGCCTAAAAGAACTCACCACTATATAAGCTAGGTTCAA GCCTTCAAGGAAAACCTTTGATCAACTAATTAGGTGTAATATTTTTTGTATTGAAAATGAATTATGGAAC AAACCGTTGAGCAACATATTTTAAAATGCTTTCTAAATAAGTTTTGAGTGGGGTATTTTTTACGGACTTA CTATACTACCCCATTTGCTTTGAAAGCATATGTCACCTTGTATTTGCTGTGCTCTTATTACCTTTCCAAT CACATTTTATATTTATTTACAAGACTTTGTCCGAATATAGATATTTATCTGCAGTGGACAGATGCGTTTG GGAGCCCATAATAAAGGATAGAGAGACATGCACTTTTGGATGATAGCTGAATATAGAAACTAGAAAGCCA AGTCGATAAACTTATCCATCCCTCCACTCACTCGATCGGTATCGAATGGTGTCGTTCCTATCATCTCGAG GCATTGTCGATAGCCGCTTTATATCTGACACGTGGTAGTAGATTAGCATATGTCCTCTATCATCTTTTTT TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTACTCTATCATCTTGTTACTTACAATACTGTCCAT GTTGCTAATCTTCCTTTACTTGCACTGGAAGAAAAAAGTAATTATCAATCCTAACCGCTAATTTATGATG AATCTAAATAACACAAGACACAAAGTTCAATATTTATGACTAGATTGATAATTATTCTATTCTTTCAAAA GCATTCTTGTTATTTGTAAGTGTTTAGATTCTCTGTGTTTTTTAAATTACATATTTTTGTATTTAATACA TATTAAAAATTGATTATAAATATATCATTTTATATAACTAACTATTTTCTGAAATTTAACAAATAGTACT TGAATAAGCGTAACTTAATTTTTTTAAATTTATCATTCTTAACTGAAAAAATTTACAAATAAATGTAAAA CATAACCTTACAACAAATAAAAGTTCAAACCTTTTTTTAATAGAAGAAATATTAATTTTAACACAATATA ATGATTATAAATATTAGGAGTTGAAATTTCATTTTAATCATTATTGGACTTTTTAGTTTAGGGATGAGTC TATGTGTAATGATATTCATTTTAGCTGTTAAATCTTATATATTAAAACAGAAGTAATGATGACTTCTTTT CATGTGTGATTTTTTTAGTTTGAACCATTCCTAGAAAATATCATATTTTACATAAGTTCGTTATTATATC TTTTAATATCTTTATCTTTTTATTTGAAATACAAATGAATATATTTAAAATGTTCTAACAAAAATTATTT AAAATCTTCTTAGAATCTTTTTAAATTTACTTTCAAAAATTAGTCAGTTTTAATTTAAATTATCATAAAA TATAATTAGAAATTAAAATTGAATATATTTTTGGTTTATAAACGAAAATTTAAATAAAATGAAATTAATT AATTTCACAAATACATTTACTAATAATTTTTAAAGATTTTGTTAGAAATAAATATTTATATTTATTTTAT TTTTTTTTCAAATTTGTTTTCTAATAAAATAAAAATCATGATTTTTTTATGAATGATATTTTTATTTGGA CCATCATTTAAATTTTATATTAAATGTATATCACTAATGCTAATATACATAATATTTTTAACTACTTTAA TCATAATATATTTTATATCTTTTAATTTAAAAAAAATCTAACAAATCTCTTGAAAAAGATTATAATAAGA TCTTAATTGTCATAAATTGAATATAAATATTTTCAACTAATTTTGTAATTAGTAATGAAATGTTACTAAA CGAATAAAATTATATCCTATTTTATCAATTTTATAATAATATCTATCATTTTAAAATAAAAATGTTATAT TGAACAAAGTATGATAAAATTATTTTAAATTGATAAGTTAACATATTTTATTTTCATAAATATAAAATAT CTATGCTAAAAATATAATATGTTGGTAGAACGGGTTATATTAGTAAACTATATAATACATGTATAAAAAT TTAACTTATCTTAAACTTTTTAATATACAGTAATTTATTATATAAAATTAATAAAAATTAAAAAATTACT AAAAAAATCTAGCGATTTGAATTATGGATCATGATTATAATAAATTAAATACAAAATTATTTTCATATAT GTTGTTTCATGCATTAAAAAATTTAGTTTAGTAATCAAACGCAAATTCAATAAGACAAATATATGATAAG CAACATATATATGTGATGATTTTAATTTATAACATGAAAACTATAAAATTATTATATTTGTCATAATTAT ACAAACATTTAAATATGTGAGTAACATTAAAATATATAATAATTATGTAAAACAAATATCTATATATATA AATGTGAAAATATATACCCGCACAGTTGTGCAGGTGGAAATCTAGTTATATGTTTAATAACCCTTTTATT ATTATACGAATACTATTCATTAAACTATATTGGAAGTTGCATTACCCTACAATCGGATTTAACCAATTTT ATCAACATCATTTTTATAAGTCCCGTTATTAATAGATTATGTGTTATACTTATTTGGTTAACAACATAAT TTAGAATAACTAAAAAATGAAAATGATAAAAAAATGAAAATGATCAATGTTTGTTACGCTAATGGCAGAC ACGTAAAGACCGTACAAGTCAAAATCATTGTATTAAGTCACACAATTCAACAAAACCATCCACAAGAAAA GGAAAATTTCATTTTTCTTGCCACTTTTACAAGTTATTGACACAATTATTACCTAAAATAGTCTTTAATA GGAGAGACTTAATTCACCAACCCGAATTCTATAATGGTATGTACGGCATTAATGTTTGAAGAATAAATCG CTAAATCATTTAATTACTCGTGATCTGTATGATTAATGACGTGAGGCATTTAACTAATCACATTAAACAA AAGCCAATGATCAATGGCATAACGGTAAAATAAAGCGAAATACAGGGGTCTTAACTTAACTAATCCTCTT TACCTTAGCTTCAAAACTCAGCTCCTTGCTACTCTTCTCTCGGAACGAAGACAGTTTTAAAGGAAGAACA AAAAAAAGCAACAGAAACCCTAATTCGCGAAGAACCCTAATCTCAAAATTTATGTATGTAAATGCATCTG TAGCAGAACGGCGGTTCATCGGAAAAGAAGCCGCCGCTTGTTTACCTTCCGATCCCAAACCTAAGATCAA ACATCATCTTCCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCAC CCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGCGA CGAACCAGAAGCTCCTCCGCCAAGTGATTCGAGTCCGTTTGATATGCTTCCACCTCCGTTTCCTGCTTCT CCTCTCCGTCCCTCCTCTCTACGTCTTCTTCCTCTTGATCAGTTTCCGCTTCTTCCTTGTCTTCGTCTTC TCCATTCTCGCCTTCTCCTTCTTCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCGCCTTCCTTCGATTC GCCTGATCATCGCTCGCTTGCTATCCCTCAAGCTGAGATCATCCTCCTCCTCCTCCTCCTCTCAGGTTGT TTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAGC TCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTTTATTACTACTCGA TGAAGGGTAAGTACGAAGGGGATTGGGTTGATGGGAAGTATGATGGGTATGGAGTTGAGACGTGGGCTAA AGGAAGCAGGTACCGAGGTCAGTACAGGCAAGGGATGAGGCATGGAGCTGGGATCTATAGGTTTTATACA GGGGATGTGTATGCTGGTGAGTGGTCTAATGGACAGAGCCATGGGTGTGGTGTGTATACCTCTGAGGATG GTAGTCGTTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCATTACCATTTCAGGTGAGA AGTCATCAGTTTTCGTTTGTTAACTTTGTGCGTTCTCATTAATTAACATGCCAAGGTGAGGTGGTGTGGG GTTTGAACACTGCAGAGTCGTTTAACTTTTGTAGAAATCGTGAAGCTTTCTGTATAAGGGCCAACTATTA ACCAGTTTGGAATTGAAATTAATGTGGTTTCTGATAGTTTCTGACTTCGAATCTGAACTTTATTGCTAAG CCTCTAATTGTGTTTTGACTTAGGATGCTGTGTTAGGCCTATGTCTGTGTTAGGTCTAAGTTTATGGCTT TCGATTTTGAATTGTTGATGGATTGTTAGGCTGCCTATACGTTTTGTTGTTGGCGTCACTCACCTTTTTA GGAGCAAATCAATTTTTGAAGATTAACTATTACTGCCATTGATAAATGCACGAGATAATAAATTTTAAGA TTCTGTCTTTCAGTTCCTGTTACATTTGGACCAAGAGTTTTATGTTGGACGGTAGTTCTTACCTTTGAAA CATTATAAGTCTAGGATGGCCTCAAGGTTCAAGCTTTTTTTTTGTTTGCTGGCATAAGCATTGATCTTAA AATAATTCGATCGGTTACTGTGTTGTCTTCTCTAGTGATACCTTCCTAACTAACTTGAAACTACACCTCT GTTGCAGAAATGGCGATACCTACGCTGGAGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTTTACCA ATTTGGAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGGCTTGGTATGTACACA TTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGCA CCCGTCCTGGTTCATCCTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCT TATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAGAG ACCAATTTGTAAAAATAGTATTTAATGTTCATATCATTCAACAGCAAGCTAGGAAAGCAGCCGAGAAAGC ACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAGCAGCAAATTCT GCTAGAGTTGCTGCAACAAAGGCTGTTCAAACAAAAACATATTACAGTAGTGGCGGCGATGATCCCTTAT GAGTTCGTGTGTCAAAGCTTTTGATATAGTCACAGTCATGAATCTCACCTCGAACTTCTTCGGTGACATG AGAGAGAAAAAGAGAGACATCTAGAGAATGGCAGTCAAAATTCGCATCTCCGTTGAGATTATCTTGAAGG TGGAAACCACTTGGAACCAATGTCGAGATCTCATATAAGTATTAAATAAGAGATCTGGCCATGGAGCAAG CAATGCAGGTTTACTTTTTTCATCTTTTCTCCCAGCTCTTTTCTTTTTTATGAGCAGGCTGGTTTATAAG CTGTACATAGGTTGTTGAAGAGTAAGCAATGTGTGTTAACAAAAGATCTTTGTAACAAGCGTAACCCATG TAGAGAAGCAACAAAACATTGTCTTTTACGTTTTCACCGTGTGAATAACAACATCTCTTCTTACTAGATT TCTTTTCAACAGAAAACGACAAGTTATAATCAACTTGACACAATCAACCAAGATGATGTATAATGAATTG ACAGAAGATTACATATATAATGGCCAATGACAAGTGCCAACATATTCATCTGTTCTTGTAAATGGTTATG GTCTTGAGGTACGATCAGTGCTGTCATAAGTCCTAACCATTCAGACACAATTAATGAACCAGAACTATGA AAGAAACTAACCACAAGCTAGAAGAATTAAACAACTGGTTTCTTGTAGCCATAGCATAACCCGAGCTTTA CAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC TCAGGTCCGTTTTAGTCTAACATGACCGGAGAACTCCCAAAAAAAAAACTAGAATAAGAGAAGAGATGCA GAAATCGTTCTCGTTGATCCAAACGGTGGCAATCTCCGGCGTATTCTCCGCCGTCTCTTGCTGGTGAGTG ATTATTCTCCCCCCGCCCCCTTAACTCTCATTTCTTCAATTTAGGGTTGATAATAATATGTCGTGTGTTA ATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGA TCTCCGTCGCGGAGGTTCGGACTCTGGTTGTCCTCCCCATTCTTGAGTTAGGTGACGACGATAGCTCTTT TTGCACTCTTGTTTGAGCAATTATCATTGTATCTTTTGTTTGAGTTATATGAAAAATCACTAGACATTTA CTATCAGTGTAAACCACATTGATTAAGATCATAAAGATTGTAACACTGTACTCTCTCATCTCCCATGTTT ATTATGTATTAGACATCAAGAACATGAACTTTACAATCAGGGCCGTTGATTATTTGAGACTAAATGATCA ATACATATTGTTATTTGATATTTAAATTTGGGGACGAGAATGTTTCATCTCATTATGTTCAAGATCGCCT ATGGATACAGTATATGTGAGAAATTAAACTAGAGAAGTCTCTTCAACCTTCTCAATGATCCTCCTGCCTT TGACAAATCCCACATAAACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCT TAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCTCTTGTTCATTTTTAGGTAAGTAAA TTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAGTCATAT CTCCCTTAACGCTTTCTCCCCTGCTAGCTCAGTTCCAGCCTGCCTTGTCACCTTCTACACTTGTTTAACC AGACCTTCCGGCGAGCAATTTGCCGTGTTTGCGTAATTCAGGTTGTTCTCCATGCAGGTGAAGCTGAACA CAGCACCATGTGTGTTGAACAGCTTACTATTGGTAAGTACCCGTCATGGTTTATTGTGTTGTAAATTTGT AATACCCATCGGTTAGCTCAGCCGCGTTTGACCTGGTGTTGTAGTGCCAGTATATTCCGGCTACTTTTCC TGATAGCTTTGCCCCGGTTCCTTGAAAGATTGCTTTCGCTGAAGCTAGAAGTTTGTGTCCCTGTTCCAGT AACTTCCCTGAATACCAATCCATGAAAAACTTTCCATATTTATTTATACTGTTCCATGTTCCATCTCTCC TGAAAGAACTCAGTATCTTCTGGAAGGTTCTTGTACTAGCCAGCATCATGAGGCCCACTTGTTCCCCTAG TTAGTCTTCTCGACTGATGATTCAGCATATGCTTGAAGCGACGATCTCAAATACTGCAAATCAAGAAGTA TATAGTTATGTATAATATTGGTGCAGTTAACTGTACACTATACAATATCTCACTAGCTTAAGCTATACCT TTTCATAGCACTGAACTCTCCAATTCTCGAGAACCTCCGGGTCCCATTGCTCTCAGGGTATGATGGGTAT CTCAACTCTCCACAAGGTCCCATTCCTACTTGAATTTCCTGCAATACATGAAGAAATGATGTGATTAGGT CACTGCATATATATATACTGCCCATGTCTTATATGAAGTTGATTATTTTTTTCTTTAAAAGAGTCTAGAT GCTTGCTTACCGCAAATGACAACTTCTATGTAATTTCTGAATCTTTCACGGAAACTCCTTATAAAATCTG AATAGACCTGGATAGGTGTACATGCACATAATCACATCCCAAGGAGATATACTCTGGATTCCTTCTCCCA GATTTGTCTGTGTAGACAAGATCAGGGTTCTTACTGATTTCTTCAAGCACCCATGGTTGCAAGGGAATAC TAGATTTTAAAAGAGACAAACATTAGCTACGCTAGAAGTTTGAGACAGATTTTGTTCAAAAGGGAGAAAC TAAAATTGCTTTCATTACCTGCAAAAGGCTCCAACGTTTCTTCCACATTGATGGGAAGACATAACGACGT GGAGTTTGAGACCGTGCATCTGAACCATCTGTATAAGCGCGGCATAGCCTTCCCAGTTATACTTCATAGG TCCATCTTTCTCAATCAATTTCCACCAAGCAAGCACCAACCATTTACAGTACTGCCTCAAACAGGTACGC TCTTCGAACCCTCATTTCGTAGTTAAGAAACAAATTTGTGACAATAACTGATCGTATAAATTATTGAACA TACATCCCCCCATTCTCTATCATGATTCCTTATGTTAATTCAAAGACACTAGTAATGTATTCTTGCCAAG CATATAGATAGATACATGAGCTCAGTTTCTGGTTTTGTTCGGTTAACAATGATAATATGCATGTTGTGAG CCTTATGACCTCTCCGGACGCTTTAGTGCGACTCTTTGTTTCAAGAGTCTACGGTACGCAGCATTGTAGG ACAAACATGTAGTAATATTATGTACATGCAAAGTTTTGAGCTTTATTATGGACCGATGGTAGAAAAAGTA CAAAGGTTATGGATCTGTTCATACATGCATCTGCAAGAATCAGTAAAAAAATAATGAGTAAAATGAGTTG ATATTTTCTTTTCACGTACATAGTTTCTGACTTTGATGTTCGTTGCTTGATCTAATTTAGTCTACATCTG ATTAGTGCTTTGTGTCTTGACGTTGGTTAGAAAAATCTAGTGTGTGAGTTAAAAATCGTGGGATGGTGAC TTGTTTTATTGACTTAAGGGAGTTTGATACAGTTGAAATAATGGTAAAATTCATTCATGTGTGTATTTGC TGGGGCTGAGCTTGAGTGAATGTCGCTAATCTTCGTAGACAGAAGCATATAGTGGCTAAAGCAGACTATA TGGTTTGTGGCTAGCTCAGTGGTCATATGGTTTTGTCACCAATTCATCATAGGCTTAAGTTGTTAAACTA AACAAGTCAGAACCTTAACATCTTCGAAACCTACCACTTAAATTATTACTTACCTATTTGCGTCACCAGA TAGCATGTGTATTTAACTCCCATGTAGAGCAACTGGGTTTGCCCGGCCCCTGGGAATTAATCCAGCCTTC GGGTTTACCTTGGGATATCAAAAAATAGAACCCTTAACAATTAAGCTTTATAGTGTCATTGTCTTGCTTA GATATTTTTCTGCTTTGTGAAATGTGATAAGTGTTCATCCAATAGGTATGTGAGAAAGTTAACGAGTTTG TATTTTACCAATCAAATAAATATCTTTTCGCATTAGTACAAGATATATTCTCCCACTCTCCTCTTATGTT GAAGCATGGCAAGACATAGTCTCTTCACACGAATAAAACACATTGTGTAGAGAGCCAACTCGAACTCTGG ACTTACTCCAACTAGAGTACTTGACACTGATTTTAGAACACAGTTCCACTAGAATTCGATCGTTAGCAGC TGAGTCTCATGAATCAGGCCGTAACGGAATCATAAGTGTGATACCTCAGTTAAACAGCGGCATGTTTCGT TAGCATGTATATTGGAGGAAACATTATGTGATGAATTGAAAGATATGTTACTTTAAACAATTTCACCAGG GAAATCTATATAGCGTTGATAAACAAAGTTTAAGCAAAAAAGAAGAAGCTTCTACGTATTGTGTTCTTTT CAGCTAAATCTATCGAAACTCCTTTAGGTTCTGAGTGAAAGGAAACTTAAAAGCACTATCTTAATCTAGA TTTGGTAGTTGGGTCACGACACTATTCTATTATGTTTTCACCGCTCGCTTCTCTTTAAATGCTTCTCCAG TTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGG TCGTTTGTACTTGCTGACAGTTAGTTGATTTTAATTCTACAAGTACAAATGAAAAGAAAAAAGATAATGG CTCATATACGATAGTGCCATAAAACGTGTTCCATTTCAGTAAATTTCGTAATTAGAGTAACAAATGTTAA CTATTGTGGAGGTATAGTAATTGGTAGATATATCAAAAATATGTTCCTATTTTCTACCGAAATGAGATAG TTGACTCATAGCATGCAAATTTACGAATACATAGTAGTACAATCACAAAAGAGGTGTTTAGAATTAAAAT TGTATTGATAAAATGTTTTAAAATATTACAAAGAGGATCTTTACTTTACTAAGAACACTCTTTGTAAACT TGAGAGATTCTTCGGTACTTAACTCAAATCAATTGGCTCGTATTACAACACACTCCAAACCTTTTTATTT ATAGTCCAATGTCTAAAAAATATTTTTTGGAATATCCTTTAGAACTTTAATGTCTTACAATATATAGTAC ATAAATTATATCTTACATTATTCACCACACATAATTGATGTTGACTCTTTTGGCTAATATGATGACATAG ATATCATAATATTAATATTATCTATGTTAACATCAACTAAGTACGACATATATTAGTTAAAAGAGTCAAC ATTAATTATGTGTGGTGTATAATATAAGGTATAATTTGTGTAGTGTGTATTGTAAGATATTAGATATCTA AAAAATATTCTACTACAAGTCAGCGAGTGTCGCCGTATGCAGATAAACAATGCTCATAATAATCAATCAT AATCCTATGTAGTTTGGACGCCTAAATCATGAAAACCAAAATAATGTTTTTGGTACGATCTATTTTTCTC TCTCGTAACTATCACGTAGCACTATATCCACACAAAGTTAATGCCTCATTCTATATACCCATCAAATGAA TATTAAATACCAGTTTCCCATAAATTCAAAGTTCAAATCTTATTTACCCCCGAATTAAAAATTCAAAATC TATTCACCCTAAACCATTATTAAGCTTGGCTTAATGTGTACCAACATATGTTTAACCATTAAACACCAAT CAAAATCCAAATTAAACTAAGAAAATTCCTTATTAAAGCGATTAATCTCACACTCACTGGAAATAAAACC CAAGACTTAAAAGATAAAAATCCCCAAATCATTAAAACCAGTAGGGATAAAATAATCCGATTCTTCTCGA TTTTGATGATTTGGGAATTTTGATGAGTGTAAAATGAATACCTTTTCTAGAGTATTTTCTTGGTTTAATT TGAGTTTTGCCACGTATATGGTTAAGAATATAATTGGTACACATTAAACCAAATTTAATCATGGTTTAAA AGTGAAATTTAAACTTTGAATTCACGGAAAACATGTATTTAACATTCGGGTACATAGAATCAAACCTTAA CTTCGTGTGGACATGGTACTATACCAAAGTTAAGAAGATCGTTAACCATATAAACAAAATAATATCGATG ATAAAAAAGATTGAAAAATATTGAAAAAGTCTTTCGTGTTATTTGGTAAAAACAAGGACAACAATAAAGG ATTCTTTTACAATTTTATTGAAAGAAACTCAAATGTAAAAGATAAGAAGCATTTATGTTTGAGAAGAAAC TAAACATTTGGGTTTTGTAACCAAGCAAAGTAACCTCCCAGAATGCCTAACTCTGTTATAGACAAATGTT ACACAGATCAACTTAAAAGCTCTCTTTGGGAAAACCAAAAAACACATAAAAAACTCACTCTTTGCAAAGT CTAGTTCTTTACAATAAAGCAATAACTTCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCA AATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTC TTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCAC GGATACGAGTCAGGTGACGACCAAACCTTCTGTTCCTCAAACTCTGTCTGCTCAGCTAGAGACGTCGGCA TGCAATACACTGTGTTGGGCTCTGGCTCCTTGAAACTAGCAACTGCAACGCATCCAGGAGATACGAATCC TTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA GAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGTTAGCACTTTTTTA TGCTCTACACTCGCTACAAGTTCACGGTTGAGAAAAATTCAATGGATTAAGGGGTCATATTAATTGATGA GAGATACTTACAAGGTCATAACCCACTGGAAGTGCAAACACTCCCTCGGTGTTATTGTAAACAGCAGCAA CATTTGGCGGATGGCTACCAACATGAGCTACATCACCCACTGACACAAATCTGGCAAAACAACAACACGA AACTGCTTCAGTTTCAAGAACAATTGAGCGCAACTACAGTATCATCATTAGCGTAACAGATAATACTTAC CCCTCTGGACAACTAGGTCTCCAGATAGTGCACACTCCTCCATCTTCAGAAACCTGAAAGCAAAAAATAA AAGTAAAACAATTGTAAGTAAACCTTGAAACAGTTGATCGTGTGGGTGAATTCTTAAAGTTTCGTCTCAT AAGAATTCTTATTTGACATCTATTGAACCTCAATGACACCGAGAGCAATCAAACGAAAATTACCTGCTTT TTGCACAAAGTACATCGACCTTTGGATTCTCGCTCACTACTCCAGATTTTTGAGAAATTGATACTATGTT TGACAAACTTTCTATCATCTGAGACAGAACTTGAGGAAGAAGAAAGGTCTCTTGATTTTATAATAGCCTT GTTGCTGTACGATTTCGAGTCTCTTCCATCAGCCTCGTTCCAAGCAAAATACACATGTCGCTGGCTTGAA GGAACCTGTGACGAGAAGATATAAAGTGTATTAGGTAGGTGCGTTGCATTCGCACGAGCTTCTCAATGCT TGCCAGTGTTAAACATGTTTATGGTCAAGTCGATATTATTATAACACAGAAGACCAAAACATCTTGAGAA TGGTCATTTCGAATGAAGATCTCCCTTTATTCAAACTCAGTTCATCTGTTTCAAATATTGATCTAATAAC TATGATGAGATAAGGAATAGCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCAC ATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGC ACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCT TTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCACATCCCACATAATCTTGCTG GGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTT AAGACGCTAATGTGAAATGGTATGGTAGTGGGTCTGACCTGTAATAACACAACTCTCTTGTTGGTCACAA TGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATAAAGCGAATTTTGAAGGTTC CCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAACAGA TAACAAACAGAAATCAGAACCAGCTTGGAAGTTTGAGCATGAATGGTAAGCTTGACCAAAAGAATGCAAA TTAATAGCTTTCTGGTAACATTAACAACATAATTATCCTCAAAGGAGACTTAGATGTCAACAATTATATT TAAATAATTCATGCTAGAATAGCCGACTTGTAGTTAGAAATTTTGGATTTGGTCGTAGACTAAAGCTTCC AAAATTTCTCAATATGCAGTCTCACTAATAGACAATAAAAAGAAAGTGAGGCAGTACCTGGCCTGTAGCT TCCTTCTCATCATATTCCCTGAGTATACCATCAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAG CGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAA AAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAAC CCTAAGATACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACAC CCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCCGCCTCGACCAAACCTG ATCCATTTTTCAGCCCTCTATTAGGCAAACTGCCAAAGTAATCAACTTAATTTTGTTGCAAGAAATATGT ACCTGTCTTTCCCTCAGATGTAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAG CCAATGTTGAGCTAGTCATACCCAAAACATCCACTGAGAAAATTAAATGTAAGGGATTGTGGATCAGATC TCTCCATATGCGATTTCCGATGGCTGGAAGTATTGAACTTTTCCGTATGAACCGATCTCTGTGCATTACT CTCCTTAGATGGACCTAAACGTAGATATTTTTTTGAAACATTAGCAACATTCTCGCTCTCTTTTTTCAGC AGTAAATATTCCGAGTATAGCAAAATGATGAATTAGCTTGTGGTGCCAGGAAGTAGAAAGGCTTTCTAGC CACAAGTTGTTCCATGACAATCCAAGTAAAAAAAACTCTCCTATGATGTCGTAAGATCTTCTGAGCTACT TATCCCATGTTGGGAGTCAAAAAGGAACATGACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACA ACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAATCTACCATGAAATGGAACCACGTATCCATAGTTA GTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAGAATGATTGTAGTTCACTATTTCATTTATGGTA ATAACTTCAAAGAAAATCAATTACCTGAATTTTGAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAA ACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCCTTACCTCTGAAA CATCTATGAGGCTGAAAATCAAAAACAAAATTAGGTTTAAAATTTGCTCGATTTGCATGCCAAAATGGCC ATATACTATAAATTTAATCCCCGAAAAATGGTAAAGTTTTATAGAAGGCAAGAATACTTTATATGTATCT CAGGATCAACTTGCGCGACACTAGTACTTTTCGGGAGACGATCCATCTGGAGCTTATTGCAGAAGTCAGC CGAAGCCCAAATGATAGGCTCGTGAATGTTTACTCGCCAAGTATTATCTGTCACCTACCAATCAAATAGC AAATCCATCATGCACTTCAAATAGGATCTCATATGTTTGAGTACATTGAAGATAAACCTGACTAGAATAC ATACCCGTACATATACATATGGATACACTTGAATGCCATCAGTTTCTTCATTACACATAGTAATTGTCAT CTTAAGCACTGGTTGATGACTGTCTCCAGTGTTATCTGGTGCCAGTAGAACTGGCATTAGAGTTAGAGGT AGCTGGTTATCAATCTGTAAATTGCCCAGAATGACTTTGAACCTGTAAACCATAGAAAAGAGTTGCTAGT TCAGATTTCCGAAGGTATTTCATGCGGTTGCATCGCTTCCTAATACGAGAGAACATATGACACTGAAAAA TTTACACGAATGTGCAACCTAAAGACCACAAGTTTTGTTGATAACACCATGTTGCCTAAAATTAGCACAT TTTGATTCGTATTTTCCAAGCATAGGAAAGAACATGAAGTATATTCATATTGTAACCCATTTATACGTAA AAACAGACAAAAAAAACAAAACAATACTGCAATATTTGAGTTTACCTGCTAGTTCTTCCCTCATCATACC CAGTGGAGTAAGATACGAAAACTTTCTCAAGGTAAAAATATGATAACTCTTTTGGCACGTGATCTACAAG AGAGATCCCCACTAGTCCCATTTCAATTATGAACTCCAGAGTGGTGGTCTTTTGTTCTGAAGGTGTCTGA CGAGTAGAATATCTATTATTCCCAACCGATGATAAAGATATGATTTCATGAGGACTCTGTGAAGTACTGT CATCATCAGTGAATCTAGCAATCTTGATGTCACCAATTTCTTTAACATGAAAGTTCACCTCTAAGTCCCT ACACAATTCAGAATCCACAACACCATTTTCCATGTCTAGTCTGAAAACCCCAGAGCGGTGATCATTTTCA ACCTTAGCATCCAAGAATTTCTGACCATAAGGATCTTCCCAAGCAAAATTTACTGTCGTAAGAGGTTCCA ACAAAACCCACGAATCTTCACCAAAACCTGATTGGCGGACACTGATTCTTTTGACAGCTGTTCTATTCTC AACCCTTGTTTAAGAAGTTTAAAACAGAAAAGAAATTAGTAAATTAATGATGGTTTCACAAATATGTATT TACTAATTGTAGAGAGGATACCTCATAGGACCATTGCTTGGTCCAAGTCGAAATACAACAATAAAACGTG ACCCTTCTTCAAATCCCCGTATCTCTGCTTTCAAAAATCTACGAGCACCATTTTGACACCTTAATACAAG AACAATTGTGTCTTCTCGAGCAACTTGAACAGGAAATGACCACTCTGTTTCTCTTAACCGAACCTGAAAA TAGGCCAGAGAATAAAAATTATACATCATTAGATAATAACAGAGATGCTCTTACCTCTCAAATGAAAACA TACGTGGTGGCCAGGAGAAAGCATCCACATGCCAAACAATTTAACAATATAAAACATAATCGATTTGCAT TCAAACTTTAATTCACTGCTCACTTCAAGAAGTGTCACTGGTTTGACTGAGAACATATCATACTACATGC TCCAGTGGACATCCTAAACAACAGCCTTATTCATTTTTTTCTCTCGCAGTTTTGCAACTCATTGACTAAA ACAAAGATAAGAGGAATAAAAATTAAAAAAATTCTGCAACATAAACAGCTCACCTGGAGTTCATCTCTCC CACTTGGTTGGAAAACAAAGGAGACCCGCGAATCATATGCATTGAGTACCTTTGGTTCATCGTCACTGTT AAGTTTAATATATATATCTTCACCGATCCTGTTGGTGAAAGTCATGAATGGTCGAACAGATATGATCTGC GAAGTAAATTCGAGTCAGCAAGTAATAATAGAGAAGGTGTAGAAAATAAACTGCTTATTACCTTTGTAGG AACTGACTGATAACCGCAAGGTTTTGTAGACAGAAATAGCCGCATACATTTTCCATCGGGATCATACGCA TCAACATCCAAAGATCCATCCTATCAAAATAAGTACGAATCATAAGAATGATAGGGGAAGCAAAGCTCAA TTTTAGAGGAAACTAGTCTATCGAACAAATAAAATAGCATACAACTGACCATGTCACCAAGGGCAGAAAG ATCTTTTGCAGGACCATGTTGCTGATTGCCAAACTGAGATATAGACACTGACATGCCCATATGTTTGAAA TTCAAAGTAGAAGCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCAT TTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAG TGTAAGCGAGGGACATCTTGCAATCGAAAACCAGAACGGAGCATAGATTCTGATCATCTTCGTCAAAACT TTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCTGTTCGCATATATTCAACAGTATG AGACCAAATAAACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCA GAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAGCTTCCTGCCAAA TTCGATAAACCAAATAACTAAACAAGGGAGAATAAAAGAAATGGAACAACAATGTGTTCCTAGCTGATGT GAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCAGCAAGGAAAAGTAT AAAGGCTTCCTTATATCGACAGTATGCACCTTCACAGTTTCTCCAGAACCAATGAATTCTCTGCTCTGAG AATGACGAATCAAATCACCATTGTCTTGCTTCTCTAGCACTGAGTACTCAGCTCCAAATGGAAGATAATT TGCTATAGAAAACGGTGATTTGACCACAAGAGTCCAATCCTGAATAGGGTCCGAACGTATATCTTTAGCG ATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACTGCTTATCT GAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATACATATTTCAGACTCTGATTCACAAGC AACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCATCAGTCATTACACAC TTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCCTGACAAGGGAACCGGTAATATATCGCCAGGCT TCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTC AGTATTGTTTTCCACTGAAACTAGAGACCTGACATTTACGTATCTGTTTCCATCCTCCATACTAACTTCA CTTGCAACAACATCATTTCCCAACCGCCAGCAAGCAGCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCC AAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATTTCTTTTCACTTGAGGATTTTCCTTGCTC CACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTTGATCCCCT TGGTTCATGCTCTGCAGAAAACATGAAAAAGGTAAGAAAACTATTGCATTTATCTTTTGCAATCTTTGAA CCCAAAAAGCCGTGACATTTGCATTTTTAATATCATATTTGGACAATGAAGTCTACATAGGCGAAAGGCA TTCAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGT ATTGGTTGTCCTTCATATATCGTGCTACCTGCTTGCAATGGAGCTGAAAATGCGCCAACAGGTGCACCTA ATTTATATACCAAAAATGAAAGAAACACTTAACTCAGATTTAGTAGTGCTTGAGATGTACGACGAAAGAA TGAAGGAAACAAACCATTTCCGACGTCCGACACTATTAATTCCAAGAGATAGTCATCCTGGAAAAATAAA AAACAATAAAATATCAAAGCCGCAATAACCTTGATCTTGAAGACCAAAAAATAACAAAGAGAAAGAAATA CTCTTAATATAATTTATTCTTAAGTTCTTGTACAAGAGAGGTACATGCACCAAGATTAGTAACTAAGATT TGCCAAAGTTATAGCAATGCATAAACTGTTTCAGAATCAATCTGAAGAACACAAGTAGTAGAGATACAAA TGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCC AGCAGTATTCAGGGGATAAAATAAACATTAGGCCAACAAAAGAATGTTAGACATAGTGGAAAAGAGAATA CCAGCGAGTCAATTTTGAAGAAAAATATTTCACTCCAGTCAACGACTTCCAGCTCAGAGGAAAACATATT TGAAACACTTCCACAAGTACGTGCACATTGCTGGCGAAGCACTGGCTCCGTTGGGGAGGTCTGTTTGGGA GAGAGACGTATAACTCCAGTGTATTGATGAGAAGACAATCCAGAAATTCTTGGAAGCTACAAAAAAAGGT TATTCCATATAACACATTCTCCAAAGAGTCTATGAAAAACAAATATCATAAACTTAGTAGAAAGAGTCGC ATGGAGCATCAAATGAAATCACTTCCTTGCTTTATTACCATAGAAAAGTAAAAGAATAGGAAATAAAAGG AGATTCATGAGAGCCTGAGCGGTAGAAGTATATGAATGAAAAGGCATCACGACAAATGTGACCTTTGTTT TAGGCAGAAAGGTACCTGTGCATCCACCACAATAACTGTAACCATTATTCTAGGGTTACTGCATAGTTCT CCTCTGAGGTGAGAATCCAACATATTGGTCAAGACGGGAACTTTTACAGGTCTCATGTCCCCAGATGGCA TCTTTACAATATCTTTAAATCCTTTGATTTCGGTGGGTCTAATATATATATCCTGCCCAAGCTTGTTTTG TGGAATTATGAAATAGGTTTTCTTCTGATGCACCTCAATAACAGATTTTCCATTGTCAACTAGAGGAAAT GCGCCCTGTAAGACGTAGCAAACATAAATCAAGAGAGAAAGAAGACTGCGTCACCATGTGGCACATAGGA ACCAAAGGAGAAGTTCTCACTCTCTCTTTATGGTATTCATGGACGTTGCTAAGGTTGTTCCAACTAGAGT ACGCCTGGATAATTGTATTAGCATTTGAAACTGAGAAATTCACATTCAAGTCCGTTGTAGATGTCAGGCG TAACTCAGAAACCGCACCAAAGGATCTAGGGTTGAACTGGTACCTACAGCCCAATGGAGCGTAGCCATTA TATAGAATATGCTCGACATTAGTTGGAGTAAATAACAAACAAAATAAACAGAGCAAATCACCCGCAGCCA CAGGTGTTTAGACCTACACATTTCTGTAATAATGAGCTTTAAAGTAACACAAAATTAGAACAAAAAAAAC CTTAAGAATCCATCTGCAGGCTCGATGAGAGGCTCCCACGCTTCATACTTATCATTGTATGACCTTGCCG CTAAGGAGAAGTTGATGGTTGACTTTGTGTAGTTGGTTTTGCCAAGTAATCCAAAACATATATTACTCAA AGATACATTAACCAATGGAACCATCTGCAAAGTACATAGATACGCCATTATTTTCACGCAGATAAGTACG CCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCC AATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAAT CTCCTTGGTGGTTTTTTCAAACCACTACGGACGATAAAGGTCTTCAACTCATTGCCTATGCCCCATATAC TAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGC TACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATGCAACA CAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTT TCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAGGATATCTTGCTCACCATCATCACGAAG AACCACACAAGAGTTTGGAGGTTCATACCTACAAATTAACCCCCGAAAGTAATTAACATGCACCTTGCCA CCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAA ATAAGCCATCCCCTCAGTAATGATTGGTCTCCATATTGAAACTTTCTTCTGCGAGCCTGAGCCCCTATTC CACCATATCAACTGAAAGGAAGCAACAGCTTCAAATCGCTGACCAGATCTAACAGAATTCAGTGGCTGTG ACTGTGGCTGTATAGGCTGAATATTATCAGTAGTACGAACATCCACGTAGCTGGATTCTTTTGGCAAGAC TCCAGTGGATCCAAATAATATATGACGTAGCTCGTATGGTCTTCCTGATAAGCTGAGAGAAGACGGATCC GCAGGTAAGAAACTGCCAACAGAATTATCCACCCGCCAGAATGCTAAACTTGATTGAGAACTGCATTGAA TACAAAAGCAAGCCTAAAATGTCAAATCATCAATGAAGGAAGATAAACCACACTGAGGTGACCAGCACAG ACGTACACTGAAGTACTAAAATGGAATCATTTATTAATATTAACCAAAATCTGACAAAAAAAAACAAATG AACAAACAAATTTCTGCATCTGCAAAACCGGATACTACCAACTAAATTCCAGTTCGTTTGAAACAAGCGC ATGAAACCAATATAAATCACATAGACACATGGCAAAACACATACGAAATGTCAGGAAAAACAGACAGTAA GCATGTTGGCACATCTCTACAGAAGGGAACATGCAGCATTGTATCCATGTATTCAGAAAGTGAGCAACAA CTAAAAGTGAGAGGTTCGTTGCAGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACA AGGGGATACGGAAGAAGCTAGAATGCAGAAGACAGAGGCCAGTGGAGGCGGTGTACATCCACTGGATACC ACACAGCTTAACGCCACATAACCCTTTGGTGCTTCAGGGAACCAAATGGAACACAAATTGTCTCTTTCAT CTTTGTCATCCGTTGAAGTATCACCTAACCCGTTGGAAGCTAAAGGTGACCAAATCAATCTGAAAGATAA AGGCCTCTTCACTCTCATCAAATTGGTGTTGACAACAAGAACCCCTTTAGTAGGTGGTTTGTCCCTGCCA TGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGAT GACTAACAATGGTGTCAAATAGTCGCCAAGACTTGCAAAACCAGGAGGCGGATGGGGTCTCCAGAATGCA TATTTTTGATCTGTACAGGGATCTGCATGAAATGTAAGTAAGTACCACGTAACAAACCTTAAATGAACTG AAAAATTTCAGCAATAATTGGACATACTTCTGATGATCCCGACTTTATCAAACTCTGTGCAGACGACAGT CATTTTTCTGGATGTCATCCTTAGAAATGATAAAATGTCTTCTTCAACAGCTATAAACAATCTCAAGATG CTGAATGAGAAGTTCATAAATATGTTTGAAACTGAAAGCTCTATGTTAGTCGTCCCAGAAACACTTGAAT ACTTTACAGAGGTGTCGAACGGTTCCAGAATTTTCACTCCATTACTCTCCATGGTCAGACCCAATGTATG AGCACTCATTTCAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGA TAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTC AGCTCTAACAGTAATATCACGGAGAAGCCATTGACCTGCCATAAGCATCCAGCTGAGCATGCAAAAGTTT GTTGGAGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCC TGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCCATACAAAGA AGAATGTTAGCAACAATAAGAACCTGAAACTCAATGATCATTTCCGTGGACTTCTCCGTTGTGATGCTAG GAGATTGGGAAACCGGATCTTCCTTGCTCTCAGAGTCTTGTTTGGGGACTTTATGATATTCTTCCAACAC AACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGG CCATTCTTGATCATAATAGAAAGAAAAGTGAGAAACTATAAGGACGACAGAAATAATAAAGTTCAGATTT GACAAAGAAATAATGTAAGGACTTCTGTTGTACCTTGAAGATTACATTTCTGAAATGCAACTTTTTTCCA CTTCCCACATATATAACAGGCTCTGTACTGGGAGAAGAAAGGATGCCTCCATGTCTATCTTTCAGGTACA ACGTTCCACCATTACCATCATACACAAAATCATCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGG AGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATTA AGGTTTTTATCCTCTTCACTTGATAGGACACTTACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTA GAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAA TTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTT AATCTCTGATCTCCATCAGTCAGAGAATGTGAGTCACCAAAATCTAAGTCTGCAGGTCTTCCTACAGCAA GTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAAGGAA ACCCTCATCGTGTGTATTGGATTTGTAGAGAAGCCAGCCACCAGAGATCTGTAAACCAAACACGATAGAT TTAAGATGTTAACTCAATGTGCCATGAGATTGTTAACATAAATTTAAGATGTTAACTCTGCTGTAAAATT CCCTTTGAGATTGTAACATAAAATCTCTACGAAGCAACAAACATGAGAAGAAAAAGTGGGAACAAAGAGG GGGAAGAGTAGAGTCCTATAAGAACGATAAAATTGCTGATCCACAGAACTAGAAAGGAATTTAAACAGAA GCCTGATTTGATAATGTCAAAGAGAAATTACAATAAAGCAGAAATCAAATTACTGAAGTCTTTCTGGAGA ACCAATTCCGGACTGAGTCAAGGCCTATTCAAGATTAAACTTCACAAATGCATAGGCCCAAATTCTTAGT CAGAAGTTTGACATCAAACAATATTTGGTCAATCACTTTTATCCCCCAAATCTATCAGCTATGACAGGTC CAAGGGACATAAGAATACTATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCG GACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACAAACACAACTCCACCAGATTGATG ACAACAGAAACCTTCATTGATATCCAAGCATCACTTTTTTCAGTTTGAGCAGCATTAGGATCCTCGGAAG TAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGCGGAAT CTCAGAAATATTAGACTGTGCACACTCTGTCAAGATCTGGTATTCCCTATTCGAGAGGGCTGCTCTTAGT TCGTCTATCTGATAAAGCAGAAATTTAAAGAACGTATGAGTAAGAAAGTATTATGCTACAGACTGGATAT AAGACATTATCCTTTACCTCTACAGAGACTTCAATGCTTGGTATCTGATGCAACAAGTCTCGCAGAGACC TGTTAATGGTTACAGAAACCCCATTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACCAAC ATTAAGGTTGATATCCATGACCTAAGTTAAGGTTGTTTTCGTCAAAAGGTGTAGAAAAAACTAATTGTAC GATAAGGTAGTATGAATTTAAAGTGATATCAACCAGAATGAAATATGCTCAACCCAACAGCCAAACAACG AGAGTTCTCACCATCACTTTCATAGTTTCCATGTGAACTGCATTCAGCTCGTTTTTATCTCCAGCAAACC ACTGAAAGGTATTGTTCACAGTTATATGCACAACATCAAGCTTCAGGTAACTGCAAATAAAAGAAAACCC GAAAAGTAGAGAAAGGTAAATCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATA ACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATCAAAATCCAAGCATGAACTTACTC AGGGCTCTCAGTATGTCGAGGCATAACAATTATAGGCTTCTTAAGAGATAGATCCAACTTAAGAGCAGGA GATCCTTCAATTTCGCTAGTCGTAAACCACTTCTCGGAGTCCGTAATTTGATCCTTCATCTTGACAACCC CTTTTGAATCGCTTGGCACAAGCCCCATAAAGTATTCAGCAACCTACATTGCAGAGACTGATTGTAGGAA GCAAGACAAATTTACTCGCATCTACGTAGAGAGAATAATGAACTACCTCTTGAATAAAGCGATTCAGATA AACAATGCGCACTTCAGAAAGTTGTCCAGAGAGGCAGTAGTCAAAACCTTCATGGTCTTCATCAATGACA CTGAATGATGTAAATGCCAACTAGGAACGGAATCAAAGAAATGAAATTAACACGGAAAAAAACTCATGCA TCTCATCTGCACATCAATTCATATTCAACGAAAAAAAGAAACAAACAACGAATACCTCAACAAAAGAAGT TCCTCCAGGGTCTCGCATATCACAGATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATT CGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTA CGGAATACCTTGGATATTGATAGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAA AAGTATAATCTAACCTTAATATCTGTTAGCAAATTGTCTTGTGACAATGTCGCAAACTTAGTTCCATTCT CATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTT CCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCT CCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGATAGCATTTACAAACT CCAAAATAGCAAGAATTGTTGGCCTCCGGCAGTAAAATGATAATGTGGCTAGGCTTACGGTCACCTACAA TGTGTGAAACATCAGCCACAAAAGATAGTAAGCCTTGACTTTAAAACAACGGAAAAAACTAACATCTCCG GACTGAAAGATGTATAAACAGAAATCTCTTGACCTGATTATCAATATTATTATATTGAGGTGACGTCTGA TGGTATATGACTATTTGAGCCTTAACAAAACTATCCAGAGACTCAATTCTCTCACTGCTTGGCATAGTGA TATTCCTGTTGTCGACAGGGAGCAATCCATCCATTCGACTAAAACTGGGGGTCCTAAGAGATGTATAGTC AACGGAGTCAACCAAGATCTCTGGTGCTTCATAAAATTTTTCCTCCCCTTCGCTAGAAGAAAGATCATTT CCTTCAGGGTTTTTAATCTCAGCATCTTTAAAGGATGGAAGCACCACAGAAGACTGAATAAAAGATCTTG CTAAATAACAAGACTCATTTGAACCAGAACGGCTCACCAAATCTTCTATTTCCAAAGATTTTAGAACAGT CCCAATAAACATATCACTCCCTCTCATCGAGACTTCAACCTGGTTCGACAAAGACAAACAGACATTCATA AAAAGGAATAAGAAATGACAAAGATAATTAAGAAGCAGATCATATACCTTCCCACCTATGGCCCTAAACT CAAACAGTTTACTCTCTCTTGCAAGAAGCACCGCCATGAAGGAAGCATCGTGCTATATTAAAATATACTC AGTCAAAGCATGTCCCATAATAACAACAAGCCGTGGAATTTCACACGCAGAAATAATTTATATTTACCTG TTGACCATAGCTGAAACATATTTTGAGTTCATCAAGCACACCGGTTACATATAAACTCTCCAACTTAGAC AAATCCCAAATATCTTCTTTATGTTCTGTTTCTGATTCCTCACTGTCAGATGACGTATCCGAAAGACCGG CTATGGGAGCAGAACCCTGTACATTAAAGTGAAATTTAAACTTAAATCATCTATATAAACAGGTAGATCA TCAATGGAACTGTCTCATGGTAAGACGTCCTATTGATAACTGGAAGTAAGGTTCAAAATTAAATTTACCG AGGCCCGGTAGACAGCGCTCTGCAAACGGCTGTGCCAAGTCTTTCTAGACTCTTCAGAATCAAACATTAA TATGAGTGCATTCACATCCTCCATAACCTAGAGACCATAAAATTAAAATATTCAGCGCCAAAATTCATTG AAGTTTACAATCAAGATCCTCGAATCCTCATTGATGAACACACAATAAAAACATAAAAGTCATGACCAAA CTCCGCCTGCATTTATTAATTCAACTACATGAGATGTAAACCTTCTCATTGATTCGAGAAGCATTGCGAA TGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGTAAGCT ACAAAAGATACAAATCCTTAGAAATATGACAAATACCAACTAGAACGAACAGATAGAGTTAGGAAAATAT CAAAACAGCTAGTAACTTTAACTGCTGGGTGAAACAGCATAAAGTTTAGGTAATGAATTCTTACACTAGA TTTATGAACCTAGATAACTGGACTTTTAGTGGGTCTTTAGTTAGACAAGGAAACTTAATAAGCCCCTTAA ATAGCACAACCGAGAGAAATTCATTTCTTCCGTGTCTTTTTCACCTTGACTTCACTAGTTATATAATACA ATGCATAGCATTGGTTTAATTTACAAATGGCTACGATAACATAAACATTGAGCAAAAAAGGCAGTCTTGC CATAGTCTTTCCACATGTCAATCCTCGTATCTTATTCATTGTAAACACACGCAAACATTACATATAAGAG TACTGCACTTCATCGAGTTTGTACAGACCATCCATTTTATCTAAAGTCTAATCTATAAAGCCTCATCCAT TTTATCTAAAGTCTAATCTATAAAGCCTATCACTACTATAACGAAATTGCAAGAGTTCGAATCATACCTG GTATACTGCTTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGT ACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAATAAATAAATAGTGTCCAA GAAGATAAGAGAGCTTGCAACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGT AAAGACAACCAACCCTCAAAATCAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAG TTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGTGAGAAGTGAAAACCAAGTGACGG TAGCCGCACGGCAAGTCTGGTTGACGGGTACGATGGGTTTGGCCTACGAATCTACAAACCAAAACAGGAA ACAATAGTGCTAAATATCTACAGTTTGAAGCATAACTCTTTTACCAAAAATGTCTATGCCAGATGTCCAG AATTTTACCTGTTGTAGTTTTAAGAGTACCCCACACTTGTCAATAACTGGCAAGAAAGTAACACTGCTTT CCTTACCAGAAGATTTTTTCGAGGATAACTGTTTCCAGGAGTAGTCACCATCAACAAGTAATGCGGACAC ATCACTCAAAACTAAATCAAACTGTAGATACATATCCATTTCCTCTGACAGTTCACGCTTATAGTCGTCC TGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCATATTGTTAAAAAAGT TGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT AGAACGATGGTTATCAGGACGAAATTCGGTTGGAATTGTGATTTTGGGTGCTGCAATGTCTAAGTCGAGC AGAAACCTGGTTGTTTTGTAAAACGTCATTTACTAAAACAAGCATGGGCATAAATTTGACCACGAGCTCA TGAGAGTACGAACAGACCTTGCATGATCTTTCAATGCTCTATTCATTCCTTGTTGAGCAGTGCGTCTAAC TTCATCAATAGTTGACTGAGACGGTAAGCAAGTGAATTATAATGATTAAAGTGGCTCCCACGGGCAGTTG AATATAAGTAAGGAACAGAAATCTAATTCGAACAATTTTTGAATACACTGCAAGGATCAAGCTCTACAAA TTGGAAAGTTCGAGCAGAAATACTGACAAAAAACAGAAATGCATACTTACTAGATCCCATATTACCATTC CTTAGATTAGATATACAGTTAATAATGAGATTACAATTACCAGGCTATATAAAACCAATATGCACTCATT TTTGTCAACTTTTCACACCACGGCAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATT GTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAATTCCATCAATAGAGTCCTTCAGATACTGCA GGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATACAAAATTTTCTTAGAGAGAGGGG CACGCACAGTCATATAACACGGAGAAGCTTTTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTT ATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGCACTCTGCAAGAGAAGAGACATTTTTAAGGGA TTTTAAGAAATCACTGACAATGTTCTGTAGCCTGAAGAAAACAAATTCCACCTAACAAACCTCAGCAAGC GGGCCATTTGGCGATGACAAGCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCT TAATGGAGCAATTAAGATCTTCACATGATAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGA AGCATTACGCCTCATGTGTACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGAC TGCTCATCACCTTCTTTGTACCCTATGACTTTATTTAACCGTTCCCAATCTTCATCGGTGAATTGAACAG ATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATACAAAATACTTTAGAAAAAAATTG GGAGAAGGAGTTGGGAATTTGGAAGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTT AGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTT CATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTACTTTCGACATCCTA CTCATGTATTGACAATGAAAAGAAAACAGAGAAGCATCATAGGTACAAATAGAGAAAGAAATAACGAATT AGTCCTAATGAAAATTTATAGAACTACACAAGACCAAACGTTTGAGAAAGCTAATTGATCTGCTAAGATG CAACTAAACAATAATATTTTACCTCCATTGCAAAATGACTTCGGTATCAAGTCCCCGATCAAGGGCCTTG ATTTCTTCATCATCATCAACCACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGT ATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGGTAACA ATCTCAGAAAACGTAAACAGAAGAGAAGTGAAGTTAGGAACCGCAAGGAAACGGTTTCCAAAACGAATGC AAATTATAGAGAAATACGGCAGTAGCAAGACGACAGAAATGAATATCTCTAATTCGATACCTTGCTATCT TAATTTGTTCTGAAACAACTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGA TGGACGGTAATGTGCATATTTCAAACGCTGATTAAACGCAGAAAAATTATCAGCAAGTTTCATGACATCC CTGTATCCTCCCTGAGACAAAAAAAACACACACACACACAATCTAGACCTCCGCAGACATCCAAATAAAA AAAGAAAGAGCAGGAGCCTCAAATTTTGGCTTAACCTTTGATAAACAAAGTGTCACATCGTCCAAGTTAA CATATGCCTTCTGCAAAGGTTGATCAGTATTGGAAGAACCATTTGCTTGGGACTTAATGTACTTTGCATT CCCTGAGACAGGTTGCAGAATATAGAAATGTTTTCTCGTTAGGTCTTCAGCTGGCTTACCATCTTTGGTT CCGTATCTAAAAATCTAGAAATATGCATGCACCAAAAAATTAGATTTTGGGGTAAGAGACAAATTATGTT CCACTATATACATAACTTCGCTTATGAATACCTGATCCCACTCAGAAGGAAGTAAATCCTCCCATGGTTT GTCAATATACCACGGAGACATGTCAGAATCAAGATAGAATGCAAGCCGATCAAGTTCAACAGACTGCACA AAGGCAAACATAATTATAACAGGAATGTAAAGTGCCTTTGTTTTCTTTCTTGGCAGGGGTGATCCTTTCA CCATGCAATTAATCCATATATGAATTCCACATAAAGTTTTTCTCTATATCACTAACCCTTCCGGAGAGCA CCCTAAGTCAATCTTCCTCGGGTGCTTCTTACTATACCCACATAACTATTTGAACTAGATTATTAAAAAC AAACTACCTAGCTACTTACTACAAGCAAGCATAAGCGCAAGAGATCTGAACACAACACCTTCCCAAAAGT ATAAAACCGAGGGACAGAGACCTTTATAAAATGTTTTCCATAAGACCAGAAAAGCTTGTGCCAGACAGAT ATTAATGAGCAAATTTATACCTTTTGGATGGAAGCCAGAGTGCCGCCAGTAATAAAGGTCTCCTTCCCAT TCTCATCAACTGTTACAGCTAAGAGTTTTTCTAGTGTAAAACCAGCTGAAAATGGGTGGCCGGGATTGCT GCACTTATAATGTAAGCTTTAATCACAATGGGAAGACAATCAAAAACAAGAAGAAAAAAATTGTCATATT CTATTTACCTCTCTAGATCCTCGTATCTTATGTGAATATTTGATATTGACAGCTTCAAGTTTCCCATGAC TGTGTCGACCAATGATCCTACCCATGATTTGTTCTTATAAGAGAACAAGAAAAATATGGTAGTTAGTTTA ATACAATATTTCTGAACACACACTATCTACTTTGATGAGTAGCACTAGCCACACCATTTCCGTATGTAGT CGACGAGCTCTTTCTACTAGTTTTGTTTCCATTTCCTGTATATTGCAAACATAAAAGTGATTCAATGACT CAAATCAGATAATGAAAACAATCATAACATGAGCGACCTATCTCACCAGTATTAGCTTTCTTTTTTTCTC TTGGATAGAATCCTCACTACATCCTTCAACATCAGTTGCGGGTTCGGCTAATAAAAAAATTCGATCAAGA TAAACCACTACAGGTTCCTGGCCAAGCCTGCTCCATGGTACCTAAAATGATTTGAAACGTATCAGTAAAT GGGTGTAACCGAGTGTAGAAAAATCTGTAAACAGGAAGGTAAAAGACCCCTGCCCAGAAAAAAAATCGAT ATCACCCGGAAAAAAATGTATGATATTGCGTCACTTACAGAGACTACAACAGCAGTTGAAATACAATTTG TGAGCAAATGTGTAGAAAAACGGGAAGAAAATGAACGCACTCAAGCAGACATACTTTAGCTTTAGATACA ACAGACAGAAGAAAAAAACACAACACACCTTGAGTTTGACTGATCCAAGAAATCCAGCTTTAACCTTGAC AGGTAATTTCAAAGCGTTAAGTGCTTCTGGTTTTAGTTGCATATTCTTCAGCTCCACATCCCCTGCGAAA TTAAGTAGAACCAAGAGCTAATTAACAAATGAGAAAACTAAAAGTCCTTCCTTTTATTCAGTCGATCTGT TCTTAGTAACAAATGGGAAAACCAACTAAGCATTTACGAAGTGAACAATCAATGTAAACGATGAAGAAAG CAAGCAAGCCGATATTCTCCATCATCTTTGAAGAGTTCCAACCAACTAAACCCCAAAAAATCACAAAATC TGAACTTTACTCCCACCCTTCTTCCAAAATCAAAGAAGACTTTGCCGTTTAGCTATACGAATATTACAGC TCTTTATCCAACTACAACACAACACAAAACCTAAATTCGCTACTGAATATCACAGAAGAAACCAATCTGA CCTTGCCAGACACTGATCTTAAGGGCTTCCTTACTCAATCCCCTGACGTAGTTCCCCAAGTACCGCTGTA ACAAGTAGGCTACTTGATCTTCCAACATCTTCGTATCCTACAAATCAAAAACTGGGAAAAACAAAATCAA GAAATCTATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTA GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTA GGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACGGCTCCGTTAAAAAGGAATAT TAAAAATATCCTCTCCGATTCTTGGCGGTGCTGCTTATCAATTGTTGCCTAAACAAGAAAATTAAAACAT TTTTAATTCCATATATGTACAAAATCTATTTGGGAAATATCTAGGATATCACTAAAATTTTTTTATCACA AATATAGACTTTAATGATCAAAATGTTTCATTCAAGAAATTATATCCTTATACCCTAAGGATTAACTAAT CCAAATTTTAAGATTTAAAATCAAAGAGTGGGATTTGGGTTTGAGATTTAAAAATTTTATAAAACAGAAA ATAAATATTAAAATTTTGAAAATAAAATTTTTTAAAATAGTTTCAAAAATTATTTTCGAATTACAAAAAA AAAATTTGCCAAAAAAAATTAAAAACAAAATTCCAAAAGACAAATTCCAAAAAAAAAAATTATAAAAAGT TCGAATTTGAAAACCTATAATCTAAAACAATAAAAAAATTTATTTTTTATTTATTTTATTTTTATATATC TAGGGTATTAGTATCCTTTTACCTATTAAATGAAACATTTTGGTCATTTTCTTCCTTGTGATCTATTTTT GTGACCAAAACTTGAAAATAGTCTATTTATGAGAATTGCCCAATATATTTTGCCATCATACATTTAAATT TACAAAAAAATATTCTGAATATTTTTTAAATATTATGAACATTAAAATTAAATTAAGAGAAATTCCATTG GATAGCCATTTTTAGTTTATTTTCACAAAATAGTCTATCAATGAGGAAAATGACCAAAATAAATTTTATT AAACGGTAAAATATGAATTTATACCCCTTGAGTTAACTAAACTTAGGATTAAGAGTTAAGGGGTGGATTT TGGGAATGCGTTTCAAATTTAAAAAAATTTAAAATTAAAATTTTCAAAACAAAAATGGGTTATTATGGTC ATTTTATTTATTTAAGGCTATTTGTGATAAAAACTTAAAAAGCCTATTTGAGAGAATTGGCCTTAAATTA ATATAAACTAGGTGTTTTATCTGTACATGCAGATATAATTCTTTTATAGATAATTATTAATAAGTGTATT ATTAGTTTATAGATCAAAAAATAAAATAAAGGGGTAAACATTATATTTATATTTTTTATGAATCTTTAAA TTTCTTAATTTAAATTTTTATTGATTTAAAACATTATTTTAGATAACAACATTAATATTTTATTTTAAAA TATGCTGTTATTTTTAACCAATTTTTATTATATTAATTTATATATAATGATCTAATTAAATAAACAAATA TATAATTGTTAATACAAAGTGATGTTGTTAAACTAAATTTTTGAAATTACCAAAACCTACAAAATTTCAA AATAAATCAAAAGCACAAAAATGTTAAACCGAACCCAATTTTACATATTATATTAATCAAAGTAAATAAA ACTATGGATATATGTATAGTTATATTGTAAAGTATCTTCCATAATAACTCAAGGGAAATTACACCCCATA TACTAGACTTTTACCATAATTAACCAAATATCATAAATCCCACAATATTATACCTTTCTCTATAGACACA AACTAGTCACATCATAGGTATTTTCAATTTTTTAGGGTTTTAAACCAATTCACCCATAACTAAATAAACA TTCAAACAGATGAATCATGTTGTCAAACAAAATATTAATATTGTATAAGACAAAAACATTTCCAATCTAT TTTTATTTTCATTTCTAAATATTATAGTAGAGAAAAATAAGATATAGTCAATCTATATTTTTTACTTTAA AGTATATATTGCTATTTCCCTATAAATTATTATTCCTCTTATTATAAAATTATAATTTGTTATTTTCAAA TGGTCTTTTAACTTTAAAACTTTGATAATTATAAATAAGACTATCATTTTAGAAAATACAGTTTTGATAA TATAAAAATCACATTTTTCTTTACTTTATAGTCTCTTAAAGAAATTTTAATCTAAAAAGTTATAATTCTC TGAAACTCTTGAAAAAAAATAAAAGTAAACAGAGTTAATTTTAAATTTTTATAAATATAAGATACTTGTT GTAATATAAAATTAATATTTTGAAAATATTCTCTTTTGGAAGCAGATATTTTGAAACTATTTAAAAAGGA TAATTACATTCCCAATTAAAAAAATATTTAGAACAACAAAAACAAATAAATATTAATTTTCAACTTAAAT AACAAATAAATGTTATTCTTGCAACTGAATAATAAGAATAAAAATAAAAATACCAAAAAATCACGTTAAC AAACAAATATAAATCAAATTTTTGTTATTGGTTACATACCTATTTTAGTGCTAAAATAAATTTCATATTT AAAAAAATATGACATGACATATTACGTCTACAAACAAATATAAATATATTTTTCTTCATAAAACTATTTT TTATTATTTTAATATAATGAAAAATCAAATTATGTGTATATATACTACCTAATTATAAAAATTAATAAAT AAGAAAGAAAGATGTATATAAACACAAAATAAATACATGGAATTATCTTTTCTTTTTCCAAACATGTTCT CCATTTATTTTCTGAGATAATTTTTATAATATTAATTTGTAATCAGTTAAATAATGAATTATATAGTTAT GTATTAAAACTTTAATCAGTCTAATTAAAATGTATTATTAAAACTAATGGCTCAGATTAAAATCAAGGAG TACATGACAAATAAACAAAAAGCAAATTCACTTCTCAAATAATAGTATAGATTATAAAAATAATATTTTG ATGAATTTTCAATCAATAATTTTATGTGTGTCACAAAAATTAAAAATACATATCCGATATTTTTATTCAT ATGATGTTAAAAGTTATAAAACTTTTTCATTAATCCATGTGTGGAGAGTAAAGAGTTACTTCACAGTTTT CCAGTATATTAAGCTAAGTAAAATGATCAAACTGTAAGTTTTCATTCTTCGAAATTGTATCTTCCATTAT GATTATATAATACATTTATATAAAAATTCTTTTAATCAACAAAATAAATGTTTTACACCCAAAAAAAAAA ATGTTAGACGGAAAAAATATATGATTCGAATTTCAAATTACTTTATATAGACTAACTTTTAATAACTATC AAATTTCTAAGCTAAAATTATTTTCAAATTATTTTTAACTTTATCATGTTATTTTATTATATCTGAACCC AAACAAAATAAAATATGCTTATGGTTCAGACCAAGACTGAAAATCATAGTCCATAAGTCAATGCCTTATA TTAACGTTGAAGAGGAAACGCACACATTTGCACGTGTATAACTGCACGCTGTAACGCTTCAGATCCAATT GTTGTGGGCCTGTGTACAGTGTGGTTTCATTAACTTGTTCTTGGGTACATGCCACATGGTACATTCTGTT TTTTTTTTTTTTTTTTTTTTTTTTATAATAAGTACTTATATTATAAAATCTGCCCGAAGAATCGGGAATC AGATACGGTTACAAGCTTGTTTTGAACAAAATGTCAAAATCTAACTATTACAAGCCTAGCTTCGCCCACC CACTAAACCCGGCACGTTCCGCTAAGTTGTTTTTCGAAGTCATTCGATATCGGTAGCCGTTCTTGATGTT AGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATC AAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATG ACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGG GATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGC CTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCAAA TGTCTTTGGTTGAATAATATGAAAGCAATCATTACTAACAAGTCTATTAGCTATCTTAGCACCTTTAACA ACAAATGTCTTTGGCAAAGTATACTAAAAGCCTAGGAGAGTTGTCTCGAGCATTTCATCGAACACCTTTC GGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATGATTACTCTACTAG CAAGGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCCTTAAAAAAAACCTCCCTAGCTC CTTAACTAAATCACCCCTTAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGA TTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACAC AAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCC AAAAGATCCAAGATCATCTGCCTCTGGTGGCTACAAAAGATGTTTAAAACATAGGTTTTTCCAAGTGCAA AACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCG ACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAG CGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCCAGGCTTC GCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA GTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGAC TTGGTGGTGTCGCTCCGGACTGGTCACTCCATGCCTTGCTCGCCCAATGACCACTCTAAACACTCCTTTT TTAGCTCCAAATGCATCCAAATGTCTCCAGAAACTCCATGTGGTACTCAAATACCTGATAGAGACATATG TATGCAAAATGCAACCTAAACATGTCTAAATCCTAATCTATATGATGAAAATGTTTATGAATGAATGGAT AAAACAATGTAAATATGCAAGATATCAGTTCTCAACCATCAACATAATTCTCGGGAATGTGAGGTTCTCC TTGTTTCCTTGGATGCCGGGAGTTCCCTTAACGTTTCCGGAGTAGCTAGTTTCCGATGATCTCCACAAAG CTCATAACTTTCTCTGTCAATGAAGCTCAAGACAGCCAAAGGGGAGAGTTCAAGTACATACCAATGCCTT GCTAATGCCACCAAAGCCGGGATGAATGAAGCGCCACACGACGCCTGAACCGATTCCCAAAACGAGTAAG CACTCGCTTCAGCCATCAACGAAACCTGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAG TCCCTAAAACCTGCAAGAAAGTCAGCTACACCACCATAGAACACTACGGCGCCGGGATGTGAGCATTGAC GAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGCATCCATGGCCTTTGAGAACCAA AGGACCAATTCCTTGACTGCTAACACTTCATCCCTTGAGCCAAAGGAATGATACAACAATTAAGTCCAAG AGACTTAAACTCCTCAAGAGAAGCCGTCGCTAAACTCCCGGAGAAAAAACTAAACAGGACACCGGGAATG AGAGTTCCGAAAGAGTTGTGGTGCGTCTTGAAACCTCCTTATGGCCATAGACGACCCATCAAAACGTAAC CAGAAACACACACACGAGGAATCAAGCAGGACACTTTCACCACGATTACATCCGCTGTCAACCTAGCCTC CAACACCAATACAGTACCGGAGCACTCTTGATAACGGCGAATGGGTACCAGAATCTCTTCGACCCGAAGA AACCCTAAGCAACCACCACCATTACCGAACAAGCACGGGACACAGGATCTACAGCAGCGAACCACCACGA GCCCAGCCGTGACAAGACCCAGCGCTGTCACTCCACGACGACAAACACCGGAGAGATCCGAAGAGAGAAA AATGAATCACTCCAAAACCCAAAAAAACCGACTCTAAACCGCTCAGCCTCGCTGTACTCTCGCCGCAGGT CCGGAGAAGGAACCACCTCGACCAGAATCAGCTCCTCGCGACTGAAGCTTCCGCCAGTCTCTGCGAGCTC CATCCTAGAAACGCGAGCATATCGAGCAAAGGATGACAGATGCGATCGAGAGCAAAGGTGAAAACAAGGA AAGGGGAGAAGAGACCCCTCCGGCCCCGGCACTCGCGCGGACGCGCCGGCCGTACGCCGGAGGGTGAGAT GCACGCGTCTGTGTTGTTGTTTGTCGAGAGAGAGTTTGTCGGTAGAGGAGAGAGAGTTCCAACTAATTCT GATATCAGATCACATTCTGTTTTTTTTTGTCATAAGGAGTTTTAATTTCACTAGTAATTTGGATTAGTTT TGCATTTGTTCAAATTGGAATATACCTTTTTGTTTAAAATCAAGTTATGAATCATATTTGACAATTTCCT TAAAAAAGTTAGGTACAAAGGAATGTTTATGTTTCAATAAGAGATGTGAAACTTGCATTCTTTATTTATC CCAACATAAATCACTTAACTTTTGTCACATTTTCTAACGAGCATTGTAGTTTAAACTCTTTTGTGTTTCA AAAAACAAAACAAAAAAACAAAAACTCTTTGTACTATCTTAGTTTTAGTATACACTAACTAAGTGGTTCT TACATGTTGGATAAATATACTTGTTGAAGTACAAGAGTGTCTTTCTAACTCCATGATATGAAACTACAAA TACTCCACATATGACAGATGTGTGTGCAATGTTTTGCTCTTTAGGAAGAGAGTTTTCAAAAGTATGATCC CACTTAGCTGATTTTAGACTTAGCTCAAAGACTATTAACGTTCTTGGTTGTTTTCCTTAGTTTTTTTTTT AGGTTTAGAGTTTGCTATGGCTGATTACAAATTACTTTGCAAGCTCACTTCCTATTTTCATTCTTTTTAT TAGTCTGGTTTGCAGTAGATTTTTCCGTTTGATTTATCTTCAAAATCTTGTTTTTATACACTGCAAATCT TACATATGCATCGTTCTCTTCATCTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGATCT TTTTTTCAAATCATATATAATCTGATATTCGTTCCACTATAACATGAAGGATATTAATGACGTATGCAAC CTCTCTTGCACCAATATCAGCTTCACATGTCATAACTTCGGTATATCTTCGAGTCGGAACCACTATGCCA TCATTTTGTCTAAGTTGGTGATTTAACAGTGTTACTAGATCTTGACACGCGCAACCATGCGCGTTTTATT GTAAGTTTTATATGCATATATATATTTACTTTAGATAATTAGTGGTATACATTTTCAATTTTAATCATAT ACTTAAATGTTTTTATAACTATTTCAAATACAATAATTTATAGTTTACATGTTGTAAATAATTGATTGTT TAAAATCTTCACATGTATTTGTTGTTTTTATTATATATTTACCGTATTGTATTTGCATTTAATTATTAAA CAAAATAATATGTGCATGAAAAAAATCATCTTTGAAAATTATTTTGTATTTAATTTATGTTTTATTTTTA CCCCCCCCCCCCTCGAAATGGATTTCTTTTTTTGCAATATTTCTTACGTTTATTCATTTTACATAATATA TTATTGTATATACAAAAATCTAAGATATGTTAATTTTTAATCATGTATTATATAGTATGCTAATGTTAAG ACGTTATGTCATCATATTAGATTTTTAACATAAATATGAAAATAAAATTTATCAATTTAATATAATTTAT GATATTTAGTTCAATATAATAATTTAACATGATTGATTATGATTATAAAATAGATAAAGTAAGACATAAT TTCTATCTTTAATTTTATAAACAATAACTGAATATATATATATATTAATGCATAATAATAGTTCATTGCT AATTACGAAATTAGTGAAAATATTTATATAAACTTTTTGAAAATTAAGATATTGTTAAAATATTCAGATC AACATAATAAATTTTTTTAATATGATTGATTGTGATGATATAATAGATAAAAATATGATAAAATATTTAT TTTTCATTTTATAAACGATAACTGAATATATTAATGTATAATAATTTTGAAAATTAAGATTTTTTAAAAA TATTTTTAAACAGACTTTCAAAAATTTAATATATATATATATATGTATATATATATATTAAATGAAAAGA TATCAACAGATATTATGATTAAATTAGTTCAAAAATTTTATATATTATTAGTCCTATTAAAATACATATA ATCTGTTTTAAAAGATTAATTTTTTAACAAAATAAATTCTGAACGAAAAATATCATGGATAAATGTAGTT GCCGAAGTACAAGAGTGTCTTTCAACTCCATGATAGGGAACTACAAATACTCCACATATGACAGGTATGT GTGCAATGTTTCCTCTTTAGGAAGAGAGTTTTCTAGGATATGATTCCACTTTATAGCTGATTTTAGACTT AGCTCAAAGACTATTAATGTTCTTGGATGCTCGCCTTAGTCTTTTTAGGTTCAGAGTTTGTTGTGGCTGA TTACTAATTACTTTGCAAGTTTACTTCCTACTTGCATTCTTTTTATTAGTCTGGTTTGCAGTAGATTTTT TTCGTTTGATTTATCTTCAAAATCTTCTTTTTATACACTGCAAATCTTACATATACATCGTTCTCTTCGT CTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGAAATTTTTTAAAAATCATATATAATCC AATATCCGTTCCTCTATAACATGAAGGATATTAATGACGTATGCAGTCTCTCGTGCACCAATATCAGCTT CACATGTCATAACTTCGGTATATCTTCGAGTGGAACCACATGCCATCATTTTGTCTAAGTTGGTGATTTA ACAGTGTTATCCTTAAGAGTTAAAATGACAAGTTGTGTAAAAGAGGTGTGGATTTGCCAAATTATATAAT ACAATTCTACGGTTTTAGAATAAACTCGTTTAGTGAAATAATAATAATAATAATAATAATATTTTTTTAT GATCTAGTCTTATGTATTTGATCGCATACACAAAAACATAAAATTGTTTATAAGCTATTCGAATAAATTT TGATGTTTTTATATTTTTATATTCTCATTTCGGCAGATTTTTGGAGCAATCACAATTTCCTTCCTCTGAG ATAGGATAAATTTTAAAGTTCTGGCCGACTTAACAATGAACACATGATAAACACAAACAAATCAGATTCG AAGTTACGAGTGTACTTTGTGGTCTTTGAAGTGGTATCTACTTTCAGCAAATTCCTGGAGCAATATCTTT TAATGTTTTGGCTATCTAAACAATGAACACAATCCAATTTGAAAATTATCATTAGGCTTTTTTCGTGCTT GAATCTCAGCTTCTGTTTTTTTTCTCAGATCACTCAATGGCTAAAGATAGTTCACAAAAAATTGTGAGGG TATTTCGATTTAAAATTAGCTACGGCTGGTAAGAGATGACTGAGTTGGGCTGCATTTACCAAAGTCAAGA ACAAATCCATTGTGATTCTCATGCGGAGGTAGTCAGAGATAGTGCTCAAGAATGCACAACTTATCTGCCA AAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATT TTTGTTATAACTAAAAATGAAATTCAAATTTATAATTAAAATTGATTTGATATTAATATCTTTTTGATTA TTAATATTTTTTAAAATGTTATATATTTGATTGATTAATTTAAATAATCAAATATGTCATATTAATTAAT TAAATAGTTCTACTATGACTTGTCAACAATAGATAAAAATAGAAATTCTATTTAAGTGAAATAATAATAA TAATTTCTTTCATTTATGACTTATCAACAATAGATAAAAGGGCAATTCTCTCAAATAGATTTTTTTTTTT AATTTGTCACAAAAATAGACCCCAAAAACTAAAATGACAAAAATAGAATTTTTTATTTTAAAAATTTAAT TTTTTTTAATTTTTAAAATTTGAAATCTTATCCCCAAAACCCCACTCCTCAACTCTAAACTCTAAACCCT AAATCTTAAACCCTAAACTCCACTCCTTTACTTTAAACCCTAATGTCTAGATTAATTAACCCTAAGAGTA TAAGTGTATATTTACTTCTTTTGATAAAACATTTATAATTAATTAATTAATTAAATAGTAGATTCTTTAG AATTAAAATGACAAGGTGTAGAAAAAGGTAGAATCGCCAAGTTATATACTAATTCTATGTTTTTTTAGAA TAAACTCGTTTAGTGAAATAATAATAATAATTTCTTTCATTTATGATCCAGTCTTGTGTTTTGAGCGCAT ACACAAAAACAAAAAAATTGCTCATGAACTACTCAAATAGATTTTGATGTCTTTTTTTTTTTTTTTGCTA AATAGATTTTGATGTTTTTATATTTTTATATTCTTTTATAAATGCTCTGACGCATAAATCCGGTGTTCAT GAGTTTAGTTTAGGGCCAGCTGATTTTATCTGCAAGAAGAATTATTTTGGAGCTATATATTTGGTAACTG TGAAATACGATTTAGATGGTTATCTCACAACTCAAATATAACAAATTTGACCTACCATCTAGATGATTAT TACATGATGCTTAAAATGAAGTATATTTGATTGTTAGACGTCACATTAATATCACCCCTAAACTTTAAAA AGATTAGATACTTTCTTAATTTGATTAACATTTACAGAGCAAGAGACATGTCCATATATCACTGTCACTT AGTGAGCTGGAGAGGAAAGGAGCAGCAACCTGACGAGGACTTTTCCTAAACACATAATCTAAGCTTTACA GATCCACACATCACTCATGATGAGCTGGAGACGAAAGGCACGCATTAGTGGCAGTGACCAGAAGGACCCG TGTTCGAACTCCCTCAAAATAAACATCGTTTCTTTGTTACTTTCTCGACAACATCTCGAGATCTGAAACC TGATCCCTACCTTTTTCATTTCCCCTTCTCAAAAGTCGCGGCCTTTGAATAGTGTTCCTCTCTCATCAAA TCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAGCTTTCTT CTTTCTTTCTTTTTTTAATCCCTTCCAGCTAGTAATACCGTAGTAGGTAACTTTTGGGTGGTCTTACTTG CTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCTCAGAAGCTTATATG GGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCTCTTGCTGAAGACGAAGCAATG TGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGTACTTGGAGGACTCAAGA TGATTGACCAGTTCATCAACTTTGTTATTCGCCCTCCCAGGTACCTTTTGCTTCTCTAAAGTCTCAACCT TTTCTTGCATTCAACTGATTGGTAGCTGTTGGAACAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGA GAAGGACTTTAGCATCGGTGGCACAAAGTGTAAAAGGCAAGACTTGGAGGCAAGTATGATGTGCAAAACC AGTTACTGTTCTCTTCAATTAGTGGTTTCCTCATGTGGCTAATCTTAAAGGTCTTATGTTTTTTCTCTGA AGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAA TACTACTCCTCTTCCTTGCGTTATATACTGCCATGGTAATAGGTACATAACTAAAGACTTTGCACACTCC TCTTCTTGGGAATGAATATTTGATGAATAAGAACTTCCATTTGATCAGTGGATGTAGGGCAGATGCAAAT GAGGCAGCAATGGTTCTTCTTCCATCTAACATTACTGTTTTCACACTTGACTTCTCCGGTTCTGGCTTAT CTGATGGTGATTATGTTAGCCTTGGCTGGCATGAGGTGTGTTTTCCTTGTTCTTACTTACTTCCATAGCC TTCTCTTTCTCTTCCAAATAGTTACACTAACCTTTTGCCTGTTAAACTTAAGCTAGAAAGATGATCTCAA GACTGTGGTTTCTTACCTGAGAAGCAGCAATCAGGTGTCTCGTATTGGACTTTGGGGACGGTCTATGGGT GCAGTTACCAGGTTACTTCTTGAACTAGCTCTTAATGTCTCATCAGCTTTCTTAATGTCTGTGATCTGGA ATGTGTTCCTTGTGTGGCTCTCTTCATCATTTAATGAAGTTGTTAATGAAATGTGCAGCCTTCTCTATGG AGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACAGTGCATTCTCAAACTTATTTGATCTTATGATG GAACTAGTGGATGTTTACAAGATCAGACTTCCTAAATTCACAGTATGCTCTCTTTTTCCCCCAAGTCATA TTCTTCATTGCTTATATCTTCACATGGCTACAAGAGTCCAAGAAGATAGTTCCCTCTCTTATCCCTTCCA ATGATGATAGCATACTGTAGACATTCTGAAACTCTTATCTCACTTTTCAATCAGGTTAAAGTGGCTGTAC AGTACATGCGGCGAGTAATTCAGAAAAAGGCCAAGTTTAATATCATGGATCTCAATTGTCTCAAGGTGTT ATTTAGTTACCTCTTTCTATATTCTTATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATT TCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGCGGAGACAAATTC ATCCAACCTCATCACTCTGACCACATTCTCAAGTGCTATGCGGTTAGATCAAAGTTGCTATCTTTTTTGC ATTCATGTCAGTGTTGTTTTTAATGTTATGTAGTAATCTTATAATGCAGGGAGACAAAAACATCATCAAG TTTGATGGTGATCACAACTCCTCACGGCCGCAGTTTTATTATGATTCAGTGTTAATATTCTTCTACAATG TTCTACGCCCGCCTCAAGTTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATAGCGCTGCTGGTTTGGA CGAGGTAGTTTGCACTCCTCCTCTGGATCAAGCAATCCAAATATCATGTCTGTTTATATGTCTACACTTA GATAGTATATAAACATAAAGATCTTGCCTAGACATTCTACTCGAGTCACTTACAAGGTAGCTCAAAATAG ATGAGGGTTAAGAACTTGTGGTCACACAGCATTATGGATTAATCTCAATTACAGTTAGCATGGTGAAATA TGATGCACATGAATCTAACTGCTTGGTTTTTCCTTGTACTGCCAGAATTTTCTGTATGAGATCATCTCTG GGCTTCGTTCGGCATGTATCGATGTTGCAAGTTCTTCTTCTTCTGCACCTCCTGCCTCTCTAACAACAAA GCCAACAAATGAGCTCATCTCAGAAGCCATGCCCATTATGGATACTGTATATTTTCTGTTGCATGAATTT TTATTTTCTTTTGCTTTGATTATTCCTTTTGATAAATCAAATCATTAATGAAACAGGATGACTTGCTTGT AGCAGACAATGATCAGAACATTGATGAACCTGAGGTAACTGGAGCATGTGGAAACACACAATTAATATAT ATATATATATATGATGACTTAGAGCTCCTTTTAAATGGAGTCCCTCAAGTGTTAGCCTTTATGAACCTTG CTGACATTATAGGTTTTGACTGTTGTTATTTGGCAGGGGATGCCTATTGATCAGTTTGAAGAAGGATGTT CATTCACAAGCTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAG CTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCT GATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAACACAGAACAGAAGCCAATAGAGTCCACTAGA CAACAAGAAGAAGAAGAAAAAGAAGAGAGGAAGGAGAAGAAAATGAAGAAAGGAGTTGAAACAGATGCAA AGAAGCCTAAACGAGAGAAACTGGAAAGGTTAGAGGCTTTCAGCAAAAGACTCAGGCTTGGCATCATAAA GCGAGTAAACCATGGAAGACACCGTTCTTCGCAACCTTAACAACAAAGTTCAACAAAATACTCTAAATTT GTTATATATGTTCTCTGCATCTTGCCATGTACACATGCAGCAAATCAAATATGTACTACCGTATCGATTG TCATTGCAAATGGACTACATTCCTAATCATATCCTTAGATAATCAAACACACTTCTTTTAGATAAATTAA TAATCCGTCCCGAGCTTCACCAGAACACAAGTCACCAAATCGAAAATAAAATGGATTTACAACAGTAGAA AAAAGAATCACAGAAGTTTTTGTTCACATCATTATGTGATGATTGTTTTATACGTGATGATATAGACACA CCATTATTAATAGATTAGCCGCAGCAACCTCCTTGCGGTGT From adsj at novozymes.com Tue Jun 1 09:42:02 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Tue, 01 Jun 2010 15:42:02 +0200 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: (Chris Fields's message of "Wed, 26 May 2010 06:53:50 -0500") References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> Message-ID: <87eigqj2dx.fsf@topper.koldfront.dk> Ok, so coming back to the reason for the changes in my fork?. It has been a while (the test in the application I am working on is from August 2007, so I have been using/carrying the patch for three years?), so I have to dig a little before it comes back to me. Basically, I would like to make a class that inherits from Bio::Seq::RichSeq and extends it. When I call ->seq on features on my modules, I'd like to get an object of my own type back. That sounds a little convoluted, so let me illustrate my thinking with a self-contained script you can run: = = = #!/usr/bin/perl use strict; use warnings; use Bio::SeqFeature::Generic; my $seq=MySeq->new(-seq=>'actg'); $seq->extra_method; print "len: " . length($seq->seq) . "\n"; my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); $new_feature->add_tag_value(note=>'test'); $seq->add_SeqFeature($new_feature); foreach my $feature ($seq->get_SeqFeatures) { my $obj=$feature->seq; print ref($obj) . "len: " . length($obj->seq); print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; $obj->extra_method; } exit 0; package MySeq; use base qw(Bio::Seq::RichSeq); sub extra_accessor { # ... } sub extra_method { # ... print "extra_method called\n"; } # ... 1; = = = The output I expect (what my changes give rise to) is: extra_method called len: 4 MySeqlen: 2 OK extra_method called But the output I get is: extra_method called len: 4 Bio::PrimarySeqlen: 2 FAIL Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. That is what the changes on my fork try to address. If there is a better way to accomplish the same result, I'd be flowing over with joy :-) Best regards, Adam ? http://github.com/adsj/bioperl-live - this commit in particular: - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 ? There actually was a little discussion about this, way back, on this list: * Thread start, Oct 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 * Patch as per suggestions from Hilmar Lapp, Nov 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 -- Adam Sj?gren adsj at novozymes.com From maj at fortinbras.us Tue Jun 1 12:36:00 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Tue, 1 Jun 2010 12:36:00 -0400 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation In-Reply-To: <1275379428.24468.20.camel@lafs-746g12s> References: <1275379428.24468.20.camel@lafs-746g12s> Message-ID: <3666E24BF5BC4A17935800B99A2C1C4A@NewLife> Thanks Jiri, I've created a bug report and assigned it to myself. See http://bugzilla.open-bio.org/show_bug.cgi?id=3088 cheers, Mark ----- Original Message ----- From: "Jiri Stiller" To: Sent: Tuesday, June 01, 2010 4:03 AM Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation > Hi, > I am trying to process bam file using Bio::Assembly::IO. I attached test > script and output. > When I am retrieving contigs I get correct contig number and position > but contig objects build from reads of different orientation don't > contain any read sequences. Contigs built from the reads of the same > orientations are fine. > > Your help/advice would be greatly appreciated. > > Cheers, > > -- > Jiri Stiller > Senior Bioinformatics Researcher > Australian Centre for Plant Functional Genomics > School of Land, Crop and Food Sciences > University of Queensland > Brisbane QLD 4072 > > j.stiller at uq.edu.au > Phone: +61 (0)7 3346 7082 > Mobile: +61 (0) 422 941 581 > Fax: +61 (0)7 3365 1177 > > > -------------------------------------------------------------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Tue Jun 1 13:38:46 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 12:38:46 -0500 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: <87eigqj2dx.fsf@topper.koldfront.dk> References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> <87eigqj2dx.fsf@topper.koldfront.dk> Message-ID: <17457107-2C9F-4F07-9BD5-EEA17F2F4901@illinois.edu> On Jun 1, 2010, at 8:42 AM, Adam Sj?gren wrote: > Ok, so coming back to the reason for the changes in my fork?. > > It has been a while (the test in the application I am working on is from > August 2007, so I have been using/carrying the patch for three years?), > so I have to dig a little before it comes back to me. > > Basically, I would like to make a class that inherits from > Bio::Seq::RichSeq and extends it. When I call ->seq on features on my > modules, I'd like to get an object of my own type back. > > That sounds a little convoluted, so let me illustrate my thinking with a > self-contained script you can run: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use Bio::SeqFeature::Generic; > > my $seq=MySeq->new(-seq=>'actg'); > $seq->extra_method; > print "len: " . length($seq->seq) . "\n"; > > my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); > $new_feature->add_tag_value(note=>'test'); > $seq->add_SeqFeature($new_feature); > > foreach my $feature ($seq->get_SeqFeatures) { > my $obj=$feature->seq; > print ref($obj) . "len: " . length($obj->seq); > print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; > $obj->extra_method; > } > > exit 0; > > package MySeq; > > use base qw(Bio::Seq::RichSeq); > > sub extra_accessor { > # ... > } > > sub extra_method { > # ... > print "extra_method called\n"; > } > > # ... > > 1; > = = = > > The output I expect (what my changes give rise to) is: > > extra_method called > len: 4 > MySeqlen: 2 OK > extra_method called > > But the output I get is: > > extra_method called > len: 4 > Bio::PrimarySeqlen: 2 FAIL > Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. > > That is what the changes on my fork try to address. > > If there is a better way to accomplish the same result, I'd be flowing > over with joy :-) > > > Best regards, > > Adam > > > ? http://github.com/adsj/bioperl-live - this commit in particular: > - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 > > ? There actually was a little discussion about this, way back, on this > list: > > * Thread start, Oct 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 > * Patch as per suggestions from Hilmar Lapp, Nov 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 > > -- > Adam Sj?gren > adsj at novozymes.com This is where some of the confusion lies: Bio::Seq is both a Bio::SeqI and a Bio::PrimarySeqI. This inheritance just indicates Bio::Seq fulfills both interface methods, but note that the way this is done (regarding PrimarySeqI) is the methods delegate to a PrimarySeqI (normally a simple Bio::PrimarySeq) contained within Bio::Seq. A Bio::Seq's contained SeqFeatures are attached to this, not to the Bio::Seq itself, for a very good reason: no circular references (so no need for Scalar::Util::weaken). If you are subclassing MySeq from Bio::Seq (or RichSeq in this case), maybe the way to go is to subclass a similar MyPrimarySeq class that does what you need, bless any data from the MySeq constructor into the new MyPrimarySeq, then add methods that delegate to that within MySeq. Does that make sense? chris From robfsouza at gmail.com Tue Jun 1 16:23:41 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 16:23:41 -0400 Subject: [Bioperl-l] blastxml to table Message-ID: Hello! I'm trying to convert BLAST XML output to a BLAST table which should be identical to a BLAST output generated using "-m 8". In the script below, if $type is "BLAST", the script works if $writer is TextResultWriter but when I try to generate BLAST compatible (i.e. like "-m 8") tables using $writer = "HSPTableWriter" it fails with the message Using default column map. ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't locate object method "iteration" via package "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. STACK: Error::throw STACK: Bio::Root::Root::throw /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 STACK: try{} block /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 STACK: Bio::SearchIO::write_result /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 ----------------------------------------------------------- Is there a way to fix this? Or should I use another approach to get "-m 8" compatible tables? Thanks, Robson #!/usr/bin/env perl #==================== use strict; use warnings; use Bio::SearchIO; use Getopt::Long; my $writer = "TextResultWriter"; my $type = "PSIBLAST"; GetOptions("w=s"=>\$writer, "t=s" => \$type); # Load writer use Module::Load; my $writer = "Bio::SearchIO::Writer::".$writer; load $writer; $writer = $writer->new(); # Open and convert input my $out = Bio::SearchIO->new(-writer => $writer); foreach my $file (@ARGV) { my $in = Bio::SearchIO->new(-format => "blastxml", -file => "<$file"); $in->blasttype($type); while( my $r = $in->next_result) { $out->write_result($r); } } exit 0; From cjfields at illinois.edu Tue Jun 1 17:47:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 16:47:48 -0500 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. Can you report this? I can't get to it (going out of town until Friday). chris On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > Hello! > > I'm trying to convert BLAST XML output to a BLAST table which should > be identical to a BLAST output generated using "-m 8". > In the script below, if $type is "BLAST", the script works if $writer > is TextResultWriter but when I try to generate BLAST compatible (i.e. > like "-m 8") tables using $writer = "HSPTableWriter" it fails with the > message > > Using default column map. > > ------------- EXCEPTION: Bio::Root::Exception ------------- > MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't > locate object method "iteration" via package > "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. > > STACK: Error::throw > STACK: Bio::Root::Root::throw > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 > STACK: try{} block > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 > STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 > STACK: Bio::SearchIO::write_result > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 > STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 > ----------------------------------------------------------- > > Is there a way to fix this? Or should I use another approach to get > "-m 8" compatible tables? > Thanks, > Robson > > #!/usr/bin/env perl > #==================== > > use strict; > use warnings; > use Bio::SearchIO; > use Getopt::Long; > > my $writer = "TextResultWriter"; > my $type = "PSIBLAST"; > GetOptions("w=s"=>\$writer, > "t=s" => \$type); > > # Load writer > use Module::Load; > my $writer = "Bio::SearchIO::Writer::".$writer; > load $writer; > $writer = $writer->new(); > > # Open and convert input > my $out = Bio::SearchIO->new(-writer => $writer); > foreach my $file (@ARGV) { > my $in = Bio::SearchIO->new(-format => "blastxml", > -file => "<$file"); > $in->blasttype($type); > while( my $r = $in->next_result) { > $out->write_result($r); > } > } > > exit 0; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From robfsouza at gmail.com Tue Jun 1 19:16:04 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 19:16:04 -0400 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: Hi Chris, just submitted the problem to Bugzilla (Bug 3089). Robson On Tue, Jun 1, 2010 at 5:47 PM, Chris Fields wrote: > That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. ?Can you report this? ?I can't get to it (going out of town until Friday). > > chris > > On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > >> Hello! >> >> I'm trying to convert BLAST XML output to a BLAST table which should >> be identical to a BLAST output generated using "-m 8". >> In the script below, if $type is "BLAST", the script works if $writer >> is TextResultWriter but when I try to generate BLAST compatible (i.e. >> like "-m 8") tables using $writer = "HSPTableWriter" it fails with the >> message >> >> Using default column map. >> >> ------------- EXCEPTION: Bio::Root::Exception ------------- >> MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't >> locate object method "iteration" via package >> "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. >> >> STACK: Error::throw >> STACK: Bio::Root::Root::throw >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 >> STACK: try{} block >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 >> STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 >> STACK: Bio::SearchIO::write_result >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 >> STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 >> ----------------------------------------------------------- >> >> Is there a way to fix this? Or should I use another approach to get >> "-m 8" compatible tables? >> Thanks, >> Robson >> >> #!/usr/bin/env perl >> #==================== >> >> use strict; >> use warnings; >> use Bio::SearchIO; >> use Getopt::Long; >> >> my $writer = "TextResultWriter"; >> my $type = "PSIBLAST"; >> GetOptions("w=s"=>\$writer, >> ? ? ? ? ? ? ? ? "t=s" => \$type); >> >> # Load writer >> use Module::Load; >> my $writer = "Bio::SearchIO::Writer::".$writer; >> load $writer; >> $writer = $writer->new(); >> >> # Open and convert input >> my $out = Bio::SearchIO->new(-writer => $writer); >> foreach my $file (@ARGV) { >> ? my $in = Bio::SearchIO->new(-format => "blastxml", >> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -file ? => "<$file"); >> ? $in->blasttype($type); >> ? while( my $r = $in->next_result) { >> ? ? ? $out->write_result($r); >> ? } >> } >> >> exit 0; >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From dimitark at bii.a-star.edu.sg Wed Jun 2 00:34:22 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Wed, 02 Jun 2010 12:34:22 +0800 Subject: [Bioperl-l] general perl question Message-ID: <4C05DF4E.2090507@bii.a-star.edu.sg> Hi guys, firstly i am sorry ive sent this email first to the wrong email(bioperl-l-request at lists.open-bio.org). Secondly, i am sorry to bother you with such problem but i do not know how to google that one :) Here is the problem. I want to start several simultaneous processes through my script but i found i cant do that unless i start them as background processes because otherwise 'system' waits for the process to exit. Now i use something like this: my @args=("$program $seqinput $$specname $eval &"); system(@args) == 0 or die "system @args failed: $!"; But that is a bit weird when i want to terminate the program then all the processes are still running and i have to kill them manually. Is there a way to start several simultaneous processes without '&'? Thank you for your patience and help Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Wed Jun 2 01:00:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 2 Jun 2010 17:00:33 +1200 Subject: [Bioperl-l] general perl question In-Reply-To: <4C05DF4E.2090507@bii.a-star.edu.sg> References: <4C05DF4E.2090507@bii.a-star.edu.sg> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B66A8@exchsth.agresearch.co.nz> It's not really a BioPerl question, more one of reading the Perl documentation. There's several ways of executing commands from Perl: * The exec() function executes a system command and never returns * system() exactly the same thing as exec(), except that a fork is done first, and the parent process waits for the child process to exit * backticks Eg. $date=`/usr/bin/date`; * open() and parse Eg. open PS, "/usr/bin/ps -ef |"; Up to you which you use, --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dimitar Kenanov > Sent: Wednesday, 2 June 2010 4:34 p.m. > To: 'bioperl-l at bioperl.org' > Subject: [Bioperl-l] general perl question > > Hi guys, > firstly i am sorry ive sent this email first to the wrong > email(bioperl-l-request at lists.open-bio.org). > > Secondly, i am sorry to bother you with such problem but i do not know > how to google that one :) > Here is the problem. I want to start several simultaneous processes > through my script but i found i cant do that unless i start them as > background processes because otherwise 'system' waits for the process to > exit. Now i use something like this: > > my @args=("$program $seqinput $$specname $eval &"); > system(@args) == 0 or die "system @args failed: $!"; > > But that is a bit weird when i want to terminate the program then all > the processes are still running and i have to kill them manually. > > Is there a way to start several simultaneous processes without '&'? > > Thank you for your patience and help > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From staffa at niehs.nih.gov Wed Jun 2 16:32:59 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Wed, 2 Jun 2010 16:32:59 -0400 Subject: [Bioperl-l] rebase file withrefm Message-ID: Could someone please tell me where in a normal bioperl installation the rebase file withrefm downlaoded from NEB goes. Thank You Nick Staffa Telephone: 919-316-4569 (NIEHS: 6-4569) Scientific Computing Support Group NIEHS Enterprise-Wide Information Technology Support Contract National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park, North Carolina From pengyu.ut at gmail.com Wed Jun 2 17:35:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 2 Jun 2010 16:35:13 -0500 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? Message-ID: Hi, I'm interested in query some keywords and retrieve the results automatically. For example, I go to the above webpage and query BIC. Then I get 1167 results. http://www.ncbi.nlm.nih.gov/sites/entrez I'm wondering if there is any tool in bioperl to help me retrieve query results. In particular, I also want to retrieve the MeSH terms, links to the papers, paper titles and abstracts. Would you please point me what tool I should use? -- Regards, Peng From florent.angly at gmail.com Wed Jun 2 19:27:58 2010 From: florent.angly at gmail.com (Florent Angly) Date: Thu, 03 Jun 2010 09:27:58 +1000 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? In-Reply-To: References: Message-ID: <4C06E8FE.30106@gmail.com> Hi Peng, I think you could do all of this with Bio::DB::EUtilities See http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook Florent On 03/06/10 07:35, Peng Yu wrote: > Hi, > > I'm interested in query some keywords and retrieve the results automatically. > > For example, I go to the above webpage and query BIC. Then I get 1167 > results. > > http://www.ncbi.nlm.nih.gov/sites/entrez > > I'm wondering if there is any tool in bioperl to help me retrieve > query results. In particular, I also want to retrieve the MeSH terms, > links > to the papers, paper titles and abstracts. Would you please point me > what tool I should use? > > From dimitark at bii.a-star.edu.sg Wed Jun 2 23:15:36 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Thu, 03 Jun 2010 11:15:36 +0800 Subject: [Bioperl-l] BlastPlusMethods Message-ID: <4C071E58.3070008@bii.a-star.edu.sg> Hi guys, i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize the psiblast(and most probably rps and rpst) result and therefore doesnt parse it. The problem was in the 'run' method where the match doesnt match properly: ------ m/^[t]?blast[npx]/ && do { ------- So i modified it pretty ugly into the following but now it works for me: ------ m/^(t|psi|rps|rpst)?blast[npx]?/ && do { ------ I dont know if it may be more beautiful but i suppose it could :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From maj at fortinbras.us Thu Jun 3 12:29:31 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Thu, 3 Jun 2010 12:29:31 -0400 Subject: [Bioperl-l] BlastPlusMethods In-Reply-To: <4C071E58.3070008@bii.a-star.edu.sg> References: <4C071E58.3070008@bii.a-star.edu.sg> Message-ID: Hey Dimitar, Beauty is in the eye of the beholder. Looks beautiful (since it works) to me. Can you do a git pull request on this? The guys who understand those things can then pull it in-- Thanks Mark ----- Original Message ----- From: "Dimitar Kenanov" To: Sent: Wednesday, June 02, 2010 11:15 PM Subject: [Bioperl-l] BlastPlusMethods > Hi guys, > i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize > the psiblast(and most probably rps and rpst) result and therefore doesnt parse > it. The problem was in the 'run' method where the match doesnt match properly: > ------ > m/^[t]?blast[npx]/ && do { > ------- > > So i modified it pretty ugly into the following but now it works for me: > ------ > m/^(t|psi|rps|rpst)?blast[npx]?/ && do { > ------ > I dont know if it may be more beautiful but i suppose it could :) > > Cheers > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From David.Messina at sbc.su.se Thu Jun 3 13:45:19 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 19:45:19 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From staffa at niehs.nih.gov Thu Jun 3 13:59:20 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 13:59:20 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Message-ID: I was thinking about where the default restriction information is kept. I remember trying to use the withrefm file in the manner outlined below, and it didn't work. I did not know about File::Temp. I must find out about this. On 6/3/10 1:45 PM, "Dave Messina" wrote: Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From David.Messina at sbc.su.se Thu Jun 3 14:14:55 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 20:14:55 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From staffa at niehs.nih.gov Thu Jun 3 14:17:42 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 14:17:42 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> Message-ID: Thanks Muchly. I'll give it a try. On 6/3/10 2:14 PM, "Dave Messina" wrote: > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From gopal.cshl at gmail.com Fri Jun 4 07:23:59 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 07:23:59 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast Message-ID: Hi, I am trying to run standalone blast and parse the files, both using BioPerl. When running a moderately big file, I keep getting this message: "Error in tempfile() using /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not create temp file /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. please help me how to fix this problem, thanks, -gopal From pengyu.ut at gmail.com Fri Jun 4 10:47:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 09:47:13 -0500 Subject: [Bioperl-l] How to print get_available_databases? Message-ID: Hi, I want to print get_available_databases using foreach. But it prints all 1's. I know that this is a perl question. But I still ask it here because people on a more general perl mailing may not have bioperl installed. use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar',); print $factory->get_available_databases, "\n"; print "available databases: \n\t", join("\n\t",$factory->get_available_databases),"\n"; foreach($factory->get_available_databases) { print print "\n"; } -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 11:10:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:10:48 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: You should post code examples that cause the problem (the more concise the better). My guess is you are somehow caching the files by persisting the SearchIO instances; files for these are normally cleaned up when the SearchIO instance is destroyed. If needed you can also call cleanup() from the standaloneblast instance to clean them up manually. chris On Jun 4, 2010, at 6:23 AM, Gopal wrote: > Hi, > > I am trying to run standalone blast and parse the files, both using BioPerl. > > When running a moderately big file, I keep getting this message: > > "Error in tempfile() using > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > create temp file > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > please help me how to fix this problem, > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 4 11:14:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:14:08 -0500 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <8F4443A9-6517-400F-AA9E-B00F511CC600@illinois.edu> On Jun 4, 2010, at 9:47 AM, Peng Yu wrote: > Hi, > > I want to print get_available_databases using foreach. But it prints > all 1's. I know that this is a perl question. But I still ask it here > because people on a more general perl mailing may not have bioperl > installed. > > ... > foreach($factory->get_available_databases) { > print > print "\n"; > } > > > -- > Regards, > Peng You are missing a semicolon: foreach($factory->get_available_databases) { print; print "\n"; } Without it, the first print() prints the results of the second print() (which prints the newline), which evals to success, or 1. chris From asidhu at biomap.org Fri Jun 4 11:33:44 2010 From: asidhu at biomap.org (Amandeep Sidhu) Date: Fri, 4 Jun 2010 23:33:44 +0800 Subject: [Bioperl-l] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010) Message-ID: IEEE CBMS 2010 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 Perth, Australia, 12-15 October 2010 http://www.cbms2010.curtin.edu.au/ The 23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS 2010) is intended to provide an international forum for discussing the latest results in the field of computational medicine. The scientific program of CBMS 2010 will consist of invited keynote talks given by leading scientists in the field, and regular and special track sessions that cover a broad array of issues which relate computing to medicine. RELEVANT TOPICS Network and Telemedicine Systems Medical Databases & Information Systems Computer-Aided Diagnosis Medical Devices with Embedded Computers Bioinformatics in Medicine Software Systems in Medicine Pervasive Health Systems and Services Web-based Delivery of Medical Information Medical Image Segmentation & Compression Content Analysis of Biomedical Image Data Knowledge-Based & Decision Support Systems Hand-held Computing Applications in Medicine Knowledge Discovery & Data Mining Signal and Image Processing in Medicine Multimedia Biomedical Databases CBMS 2010 invites original previously unpublished contributions that are not submitted concurrently to a journal or another conference. Many of the above listed topics are represented by corresponding Special Tracks, while others are solely covered by the general CBMS track. Prospective authors are expected to submit their contributions to one of the corresponding Special Tracks or to the general track if none of the special tracks is relevant. SPECIAL TRACKS ST1: Computational Proteomics and Genomics ST2: Knowledge Discovery and Decision Systems in Biomedicine ST3: Ontologies for Biomedical Systems ST4: HealthGrid & Cloud Computing ST5: Technology Enhanced Learning in Medical Education ST6: Intelligent Patient Management ST7: Data Streams in Healthcare ST8: Supporting Collaboration among Healthcare Workers ST9: Telemedicine ST10: Computer-Based Systems for Mental Health ST11: Image Informatics in Biomedical Research and Clinical Medicine ST12: e-Health SUBMISSION GUIDELINES Papers should be submitted electronically using EasyChair online submission system. The papers must be prepared following the IEEE two-column format and should not exceed the length of 6 (six) Letter-sized pages. LaTeX or Microsoft Word templates can be used when preparing the papers. Please, note that only PDF format of submissions is allowed. Submission web site: http://www.easychair.org/conferences/?conf=cbms2010 All submissions will be peer-reviewed by at least three reviewers. The proceedings will be published by the IEEE Computer Society Press. At least one of the authors of accepted papers is required to register and present the work at the conference; otherwise their papers will be removed from the digital library after the conference. IMPORTANT DATES Submission deadline for regular papers: 24 June 2010 Deadline for tutorial submission: 24 June 2010 Notification of acceptation for papers and tutorials: 2 Aug 2010 Final camera ready due: 2 Sep 2010 Author registration: 2 Sep 2010 INTENDED AUDIENCE Engineers, scientists, clinicians and managers involved in medical computing projects are encouraged to submit papers to the symposium and/or attend the symposium. The symposium provides its attendees with an opportunity to experience state-of-the-art research and development in a variety of topics directly and indirectly related to their own work. In addition to research papers, keynote speakers and tutorial sessions it provides participants with an opportunity to come up-to-date on important technological issues. The symposium encourages the participation of students engaged in research/development in computer-based medical systems. Organizing Committee GENERAL CHAIRS Tharam Dillon, Curtin University of Technology, Australia Daniel Rubin, National Center for Biomedical Ontologies, USA William Gallagher, University College Dublin, Ireland PROGRAM CHAIRS Amandeep Sidhu, Curtin University of Technology, Australia Alexey Tsymbal, Siemens, Germany PUBLICATION CHAIRS Mykola Pechenizkiy, Eindhoven University of Technology, Netherlands Tony Hu, Drexel University, USA SPECIAL TRACK CHAIRS Maja Hadzic, Curtin University of Technology, Australia Jake Chen, Indiana University, USA TUTORIAL CHAIRS Phoebe Chen, La Trobe University, Australia Xiaofang Zhou, University of Queensland, Australia PUBLICITY CHAIRS Carolyn McGregor, University of Ontario Institute of Technology, Canada Meifania Chen, Curtin University of Technology, Australia From David.Messina at sbc.su.se Fri Jun 4 11:39:44 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 4 Jun 2010 17:39:44 +0200 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <1402B6DE-5EB6-4436-B139-704C7DA66F1C@sbc.su.se> Hi Peng, In your code > foreach($factory->get_available_databases) { > print > print "\n"; > } > You're not printing anything that's coming from get_available_databases. You say print print Which means print the return value from the print command, which is true, or in other words, '1'. Not what you want. Here you have encountered the peril of implicit variables. When you write a foreach loop, the idea is to put a name on each item, one after the other, from an array of items. So it's good idea to be explicit about what that name is. For example: foreach my $database ($factory->get_available_databases) { print $database, "\n"; } In this way it's much clearer what you are doing (and it actually works! :) ). Dave From gopal.cshl at gmail.com Fri Jun 4 11:45:03 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 11:45:03 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: Hi Chris, this is the code. Sorry I did not realize I should post the code: my @params = ( program => 'blastp', database => '/Users/XXX/Desktop/genomes/BAA/all.faa'); my $blast_obj = Bio::Tools::Run::StandAloneBlast->new(@params); my $in= $ARGV[0]; print "Query_name\t". "Hit name\t" ."Hit description\t" ."Hit length\t" . "percent_identity\t" . "start('hit')\t" ."end('hit')\t" ."start('query')\t" . "start('query')\n"; my $seqio_obj = Bio::SeqIO->new(-file=> '2cs2151.fasta', '-format' => 'Fasta'); #print $seq_in->name."\n"; my @seq_array =(); my $seqc=1; my $blast_report; my @reports; my @hits; while( my $input = $seqio_obj->next_seq() ) { # $blast_report = $blast_obj->blastall($input); push(@reports,$blast_report); } foreach(@reports){ #print $_->next_result->num_hits."xxx\n"; while(my $result=$_->next_result){ #if($result->num_hits){ my @stats = $result->available_statistics; my @params = $result->available_parameters; while(my $hit= $result->next_hit){ while ( my $hsp = $hit->next_hsp ) { if ($hsp->percent_identity >=90){ my $id = $hit->matches('id'); my $cons = $hit->matches('cons'); my @accs = $hit->each_accession_number; my @qidentical = $hit->seq_inds('query','identical'); my @qconserved = $hit->seq_inds('query','conserved'); my @hidentical = $hit->seq_inds('hit','identical'); my @hconserved = $hit->seq_inds('hit','conserved'); #loop 2b stuff removed from here print $result->query_name. "\t"; my $name= fix_name($hit->name); print $name . "\t"; #print "Hit\taccession\t" . $hit->accession . "\n"; if($hit->description=~/.+(.ESA.+\d+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+\w)\s*\[.+turicensis.+/){ print $1." [ct3032]"."\t"; }else{ print $hit->description . "\t"; } print $hit->length . "\t"; my @hrange = $hsp->range('hit'); my @qrange = $hsp->range('query'); my $aln = $hsp->get_aln; my $alnIO = Bio::AlignIO->new(-format=>"clustalw"); my $p=sprintf("%.1f", $hsp->percent_identity); print $p. "\t"; # print "HSP\tstrand()\t" . $hsp->strand() . "\n"; print $hsp->start('hit') . "\t"; print $hsp->end('hit') . "\t"; print $hsp->start('query') . "\t"; print $hsp->end('query') . "\n"; # print "HSP\talignment\n"; # print $alnIO->write_aln($aln); } } } #} } } On Fri, Jun 4, 2010 at 11:10 AM, Chris Fields wrote: > You should post code examples that cause the problem (the more concise the > better). My guess is you are somehow caching the files by persisting the > SearchIO instances; files for these are normally cleaned up when the > SearchIO instance is destroyed. > > If needed you can also call cleanup() from the standaloneblast instance to > clean them up manually. > > chris > > > On Jun 4, 2010, at 6:23 AM, Gopal wrote: > > > Hi, > > > > I am trying to run standalone blast and parse the files, both using > BioPerl. > > > > When running a moderately big file, I keep getting this message: > > > > "Error in tempfile() using > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > > create temp file > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many > open > > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > > > please help me how to fix this problem, > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From jessica.sun at gmail.com Fri Jun 4 12:03:06 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 4 Jun 2010 12:03:06 -0400 Subject: [Bioperl-l] Highlighted short sequences Message-ID: Does any one know if there is any existing function of bioperl that can locate and highlighted short stretch of nt sequences within long genomic sequences ? Thanks in advance. -- Jessica Jingping Sun From pengyu.ut at gmail.com Fri Jun 4 12:15:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:15:10 -0500 Subject: [Bioperl-l] The usage of $field->$_ Message-ID: In the Eutilities cookbook, http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook I see the following code, print join(',', grep {$field->$_} qw(is_date is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; I'm not quite familiar with the usage of $field->$_. I don't see where it is covered in man perlvar (I don't the usage of $_ for pattern matching, but not in $variable->$). Would you please let me know where is the document that explain this usage? -- Regards, Peng From pengyu.ut at gmail.com Fri Jun 4 12:33:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:33:10 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? Message-ID: Hi, It seems that term_count is not available for einfo. $ ./main.pl Can't locate object method "term_count" via package "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. $ vim ./main.pl pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ cat ./main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar', -db => 'pubmed'); while (my $field = $factory->next_FieldInfo) { print "term_count: ",$field->term_count,"\n"; } But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' doesn't say so. Could you let me know where to find which methods are available for which eutilities? -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 12:44:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 11:44:44 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> On Jun 4, 2010, at 10:45 AM, Gopal wrote: > Hi Chris, > > this is the code. Sorry I did not realize I should post the code: > > > ... > while( my $input = $seqio_obj->next_seq() ) { > # > $blast_report = $blast_obj->blastall($input); > > push(@reports,$blast_report); > > } > ... Yep, you're caching your SearchIO instances here. No need; if you want to cache you should cache the Result object instead. Something like push(@reports, $blast_report->next_result); Probably best to rethink this strategy unless you have absolutely no other way to deal with your data, if you have lots of BLAST reports you will suck up memory very quickly. > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 chris From pengyu.ut at gmail.com Fri Jun 4 12:57:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:57:43 -0500 Subject: [Bioperl-l] get_dbfrom document Message-ID: According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, get_dbfrom is alias for get_db(). get_dbfrom Title : get_dbfrom Usage : my $origdb = $link->get_dbfrom; Function : returns referring database Returns : string Args : none Note : alias for get_db() I'm not sure what get_db() is but I only see get_db. Is get_db the same as get_db()? If this is true, then get_dbfrom is not an alias for get_db, because I get different result for the two variables. Am I understanding it correctly? -- Regards, Peng From gopal.cshl at gmail.com Fri Jun 4 13:51:04 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 13:51:04 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: Hi Chris, I followed your suggestion and changed the loop into: On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > > > while( my $input = $seqio_obj->next_seq() ) { > > # > > $blast_report = $blast_obj->blastall($input); > > > > push(@reports,$blast_report); > > > > } > > ... > > Yep, you're caching your SearchIO instances here. No need; while( my $input = $seqio_obj->next_seq() ) { $blast_report = $blast_obj->blastall($input); while(my $result=$blast_report->next_result){ Now no objects are cached in arrays. The script worked fine with one genome already and the other is running. thanks for cleaning things up. I will remember to avoid this snag. best, -gopal > if you want to cache you should cache the Result object instead. Something > like > > push(@reports, $blast_report->next_result); > > Probably best to rethink this strategy unless you have absolutely no other > way to deal with your data, if you have lots of BLAST reports you will suck > up memory very quickly. > > > -- > > Gopal Gopinathrao, PhD > > Bioinformaticist / Biologist > > CFSAN, US FDA > > www.patrn.net/patrn > > gopal.gopinathrao at fda.hhs.gov > > P: 301-210-7881 > > > chris -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From pengyu.ut at gmail.com Fri Jun 4 15:58:09 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 14:58:09 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms Message-ID: Hi, I think that there is a typo in the document of get_replaced_terms. The following is from perldoc Bio::DB::EUtilities. $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? (Note 's'). get_replaced_terms Title : get_replaced_terms Usage : my $term = $eutil->get_replaced_term Function : returns array of strings replaced in the query Returns : string Args : none Notes : only applicable for espell Also, I tried the following code. I'm not sure I got the following error. Would you please let me know what I'm wrong? $ cat ./get_replaced_terms/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; $ ./get_replaced_terms/main.pl Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. get_replaced_terms: -- Regards, Peng From maj at fortinbras.us Fri Jun 4 16:06:55 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Fri, 4 Jun 2010 16:06:55 -0400 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4F3323F9671041598734EFC85C395925@NewLife> This is a fairly basic perl idiom. $_ is changing with the outer loop containing the print statement, which is probably looping through the accessors for the object represented by $field. ----- Original Message ----- From: "Peng Yu" To: Sent: Friday, June 04, 2010 12:15 PM Subject: [Bioperl-l] The usage of $field->$_ > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From pengyu.ut at gmail.com Fri Jun 4 16:26:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 15:26:53 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: <4F3323F9671041598734EFC85C395925@NewLife> References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: I know this is not a hard question. But I'm still learning perl. I don't see the usage "->$_" in man perlvar. Would you please show me where is the documentation that has detailed discussion on this? On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen wrote: > This is a fairly basic perl idiom. $_ is changing with the outer loop > containing the print statement, which is probably looping through the > accessors for the object represented by $field. > ----- Original Message ----- From: "Peng Yu" > To: > Sent: Friday, June 04, 2010 12:15 PM > Subject: [Bioperl-l] The usage of $field->$_ > > >> In the Eutilities cookbook, >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook >> >> I see the following code, >> >> ? print join(',', grep {$field->$_} qw(is_date >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; >> >> I'm not quite familiar with the usage of $field->$_. I don't see where >> it is covered in man perlvar (I don't the usage of $_ for pattern >> matching, but not in $variable->$). Would you please let me know where >> is the document that explain this usage? >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > -- Regards, Peng From Kevin.M.Brown at asu.edu Fri Jun 4 16:46:36 2010 From: Kevin.M.Brown at asu.edu (Kevin Brown) Date: Fri, 4 Jun 2010 13:46:36 -0700 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: <1A4207F8295607498283FE9E93B775B406C40162@EX02.asurite.ad.asu.edu> That's because you are mixing up two things. -> is an accessor and not part of a variable. $_ is a variable and is in perlvar. And this isn't a list for learning PERL. There are plenty of resources out their for learning general PERL information. Kevin Brown Center for Innovations in Medicine Biodesign Institute Arizona State University > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, June 04, 2010 1:27 PM > To: Mark A. Jensen > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] The usage of $field->$_ > > I know this is not a hard question. But I'm still learning perl. > > I don't see the usage "->$_" in man perlvar. Would you please show me > where is the documentation that has detailed discussion on this? > > On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen > wrote: > > This is a fairly basic perl idiom. $_ is changing with the > outer loop > > containing the print statement, which is probably looping > through the > > accessors for the object represented by $field. > > ----- Original Message ----- From: "Peng Yu" > > To: > > Sent: Friday, June 04, 2010 12:15 PM > > Subject: [Bioperl-l] The usage of $field->$_ > > > > > >> In the Eutilities cookbook, > >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > >> > >> I see the following code, > >> > >> ? print join(',', grep {$field->$_} qw(is_date > >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden > is_numerical)),"\n\n"; > >> > >> I'm not quite familiar with the usage of $field->$_. I > don't see where > >> it is covered in man perlvar (I don't the usage of $_ for pattern > >> matching, but not in $variable->$). Would you please let > me know where > >> is the document that explain this usage? > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > > > > > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From armendarez77 at hotmail.com Fri Jun 4 17:47:39 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Fri, 4 Jun 2010 14:47:39 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 Message-ID: Hello, I'm noticing that Bio::Tools::Run::Primer3 doesn't always give me the same results as the Web Primer3. For example, I provided Bio::Tools::Run::Primer3 the following: Template Sequence: atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg PRIMER_LEFT_INPUT: atgagncttctaaccgagGTcGAAACGTA PRIMER_TASK: pick_left_only I just want to know if the Tm is between 60 and 80C. However, Bio::Tools::Run::Primer3 returns nothing, while Web Primer3 returns a result, as expected: OLIGO start len tm gc% any 3' seq LEFT_PRIMER 1 29 69.11 46.43 4.00 2.00 atgagncttctaaccgagGTcGAAACGTA SEQUENCE SIZE: 225 INCLUDED REGION SIZE: 225 1 atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTC >>>>>>>>>>>>>>>>>>>>>>>>>>>>> 61 AAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAg 121 GCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTn 181 GGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg _________________________________________ Here is a snippet of my code for the above parameters: my $template = "atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg"; my $leftInput = "atgagncttctaaccgagGTcGAAACGTA"; my $templateObj = Bio::PrimarySeq->new(-seq=>$template, -id=>'Template'); my $primer3 = Bio::Tools::Run::Primer3->new(-seq=>$templateObj, -path =>"/usr/bin/primer3_core"); unless ($primer3->executable) {print STDERR "primer3 can not be found. Is it installed?\n"; exit(-1)} $primer3->add_targets('PRIMER_LEFT_INPUT'=>$primerSeq, 'PRIMER_TASK'=>'pick_left_only'); my $results=$primer3->run; my $numberResults = $results->number_of_results(); if($numberResults > 0){ for(my $n=0; $n < $numberResults; $n++){ my $pr = $results->primer_results($n); my $primer = ${$pr}{'PRIMER_LEFT_SEQUENCE'}; my $gc = ${$pr}{'PRIMER_LEFT_GC_PERCENT'}; my $tm = ${$pr}{'PRIMER_LEFT_TM'}; my $selfAny = ${$pr}{'PRIMER_LEFT_SELF_ANY'}; my $selfEnd = ${$pr}{'PRIMER_LEFT_SELF_END'}; my $endStability = ${$pr}{'PRIMER_LEFT_END_STABILITY'}; print "$primer\t$gc\t$tm\t$selfAny\t$selfEnd\t$endStability\n"; } } This seems pretty straightforward, but I don't get any results. Can you see what I am doing wrong? Thank you, Veronica _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From David.Messina at sbc.su.se Fri Jun 4 18:31:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:31:50 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: On Jun 4, 2010, at 9:58 PM, Peng Yu wrote: > I think that there is a typo in the document of get_replaced_terms. Fixed, thanks. Dave From David.Messina at sbc.su.se Fri Jun 4 18:47:36 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:47:36 +0200 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: References: Message-ID: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Hi Jessica, > Does any one know if there is any existing function of bioperl that can > locate and highlighted short stretch of nt sequences within long genomic sequences ? I don't think there is an out-of-the-box BioPerl solution for this. You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. A simply way, requiring no special code, would be to change the case of the letters: agctagcatgcatgcAGACTGATCATCagctagctac Or use HTML: agctagcatgcatgcAGACTGATCATCagctagctac For some more sophisticated options, take a look at Bio::Graphics: http://search.cpan.org/perldoc?Bio::Graphics Dave From David.Messina at sbc.su.se Fri Jun 4 19:06:06 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:06:06 +0200 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > It seems that term_count is not available for einfo. The method is actually get_term_count, not term_count. Thanks for catching that (now fixed). Dave From David.Messina at sbc.su.se Fri Jun 4 19:21:41 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:21:41 +0200 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <575B0EED-748C-40AE-A0C2-4EE94E0315A1@sbc.su.se> > I'm not sure what get_db() is but I only see get_db. > Is get_db the same as get_db()? Yes. Think about how you call most functions. They take arguments in parentheses after their name. Such as: my $string = join("\t", @array); "\t" and @array are arguments to the join function. Or: my $lowercase_string = lc("MY UPPERCASE STRING"); "MY UPPERCASE STRING" is an argument to the lc function. So in Perl we often write join() or lc() to indicate that join() and lc() are functions. > If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. >From looking at the code, I think you're right. get_db() and get_dbto() are aliases for get_database(), all of which refer to the queried database. But get_dbfrom() gives you the referring database, that is the database linked from (as pointed out in the synopsis. Fixed this. Dave From David.Messina at sbc.su.se Fri Jun 4 20:10:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:10:20 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Please be sure to "reply all" so that this conversation stays on the mailing list. > Could you also take a look at the question in the original email? Thank you! Oops, missed that. > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: I think you might have pasted two different examples together. From http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#espell the correct method to call when using espell is get_corrected_query: print "Did you mean \"",$factory->get_corrected_query, "\"?\n"; instead of the get_replaced_terms one. Dave From David.Messina at sbc.su.se Fri Jun 4 20:16:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:16:57 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: Message-ID: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Hi Veronica, Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? Dave From pengyu.ut at gmail.com Fri Jun 4 20:46:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 19:46:53 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Fri, Jun 4, 2010 at 7:10 PM, Dave Messina wrote: > Please be sure to "reply all" so that this conversation stays on the mailing list. > >> Could you also take a look at the question in the original email? Thank you! > > > Oops, missed that. > >> Also, I tried the following code. I'm not sure I got the following >> error. Would you please let me know what I'm wrong? >> >> $ cat ./get_replaced_terms/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::DB::EUtilities; >> >> my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', >> ? ? ? ? ? ? ? ? ? ? ? ? -term => 'brest cnacer', >> ? ? ? ? ? ? ? ? ? ? ? ? -email => 'mymail at foo.bar' >> ? ? ? ? ? ? ? ? ? ? ? ); >> >> print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; >> >> $ ?./get_replaced_terms/main.pl >> Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. >> get_replaced_terms: > > > I think you might have pasted two different examples together. No. I want to try get_replaced_terms instead of get_corrected_query. Could you give me an example in which get_replaced_terms is used? -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 06:51:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:20 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: Most of these methods have changed to get_* methods (nothing is settable). I'll go through and check them for consistency, just to make sure. chris On Jun 4, 2010, at 11:33 AM, Peng Yu wrote: > Hi, > > It seems that term_count is not available for einfo. > > > $ ./main.pl > Can't locate object method "term_count" via package > "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. > $ vim ./main.pl > pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ > cat ./main.pl > > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', > -email => 'mymail at foo.bar', > -db => 'pubmed'); > > while (my $field = $factory->next_FieldInfo) { > print "term_count: ",$field->term_count,"\n"; > } > > > But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' > doesn't say so. Could you let me know where to find which methods are > available for which eutilities? > > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:51:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:30 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4A770918-B0F3-4BD8-9DAC-2B7BD2CCF4F3@illinois.edu> $_ is the value being iterated through in a grep of a list of values. This is just using that list as methods (like $field->is_date, but for each method), testing the return value as defined, and if so adding to the list for the join. chris On Jun 4, 2010, at 11:15 AM, Peng Yu wrote: > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:55:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:55:17 -0500 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <44C403BF-1C78-4793-ACD5-BA6A18D6A153@illinois.edu> That's incorrect; get_dbfrom for elink is the originating database; get_db should always be the database that is queried (for elink this is dbto). Will look into it. chris On Jun 4, 2010, at 11:57 AM, Peng Yu wrote: > According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, > get_dbfrom is alias for get_db(). > > get_dbfrom > Title : get_dbfrom > Usage : my $origdb = $link->get_dbfrom; > Function : returns referring database > Returns : string > Args : none > Note : alias for get_db() > > I'm not sure what get_db() is but I only see get_db. Is get_db the > same as get_db()? If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. > > Am I understanding it correctly? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:56:49 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:56:49 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: <4EA71510-CF81-4D93-921A-F479309281E4@illinois.edu> We do have the cleanup() method if caching, but in practice I've found that caching is very rarely ever needed. chris On Jun 4, 2010, at 12:51 PM, Gopal wrote: > Hi Chris, > > I followed your suggestion and changed the loop into: > > On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > >> >>> while( my $input = $seqio_obj->next_seq() ) { >>> # >>> $blast_report = $blast_obj->blastall($input); >>> >>> push(@reports,$blast_report); >>> >>> } >>> ... >> >> Yep, you're caching your SearchIO instances here. No need; > > > > > while( my $input = $seqio_obj->next_seq() ) { > $blast_report = $blast_obj->blastall($input); > > > while(my $result=$blast_report->next_result){ > > Now no objects are cached in arrays. The script worked fine with one genome > already and the other is running. > thanks for cleaning things up. I will remember to avoid this snag. > > best, > > -gopal > > > > > > > > > > > > >> if you want to cache you should cache the Result object instead. Something >> like >> >> push(@reports, $blast_report->next_result); >> >> Probably best to rethink this strategy unless you have absolutely no other >> way to deal with your data, if you have lots of BLAST reports you will suck >> up memory very quickly. >> >>> -- >>> Gopal Gopinathrao, PhD >>> Bioinformaticist / Biologist >>> CFSAN, US FDA >>> www.patrn.net/patrn >>> gopal.gopinathrao at fda.hhs.gov >>> P: 301-210-7881 >> >> >> chris > > > > > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:34:34 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:34:34 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Message-ID: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. chris On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > Hi Veronica, > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > Dave > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:36:18 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:36:18 -0500 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> References: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Message-ID: On Jun 4, 2010, at 5:47 PM, Dave Messina wrote: > Hi Jessica, > > >> Does any one know if there is any existing function of bioperl that can >> locate and highlighted short stretch of nt sequences within long genomic sequences ? > > > I don't think there is an out-of-the-box BioPerl solution for this. > > You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. > > For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. > > See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. > > Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. > > A simply way, requiring no special code, would be to change the case of the letters: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > Or use HTML: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > For some more sophisticated options, take a look at Bio::Graphics: > > http://search.cpan.org/perldoc?Bio::Graphics > > > Dave GBrowse (via Bio::Graphics) does highlighting for text searches, so you could probably dig out the code used for that as a start. chris From cjfields at illinois.edu Sat Jun 5 08:37:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:37:26 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> References: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> Message-ID: <6C1D172A-B59A-4EE8-90E4-FC693CC031DB@illinois.edu> On Jun 4, 2010, at 6:06 PM, Dave Messina wrote: > > On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > >> It seems that term_count is not available for einfo. > > The method is actually get_term_count, not term_count. > > Thanks for catching that (now fixed). > > > Dave Thanks for the doc fixes dave. I'll go through and see if there are any more. Peng, let me know if you run into anything else (or you can submit them to bugzilla if needed). chris From cjfields at illinois.edu Sat Jun 5 08:40:29 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:40:29 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Jun 4, 2010, at 7:46 PM, Peng Yu wrote: >> I think you might have pasted two different examples together. > > No. I want to try get_replaced_terms instead of get_corrected_query. > Could you give me an example in which get_replaced_terms is used? > > -- > Regards, > Peng Peng, This is just a value that NCBI returns, indicating which terms have been replaced in a query. chris From cjfields at illinois.edu Sat Jun 5 09:20:19 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:20:19 -0500 Subject: [Bioperl-l] Leftover SVN tags Message-ID: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... chris From cjfields at illinois.edu Sat Jun 5 09:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:35:51 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <6B14D526-D9F8-416B-8B7A-273817892C7A@illinois.edu> On Jun 4, 2010, at 2:58 PM, Peng Yu wrote: > Hi, > > I think that there is a typo in the document of get_replaced_terms. > The following is from perldoc Bio::DB::EUtilities. > $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? > (Note 's'). > > > get_replaced_terms > Title : get_replaced_terms > Usage : my $term = $eutil->get_replaced_term > Function : returns array of strings replaced in the query > Returns : string > Args : none > Notes : only applicable for espell > > > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: > > > -- > Regards, > Peng There were no replaced terms returned, you can see this in the raw XML (see below). So the method doesn't return anything, hence the warning. You can get around this if you do something like: print "get_replaced_terms: ".($factory->get_replaced_terms || '')."\n"; chris pyrimidine1:email cjfields$ cat espell.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print $factory->get_Response->content."\n"; pyrimidine1:email cjfields$ perl espell.pl pubmed brest cnacer breast cancer chris From hlapp at drycafe.net Sat Jun 5 10:50:23 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 5 Jun 2010 10:50:23 -0400 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Message-ID: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. -hilmar On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > Looks like we have $Id$ tags left over from SVN. The question is, > so we want to keep these in and have them expanded via > gitattributes? Personally having the SHA in there seems kinda > pointless.... > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 5 11:12:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 10:12:26 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> Message-ID: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> That was the only reason I could think of, but truthfully I generally have the user indicate which $Bio::Root::Root::VERSION and/or 'perldoc -l Bio::Root::Root' (the latter which gives the location of the bioperl install). chris On Jun 5, 2010, at 9:50 AM, Hilmar Lapp wrote: > It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. > > But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. > > -hilmar > > On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > >> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sat Jun 5 11:44:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 10:44:43 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) Message-ID: The following problem generate exceptions, because certain parameters are not passed to reset_parameters. However, I think that it is reasonable to avoid setting any parameters that have already been set using new(). If my understand is correct, I'd suggest that reset_parameters should only take parameters that need to be reset but not to take parameters that don't have be reset. #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'protein', -term => 'BRCA1 AND human', -email => 'mymail at foo.bar', ); print "get_retmax(): ",$factory->get_retmax(),"\n"; my $count=$factory->get_count; print "count: ",$count,"\n"; $factory->reset_parameters(-eutil => 'esearch', # -db => 'protein', # -term => 'BRCA1 AND human', # -email => 'mymail at foo.bar', -retmax => $count ); print "get_retmax(): ",$factory->get_retmax(),"\n"; -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 16:09:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 15:09:37 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) In-Reply-To: References: Message-ID: <00436010-A1D5-441F-91A7-591E7E7D4F79@illinois.edu> On Jun 5, 2010, at 10:44 AM, Peng Yu wrote: > The following problem generate exceptions, because certain parameters > are not passed to reset_parameters. However, I think that it is > reasonable to avoid setting any parameters that have already been set > using new(). If my understand is correct, I'd suggest that > reset_parameters should only take parameters that need to be reset but > not to take parameters that don't have be reset. You need to use set_parameters() to carry over parameters to subsequent searches. Just as the name of the method implies, reset_parameters() resets pretty much everything, then sets what you pass, and is necessary between certain steps to ensure you aren't carrying over parameters that cause problems when switching eutils if using the same instance (this used to be a problem with elink in particular). I may add an exception for email and tool parameters as a convenience for the obvious reasons. However, changing the below to set_parameters() works for me. > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'protein', > -term => 'BRCA1 AND human', > -email => 'mymail at foo.bar', > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > my $count=$factory->get_count; > print "count: ",$count,"\n"; > > $factory->reset_parameters(-eutil => 'esearch', > # -db => 'protein', > # -term => 'BRCA1 AND human', > # -email => 'mymail at foo.bar', > -retmax => $count > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > > > -- > Regards, > Peng chris From pengyu.ut at gmail.com Sat Jun 5 17:28:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 16:28:18 -0500 Subject: [Bioperl-l] bioperl support for running blast locally Message-ID: There is a module to run blast remotely Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and I think that it makes more sense for me to run blast locally. Is there a way to let bioperl parse the output from my local command line blast? -- Regards, Peng From florent.angly at gmail.com Sat Jun 5 18:55:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Sun, 06 Jun 2010 08:55:56 +1000 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: Message-ID: <4C0AD5FC.1070907@gmail.com> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / BlastPlus.pm Then to parse the results, you can read this: http://www.bioperl.org/wiki/HOWTO:SearchIO Florent On 06/06/2010 07:28 AM, Peng Yu wrote: > There is a module to run blast remotely > Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and > I think that it makes more sense for me to run blast locally. Is there > a way to let bioperl parse the output from my local command line > blast? > > From pengyu.ut at gmail.com Sat Jun 5 19:16:40 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:16:40 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0AD5FC.1070907@gmail.com> References: <4C0AD5FC.1070907@gmail.com> Message-ID: It seems that StandAloneBlastPlus is a higher level wrapper than BlastPlus. Is it better to use StandAloneBlastPlus? Essentially, what I need is to compare pairs of sequences. Note that I want to use the bash Process substitution to avoid generating temp files. Does StandAloneBlastPlus support this? If yes, would you please how me what command to use? blastn -query <(echo GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) -subject <(echo CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: > To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ > BlastPlus.pm > Then to parse the results, you can read this: > http://www.bioperl.org/wiki/HOWTO:SearchIO > Florent > > On 06/06/2010 07:28 AM, Peng Yu wrote: >> >> There is a module to run blast remotely >> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >> I think that it makes more sense for me to run blast locally. Is there >> a way to let bioperl parse the output from my local command line >> blast? >> >> > > -- Regards, Peng From pengyu.ut at gmail.com Sat Jun 5 19:19:06 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:19:06 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? Message-ID: http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus The following cpan link shown in the above page is not working. Could you let me know where to download the module? http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 19:57:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:57:56 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, Re: StandAloneBlastPlus, is this not covered in it's HOWTO? http://www.bioperl.org/wiki/HOWTO:BlastPlus As for CPAN doc links, the wiki page links are autogenerated via a template; unfortunately the BlastPlus code hasn't been added to CPAN yet (hence the broken link). There is a tentative plan to push through a 1.6.2 very soon, which should include this. chris On Jun 5, 2010, at 6:19 PM, Peng Yu wrote: > http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus > > The following cpan link shown in the above page is not working. Could > you let me know where to download the module? > > http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 19:59:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:59:41 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> Message-ID: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). For the rest, please see the associated documentation and the HOWTO: http://www.bioperl.org/wiki/HOWTO:BlastPlus chris On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > It seems that StandAloneBlastPlus is a higher level wrapper than > BlastPlus. Is it better to use StandAloneBlastPlus? > > Essentially, what I need is to compare pairs of sequences. Note that I > want to use the bash Process substitution to avoid generating temp > files. Does StandAloneBlastPlus support this? If yes, would you please > how me what command to use? > > blastn -query <(echo > GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) > -subject <(echo > CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) > > > On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >> BlastPlus.pm >> Then to parse the results, you can read this: >> http://www.bioperl.org/wiki/HOWTO:SearchIO >> Florent >> >> On 06/06/2010 07:28 AM, Peng Yu wrote: >>> >>> There is a module to run blast remotely >>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>> I think that it makes more sense for me to run blast locally. Is there >>> a way to let bioperl parse the output from my local command line >>> blast? >>> >>> >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 22:38:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 21:38:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch Message-ID: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: Bio::Tools::Match Bio::Tools::Phylo::Gerp Bio::Tools::Phylo::Gumby As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. chris From cjfields at illinois.edu Sat Jun 5 23:40:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 22:40:54 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch In-Reply-To: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> References: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> Message-ID: <3F0840D3-F8CF-4503-99DF-2A550788C9DE@illinois.edu> After removal and some changes for API consistency, all tests pass on the branch, so it's ready to merge. chris On Jun 5, 2010, at 9:38 PM, Chris Fields wrote: > As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. > > However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: > > Bio::Tools::Match > Bio::Tools::Phylo::Gerp > Bio::Tools::Phylo::Gumby > > As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: > > http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated > > If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. > > chris > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 08:04:22 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 14:04:22 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> Message-ID: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository?" If there is, I'm fine with dropping the in-file $Id$ rev/author/datestamp information. (Seems like that's the Way of Git, anyway). If not, though, I'm kinda inclined to keep some sort of author and datestamp in each file. I am prepared to be convinced otherwise, though. I've done a little reading on this issue, but I don't fully understand the arguments against. Dave From pengyu.ut at gmail.com Sun Jun 6 09:01:14 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 08:01:14 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run Message-ID: I downloaded bioperl-live and bioperl-run by svn. bioperl-live is installed correctly. $ echo $PERL5LIB $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Perl; print Bio::Perl->VERSION, "\n"; $ ./main.pl 1.0069 However, bioperl-run seems can be compiled but can not be installed. bioperl-run$ ./Build install Building BioPerl-Run I'm wondering how to fix the problem. -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 09:16:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:16:51 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <7120F98E-43B2-4E71-9838-F41F06D9C668@illinois.edu> Peng, Are you installing this locally? I never recommend installing the various in-development bioperl distributions system-wide unless you absolutely need them for some particular reason; it's better to keep them local if possible. chris On Jun 6, 2010, at 8:01 AM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. bioperl-live is > installed correctly. > > $ echo $PERL5LIB > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Perl; > > print Bio::Perl->VERSION, "\n"; > > $ ./main.pl > 1.0069 > > However, bioperl-run seems can be compiled but can not be installed. > > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 09:28:23 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:28:23 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. By svn from Github? > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. We'll need more information to figure out what the problem is. Can you post the whole transcript of your failed install? Dave From cjfields at illinois.edu Sun Jun 6 09:44:35 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:44:35 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> On Jun 6, 2010, at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? There is read support for using svn and github. Also experimental write support. http://github.com/blog/626-announcing-svn-support http://github.com/blog/644-subversion-write-support >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? > > > Dave Agreed. Would be more informative. chris From David.Messina at sbc.su.se Sun Jun 6 09:47:39 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:47:39 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> Message-ID: <10FD26AE-C8BD-4717-8548-7CE3548709EA@sbc.su.se> >>> I downloaded bioperl-live and bioperl-run by svn. >> >> By svn from Github? > > There is read support for using svn and github. Also experimental write support. > > http://github.com/blog/626-announcing-svn-support > http://github.com/blog/644-subversion-write-support Right. Sorry, didn't mean to imply it wasn't possible to get it from Github via svn. I was intending to confirm that he was indeed getting the latest version. (Although, now that I think about it, these day there isn't anyhere else that it's possible to get BioPerl via svn other than Github.) Dave From David.Messina at sbc.su.se Sun Jun 6 10:16:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 16:16:20 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> > My perl is installed in a directory in my home. I think that bioperl > will be installed in the directory in the perl directory in my home, > right? Hmm, I think you still have to tell Build that you want it to install in your private directory. Have you read http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA ? > BTW, the following web address better be changed to 'Using_git". > http://www.bioperl.org/wiki/Using_Subversion Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? >> Can you post the whole transcript of your failed install? > > I assume that you are asking the Build script. Please see the > attachment. Let me know if you mean something else. No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Dave From pengyu.ut at gmail.com Sun Jun 6 11:15:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 10:15:24 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >> My perl is installed in a directory in my home. I think that bioperl >> will be installed in the directory in the perl directory in my home, >> right? > > Hmm, I think you still have to tell Build that you want it to install in your private directory. > > Have you read > > http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA I actually read the description. But I don't understand why it is the case. When I download other packages from CPAN. I don't need to specify anything. They get automatically installed in a directory (I think it is site_perl?) in my local perl installation directory. Why I have to explicitly say where bioperl should be installed ? > ? > > >> BTW, the following web address better be changed to 'Using_git". >> http://www.bioperl.org/wiki/Using_Subversion > > Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. > > Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? Please see the following webpage.Search for "Using Subversion". http://www.bioperl.org/wiki/HOWTO:BlastPlus >>> Can you post the whole transcript of your failed install? >> >> I assume that you are asking the Build script. Please see the >> attachment. Let me know if you mean something else. > > No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Once, I saw some installing command after "Building BioPerl-Run" when I run '.Build install". But I can not reproduce it any more. I delete the download and run the installation process again. But it still doesn't seem to work. $ git clone git://github.com/bioperl/bioperl-run.git Initialized empty Git repository in /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ remote: Counting objects: 11230, done. remote: Compressing objects: 100% (2502/2502), done. remote: Total 11230 (delta 7360), reused 11184 (delta 7322) Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. Resolving deltas: 100% (7360/7360), done. Checking out files: 100% (379/379), done. $ perl Build.PLInstall scripts? y/n [n ] n Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ] n - will not run internet-requiring tests Creating new 'MYMETA.yml' with configuration results Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Creating new 'Build' script for 'BioPerl-Run' version '1.006900' $ ./Build manifest File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' Added to MANIFEST: AUTHORS Added to MANIFEST: Build.PL Added to MANIFEST: Changes Added to MANIFEST: DEPENDENCIES Added to MANIFEST: INSTALL ..... Added to MANIFEST: t/TCoffee.t Added to MANIFEST: t/TigrAssembler.t Added to MANIFEST: t/Tmhmm.t Added to MANIFEST: t/TribeMCL.t Added to MANIFEST: t/tRNAscanSE.t Added to MANIFEST: t/Vista.t $ ./Build install Building BioPerl-Run $ -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 12:25:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 11:25:59 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <413AB412-CE27-4091-9E94-D9A345F59AF3@illinois.edu> On Jun 6, 2010, at 10:15 AM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >>> My perl is installed in a directory in my home. I think that bioperl >>> will be installed in the directory in the perl directory in my home, >>> right? >> >> Hmm, I think you still have to tell Build that you want it to install in your private directory. >> >> Have you read >> >> http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA > > I actually read the description. But I don't understand why it is the case. > > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? That's not the point. You are not installing code from CPAN; you are installing code in development from our git/github repository. We can't always guarantee that it would pass tests, as the CPAN release does, nor should we need to. I know there is a need to install the latest and greatest bleeding-edge code, but there is a reason it's called 'bleeding edge'. It may not always pass tests, so installing it system-wide is definitely not recommended. I would go as far as saying that installing it locally is probably also not a good idea unless you know what you are doing. >> ? >> >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Looks like that was corrected to point to the proper location. I just want to point out something: we've now been on git/github for just over a month now. It's very possible there are links on the wiki that point to the older page. It's also possible to simply edit said pages to point to the proper page; it is a wiki, after all. If you see a link to the wrong page, feel free to edit it after logging in (anyone can get an account). >>>> Can you post the whole transcript of your failed install? >>> >>> I assume that you are asking the Build script. Please see the >>> attachment. Let me know if you mean something else. >> >> No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? > > Once, I saw some installing command after "Building BioPerl-Run" when > I run '.Build install". But I can not reproduce it any more. > > I delete the download and run the installation process again. But it > still doesn't seem to work. > > $ git clone git://github.com/bioperl/bioperl-run.git > Initialized empty Git repository in > /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ > remote: Counting objects: 11230, done. > remote: Compressing objects: 100% (2502/2502), done. > remote: Total 11230 (delta 7360), reused 11184 (delta 7322) > Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. > Resolving deltas: 100% (7360/7360), done. > Checking out files: 100% (379/379), done. > > $ perl Build.PLInstall scripts? y/n [n ] > n > Do you want to run tests that require connection to servers across the internet > (likely to cause some failures)? y/n [n ] > n > - will not run internet-requiring tests > Creating new 'MYMETA.yml' with configuration results > Can't find dist packages without a MANIFEST file > Run 'Build manifest' to generate one > > WARNING: Possible missing or corrupt 'MANIFEST' file. > Nothing to enter for 'provides' field in metafile. > Creating new 'Build' script for 'BioPerl-Run' version '1.006900' > > $ ./Build manifest > File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' > Added to MANIFEST: AUTHORS > Added to MANIFEST: Build.PL > Added to MANIFEST: Changes > Added to MANIFEST: DEPENDENCIES > Added to MANIFEST: INSTALL > ..... > Added to MANIFEST: t/TCoffee.t > Added to MANIFEST: t/TigrAssembler.t > Added to MANIFEST: t/Tmhmm.t > Added to MANIFEST: t/TribeMCL.t > Added to MANIFEST: t/tRNAscanSE.t > Added to MANIFEST: t/Vista.t > > $ ./Build install > Building BioPerl-Run > $ > > -- > Regards, > Peng I added a default MANIFEST, just in case. However, this shouldn't prevent installation, it just builds one for packaging up the distribution for CPAN. This does install on my machine locally (see below). If you reinstall (also demonstrated below) you won't see any install messages b/c no modules have changed from the build process. So, maybe it already installed successfully, and you haven't set the include path correctly so it isn't showing up? Make sure you are setting PERL5LIB or your 'use lib' directive to point to the proper location; in the below, that would be '/Users/cjfields/local/lib/perl5'. chris pyrimidine1:bioperl-run cjfields$ perl Build.PL --install-base ~/local/ Install scripts? y/n [n ]y Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ]y - will run internet-requiring tests Do you want to run tests requiring a valid email address? y/n [n ]y Enter email address: cjfields at bioperl.org Creating new 'MYMETA.yml' with configuration results Creating new 'Build' script for 'BioPerl-Run' version '1.006900' pyrimidine1:bioperl-run cjfields$ ./Build Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run Installing /Users/cjfields/local/man/man1/bp_bioperl_application_installer.pl.1 Installing /Users/cjfields/local/man/man1/bp_multi_hmmsearch.pl.1 Installing /Users/cjfields/local/man/man1/bp_panalysis.pl.1 Installing /Users/cjfields/local/man/man1/bp_papplmaker.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_neighbor.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_protdist.pl.1 Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/SoapEUtilities.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap/WSDL.pm .... Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::tRNAscanSE.3 Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::Vista.3 Installing /Users/cjfields/local/bin/bp_bioperl_application_installer.pl Installing /Users/cjfields/local/bin/bp_multi_hmmsearch.pl Installing /Users/cjfields/local/bin/bp_panalysis.pl Installing /Users/cjfields/local/bin/bp_papplmaker.pl Installing /Users/cjfields/local/bin/bp_run_neighbor.pl Installing /Users/cjfields/local/bin/bp_run_protdist.pl pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ cd pyrimidine1:~ cjfields$ perldoc -l Bio::Tools::Run::StandAloneBlastPlus /Users/cjfields/local/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm From David.Messina at sbc.su.se Sun Jun 6 12:26:04 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 18:26:04 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <594C1A8B-D33D-43FA-9B47-53B59F2D481C@sbc.su.se> On Jun 6, 2010, at 17:15, Peng Yu wrote: > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? Ah okay, I misunderstood. If it works for other CPAN installs, it should work for BioPerl. >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting >> Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to >> point to Using_git. May I ask where did you see ? that is, how did >> you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Thanks. > I delete the download and run the installation process again. But it > still doesn't seem to work. I'll take a look at this later. In the meantime, you can certainly do as Chris recommended earlier and not 'install' and just add bioperl-run/lib to your PERL5LIB. As he said, that's better anyway, since you can keep up-to-date with the latest bug fixes and changes by simply doing 'git pull'. Dave From David.Messina at sbc.su.se Sun Jun 6 14:29:45 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 20:29:45 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? > > We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? To anwer my own question, yes: http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob I copied the Perl script to here: http://gist.github.com/427769 If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. Dave From pengyu.ut at gmail.com Sun Jun 6 15:11:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 14:11:24 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: I don't see how StandAloneBlastPlus can help extract all the information I need. For example, I need to know the starts and the ends of the pair of sequences that match (1 and 33, and 1 and 33 in the following example). How many gaps and mismatches there are (no gaps and no mismatches in the following example)? The strand information. Would you please let me know if these are possible with StandAloneBlastPlus from git? $ blastn -query <(echo CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) -subject <(echo ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) > HWI-EAS11X_10097_4_1_1909_9532.txt $ cat HWI-EAS11X_10097_4_1_1909_9532.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 Score = 62.1 bits (33), Expect = 1e-15 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 ||||||||||||||||||||||||||||||||| Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: > StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). ?StandAloneBlast is the C-based legacy BLAST (they have different parameters). > > For the rest, please see the associated documentation and the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:BlastPlus > > chris > > On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > >> It seems that StandAloneBlastPlus is a higher level wrapper than >> BlastPlus. Is it better to use StandAloneBlastPlus? >> >> Essentially, what I need is to compare pairs of sequences. Note that I >> want to use the bash Process substitution to avoid generating temp >> files. Does StandAloneBlastPlus support this? If yes, would you please >> how me what command to use? >> >> blastn -query <(echo >> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >> -subject <(echo >> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >> >> >> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>> To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ >>> BlastPlus.pm >>> Then to parse the results, you can read this: >>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>> Florent >>> >>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>> >>>> There is a module to run blast remotely >>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>> I think that it makes more sense for me to run blast locally. Is there >>>> a way to let bioperl parse the output from my local command line >>>> blast? >>>> >>>> >>> >>> >> >> >> >> -- >> Regards, >> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 15:26:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 14:26:05 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: According to the SYNPOSIS and the HOWTO, the factory returns a $result object, which I assume is derived from Bio::SearchIO parsing. For more information on that see that relevant HOWTO, which gives some illustrative examples. http://www.bioperl.org/wiki/HOWTO:SearchIO chris On Jun 6, 2010, at 2:11 PM, Peng Yu wrote: > I don't see how StandAloneBlastPlus can help extract all the > information I need. For example, I need to know the starts and the > ends of the pair of sequences that match (1 and 33, and 1 and 33 in > the following example). How many gaps and mismatches there are (no > gaps and no mismatches in the following example)? The strand > information. > > Would you please let me know if these are possible with > StandAloneBlastPlus from git? > > $ blastn -query <(echo > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) > -subject <(echo > ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) >> HWI-EAS11X_10097_4_1_1909_9532.txt > $ cat HWI-EAS11X_10097_4_1_1909_9532.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > Score = 62.1 bits (33), Expect = 1e-15 > Identities = 33/33 (100%), Gaps = 0/33 (0%) > Strand=Plus/Minus > > Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 > ||||||||||||||||||||||||||||||||| > Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > > On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: >> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). >> >> For the rest, please see the associated documentation and the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:BlastPlus >> >> chris >> >> On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: >> >>> It seems that StandAloneBlastPlus is a higher level wrapper than >>> BlastPlus. Is it better to use StandAloneBlastPlus? >>> >>> Essentially, what I need is to compare pairs of sequences. Note that I >>> want to use the bash Process substitution to avoid generating temp >>> files. Does StandAloneBlastPlus support this? If yes, would you please >>> how me what command to use? >>> >>> blastn -query <(echo >>> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >>> -subject <(echo >>> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >>> >>> >>> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>>> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >>>> BlastPlus.pm >>>> Then to parse the results, you can read this: >>>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>>> Florent >>>> >>>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>>> >>>>> There is a module to run blast remotely >>>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>>> I think that it makes more sense for me to run blast locally. Is there >>>>> a way to let bioperl parse the output from my local command line >>>>> blast? >>>>> >>>>> >>>> >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 17:10:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 16:10:05 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> On Jun 6, 2010, at 1:29 PM, Dave Messina wrote: > > On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > >> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? >> >> We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? > > To anwer my own question, yes: > > http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob > > I copied the Perl script to here: > http://gist.github.com/427769 > > > If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. > > Dave For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: http://progit.org/book/ch7-2.html chris From David.Messina at sbc.su.se Sun Jun 6 17:27:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 23:27:50 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> Message-ID: > For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: > > http://progit.org/book/ch7-2.html Thanks for the pointer. Yeah, agreed on the date. The .gitattributes setup sounds good, particularly since it's automatic. Dave From pengyu.ut at gmail.com Sun Jun 6 18:29:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:29:39 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? Message-ID: There are many classes defined in Bio::Search, which is confusing to new users. Is there an inherentance graph and a dependency graph to help new users understand how they work? http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm For example, Bio::Search::HSP::GenericHSP is an implementation of Bio::Search::HSP::HSPI (if I'm correct), which is documented in the text. But I feel it would be much easier to see this relationship, if this is drawn graphically. -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 18:52:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:52:18 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? Message-ID: The following perl program generate tmp files at the current directory, which is annoying. Is there a way to put the tmp files in a tmp directory say /tmp? #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first.fa'); my $seq2 = Bio::Perl::read_sequence('second.fa'); print $seq1->seq, "\n"; print $seq2->seq, "\n"; my $blast_result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); -- Regards, Peng From David.Messina at sbc.su.se Sun Jun 6 19:18:28 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:18:28 +0200 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: Our class diagram is way out of date, but I believe the SearchIO part is still basically the same. http://www.bioperl.org/wiki/Class_Diagram > But I feel it would be much easier to see this relationship, if > this is drawn graphically. Absolutely. Speaking of which, this has long been on our to-do list ? would you be interested in taking a crack at this? There's also the Deobfuscator, which allows you to see all of the methods available to an object, regardless of how far up the inheritance tree the method originates: http://www.bioperl.org/wiki/Deobfuscator Dave From cjfields at illinois.edu Sun Jun 6 19:23:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:23:44 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: <13884F06-106A-4D1B-A4EB-B2AF23ACA400@illinois.edu> Peng, Within Bio::Search, the hierarchy is easy enough. I'll leave out the full namespace for now to make this easier. Each ResultI object represents a single report; it may have multiple HitI objects (the hits), which further have multiple HSPI objects (the high-scoring paired alignments). Depending on the parser and the need for additional methods, each ResultI/HitI/HSPI may be implemented generically (GenericResult/Hit/HSP) or more specifically (e.g. ModelHit), but all observe the common interface (ResultI/HitI/HSPI) methods. So, you can hierarchically iterate through all the data in a report as follows: while (my $result = $in->next_result) { # grab ResultI stuff here while (my $hit = $result->next_hit) { # grab HitI stuff here while (my $hsp = $hit->next_hsp) { # grab HSPI stuff here } } } Much of this is already in the HOWTO. Not sure how much more we can explain to you via email. If you are really concerned about the objects returned to look up specific methods, just check them with ref() to get the class. Re: module usage: the module usage and inheritance graph for BioPerl is extremely complicated, but if you have a checkout of the git repo you can generate some of these using the (completely unsupported, don't ask for help :) module_usage.pl script in the maintenance folder. I agree a simple graphic might help; feel free to contribute one if you have the time. chris On Jun 6, 2010, at 5:29 PM, Peng Yu wrote: > There are many classes defined in Bio::Search, which is confusing to > new users. Is there an inherentance graph and a dependency graph to > help new users understand how they work? > > http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm > > For example, Bio::Search::HSP::GenericHSP is an implementation of > Bio::Search::HSP::HSPI (if I'm correct), which is documented in the > text. But I feel it would be much easier to see this relationship, if > this is drawn graphically. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 19:32:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:32:57 +0200 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <2696B150-4993-4844-8FBB-A6A59944BE47@sbc.su.se> > Is there a way to put the tmp files in a > tmp directory say /tmp? Hmm, that probably shouldn't be happening. And indeed, BioPerl modules use File::Temp, which creates temp files in /tmp (or the equivalent). It's possible that it's a side effect of using Bio::Perl, which is composed of convenience methods for the beginner and is not really intended for serious use. For that reason, it may be writing in the current directory to minimize the possibility of write permissions errors which could be hard for a beginner to deal with. But that's only a guess. If you use Bio::SeqIO directly instead of read_seq and write_seq, and if you're still seeing temp files in your current directory, please let us know. Dave From cjfields at illinois.edu Sun Jun 6 19:37:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:37:32 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): Cleaning up temp files Temporary analysis files produced under a single factory instances can be unlinked by running $fac->cleanup; Tempfiles are generally not removed unless this method is explicitly called. "cleanup()" only unlinks "registered" files and databases. All temporary files are automatically registered; in particular, "anonymous" databases (such as $fac->Bio::Tools::Run::StandAloneBlastPlus->new( -db_data => 'myseqs.fas', -create => 1 ); without a "-db_name" specification) are registered for cleanup. Any file or database can be registered with an internal method: $fac->_register_temp_for_cleanup('testdb'); chris On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > The following perl program generate tmp files at the current > directory, which is annoying. Is there a way to put the tmp files in a > tmp directory say /tmp? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first.fa'); > my $seq2 = Bio::Perl::read_sequence('second.fa'); > print $seq1->seq, "\n"; > print $seq2->seq, "\n"; > > my $blast_result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sun Jun 6 20:33:59 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 19:33:59 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Chris, Sorry if I ask some question that is documented. I'm trying to read as much relevant document as I can, but I can't guarantee read everything that is relevant. I don't understand why "registered" files and databases are relevant for my use case. (BTW, what are "registered" files and what they are for?). I don't specify any database option when I call StandAloneBlastPlus in my example. If I call blast directly, I'll not get any tempfiles. Therefore, it is reasonable to expect not seeing any tempfiles with bioperl module as I understand StandAloneBlastPlus is a wrapper for blast+. What is the purpose of leaving temp files in the current directory? Is it better not to leave any tempfiles in the current directory by default? On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: > Peng, > > You really need to read all relevant documentation prior to firing off emails to the list. ?This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): > > ?Cleaning up temp files > ? ? ? Temporary analysis files produced under a single factory instances can > ? ? ? be unlinked by running > > ? ? ? ?$fac->cleanup; > > ? ? ? Tempfiles are generally not removed unless this method is explicitly > ? ? ? called. "cleanup()" only unlinks "registered" files and databases. All > ? ? ? temporary files are automatically registered; in particular, > ? ? ? "anonymous" databases (such as > > ? ? ? ?$fac->Bio::Tools::Run::StandAloneBlastPlus->new( > ? ? ? ? ?-db_data => 'myseqs.fas', > ? ? ? ? ?-create => 1 > ? ? ? ?); > > ? ? ? without a "-db_name" specification) are registered for cleanup. Any > ? ? ? file or database can be registered with an internal method: > > ? ? ? ?$fac->_register_temp_for_cleanup('testdb'); > > > > chris > > On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > >> The following perl program generate tmp files at the current >> directory, which is annoying. Is there a way to put the tmp files in a >> tmp directory say /tmp? >> >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::Tools::Run::StandAloneBlastPlus; >> use Bio::Perl; >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> my $seq1 = Bio::Perl::read_sequence('first.fa'); >> my $seq2 = Bio::Perl::read_sequence('second.fa'); >> print $seq1->seq, "\n"; >> print $seq2->seq, "\n"; >> >> my $blast_result=$factory->bl2seq(-method=>'blastn', >> ?-query=> $seq1, >> ?-subject=> $seq2 >> ); >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 21:25:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 20:25:50 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? Message-ID: It is not clear to me what is_remote is for in Bio::Location::Simple. Neither the perldoc or the following webpage discuss what it means. http://www.bioperl.org/wiki/BioPerl_Locations $ is_remote/main.pl Use of uninitialized value in print at is_remote/main.pl line 11. $ cat is_remote/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Location::Simple; my $location = Bio::Location::Simple->new(-start => 1, -end => 100, -strand => 1 ); print $location->is_remote(), "\n"; ######## I looked at the source code Simple.pm. I don't see is_remote() is defined in it. Is it deprecate? Should the document for it be removed? -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 23:03:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:03:21 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: On Jun 6, 2010, at 7:33 PM, Peng Yu wrote: > Chris, > > Sorry if I ask some question that is documented. I'm trying to read as > much relevant document as I can, but I can't guarantee read everything > that is relevant. I found the appropriate answer to your question within 2 minutes of reading your post, using a simple ack search (or grep if you prefer) on the StandAloneBlastPlus documentation, then used perldoc as previously mentioned. If you are unwilling to spend 5x that (only 10 minutes), and are unwilling to read the relevant documentation, and are so ready to admit it, why would you expect us to spend our (extremely valuable) time helping you? > I don't understand why "registered" files and databases are relevant > for my use case. (BTW, what are "registered" files and what they are > for?). I don't specify any database option when I call > StandAloneBlastPlus in my example. If I call blast directly, I'll not > get any tempfiles. Therefore, it is reasonable to expect not seeing > any tempfiles with bioperl module as I understand StandAloneBlastPlus > is a wrapper for blast+. What is the purpose of leaving temp files in > the current directory? Is it better not to leave any tempfiles in the > current directory by default? We have provided you an answer. You possibly have a point (why not remove the tempfiles), but you'll have to ask the module author(s) that for their reasoning. You can always make that suggestion, or perhaps even submit a patch, and work around the problem in the meantime. Contribute something constructive. We value that. But your posts at this point come across as rote complaining, not suggestions, and your general lack of appreciation/gratitude for any answers we've already given you does not exactly endear yourself to those whose time is very limited. chris > On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: >> Peng, >> >> You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): >> >> Cleaning up temp files >> Temporary analysis files produced under a single factory instances can >> be unlinked by running >> >> $fac->cleanup; >> >> Tempfiles are generally not removed unless this method is explicitly >> called. "cleanup()" only unlinks "registered" files and databases. All >> temporary files are automatically registered; in particular, >> "anonymous" databases (such as >> >> $fac->Bio::Tools::Run::StandAloneBlastPlus->new( >> -db_data => 'myseqs.fas', >> -create => 1 >> ); >> >> without a "-db_name" specification) are registered for cleanup. Any >> file or database can be registered with an internal method: >> >> $fac->_register_temp_for_cleanup('testdb'); >> >> >> >> chris >> >> On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: >> >>> The following perl program generate tmp files at the current >>> directory, which is annoying. Is there a way to put the tmp files in a >>> tmp directory say /tmp? >>> >>> #!/usr/bin/env perl >>> >>> use strict; >>> use warnings; >>> use Bio::Tools::Run::StandAloneBlastPlus; >>> use Bio::Perl; >>> >>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >>> >>> my $seq1 = Bio::Perl::read_sequence('first.fa'); >>> my $seq2 = Bio::Perl::read_sequence('second.fa'); >>> print $seq1->seq, "\n"; >>> print $seq2->seq, "\n"; >>> >>> my $blast_result=$factory->bl2seq(-method=>'blastn', >>> -query=> $seq1, >>> -subject=> $seq2 >>> ); >>> >>> -- >>> Regards, >>> Peng >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 23:21:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:21:56 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: Message-ID: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > It is not clear to me what is_remote is for in Bio::Location::Simple. > Neither the perldoc or the following webpage discuss what it means. > > http://www.bioperl.org/wiki/BioPerl_Locations As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. Huh. is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). That is one thing that needs additional documentation (see below). > $ is_remote/main.pl > Use of uninitialized value in print at is_remote/main.pl line 11. > $ cat is_remote/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::Location::Simple; > > my $location = Bio::Location::Simple->new(-start => 1, -end => 100, > -strand => 1 ); > > print $location->is_remote(), "\n"; > > ######## > I looked at the source code Simple.pm. I don't see is_remote() is > defined in it. Is it deprecate? Should the document for it be removed? > > -- > Regards, > Peng No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: Title : is_remote Usage : $is_remote_loc = $loc->is_remote() Function: Whether or not a location is a remote location. A location is said to be remote if it is on a different 'object' than the object which 'has' this location. Typically, features on a sequence will sometimes have a remote location, which means that the location of the feature is on a different sequence than the one that is attached to the feature. In such a case, $loc->seq_id will be different from $feat->seq_id (usually they will be the same). While this may sound weird, it reflects the location of the kind of AB18375:450-900 which can be found in GenBank/EMBL feature tables. Example : Returns : TRUE if the location is a remote location, and FALSE otherwise Args : Value to set to chris From pengyu.ut at gmail.com Sun Jun 6 23:46:04 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 22:46:04 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: > On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > >> It is not clear to me what is_remote is for in Bio::Location::Simple. >> Neither the perldoc or the following webpage discuss what it means. >> >> http://www.bioperl.org/wiki/BioPerl_Locations > > As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. ?Huh. > > is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). ?That is one thing that needs additional documentation (see below). > >> $ is_remote/main.pl >> Use of uninitialized value in print at is_remote/main.pl line 11. >> $ cat is_remote/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::Location::Simple; >> >> my $location = Bio::Location::Simple->new(-start => 1, -end => 100, >> ?-strand => 1 ); >> >> print $location->is_remote(), "\n"; >> >> ######## >> I looked at the source code Simple.pm. I don't see is_remote() is >> defined in it. Is it deprecate? Should the document for it be removed? >> >> -- >> Regards, >> Peng > > > No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. > > Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: > > ?Title ? : is_remote > ?Usage ? : $is_remote_loc = $loc->is_remote() > ?Function: Whether or not a location is a remote location. > > ? ? ? ? ? A location is said to be remote if it is on a different > ? ? ? ? ? 'object' than the object which 'has' this > ? ? ? ? ? location. Typically, features on a sequence will sometimes > ? ? ? ? ? have a remote location, which means that the location of > ? ? ? ? ? the feature is on a different sequence than the one that is > ? ? ? ? ? attached to the feature. In such a case, $loc->seq_id will > ? ? ? ? ? be different from $feat->seq_id (usually they will be the > ? ? ? ? ? same). > > ? ? ? ? ? While this may sound weird, it reflects the location of the > ? ? ? ? ? kind of AB18375:450-900 which can be found in GenBank/EMBL > ? ? ? ? ? feature tables. This explain sounds to abstract to me. Would you please give me some examples on what it means? -- Regards, Peng From cjfields at illinois.edu Mon Jun 7 00:46:13 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 23:46:13 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> On Jun 6, 2010, at 10:46 PM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: >> ...No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. >> >> Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: >> >> Title : is_remote >> Usage : $is_remote_loc = $loc->is_remote() >> Function: Whether or not a location is a remote location. >> >> A location is said to be remote if it is on a different >> 'object' than the object which 'has' this >> location. Typically, features on a sequence will sometimes >> have a remote location, which means that the location of >> the feature is on a different sequence than the one that is >> attached to the feature. In such a case, $loc->seq_id will >> be different from $feat->seq_id (usually they will be the >> same). >> >> While this may sound weird, it reflects the location of the >> kind of AB18375:450-900 which can be found in GenBank/EMBL >> feature tables. > > This explain sounds to abstract to me. Would you please give me some > examples on what it means? > > -- > Regards, > Peng Like it says; the Location indicated may not be found in the current location or group of locations, but may be located remotely (in another sequence). For instance: http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank BRCA2 has a split location, one located in this sequence record (AL137247), and one located remotely, in another sequence record (in AL445212.9): join(AL445212.9:83662..166657,101..841) In order to contain both of them together and have them splice correctly when needed, one must indicate that the sequence of interest for the location is not remote (is the current one) or is remote (and needs to be retrieved prior to additional work). chris From pengyu.ut at gmail.com Mon Jun 7 02:04:55 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 01:04:55 -0500 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? Message-ID: I have the following two sequences which don't have any hits. But the perl code gives num_hits =1 (see below). Is it a bug in parsing blast results? $ make blastn -query <(echo CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) -subject <(echo GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > HWI-EAS11X_10097_4_1_1523_15064.txt $ cat first1.fa >first1 CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC $ cat second1.fa >second1 GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG $ cat HWI-EAS11X_10097_4_1_1523_15064.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 ##### But the following code and output shows that there is one hit? $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; use Data::Dumper; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first1.fa'); my $seq2 = Bio::Perl::read_sequence('second1.fa'); my $result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; print 'ref($factory): ', ref($factory), "\n"; print 'ref($result): ', ref($result), "\n"; print "num_hits: ", $result->num_hits, "\n"; while(my $hit = $result->next_hit()) { print ref($hit), "\n"; print Dumper($hit), "\n"; } $ ./main.pl ref($factory): Bio::Tools::Run::StandAloneBlastPlus ref($result): Bio::Search::Result::BlastResult num_hits: 1 Bio::Search::Hit::BlastHit $VAR1 = bless( { '_hsps' => undef, '_iterator' => 0, '_description' => '', '_query_length' => '75', '_accession' => 'second1', '_length' => '75', '_name' => 'second1', '_rank' => 1, '_algorithm' => 'BLASTN', '_root_verbose' => 0, '_hsp_factory' => bless( { 'interface' => 'Bio::Search::HSP::HSPI', 'type' => 'Bio::Search::HSP::GenericHSP', '_loaded_types' => { 'Bio::Search::HSP::GenericHSP' => 1 }, '_root_verbose' => 0 }, 'Bio::Factory::ObjectFactory' ) }, 'Bio::Search::Hit::BlastHit' ); -- Regards, Peng From adsj at novozymes.com Mon Jun 7 11:04:44 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Mon, 07 Jun 2010 17:04:44 +0200 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels Message-ID: <87sk4ynasz.fsf@topper.koldfront.dk> Does an easy way exist to use unicode/utf-8 characters in labels on tracks with Bio::Graphics::Panel? A script like this: = = = #!/usr/bin/perl use strict; use warnings; use utf8; use Bio::Graphics::Panel; use Bio::SeqFeature::Generic; use File::Slurp; my $label='?-glucosidase'; my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); $panel->add_track($feature, -label=>$label); write_file('panel.png', $panel->png); = = = Gives me a panel.png that very much looks like the label was interpreted as something like, say, latin1, which makes sense from a quick search in the GD pod - it refers to stringFT() for using unicode characters, and a quick ack for stringFT() in Bio/Graphics/ only shows hits in DrawTransmembrane. This makes me guess the answer is no, but I thought I'd ask anyway, in case I overlooked something. Best regards, Adam -- Adam Sj?gren adsj at novozymes.com From scott at scottcain.net Mon Jun 7 11:42:28 2010 From: scott at scottcain.net (Scott Cain) Date: Mon, 7 Jun 2010 11:42:28 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Hi Adam, I don't know for sure, but I'm guessing that the reason BioGraphics doesn't use stringFT is because it requires that libgd be compiled with TrueType in order to work, and frequently, libgd isn't compiled with it, and it frequently gives people a hard time getting it compiled, and would add one more barrier to entry to people who want to use BioGraphics and GBrowse. Scott On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > ?Best regards, > > ? ? Adam > > -- > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Adam Sj?gren > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From hlapp at drycafe.net Mon Jun 7 12:14:35 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Mon, 7 Jun 2010 12:14:35 -0400 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> Message-ID: On Jun 7, 2010, at 12:46 AM, Chris Fields wrote: > For instance: > > http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank > > BRCA2 has a split location, one located in this sequence record > (AL137247), and one located remotely, in another sequence record (in > AL445212.9): I guess we should replace the sample (apparently bogus? I thought it was real.) in the doc with this one, so people can be expected to type this in at NCBI and go check it out for themselves. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From lincoln.stein at gmail.com Mon Jun 7 12:14:41 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 7 Jun 2010 12:14:41 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Unfortunately, Bio::Graphics doesn't take advantage of TrueType capabilities in GD. There were too many problems associated with installation. This could be added in some sort of generic fashion (invoke the truetype calls if GD supports it, and fallback to bitmap characters if not), but will require a lot of detailed changes to the source code. If anybody would like to volunteer to do this, I can explain the process. Lincoln On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, > -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > Best regards, > > Adam > > -- > Adam Sj?gren > adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From rondonbio at yahoo.com.br Mon Jun 7 12:33:54 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 09:33:54 -0700 (PDT) Subject: [Bioperl-l] How to do a megablast with Bioperl? Message-ID: <594075.68159.qm@web63705.mail.re1.yahoo.com> Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. thank you Rondon From David.Messina at sbc.su.se Mon Jun 7 13:30:16 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:30:16 +0200 Subject: [Bioperl-l] How to do a megablast with Bioperl? In-Reply-To: <594075.68159.qm@web63705.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> Message-ID: <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> > Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. http://www.bioperl.org/wiki/HOWTO:SearchIO From David.Messina at sbc.su.se Mon Jun 7 13:58:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:58:12 +0200 Subject: [Bioperl-l] Res: How to do a megablast with Bioperl? In-Reply-To: <952808.56069.qm@web63706.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: Hi Rondon, Please keep the list on the Cc so everyone can follow along. > Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From rondonbio at yahoo.com.br Mon Jun 7 14:01:23 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 11:01:23 -0700 (PDT) Subject: [Bioperl-l] Res: Res: How to do a megablast with Bioperl? In-Reply-To: References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: <466678.83185.qm@web63707.mail.re1.yahoo.com> Thank you! Rondon ________________________________ De: Dave Messina Para: Rondon Neto Cc: BioPerl List Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12 Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl? Hi Rondon, Please keep the list on the Cc so everyone can follow along. Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? > Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From armendarez77 at hotmail.com Mon Jun 7 14:27:33 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 11:27:33 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: Hello again, We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Thanks, Veronica > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: cjfields at illinois.edu > Date: Sat, 5 Jun 2010 07:34:34 -0500 > CC: armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > To: David.Messina at sbc.su.se > > Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > chris > > On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > > > Hi Veronica, > > > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > > > > Dave > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From David.Messina at sbc.su.se Mon Jun 7 14:41:00 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 20:41:00 +0200 Subject: [Bioperl-l] Fwd: Bio::Tools::Run::Primer3 vs Web Primer 3 References: Message-ID: <5FF5637B-2248-4E33-9F40-0048D268C7E3@sbc.su.se> On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From pengyu.ut at gmail.com Sun Jun 6 10:04:23 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 09:04:23 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: My perl is installed in a directory in my home. I think that bioperl will be installed in the directory in the perl directory in my home, right? On Sun, Jun 6, 2010 at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? I was confused. Yes, I meant git. I downloaded the files by the following commands. BTW, the following web address better be changed to 'Using_git". http://www.bioperl.org/wiki/Using_Subversion git clone git://github.com/bioperl/bioperl-live.git git clone git://github.com/bioperl/bioperl-run.git >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? I assume that you are asking the Build script. Please see the attachment. Let me know if you mean something else. -- Regards, Peng -------------- next part -------------- A non-text attachment was scrubbed... Name: Build Type: application/octet-stream Size: 1881 bytes Desc: not available URL: From dave at davemessina.com Mon Jun 7 14:33:28 2010 From: dave at davemessina.com (Dave Messina) Date: Mon, 7 Jun 2010 20:33:28 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From jessica.sun at gmail.com Mon Jun 7 15:12:42 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Mon, 7 Jun 2010 15:12:42 -0400 Subject: [Bioperl-l] Get variation included in genbank file Message-ID: Does any know how to include variation(dbSNP) in the genbank file format automatically using NM_ accession number using bioperl? thanks -- Jessica Jingping Sun From jason at bioperl.org Mon Jun 7 15:58:58 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 07 Jun 2010 12:58:58 -0700 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? In-Reply-To: References: Message-ID: <4C0D4F82.1060104@bioperl.org> You always get a hit with BL2Seq with the Query= and Subject= in the report - but you'll notice for your parsed example there are no HSPs. The fact that the bl2seq format reports the subject means you get a hit no matter what. What exactly are you trying to do this seems like a bad example. Just run a BLAST of a query against a database or look at the example reports in the t/data directory if you want to try and parse a BLAST report. If you are using short reads to do alignments to reference sequences you really don't want to be using BLAST anyways. -jason Peng Yu wrote, On 6/6/10 11:04 PM: > I have the following two sequences which don't have any hits. But the > perl code gives num_hits =1 (see below). Is it a bug in parsing blast > results? > > $ make > blastn -query<(echo > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) > -subject<(echo > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > >> HWI-EAS11X_10097_4_1_1523_15064.txt >> > $ cat first1.fa > >> first1 >> > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC > $ cat second1.fa > >> second1 >> > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG > > > $ cat HWI-EAS11X_10097_4_1_1523_15064.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > ***** No hits found ***** > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > ##### > > But the following code and output shows that there is one hit? > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > use Data::Dumper; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first1.fa'); > my $seq2 = Bio::Perl::read_sequence('second1.fa'); > > my $result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > $factory->cleanup; > > print 'ref($factory): ', ref($factory), "\n"; > print 'ref($result): ', ref($result), "\n"; > > print "num_hits: ", $result->num_hits, "\n"; > while(my $hit = $result->next_hit()) { > print ref($hit), "\n"; > print Dumper($hit), "\n"; > } > $ ./main.pl > ref($factory): Bio::Tools::Run::StandAloneBlastPlus > ref($result): Bio::Search::Result::BlastResult > num_hits: 1 > Bio::Search::Hit::BlastHit > $VAR1 = bless( { > '_hsps' => undef, > '_iterator' => 0, > '_description' => '', > '_query_length' => '75', > '_accession' => 'second1', > '_length' => '75', > '_name' => 'second1', > '_rank' => 1, > '_algorithm' => 'BLASTN', > '_root_verbose' => 0, > '_hsp_factory' => bless( { > 'interface' => > 'Bio::Search::HSP::HSPI', > 'type' => > 'Bio::Search::HSP::GenericHSP', > '_loaded_types' => { > > 'Bio::Search::HSP::GenericHSP' => 1 > }, > '_root_verbose' => 0 > }, 'Bio::Factory::ObjectFactory' ) > }, 'Bio::Search::Hit::BlastHit' ); > > > > From armendarez77 at hotmail.com Mon Jun 7 16:32:15 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 13:32:15 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? zlawson at blaze:~/source/bioperl-dev$ git-clone http://github.com/bioperl/bioperl-dev.git Initialized empty Git repository in /home/zlawson/source/bioperl-dev/bioperl-dev/.git/ Getting alternates list for http://github.com/bioperl/bioperl-dev.git Getting pack list for http://github.com/bioperl/bioperl-dev.git Getting index for pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 Getting index for pack f4ab7dabc9b978eefae48bfcbb60adf121d67544 Getting pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 which contains 773d8780bb982f858883cecca28cc45a919755bf error: Unable to get pack file http://github.com/bioperl/bioperl-dev.git/objects/pack/pack-8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767.pack transfer closed with 20247502 bytes remaining to read error: Unable to find 773d8780bb982f858883cecca28cc45a919755bf under http://github.com/bioperl/bioperl-dev.git Cannot obtain needed object 773d8780bb982f858883cecca28cc45a919755bf Thank you, Veronica > From: dave at davemessina.com > Date: Mon, 7 Jun 2010 20:33:28 +0200 > To: armendarez77 at hotmail.com > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > On Jun 7, 2010, at 8:27 PM, wrote: > > > Hello again, > > > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? > > Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: > > http://github.com/bioperl/bioperl-dev > > > Dave > > > > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > From: cjfields at illinois.edu > > > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From David.Messina at sbc.su.se Mon Jun 7 16:38:48 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 22:38:48 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> On Jun 7, 2010, at 10:32 PM, wrote: > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave From David.Messina at sbc.su.se Mon Jun 7 17:18:03 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 23:18:03 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: Message-ID: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Hi Jessica, > Does any know how to include variation(dbSNP) in the genbank file format > automatically using NM_ accession number using bioperl? I'm not sure I understand the question. As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. More information here: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook If that's not what you're after, could you clarify what you want to do? Dave From Russell.Smithies at agresearch.co.nz Mon Jun 7 17:27:51 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 09:27:51 +1200 Subject: [Bioperl-l] new record? In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Is there a class assignment due? I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From jay at jays.net Mon Jun 7 19:38:00 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 7 Jun 2010 18:38:00 -0500 Subject: [Bioperl-l] new record? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Message-ID: <7BEC3D64-7C3E-4F77-898A-103707DEAD3C@jays.net> On Jun 7, 2010, at 4:27 PM, Smithies, Russell wrote: > Is there a class assignment due? > I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) Join us in IRC for some peace and quiet. :) http://bioperl.org/wiki/IRC Jay Hannah Email Haters United Against Icky Email - Eww! http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Mon Jun 7 21:14:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 20:14:50 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? (Bio::Seq::Quality) Message-ID: Hello All, I want to retrieve the original encoded quality string. But it seems that Bio::Seq::Quality has already converted them into numerical array. Is there a method that can help retrieve the original encoded quality string such as "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb"? -- Regards, Peng $ cat main.fastq @HWI-EAS11X_10097:4:1:1909:9532#0/1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC + ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb @HWI-EAS11X_10097:4:1:1948:6460#0/1 CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGAT + dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBBB @HWI-EAS11X_10097:4:1:1986:2311#0/1 CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT + effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL] $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::SeqIO; my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq-illumina'); while (my $seq = $in->next_seq()) { print ref($seq), "\n"; print $seq->qual_text, "\n"; } $ ./main.pl Bio::Seq::Quality 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 25 20 30 12 20 34 Bio::Seq::Quality 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 31 2 2 2 2 2 Bio::Seq::Quality 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 25 29 12 26 12 29 From dimitark at bii.a-star.edu.sg Mon Jun 7 22:02:31 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 10:02:31 +0800 Subject: [Bioperl-l] about blast Message-ID: <4C0DA4B7.9000009@bii.a-star.edu.sg> Hi guys, i stumbled upon a problem. How can i run a psiblast with StandAloneBlastPlus without the query? I mean in normal psiblast there is a possibility that one can actually blast with the option '-in_pssm' instead of query. Of course first you need to run a psiblast with more than one iterations with option '-out_pssm' which produces the file which can be used by '-in_pssm'. Now in BioPerl i removed my query from the options and i got: ---------- MSG: Blast run: query data required, use -query STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::Tools::Run::StandAloneBlastPlus::run /usr/lib64/perl5/site_perl/5.10.0/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:216 ---------- Somehow it would be nice to check the method args in the module and when there is the option '-in_pssm' the check for query should be different(opposite to the one now). I hope i made it clear :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Mon Jun 7 22:59:34 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 14:59:34 +1200 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> A bit hacky and there's probably a "proper" way to do it but this works: while (my $seq = $in->next_dataset()) { print %{$seq}->{'-id'},"\n"; print %{$seq}->{'-raw_quality'},"\n"; print %{$seq}->{'-seq'},"\n"; print join ' ',@{ %{$seq}->{'-qual'}},"\n"; } > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Tuesday, 8 June 2010 1:15 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to print encoded fastq quality string? > (Bio::Seq::Quality) > > Hello All, > > I want to retrieve the original encoded quality string. But it seems > that Bio::Seq::Quality has already converted them into numerical > array. Is there a method that can help retrieve the original encoded > quality string such as > "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L > Tb"? > > -- > Regards, > Peng > > $ cat main.fastq > @HWI-EAS11X_10097:4:1:1909:9532#0/1 > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT > C > + > ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT > b > @HWI-EAS11X_10097:4:1:1948:6460#0/1 > CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA > T > + > dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB > B > @HWI-EAS11X_10097:4:1:1986:2311#0/1 > CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA > T > + > effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL > ] > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::SeqIO; > > my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- > illumina'); > > while (my $seq = $in->next_seq()) { > print ref($seq), "\n"; > print $seq->qual_text, "\n"; > } > $ ./main.pl > Bio::Seq::Quality > 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 > 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 > 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 > 25 20 30 12 20 34 > Bio::Seq::Quality > 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 > 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 > 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 > 31 2 2 2 2 2 > Bio::Seq::Quality > 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 > 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 > 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 > 25 29 12 26 12 29 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Mon Jun 7 23:17:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:17:08 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> Message-ID: <1B63775A-EC2A-4BC2-9F4D-47EDEB101B7B@illinois.edu> Yes, this is the way to currently do it from the hash ref, but the actual key/value pairings there may change depending on a few things. I'm probably going to get something started up amongst the various Bio* to see if we can standardize generically parsing this data into somewhat standardized data structures, both for downstream use (creating objects) and other purposes. The current k/v pairs won't change until that happens, but if we manage to come up with some standard I assume we will change them accordingly. chris On Jun 7, 2010, at 9:59 PM, Smithies, Russell wrote: > A bit hacky and there's probably a "proper" way to do it but this works: > > > while (my $seq = $in->next_dataset()) { > print %{$seq}->{'-id'},"\n"; > print %{$seq}->{'-raw_quality'},"\n"; > print %{$seq}->{'-seq'},"\n"; > print join ' ',@{ %{$seq}->{'-qual'}},"\n"; > } > > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Tuesday, 8 June 2010 1:15 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to print encoded fastq quality string? >> (Bio::Seq::Quality) >> >> Hello All, >> >> I want to retrieve the original encoded quality string. But it seems >> that Bio::Seq::Quality has already converted them into numerical >> array. Is there a method that can help retrieve the original encoded >> quality string such as >> "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L >> Tb"? >> >> -- >> Regards, >> Peng >> >> $ cat main.fastq >> @HWI-EAS11X_10097:4:1:1909:9532#0/1 >> CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT >> C >> + >> ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT >> b >> @HWI-EAS11X_10097:4:1:1948:6460#0/1 >> CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA >> T >> + >> dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB >> B >> @HWI-EAS11X_10097:4:1:1986:2311#0/1 >> CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA >> T >> + >> effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL >> ] >> $ cat main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::SeqIO; >> >> my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- >> illumina'); >> >> while (my $seq = $in->next_seq()) { >> print ref($seq), "\n"; >> print $seq->qual_text, "\n"; >> } >> $ ./main.pl >> Bio::Seq::Quality >> 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 >> 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 >> 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 >> 25 20 30 12 20 34 >> Bio::Seq::Quality >> 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 >> 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 >> 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 >> 31 2 2 2 2 2 >> Bio::Seq::Quality >> 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 >> 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 >> 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 >> 25 29 12 26 12 29 >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From dimitark at bii.a-star.edu.sg Mon Jun 7 23:22:04 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 11:22:04 +0800 Subject: [Bioperl-l] more problems with blast Message-ID: <4C0DB75C.6010901@bii.a-star.edu.sg> hi guys, im sorry but i got another problem. So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: ---- MSG: no data for midline Query ------------------------------------------------------------ STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 ---- so there are couple of places where the alignments look like the following (i put here only the problem part): --- Query ------------------------------------------------------------ Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 --- My code for running psiblast: ---- my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); system(@args) == 0 or die "system @args failed: $!"; my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); $blastreport=$report->next_result; ---- Thats not nice :) But how can i go around that stuff so i can get the file parsed? Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From cjfields at illinois.edu Mon Jun 7 23:44:02 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:44:02 -0500 Subject: [Bioperl-l] more problems with blast In-Reply-To: <4C0DB75C.6010901@bii.a-star.edu.sg> References: <4C0DB75C.6010901@bii.a-star.edu.sg> Message-ID: <37AA42E4-1783-47DA-853E-9D8C90FCFE81@illinois.edu> This parsing issue is due to changes in BLAST+, but should be fixed in the latest github code. Can you run a clean checkout and test this? chris On Jun 7, 2010, at 10:22 PM, Dimitar Kenanov wrote: > hi guys, > im sorry but i got another problem. > So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: > ---- > MSG: no data for midline Query ------------------------------------------------------------ > STACK: Error::throw > STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 > STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 > ---- > > so there are couple of places where the alignments look like the following (i put here only the problem part): > --- > Query ------------------------------------------------------------ > > Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 > --- > > My code for running psiblast: > ---- > my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); > system(@args) == 0 or die "system @args failed: $!"; > my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); > $blastreport=$report->next_result; > ---- > > Thats not nice :) But how can i go around that stuff so i can get the file parsed? > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Tue Jun 8 07:35:23 2010 From: jay at jays.net (Jay Hannah) Date: Tue, 8 Jun 2010 06:35:23 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <20100608104921.493F1422B7@smtp1.rs.github.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> Message-ID: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb > http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb > Author: Florent Angly > Date: 2010-06-08 (Tue, 08 Jun 2010) > > Merge branch 'master' of github.com:bioperl/bioperl-live I'm fascinated by these commits, and my git-fu is still weak. I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). Am I reading that correctly? I find that history very confusing. In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). git remote add rkhaja git://github.com/rkhaja/bioperl-live.git git fetch rkhaja git checkout -b rkhaja-merge rkhaja/master git rebase master git checkout master git merge rkhaja-merge git branch -d rkhaja-merge That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. Thanks, Jay Hannah seeker of git enlightenment http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 09:07:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 15:07:29 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276002449.6704.27.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 06:35 -0500, Jay Hannah wrote: > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. Yes, that's just what's happening here. > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. So the question if this is the "better" way of doing things depends on what you're aiming for. At Samba, we have decided in trying to keep the history linear by using the rebase method you outlined above. This is mostly based on the reasoning that nobody cares about our private git trees we have on our development machines. If you're actively developing code in multiple public branches, like e.g. the Linux kernel does, it might be interesting to preserve where these branches split and merge. Personally, I like the readable history the rebasing gives me. Additionally, if you write only a few patches, and pull often, you'll end up with a high "merge commit"/"real commit" ratio, aka "noise". :) Hope this helps, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From cjfields at illinois.edu Tue Jun 8 09:55:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 08:55:51 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 6:35 AM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live > > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. Yes, via git pull. > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? This is probably the best way, sure, to avoid those additional 'Merge branch' messages. The rebase is the key part, which is where one is just setting the current branch pointer to point to the same place as master HEAD. So, what would be the workflow for a simple commit like florent's? Or one from a topic branch? Maybe something to add to the 'Using git' page? > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah I think we all are :> chris From hlapp at drycafe.net Tue Jun 8 11:44:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Tue, 8 Jun 2010 11:44:46 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Tue Jun 8 11:59:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 10:59:24 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <26543D06-6211-498D-A6BE-89E99705074C@illinois.edu> On Jun 8, 2010, at 10:44 AM, Hilmar Lapp wrote: > On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge > > > When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. > > -hilmar Good idea. Also, one of the key distinctions we also need to make clear is how branches differ on svn and git (and why it is easy to branch with git). However, I don't want to necessarily repeat documentation that is better described elsewhere, so maybe a brief explanation of the above with links to Pro Git (http://progit.org/book/) or other resources? Can't recommend that book enough... chris From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 12:25:51 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 18:25:51 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276014351.6704.36.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 11:44 -0400, Hilmar Lapp wrote: > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git This adds rkhaja's github fork of bioperl-live as a remote. You only need to do this once per repository (read "checkout") and remote. If this was a new repository, it now has the "origin" remote pointing to where it was cloned from and the "rkhaja" remote pointing to rkhaja's fork. > > git fetch rkhaja This gets the changes from the rkhaja remote. If you want to keep a lot of different remotes up-to-date, I suggest using git remote update instead, which updates all the remotes. > > git checkout -b rkhaja-merge rkhaja/master This creates a new branch called "rkhaja-merge" based on the "master" branch in the "rkhaja" remote, and changes to that branch. > > git rebase master This basically removes all the patches from the current branch up to the point where it diverged from the "master" branch, forwards the current branch to the tip of the "master" branch and then reapplies all the patches it removed, so they're now on top of the "master" branch. This allows you to do a fast-forward push of them later (read, no need to do a merge commit). > > git checkout master This switches back to the master branch. > > git merge rkhaja-merge This now merges over the changes of the "rkhaja-merge" branch. As all of these changes are on top of the current branch, they can be fast-forwarded to, no merge commit is created. > > git branch -d rkhaja-merge This removes the rkhaja-merge branch, to clean up. git branch -d will refuse to delete a branch that has objects not in your current branch, forcing you to use git br -D instead if you really know what you're doing. > > When this gets adopted and documented, it'd be really great to > annotate each line with what it is motivated by (i.e., why do this), > as otherwise this sequence reads rather obtuse to probably most people > except the fully git initiated. HTH, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From florent.angly at gmail.com Tue Jun 8 19:53:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Wed, 09 Jun 2010 09:53:56 +1000 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <4C0ED814.5070004@gmail.com> For the record, this is what I have been doing: I have my git clone to get my local git repository. I make changes to the BioPerl code, then git commit I make more changes, then git commit Regularly, I do git pull to keep my repository up-to-date Eventually, I git push my changes upstream. I am not too familiar with git but I think this is essentially the easy steps describes on the wiki. If it's better to explicitely make a new branch (not 'master'), let me know. I just don't see the advantage for me. Florent On 06/08/2010 09:35 PM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live >> > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. > > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From pengyu.ut at gmail.com Tue Jun 8 21:00:07 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 20:00:07 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? Message-ID: Hi, I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following command. blastn -task blastn -query first.fa -subject second.fa I tried the following code, which works like without the '-task blastn' option. Would you please let me know how to supply the option in Bio::Tools::Run::StandAloneBlastPlus? my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $result=$factory->bl2seq( -method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; Thank you for you help! -- Regards, Peng From razi.khaja at gmail.com Tue Jun 8 21:18:07 2010 From: razi.khaja at gmail.com (Razi Khaja) Date: Tue, 8 Jun 2010 21:18:07 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <4C0ED814.5070004@gmail.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> <4C0ED814.5070004@gmail.com> Message-ID: This is awesome! Looks like my contributions became a topic of conversation overnight. Razi On Tue, Jun 8, 2010 at 7:53 PM, Florent Angly wrote: > For the record, this is what I have been doing: > I have my git clone to get my local git repository. > I make changes to the BioPerl code, then git commit > I make more changes, then git commit > Regularly, I do git pull to keep my repository up-to-date > Eventually, I git push my changes upstream. > > I am not too familiar with git but I think this is essentially the easy > steps describes on the wiki. If it's better to explicitely make a new branch > (not 'master'), let me know. I just don't see the advantage for me. > > Florent > > > > On 06/08/2010 09:35 PM, Jay Hannah wrote: > >> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> >> >>> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >>> >>> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >>> Author: Florent Angly >>> Date: 2010-06-08 (Tue, 08 Jun 2010) >>> >>> Merge branch 'master' of github.com:bioperl/bioperl-live >>> >>> >> I'm fascinated by these commits, and my git-fu is still weak. >> >> I think what's happening here is that any time anyone commits anything >> fangly is merging those changes into his own repo, which he then merges back >> to bioperl/bioperl-live again. >> >> So fangly's procedure (whatever it is), is re-committing other people's >> commits? Making history twice as long with (empty?) "Merge branch 'master'" >> messages? The diff of these commits reports that fangly is the author of >> other people's changes(!) yet somehow git annotate still reports that >> t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday >> (correct). >> >> Am I reading that correctly? I find that history very confusing. >> >> In #moose they taught me to merge other people's commits using the >> procedure below. This is what I did yesterday to merge rkhaja/bioperl-live >> into bioperl/bioperl-live (per conversations in IRC). >> >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge >> >> That procedure did not create a "Merge branch 'master'" commit. So is that >> procedure cleaner than fangly's? Is it the rebase command that makes the >> difference? >> >> I'm not picking on fangly here, I'm simply struggling to improve my own >> git-fu. >> >> Thanks, >> >> Jay Hannah >> seeker of git enlightenment >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 8 21:28:03 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 13:28:03 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Have you read the docs? http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Wednesday, 9 June 2010 1:00 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > Hi, > > I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > command. > > blastn -task blastn -query first.fa -subject second.fa > > > I tried the following code, which works like without the '-task > blastn' option. Would you please let me know how to supply the option > in Bio::Tools::Run::StandAloneBlastPlus? > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > my $result=$factory->bl2seq( > -method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > $factory->cleanup; > > Thank you for you help! > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 8 22:20:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 21:20:39 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell wrote: > Have you read the docs? > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Yes. But they don't say how to supply option '-task blastn' to blastn. I tried my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); But it doesn't work. > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > --Russell > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> Hi, >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> command. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> I tried the following code, which works like without the '-task >> blastn' option. Would you please let me know how to supply the option >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> ? my $result=$factory->bl2seq( >> ? ? -method=>'blastn', >> ? ? -query=> $seq1, >> ? ? -subject=> $seq2 >> ? ); >> ? $factory->cleanup; >> >> Thank you for you help! >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:09:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:09:33 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Why are you trying to supply option '-task blastn' ?? I think the docs make it fairly clear that this is not one of the available parameters. The option " -method => 'blastn' " (as detailed in the docs) is the one to use. http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html # create a factory: $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); # do a bl2seq $fac->bl2seq( -method => 'blastn', -query => $seq_object_1, -subject => $seq_object_2 ); Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 2:21 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > wrote: > > Have you read the docs? > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > > Yes. But they don't say how to supply option '-task blastn' to blastn. I > tried > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); > > But it doesn't work. > > > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > > I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > > > --Russell > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> To: bioperl-l at lists.open-bio.org > >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> Hi, > >> > >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > >> command. > >> > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> > >> I tried the following code, which works like without the '-task > >> blastn' option. Would you please let me know how to supply the option > >> in Bio::Tools::Run::StandAloneBlastPlus? > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> ? my $result=$factory->bl2seq( > >> ? ? -method=>'blastn', > >> ? ? -query=> $seq1, > >> ? ? -subject=> $seq2 > >> ? ); > >> ? $factory->cleanup; > >> > >> Thank you for you help! > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:12:12 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:12:12 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: See the help page of blastn. By default blastn use the option "-task megablast", which is less sensitive than the option "-task blastn". $ blastn -help .... -task Task to execute Default = `megablast' ... On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell wrote: > Why are you trying to supply option '-task blastn' ?? > I think the docs make it fairly clear that this is not one of the available parameters. > The option " -method => 'blastn' " (as detailed in the docs) is the one to use. > http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > # create a factory: > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > # do a bl2seq > ?$fac->bl2seq( -method => 'blastn', > ? ? ? ? ? ? ? -query => $seq_object_1, > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. > > --Russell > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> wrote: >> > Have you read the docs? >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. I >> tried >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); >> >> But it doesn't work. >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. >> >> > --Russell >> > >> >> -----Original Message----- >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> To: bioperl-l at lists.open-bio.org >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> Hi, >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> >> command. >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> blastn' option. Would you please let me know how to supply the option >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> ? my $result=$factory->bl2seq( >> >> ? ? -method=>'blastn', >> >> ? ? -query=> $seq1, >> >> ? ? -subject=> $seq2 >> >> ? ); >> >> ? $factory->cleanup; >> >> >> >> Thank you for you help! >> >> >> >> -- >> >> Regards, >> >> Peng >> >> _______________________________________________ >> >> Bioperl-l mailing list >> >> Bioperl-l at lists.open-bio.org >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > ======================================================================= >> > Attention: The information contained in this message and/or attachments >> > from AgResearch Limited is intended only for the persons or entities >> > to which it is addressed and may contain confidential and/or privileged >> > material. Any review, retransmission, dissemination or other use of, or >> > taking of any action in reliance upon, this information by persons or >> > entities other than the intended recipients is prohibited by AgResearch >> > Limited. If you have received this message in error, please notify the >> > sender immediately. >> > ======================================================================= >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:31:54 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:31:54 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:12 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > See the help page of blastn. By default blastn use the option "-task > megablast", which is less sensitive than the option "-task blastn". > > $ blastn -help > .... > -task 'megablast' 'vecscreen' > > Task to execute > Default = `megablast' > ... > > On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > wrote: > > Why are you trying to supply option '-task blastn' ?? > > I think the docs make it fairly clear that this is not one of the > available parameters. > > The option " -method => 'blastn' " (as detailed in the docs) is the one > to use. > > http://doc.bioperl.org/releases/bioperl-current/bioperl- > run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > > > # create a factory: > > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > > > # do a bl2seq > > ?$fac->bl2seq( -method => 'blastn', > > ? ? ? ? ? ? ? -query => $seq_object_1, > > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is > completely broken (which is possible as it's development code) something > similar to the example should work. > > > > --Russell > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> wrote: > >> > Have you read the docs? > >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> > >> Yes. But they don't say how to supply option '-task blastn' to blastn. > I > >> tried > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > task='blastn'); > >> > >> But it doesn't work. > >> > >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > >> > >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > problem. > >> > >> > --Russell > >> > > >> >> -----Original Message----- > >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> To: bioperl-l at lists.open-bio.org > >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> Hi, > >> >> > >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > following > >> >> command. > >> >> > >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> > >> >> > >> >> I tried the following code, which works like without the '-task > >> >> blastn' option. Would you please let me know how to supply the > option > >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> ? my $result=$factory->bl2seq( > >> >> ? ? -method=>'blastn', > >> >> ? ? -query=> $seq1, > >> >> ? ? -subject=> $seq2 > >> >> ? ); > >> >> ? $factory->cleanup; > >> >> > >> >> Thank you for you help! > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> >> _______________________________________________ > >> >> Bioperl-l mailing list > >> >> Bioperl-l at lists.open-bio.org > >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > ======================================================================= > >> > Attention: The information contained in this message and/or > attachments > >> > from AgResearch Limited is intended only for the persons or entities > >> > to which it is addressed and may contain confidential and/or > privileged > >> > material. Any review, retransmission, dissemination or other use of, > or > >> > taking of any action in reliance upon, this information by persons or > >> > entities other than the intended recipients is prohibited by > AgResearch > >> > Limited. If you have received this message in error, please notify > the > >> > sender immediately. > >> > > ======================================================================= > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:36:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:36:50 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: I made a wrapper. Then I call bl2seq in bioperl. The result changes, which means bioperl call blastn rather than bl2seq in the command line. The results are consistent between bioperl and blastn command line. $ cat `which blastn` #!/usr/bin/env bash /myinstallation/blastn -task blastn $@ On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell wrote: > Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) > > If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? > When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " > > > > --Russell > > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> See the help page of blastn. By default blastn use the option "-task >> megablast", which is less sensitive than the option "-task blastn". >> >> $ blastn -help >> .... >> ?-task > ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> ? ? ?Task to execute >> ? ? ?Default = `megablast' >> ... >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> wrote: >> > Why are you trying to supply option '-task blastn' ?? >> > I think the docs make it fairly clear that this is not one of the >> available parameters. >> > The option " -method => 'blastn' " (as detailed in the docs) is the one >> to use. >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> > >> > # create a factory: >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> > >> > # do a bl2seq >> > ?$fac->bl2seq( -method => 'blastn', >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is >> completely broken (which is possible as it's development code) something >> similar to the example should work. >> > >> > --Russell >> > >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> To: Smithies, Russell >> >> Cc: bioperl-l at lists.open-bio.org >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> wrote: >> >> > Have you read the docs? >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. >> I >> >> tried >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> task='blastn'); >> >> >> >> But it doesn't work. >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my >> problem. >> >> >> >> > --Russell >> >> > >> >> >> -----Original Message----- >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> Hi, >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the >> following >> >> >> command. >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> >> blastn' option. Would you please let me know how to supply the >> option >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> ? my $result=$factory->bl2seq( >> >> >> ? ? -method=>'blastn', >> >> >> ? ? -query=> $seq1, >> >> >> ? ? -subject=> $seq2 >> >> >> ? ); >> >> >> ? $factory->cleanup; >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> >> _______________________________________________ >> >> >> Bioperl-l mailing list >> >> >> Bioperl-l at lists.open-bio.org >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > >> ======================================================================= >> >> > Attention: The information contained in this message and/or >> attachments >> >> > from AgResearch Limited is intended only for the persons or entities >> >> > to which it is addressed and may contain confidential and/or >> privileged >> >> > material. Any review, retransmission, dissemination or other use of, >> or >> >> > taking of any action in reliance upon, this information by persons or >> >> > entities other than the intended recipients is prohibited by >> AgResearch >> >> > Limited. If you have received this message in error, please notify >> the >> >> > sender immediately. >> >> > >> ======================================================================= >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:47:25 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:47:25 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> I really think you need to spend more time reading and less time emailing. http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 The BLAST+ package includes the ability to compare two or more sequences to each other in each of the search programs. Using the -subject option instead of the -db will cause any of the search programs to behave as a BLAST 2 sequences program. This eliminates the need for the BLAST 2 sequences utility (bl2seq) included in the traditional BLAST package. While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a wrapper as there's no longer a bl2seq executable as there was with the older version of BLAST. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:37 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I made a wrapper. Then I call bl2seq in bioperl. The result changes, > which means bioperl call blastn rather than bl2seq in the command > line. The results are consistent between bioperl and blastn command > line. > > $ cat `which blastn` > #!/usr/bin/env bash > > /myinstallation/blastn -task blastn $@ > > > On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > wrote: > > Without digging thru the code, I think the developer can call the > parameters whatever he likes and if he wants to use "-method " instead of > "-task " there's probably a good reason (right MAJ?) > > > > If you write code as in the docs, does it give you the same results as > when you run bl2seq manually from the command line? > > When you run it via BioPerl, does " -method => 'blastn' " give you a > different result to " -method => 'megablast' " or " -method => 'dc- > megablast' " > > > > > > > > --Russell > > > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> See the help page of blastn. By default blastn use the option "-task > >> megablast", which is less sensitive than the option "-task blastn". > >> > >> $ blastn -help > >> .... > >> ?-task megablast' > >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> ? ? ?Task to execute > >> ? ? ?Default = `megablast' > >> ... > >> > >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> wrote: > >> > Why are you trying to supply option '-task blastn' ?? > >> > I think the docs make it fairly clear that this is not one of the > >> available parameters. > >> > The option " -method => 'blastn' " (as detailed in the docs) is the > one > >> to use. > >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> > > >> > # create a factory: > >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> > > >> > # do a bl2seq > >> > ?$fac->bl2seq( -method => 'blastn', > >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> > > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus > is > >> completely broken (which is possible as it's development code) > something > >> similar to the example should work. > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> wrote: > >> >> > Have you read the docs? > >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> > >> >> Yes. But they don't say how to supply option '-task blastn' to > blastn. > >> I > >> >> tried > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> task='blastn'); > >> >> > >> >> But it doesn't work. > >> >> > >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > objects? > >> >> > >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> problem. > >> >> > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option > from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> Hi, > >> >> >> > >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> following > >> >> >> command. > >> >> >> > >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> > >> >> >> > >> >> >> I tried the following code, which works like without the '-task > >> >> >> blastn' option. Would you please let me know how to supply the > >> option > >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> ? my $result=$factory->bl2seq( > >> >> >> ? ? -method=>'blastn', > >> >> >> ? ? -query=> $seq1, > >> >> >> ? ? -subject=> $seq2 > >> >> >> ? ); > >> >> >> ? $factory->cleanup; > >> >> >> > >> >> >> Thank you for you help! > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> >> _______________________________________________ > >> >> >> Bioperl-l mailing list > >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> > > >> ======================================================================= > >> >> > Attention: The information contained in this message and/or > >> attachments > >> >> > from AgResearch Limited is intended only for the persons or > entities > >> >> > to which it is addressed and may contain confidential and/or > >> privileged > >> >> > material. Any review, retransmission, dissemination or other use > of, > >> or > >> >> > taking of any action in reliance upon, this information by persons > or > >> >> > entities other than the intended recipients is prohibited by > >> AgResearch > >> >> > Limited. If you have received this message in error, please notify > >> the > >> >> > sender immediately. > >> >> > > >> ======================================================================= > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:58:09 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:58:09 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> I've lost track of what your main problem is, please restate your original question? I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or what part of the documentation is incorrect? --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:53 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I knew this I should use blastn as bl2seq command is not available in > BLAST+. I'm not sure what you think I should read? > > On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > wrote: > > I really think you need to spend more time reading and less time > emailing. > > > > http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > > The BLAST+ package includes the ability to compare two or more sequences > to each other in each of the search programs. Using the -subject ?option > instead of the -db will cause any of the search programs to behave as a > BLAST 2 sequences program. This eliminates the need for the BLAST 2 > sequences utility (bl2seq) included in the traditional BLAST package. > > > > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a > wrapper as there's no longer a bl2seq executable as there was with the > older version of BLAST. > > > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I made a wrapper. Then I call bl2seq in bioperl. The result changes, > >> which means bioperl call blastn rather than bl2seq in the command > >> line. The results are consistent between bioperl and blastn command > >> line. > >> > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> wrote: > >> > Without digging thru the code, I think the developer can call the > >> parameters whatever he likes and if he wants to use "-method " instead > of > >> "-task " there's probably a good reason (right MAJ?) > >> > > >> > If you write code as in the docs, does it give you the same results > as > >> when you run bl2seq manually from the command line? > >> > When you run it via BioPerl, does " -method => 'blastn' " give you a > >> different result to " -method => 'megablast' " or " -method => 'dc- > >> megablast' " > >> > > >> > > >> > > >> > --Russell > >> > > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> See the help page of blastn. By default blastn use the option "-task > >> >> megablast", which is less sensitive than the option "-task blastn". > >> >> > >> >> $ blastn -help > >> >> .... > >> >> ?-task >> megablast' > >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> ? ? ?Task to execute > >> >> ? ? ?Default = `megablast' > >> >> ... > >> >> > >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> wrote: > >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> > I think the docs make it fairly clear that this is not one of the > >> >> available parameters. > >> >> > The option " -method => 'blastn' " (as detailed in the docs) is > the > >> one > >> >> to use. > >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> > > >> >> > # create a factory: > >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> > > >> >> > # do a bl2seq > >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> > > >> >> > Unless I've missed something and > Bio::Tools::Run::StandAloneBlastPlus > >> is > >> >> completely broken (which is possible as it's development code) > >> something > >> >> similar to the example should work. > >> >> > > >> >> > --Russell > >> >> > > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Have you read the docs? > >> >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> > >> >> >> Yes. But they don't say how to supply option '-task blastn' to > >> blastn. > >> >> I > >> >> >> tried > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> task='blastn'); > >> >> >> > >> >> >> But it doesn't work. > >> >> >> > >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > >> objects? > >> >> >> > >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> >> problem. > >> >> >> > >> >> >> > --Russell > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > option > >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> Hi, > >> >> >> >> > >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> >> following > >> >> >> >> command. > >> >> >> >> > >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> > >> >> >> >> > >> >> >> >> I tried the following code, which works like without the '- > task > >> >> >> >> blastn' option. Would you please let me know how to supply the > >> >> option > >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> ? ); > >> >> >> >> ? $factory->cleanup; > >> >> >> >> > >> >> >> >> Thank you for you help! > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> >> _______________________________________________ > >> >> >> >> Bioperl-l mailing list > >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> > > >> >> > ======================================================================= > >> >> >> > Attention: The information contained in this message and/or > >> >> attachments > >> >> >> > from AgResearch Limited is intended only for the persons or > >> entities > >> >> >> > to which it is addressed and may contain confidential and/or > >> >> privileged > >> >> >> > material. Any review, retransmission, dissemination or other > use > >> of, > >> >> or > >> >> >> > taking of any action in reliance upon, this information by > persons > >> or > >> >> >> > entities other than the intended recipients is prohibited by > >> >> AgResearch > >> >> >> > Limited. If you have received this message in error, please > notify > >> >> the > >> >> >> > sender immediately. > >> >> >> > > >> >> > ======================================================================= > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 00:10:46 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 16:10:46 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 4:10 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I think it is better to document the mapping between blast options and > bioperl options. I searched 'task', but I don't find anything. Thank > you for letting me know. > > On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell > wrote: > > Bioperl's equivalent is blastn -task blastn -query first.fa -subject > second.fa > > We've just used 'method' instead of 'task'. > > > > You can always use the legacy_blast.pl script that comes with blast+ > then you can just use your old bl2seq commands. > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 4:03 p.m. > >> To: Smithies, Russell > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I've solved my problem by using the wrapper. Note that this is a hack > >> as it is not done in bioperl. > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> Anyway, I restate my original problem below. > >> > >> bioperl's bl2seq by default is equivalent to the following command. > >> blastn -query first.fa -subject second.fa > >> > >> I want to add the option '-task blastn'. > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> But I don't find such option in bioperl's bl2seq. > >> > >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell > >> wrote: > >> > I've lost track of what your main problem is, please restate your > >> original question? > >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or > what > >> part of the documentation is incorrect? > >> > > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. > >> >> To: Smithies, Russell > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> I knew this I should use blastn as bl2seq command is not available > in > >> >> BLAST+. I'm not sure what you think I should read? > >> >> > >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > >> >> wrote: > >> >> > I really think you need to spend more time reading and less time > >> >> emailing. > >> >> > > >> >> > > >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > >> >> > The BLAST+ package includes the ability to compare two or more > >> sequences > >> >> to each other in each of the search programs. Using the -subject > >> ?option > >> >> instead of the -db will cause any of the search programs to behave > as a > >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 > >> >> sequences utility (bl2seq) included in the traditional BLAST > package. > >> >> > > >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just > a > >> >> wrapper as there's no longer a bl2seq executable as there was with > the > >> >> older version of BLAST. > >> >> > > >> >> > > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result > changes, > >> >> >> which means bioperl call blastn rather than bl2seq in the command > >> >> >> line. The results are consistent between bioperl and blastn > command > >> >> >> line. > >> >> >> > >> >> >> $ cat `which blastn` > >> >> >> #!/usr/bin/env bash > >> >> >> > >> >> >> /myinstallation/blastn -task blastn $@ > >> >> >> > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Without digging thru the code, I think the developer can call > the > >> >> >> parameters whatever he likes and if he wants to use "-method " > >> instead > >> >> of > >> >> >> "-task " there's probably a good reason (right MAJ?) > >> >> >> > > >> >> >> > If you write code as in the docs, does it give you the same > >> results > >> >> as > >> >> >> when you run bl2seq manually from the command line? > >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give > you > >> a > >> >> >> different result to " -method => 'megablast' " or " -method => > 'dc- > >> >> >> megablast' " > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > --Russell > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> >> >> To: Smithies, Russell > >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > >> option > >> >> >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> See the help page of blastn. By default blastn use the option > "- > >> task > >> >> >> >> megablast", which is less sensitive than the option "-task > >> blastn". > >> >> >> >> > >> >> >> >> $ blastn -help > >> >> >> >> .... > >> >> >> >> ?-task 'dc- > >> >> >> megablast' > >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> >> >> ? ? ?Task to execute > >> >> >> >> ? ? ?Default = `megablast' > >> >> >> >> ... > >> >> >> >> > >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> >> >> wrote: > >> >> >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> >> >> > I think the docs make it fairly clear that this is not one > of > >> the > >> >> >> >> available parameters. > >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) > is > >> >> the > >> >> >> one > >> >> >> >> to use. > >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> >> >> > > >> >> >> >> > # create a factory: > >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> > > >> >> >> >> > # do a bl2seq > >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> >> >> > > >> >> >> >> > Unless I've missed something and > >> >> Bio::Tools::Run::StandAloneBlastPlus > >> >> >> is > >> >> >> >> completely broken (which is possible as it's development code) > >> >> >> something > >> >> >> >> similar to the example should work. > >> >> >> >> > > >> >> >> >> > --Russell > >> >> >> >> > > >> >> >> >> > > >> >> >> >> >> -----Original Message----- > >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> >> >> To: Smithies, Russell > >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task > blastn > >> >> option > >> >> >> >> from > >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> > >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> >> >> wrote: > >> >> >> >> >> > Have you read the docs? > >> >> >> >> >> > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> >> >> > >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' > to > >> >> >> blastn. > >> >> >> >> I > >> >> >> >> >> tried > >> >> >> >> >> > >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> >> >> task='blastn'); > >> >> >> >> >> > >> >> >> >> >> But it doesn't work. > >> >> >> >> >> > >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be > Bio::Seq > >> >> >> objects? > >> >> >> >> >> > >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is > not > >> my > >> >> >> >> problem. > >> >> >> >> >> > >> >> >> >> >> > --Russell > >> >> >> >> >> > > >> >> >> >> >> >> -----Original Message----- > >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl- > >> l- > >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > >> >> option > >> >> >> from > >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> Hi, > >> >> >> >> >> >> > >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to > run > >> the > >> >> >> >> following > >> >> >> >> >> >> command. > >> >> >> >> >> >> > >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> I tried the following code, which works like without the > '- > >> >> task > >> >> >> >> >> >> blastn' option. Would you please let me know how to > supply > >> the > >> >> >> >> option > >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- > >new(); > >> >> >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> >> >> ? ); > >> >> >> >> >> >> ? $factory->cleanup; > >> >> >> >> >> >> > >> >> >> >> >> >> Thank you for you help! > >> >> >> >> >> >> > >> >> >> >> >> >> -- > >> >> >> >> >> >> Regards, > >> >> >> >> >> >> Peng > >> >> >> >> >> >> _______________________________________________ > >> >> >> >> >> >> Bioperl-l mailing list > >> >> >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > Attention: The information contained in this message > and/or > >> >> >> >> attachments > >> >> >> >> >> > from AgResearch Limited is intended only for the persons > or > >> >> >> entities > >> >> >> >> >> > to which it is addressed and may contain confidential > and/or > >> >> >> >> privileged > >> >> >> >> >> > material. Any review, retransmission, dissemination or > other > >> >> use > >> >> >> of, > >> >> >> >> or > >> >> >> >> >> > taking of any action in reliance upon, this information > by > >> >> persons > >> >> >> or > >> >> >> >> >> > entities other than the intended recipients is prohibited > by > >> >> >> >> AgResearch > >> >> >> >> >> > Limited. If you have received this message in error, > please > >> >> notify > >> >> >> >> the > >> >> >> >> >> > sender immediately. > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> -- > >> >> >> >> >> Regards, > >> >> >> >> >> Peng > >> >> >> >> > > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From armendarez77 at hotmail.com Wed Jun 9 08:38:24 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Wed, 9 Jun 2010 05:38:24 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? Thanks again, Veronica Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 From: David.Messina at sbc.su.se Date: Mon, 7 Jun 2010 22:38:48 +0200 CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org To: armendarez77 at hotmail.com On Jun 7, 2010, at 10:32 PM, wrote:Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From cjfields at illinois.edu Wed Jun 9 08:44:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 07:44:54 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: <7A526D4B-AED6-4957-B2F3-CA22D5578BAB@illinois.edu> I'm thinking of releasing it separately as a focused package (wrappers, parsers and all). That way it's not reliant on releases of BioPerl for updates. chris On Jun 9, 2010, at 7:38 AM, wrote: > Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. > > When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? > > Thanks again, > > Veronica > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: David.Messina at sbc.su.se > Date: Mon, 7 Jun 2010 22:38:48 +0200 > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > To: armendarez77 at hotmail.com > > > On Jun 7, 2010, at 10:32 PM, wrote: > > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? > > No, it should be git://github.com/bioperl/bioperl-dev.git > > On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. > > Dave > > > Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. Learn more. From pengyu.ut at gmail.com Wed Jun 9 10:51:31 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 9 Jun 2010 09:51:31 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: My original code use -method=>'blastn' as Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent to blast+'s command line option -task blastn. On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell wrote: > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 4:10 p.m. >> To: Smithies, Russell >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> I think it is better to document the mapping between blast options and >> bioperl options. I searched 'task', but I don't find anything. Thank >> you for letting me know. >> >> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >> wrote: >> > Bioperl's equivalent is blastn -task blastn -query first.fa -subject >> second.fa >> > We've just used 'method' instead of 'task'. >> > >> > You can always use the legacy_blast.pl script that comes with blast+ >> then you can just use your old bl2seq commands. >> > >> > --Russell >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 4:03 p.m. >> >> To: Smithies, Russell >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> I've solved my problem by using the wrapper. Note that this is a hack >> >> as it is not done in bioperl. >> >> $ cat `which blastn` >> >> #!/usr/bin/env bash >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> Anyway, I restate my original problem below. >> >> >> >> bioperl's bl2seq by default is equivalent to the following command. >> >> blastn -query first.fa -subject second.fa >> >> >> >> I want to add the option '-task blastn'. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> But I don't find such option in bioperl's bl2seq. >> >> >> >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >> >> wrote: >> >> > I've lost track of what your main problem is, please restate your >> >> original question? >> >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >> what >> >> part of the documentation is incorrect? >> >> > >> >> > >> >> > --Russell >> >> > >> >> > >> >> >> -----Original Message----- >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. >> >> >> To: Smithies, Russell >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> >> from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> I knew this I should use blastn as bl2seq command is not available >> in >> >> >> BLAST+. I'm not sure what you think I should read? >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >> >> >> wrote: >> >> >> > I really think you need to spend more time reading and less time >> >> >> emailing. >> >> >> > >> >> >> > >> >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >> >> >> > The BLAST+ package includes the ability to compare two or more >> >> sequences >> >> >> to each other in each of the search programs. Using the -subject >> >> ?option >> >> >> instead of the -db will cause any of the search programs to behave >> as a >> >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >> >> >> sequences utility (bl2seq) included in the traditional BLAST >> package. >> >> >> > >> >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >> a >> >> >> wrapper as there's no longer a bl2seq executable as there was with >> the >> >> >> older version of BLAST. >> >> >> > >> >> >> > >> >> >> > --Russell >> >> >> > >> >> >> >> -----Original Message----- >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. >> >> >> >> To: Smithies, Russell >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> option >> >> >> from >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result >> changes, >> >> >> >> which means bioperl call blastn rather than bl2seq in the command >> >> >> >> line. The results are consistent between bioperl and blastn >> command >> >> >> >> line. >> >> >> >> >> >> >> >> $ cat `which blastn` >> >> >> >> #!/usr/bin/env bash >> >> >> >> >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >> >> >> >> wrote: >> >> >> >> > Without digging thru the code, I think the developer can call >> the >> >> >> >> parameters whatever he likes and if he wants to use "-method " >> >> instead >> >> >> of >> >> >> >> "-task " there's probably a good reason (right MAJ?) >> >> >> >> > >> >> >> >> > If you write code as in the docs, does it give you the same >> >> results >> >> >> as >> >> >> >> when you run bl2seq manually from the command line? >> >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give >> you >> >> a >> >> >> >> different result to " -method => 'megablast' " or " -method => >> 'dc- >> >> >> >> megablast' " >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > --Russell >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> >> -----Original Message----- >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> >> option >> >> >> >> from >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> See the help page of blastn. By default blastn use the option >> "- >> >> task >> >> >> >> >> megablast", which is less sensitive than the option "-task >> >> blastn". >> >> >> >> >> >> >> >> >> >> $ blastn -help >> >> >> >> >> .... >> >> >> >> >> ?-task > 'dc- >> >> >> >> megablast' >> >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> >> >> >> >> ? ? ?Task to execute >> >> >> >> >> ? ? ?Default = `megablast' >> >> >> >> >> ... >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> >> >> >> >> wrote: >> >> >> >> >> > Why are you trying to supply option '-task blastn' ?? >> >> >> >> >> > I think the docs make it fairly clear that this is not one >> of >> >> the >> >> >> >> >> available parameters. >> >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) >> is >> >> >> the >> >> >> >> one >> >> >> >> >> to use. >> >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> >> >> >> >> > >> >> >> >> >> > # create a factory: >> >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> >> >> > >> >> >> >> >> > # do a bl2seq >> >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', >> >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> >> >> >> >> > >> >> >> >> >> > Unless I've missed something and >> >> >> Bio::Tools::Run::StandAloneBlastPlus >> >> >> >> is >> >> >> >> >> completely broken (which is possible as it's development code) >> >> >> >> something >> >> >> >> >> similar to the example should work. >> >> >> >> >> > >> >> >> >> >> > --Russell >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task >> blastn >> >> >> option >> >> >> >> >> from >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> >> >> >> >> wrote: >> >> >> >> >> >> > Have you read the docs? >> >> >> >> >> >> > >> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> >> >> >> >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' >> to >> >> >> >> blastn. >> >> >> >> >> I >> >> >> >> >> >> tried >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> >> >> >> >> task='blastn'); >> >> >> >> >> >> >> >> >> >> >> >> But it doesn't work. >> >> >> >> >> >> >> >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be >> Bio::Seq >> >> >> >> objects? >> >> >> >> >> >> >> >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is >> not >> >> my >> >> >> >> >> problem. >> >> >> >> >> >> >> >> >> >> >> >> > --Russell >> >> >> >> >> >> > >> >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org >> [mailto:bioperl- >> >> l- >> >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn >> >> >> option >> >> >> >> from >> >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> Hi, >> >> >> >> >> >> >> >> >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to >> run >> >> the >> >> >> >> >> following >> >> >> >> >> >> >> command. >> >> >> >> >> >> >> >> >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the >> '- >> >> >> task >> >> >> >> >> >> >> blastn' option. Would you please let me know how to >> supply >> >> the >> >> >> >> >> option >> >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >> >new(); >> >> >> >> >> >> >> ? my $result=$factory->bl2seq( >> >> >> >> >> >> >> ? ? -method=>'blastn', >> >> >> >> >> >> >> ? ? -query=> $seq1, >> >> >> >> >> >> >> ? ? -subject=> $seq2 >> >> >> >> >> >> >> ? ); >> >> >> >> >> >> >> ? $factory->cleanup; >> >> >> >> >> >> >> >> >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> >> Regards, >> >> >> >> >> >> >> Peng >> >> >> >> >> >> >> _______________________________________________ >> >> >> >> >> >> >> Bioperl-l mailing list >> >> >> >> >> >> >> Bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > Attention: The information contained in this message >> and/or >> >> >> >> >> attachments >> >> >> >> >> >> > from AgResearch Limited is intended only for the persons >> or >> >> >> >> entities >> >> >> >> >> >> > to which it is addressed and may contain confidential >> and/or >> >> >> >> >> privileged >> >> >> >> >> >> > material. Any review, retransmission, dissemination or >> other >> >> >> use >> >> >> >> of, >> >> >> >> >> or >> >> >> >> >> >> > taking of any action in reliance upon, this information >> by >> >> >> persons >> >> >> >> or >> >> >> >> >> >> > entities other than the intended recipients is prohibited >> by >> >> >> >> >> AgResearch >> >> >> >> >> >> > Limited. If you have received this message in error, >> please >> >> >> notify >> >> >> >> >> the >> >> >> >> >> >> > sender immediately. >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> Regards, >> >> >> >> >> >> Peng >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> Regards, >> >> >> >> >> Peng >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> Regards, >> >> >> >> Peng >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Regards, Peng From cjfields at illinois.edu Wed Jun 9 10:57:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 09:57:17 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: <1BE50888-A4BE-4DCB-AC53-6C6BC5529EF0@illinois.edu> Peng, If you think this is a bug, can you submit it to bugzilla? It's very possible it's implemented but I'm not completely familiar with the code yet (though I will be very soon!). Mark could also probably answer most of these questions but I think he's been pretty busy as of late, but I can probably take a look. chris On Jun 9, 2010, at 9:51 AM, Peng Yu wrote: > My original code use -method=>'blastn' as > Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent > to blast+'s command line option -task blastn. > > > On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell > wrote: >> >> >>> -----Original Message----- >>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>> Sent: Wednesday, 9 June 2010 4:10 p.m. >>> To: Smithies, Russell >>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >>> Bio::Tools::Run::StandAloneBlastPlus? >>> >>> I think it is better to document the mapping between blast options and >>> bioperl options. I searched 'task', but I don't find anything. Thank >>> you for letting me know. >>> >>> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >>> wrote: >>>> Bioperl's equivalent is blastn -task blastn -query first.fa -subject >>> second.fa >>>> We've just used 'method' instead of 'task'. >>>> >>>> You can always use the legacy_blast.pl script that comes with blast+ >>> then you can just use your old bl2seq commands. >>>> >>>> --Russell >>>> >>>>> -----Original Message----- >>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>> Sent: Wednesday, 9 June 2010 4:03 p.m. >>>>> To: Smithies, Russell >>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>> from >>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>> >>>>> I've solved my problem by using the wrapper. Note that this is a hack >>>>> as it is not done in bioperl. >>>>> $ cat `which blastn` >>>>> #!/usr/bin/env bash >>>>> >>>>> /myinstallation/blastn -task blastn $@ >>>>> >>>>> >>>>> Anyway, I restate my original problem below. >>>>> >>>>> bioperl's bl2seq by default is equivalent to the following command. >>>>> blastn -query first.fa -subject second.fa >>>>> >>>>> I want to add the option '-task blastn'. >>>>> blastn -task blastn -query first.fa -subject second.fa >>>>> >>>>> But I don't find such option in bioperl's bl2seq. >>>>> >>>>> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >>>>> wrote: >>>>>> I've lost track of what your main problem is, please restate your >>>>> original question? >>>>>> I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >>> what >>>>> part of the documentation is incorrect? >>>>>> >>>>>> >>>>>> --Russell >>>>>> >>>>>> >>>>>>> -----Original Message----- >>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>> Sent: Wednesday, 9 June 2010 3:53 p.m. >>>>>>> To: Smithies, Russell >>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>>>> from >>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>> >>>>>>> I knew this I should use blastn as bl2seq command is not available >>> in >>>>>>> BLAST+. I'm not sure what you think I should read? >>>>>>> >>>>>>> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >>>>>>> wrote: >>>>>>>> I really think you need to spend more time reading and less time >>>>>>> emailing. >>>>>>>> >>>>>>>> >>>>> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >>>>>>>> The BLAST+ package includes the ability to compare two or more >>>>> sequences >>>>>>> to each other in each of the search programs. Using the -subject >>>>> option >>>>>>> instead of the -db will cause any of the search programs to behave >>> as a >>>>>>> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >>>>>>> sequences utility (bl2seq) included in the traditional BLAST >>> package. >>>>>>>> >>>>>>>> While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >>> a >>>>>>> wrapper as there's no longer a bl2seq executable as there was with >>> the >>>>>>> older version of BLAST. >>>>>>>> >>>>>>>> >>>>>>>> --Russell >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>> Sent: Wednesday, 9 June 2010 3:37 p.m. >>>>>>>>> To: Smithies, Russell >>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>> option >>>>>>> from >>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>> >>>>>>>>> I made a wrapper. Then I call bl2seq in bioperl. The result >>> changes, >>>>>>>>> which means bioperl call blastn rather than bl2seq in the command >>>>>>>>> line. The results are consistent between bioperl and blastn >>> command >>>>>>>>> line. >>>>>>>>> >>>>>>>>> $ cat `which blastn` >>>>>>>>> #!/usr/bin/env bash >>>>>>>>> >>>>>>>>> /myinstallation/blastn -task blastn $@ >>>>>>>>> >>>>>>>>> >>>>>>>>> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >>>>>>>>> wrote: >>>>>>>>>> Without digging thru the code, I think the developer can call >>> the >>>>>>>>> parameters whatever he likes and if he wants to use "-method " >>>>> instead >>>>>>> of >>>>>>>>> "-task " there's probably a good reason (right MAJ?) >>>>>>>>>> >>>>>>>>>> If you write code as in the docs, does it give you the same >>>>> results >>>>>>> as >>>>>>>>> when you run bl2seq manually from the command line? >>>>>>>>>> When you run it via BioPerl, does " -method => 'blastn' " give >>> you >>>>> a >>>>>>>>> different result to " -method => 'megablast' " or " -method => >>> 'dc- >>>>>>>>> megablast' " >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> --Russell >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> -----Original Message----- >>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>> Sent: Wednesday, 9 June 2010 3:12 p.m. >>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>>>> option >>>>>>>>> from >>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>> >>>>>>>>>>> See the help page of blastn. By default blastn use the option >>> "- >>>>> task >>>>>>>>>>> megablast", which is less sensitive than the option "-task >>>>> blastn". >>>>>>>>>>> >>>>>>>>>>> $ blastn -help >>>>>>>>>>> .... >>>>>>>>>>> -task >> 'dc- >>>>>>>>> megablast' >>>>>>>>>>> 'megablast' 'vecscreen' > >>>>>>>>>>> Task to execute >>>>>>>>>>> Default = `megablast' >>>>>>>>>>> ... >>>>>>>>>>> >>>>>>>>>>> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >>>>>>>>>>> wrote: >>>>>>>>>>>> Why are you trying to supply option '-task blastn' ?? >>>>>>>>>>>> I think the docs make it fairly clear that this is not one >>> of >>>>> the >>>>>>>>>>> available parameters. >>>>>>>>>>>> The option " -method => 'blastn' " (as detailed in the docs) >>> is >>>>>>> the >>>>>>>>> one >>>>>>>>>>> to use. >>>>>>>>>>>> http://doc.bioperl.org/releases/bioperl-current/bioperl- >>>>>>>>>>> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >>>>>>>>>>>> >>>>>>>>>>>> # create a factory: >>>>>>>>>>>> $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >>>>>>>>>>>> >>>>>>>>>>>> # do a bl2seq >>>>>>>>>>>> $fac->bl2seq( -method => 'blastn', >>>>>>>>>>>> -query => $seq_object_1, >>>>>>>>>>>> -subject => $seq_object_2 ); >>>>>>>>>>>> >>>>>>>>>>>> Unless I've missed something and >>>>>>> Bio::Tools::Run::StandAloneBlastPlus >>>>>>>>> is >>>>>>>>>>> completely broken (which is possible as it's development code) >>>>>>>>> something >>>>>>>>>>> similar to the example should work. >>>>>>>>>>>> >>>>>>>>>>>> --Russell >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 2:21 p.m. >>>>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task >>> blastn >>>>>>> option >>>>>>>>>>> from >>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>> >>>>>>>>>>>>> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >>>>>>>>>>>>> wrote: >>>>>>>>>>>>>> Have you read the docs? >>>>>>>>>>>>>> >>> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >>>>>>>>>>>>> >>>>>>>>>>>>> Yes. But they don't say how to supply option '-task blastn' >>> to >>>>>>>>> blastn. >>>>>>>>>>> I >>>>>>>>>>>>> tried >>>>>>>>>>>>> >>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >>>>>>>>>>> task='blastn'); >>>>>>>>>>>>> >>>>>>>>>>>>> But it doesn't work. >>>>>>>>>>>>> >>>>>>>>>>>>>> Do query and subject ($seq1 and $seq2) need to be >>> Bio::Seq >>>>>>>>> objects? >>>>>>>>>>>>> >>>>>>>>>>>>> I think so. I just get $seq1 and $seq2 from SeqIO. This is >>> not >>>>> my >>>>>>>>>>> problem. >>>>>>>>>>>>> >>>>>>>>>>>>>> --Russell >>>>>>>>>>>>>> >>>>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>>>> From: bioperl-l-bounces at lists.open-bio.org >>> [mailto:bioperl- >>>>> l- >>>>>>>>>>>>>>> bounces at lists.open-bio.org] On Behalf Of Peng Yu >>>>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 1:00 p.m. >>>>>>>>>>>>>>> To: bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> Subject: [Bioperl-l] How to run blastn with -task blastn >>>>>>> option >>>>>>>>> from >>>>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I need to use Bio::Tools::Run::StandAloneBlastPlus to >>> run >>>>> the >>>>>>>>>>> following >>>>>>>>>>>>>>> command. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> blastn -task blastn -query first.fa -subject second.fa >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I tried the following code, which works like without the >>> '- >>>>>>> task >>>>>>>>>>>>>>> blastn' option. Would you please let me know how to >>> supply >>>>> the >>>>>>>>>>> option >>>>>>>>>>>>>>> in Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >>>> new(); >>>>>>>>>>>>>>> my $result=$factory->bl2seq( >>>>>>>>>>>>>>> -method=>'blastn', >>>>>>>>>>>>>>> -query=> $seq1, >>>>>>>>>>>>>>> -subject=> $seq2 >>>>>>>>>>>>>>> ); >>>>>>>>>>>>>>> $factory->cleanup; >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Thank you for you help! >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> -- >>>>>>>>>>>>>>> Regards, >>>>>>>>>>>>>>> Peng >>>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>>> Bioperl-l mailing list >>>>>>>>>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> Attention: The information contained in this message >>> and/or >>>>>>>>>>> attachments >>>>>>>>>>>>>> from AgResearch Limited is intended only for the persons >>> or >>>>>>>>> entities >>>>>>>>>>>>>> to which it is addressed and may contain confidential >>> and/or >>>>>>>>>>> privileged >>>>>>>>>>>>>> material. Any review, retransmission, dissemination or >>> other >>>>>>> use >>>>>>>>> of, >>>>>>>>>>> or >>>>>>>>>>>>>> taking of any action in reliance upon, this information >>> by >>>>>>> persons >>>>>>>>> or >>>>>>>>>>>>>> entities other than the intended recipients is prohibited >>> by >>>>>>>>>>> AgResearch >>>>>>>>>>>>>> Limited. If you have received this message in error, >>> please >>>>>>> notify >>>>>>>>>>> the >>>>>>>>>>>>>> sender immediately. >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> -- >>>>>>>>>>>>> Regards, >>>>>>>>>>>>> Peng >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Regards, >>>>>>>>>>> Peng >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Regards, >>>>>>>>> Peng >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Regards, >>>>>>> Peng >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Regards, >>>>> Peng >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From amackey at virginia.edu Wed Jun 9 10:50:48 2010 From: amackey at virginia.edu (Aaron Mackey) Date: Wed, 9 Jun 2010 10:50:48 -0400 Subject: [Bioperl-l] patch: fix parsing of FASTA results Message-ID: Hopefully someone a bit more git-savvy than me can drop this little ditty in to Bio/SearchIO/fasta.pm? [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 @@ -623,7 +623,7 @@ $_ = $self->_readline(); my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* (?: bits: \s* (\S+) \s+ )? - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; + (?: E|expect ) \s* \((?:\d+)?\) :? \s*(\S+)/ox; $bits = $score unless defined $bits; my $v = shift @hit_signifs; From golharam at gmail.com Wed Jun 9 11:59:01 2010 From: golharam at gmail.com (Ryan) Date: Wed, 9 Jun 2010 08:59:01 -0700 (PDT) Subject: [Bioperl-l] How to determine match type from Bio::Coordinate::GeneMapper Message-ID: <8838cc42-fc66-4b46-bf46-43053333e664@x27g2000yqb.googlegroups.com> Hi - I'm using Bio::Coordinate::GeneMapper to map from CDS to Gene Coordinates. I'm using the example given in the code: # Collection representing exons # cds 1 5 6 10 11 15 # exon 1 5 1 5 1 5 # gene 1 5 11 15 21 25 # |---| |---| |---| #-----|-----------------------|---|-- # chr 1 5 9 15 19 25 29 # pair1 pair2 pair3 If I map cds(1-5) -> gene(1-5), the first 5 bases of the cds map to the first 5 bases of the gene, as expected. my $cds_pos = Bio::Location::Simple->new(-start => 1, -end => 5, - strand => 1); my $gen_pos = $m->map($cds_pos); is ($gen_pos->start, 1); is ($gen_pos->end, 5); If I map cds(6-11) -> gene(11-21), I get 2 sublocations $cds_pos = Bio::Location::Simple->new(-start => 6, -end => 11, -strand => 1); my $gen_pos_split = $m->map($cds_pos); is ($gen_pos_split->start, 11); is ($gen_pos_split->end, 21); My question is, how do I determine, after mapping, that my result is in ONE consecutive location, or in multiple locations? I can't figure this out from the documentation on Bio::Coordinate::GeneMapper or Bio::Coordinate::Result. From jessica.sun at gmail.com Wed Jun 9 12:28:58 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:28:58 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 12:46:51 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 18:46:51 +0200 Subject: [Bioperl-l] patch: fix parsing of FASTA results In-Reply-To: References: Message-ID: Committed. Tests pass. Thanks, Aaron! Dave On Jun 9, 2010, at 4:50 PM, Aaron Mackey wrote: > Hopefully someone a bit more git-savvy than me can drop this little ditty in > to Bio/SearchIO/fasta.pm? > > [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm > --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 > +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 > @@ -623,7 +623,7 @@ > $_ = $self->_readline(); > my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* > (?: bits: \s* (\S+) \s+ )? > - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; > + (?: E|expect ) \s* \((?:\d+)?\) :? > \s*(\S+)/ox; > $bits = $score unless defined $bits; > > my $v = shift @hit_signifs; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Wed Jun 9 12:30:35 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:30:35 -0400 Subject: [Bioperl-l] Fwd: Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: ---------- Forwarded message ---------- From: Jessica Sun Date: Wed, Jun 9, 2010 at 12:28 PM Subject: Re: [Bioperl-l] Get variation included in genbank file To: Dave Messina Cc: bioperl-l at lists.open-bio.org I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 13:20:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:20:12 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: Hi again Jessica, Forgive my slowness here, but is this what you want to do? 1) Start with an NM_ mRNA record in your example, NM_001110556.1 2) Obtain the corresponding NG_ genomics locus record in Genbank format which would correspond to the example file you attached. Accession number NG_011506 Is that right? There are probably more clever ways to do this, but here's how I would approach it: 1) extract the GeneID dbxref from the NM_ mRNA record using Bio::SeqIO. See http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Features for details. 2) Use that to query the Gene database and get the related NG_ record I don't know exactly what the field name is for the NG_ record, but you can list them all using this example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#What_information_is_available_for_database_.27x.27.3F and figure it out via trial and error. 3) Once you have the NG_ id, you can retrieve the genbank record Here's the relevant example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#Retrieve_raw_data_records_from_GenBank.2C_save_raw_data_to_file.2C_then_parse_via_Bio::SeqIO So, by now it should be obvious that I'm presenting a general strategy. You'll have to do some legwork to get exactly what you want. Good luck, and if you come up with a nice solution, please add it to the wiki! Dave > I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. > > thx > > > On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > > > > -- > Jessica Jingping Sun > From David.Messina at sbc.su.se Wed Jun 9 13:51:25 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:51:25 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Hi Jessica, Please keep the BioPerl list on the Cc line so everyone can follow along. > Follow your approach it did not seem to me you can have Variation tag included which > list the know dbSNP location, id and allele changes? Ah okay, I assumed the file you attached was obtained directly from Genbank and that the variation info therein was already included. (It appears that's not the case ? the variation information is not present in the version of NG_011506 I found at Genbank.) If you want to include your own custom information in a genbank file, you'll have to pull it out of dbSNP (or wherever the variation info is). There are a couple of scripts that might be able to help with that (search for snp): http://www.bioperl.org/wiki/Bioperl_scripts You can then insert them into a RichSeq object as features and output in genbank format. For that part, see the HOWTO: http://www.bioperl.org/wiki/HOWTO:Feature-Annotation Dave From jessica.sun at gmail.com Wed Jun 9 14:37:46 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 14:37:46 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: Thanks Dave. the variation information is not present in the version of NG_011506 I found at Genbank.) -- Yes, then if you click on the right side customer view there is a check box Features added by NCBI :209 snps, if you check that it will add all the variations in the gbk fomat. I found this would be a neat feature if it can automatically load by bioperl with an option turn on. On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > Hi Jessica, > > Please keep the BioPerl list on the Cc line so everyone can follow along. > > > > Follow your approach it did not seem to me you can have Variation tag > included which > > list the know dbSNP location, id and allele changes? > > Ah okay, I assumed the file you attached was obtained directly from Genbank > and that the variation info therein was already included. (It appears that's > not the case ? the variation information is not present in the version of > NG_011506 I found at Genbank.) > > If you want to include your own custom information in a genbank file, > you'll have to pull it out of dbSNP (or wherever the variation info is). > There are a couple of scripts that might be able to help with that (search > for snp): > > http://www.bioperl.org/wiki/Bioperl_scripts > > > You can then insert them into a RichSeq object as features and output in > genbank format. For that part, see the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > > > Dave > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Wed Jun 9 15:08:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 21:08:50 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <088E96F2-E26D-4142-AEB8-A8EFD26DEE68@sbc.su.se> > I found this would be a neat feature if it can automatically load by bioperl with an option turn on. Enhancements of that sort are normally contributed by BioPerl users who have a desire for them. (hint hint :) While I can't promise anything, of course, feel free to submit an enhancement request to our bug tracker: http://bugzilla.open-bio.org/ Dave From cjfields at illinois.edu Wed Jun 9 20:06:42 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 19:06:42 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. #!/usr/bin/perl -w use Modern::Perl; use Bio::DB::EUtilities; my $id = '224809339'; my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', -id => $id, -email => 'setyourown at foo.bar', -verbose => 1, -dbfrom => 'nuccore', -db => 'snp', -cmd => 'neighbor_history', ); my $hist = $eutil->next_History || die "No history data returned"; $eutil->set_parameters(-eutil => 'efetch', -history => $hist, -retmode => 'text', # 'chr', 'flt', 'brief', 'rsr', 'docset' -rettype => 'chr' ); $eutil->get_Response(-file => 'snps.txt'); # or ... $eutil->set_parameters(-eutil => 'esummary', -history => $hist, ); $eutil->print_all; # chris On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > Thanks Dave. > the variation information is not present in the version of NG_011506 I found > at Genbank.) -- Yes, then if you click on the right side customer view there > is a check box Features added by NCBI :209 snps, if you check that it will > add all the variations in the gbk fomat. I found this would be a neat > feature if it can automatically load by bioperl with an option turn on. > > > > On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > >> Hi Jessica, >> >> Please keep the BioPerl list on the Cc line so everyone can follow along. >> >> >>> Follow your approach it did not seem to me you can have Variation tag >> included which >>> list the know dbSNP location, id and allele changes? >> >> Ah okay, I assumed the file you attached was obtained directly from Genbank >> and that the variation info therein was already included. (It appears that's >> not the case ? the variation information is not present in the version of >> NG_011506 I found at Genbank.) >> >> If you want to include your own custom information in a genbank file, >> you'll have to pull it out of dbSNP (or wherever the variation info is). >> There are a couple of scripts that might be able to help with that (search >> for snp): >> >> http://www.bioperl.org/wiki/Bioperl_scripts >> >> >> You can then insert them into a RichSeq object as features and output in >> genbank format. For that part, see the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >> >> >> Dave >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From bimber at wisc.edu Thu Jun 10 09:43:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 08:43:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix Message-ID: hello, a little while ago i posted a bug about commandexts when you pass an array ref. when you pass an arrayref of files, instead of a string with 1 file, you get an error saying 'cannot use string '......' as an array ref while strict refs in place'. i believe i understand the bug, but am not entirely sure the best way to fix it. here's the original code from commandexts.pm, starting line 989: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@files, $_, 1, @{$files[$_]}); splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); } } It throws the error on the second splice(). The reason is b/c $files[$_] isnt an array ref anymore, b/c we just expanded it in the line before. Truthfully, I dont entirely understand why we're expanding out @switches for each file. Maybe i'm missing something obvious, but why would we want these copied? however, there's couple ways around it: 1. save the value of @{$files[$_]} by adding: my @tmp = @{$files[$_]};, then using @tmp on that line 2. put the second splice() before the first 3. if the idea is actually to expand @switches against every file, then move this outside the for loop I originally posted that this could be fixed by surrounding the problem line with 'no strict'/ 'use strict'; however, that really only worked b/c the command I was using did not actually have any switches. I doubt it would work properly if your command had them. -Ben From cjfields at illinois.edu Thu Jun 10 10:58:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 09:58:56 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: Message-ID: On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > hello, > > a little while ago i posted a bug about commandexts when you pass an > array ref. when you pass an arrayref of files, instead of a string > with 1 file, you get an error saying 'cannot use string '......' as an > array ref while strict refs in place'. i believe i understand the > bug, but am not entirely sure the best way to fix it. here's the > original code from commandexts.pm, starting line 989: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@files, $_, 1, @{$files[$_]}); > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > } > } > > It throws the error on the second splice(). The reason is b/c > $files[$_] isnt an array ref anymore, b/c we just expanded it in the > line before. Truthfully, I dont entirely understand why we're > expanding out @switches for each file. Maybe i'm missing something > obvious, but why would we want these copied? Maybe @file and @switches are in-sync and thus need similar expansion? Not sure, personally. > however, there's couple ways around it: > > 1. save the value of @{$files[$_]} by adding: my @tmp = > @{$files[$_]};, then using @tmp on that line > 2. put the second splice() before the first > 3. if the idea is actually to expand @switches against every file, > then move this outside the for loop The first one seems safest. The real question is, do any of these solutions work? Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > I originally posted that this could be fixed by surrounding the > problem line with 'no strict'/ 'use strict'; however, that really only > worked b/c the command I was using did not actually have any switches. > I doubt it would work properly if your command had them. > > -Ben I think, if one of the proposed solutions works, pick which you think is the best and go with it. Test it out, then we can commit this to github. BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. chris From armendarez77 at hotmail.com Thu Jun 10 10:54:18 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 07:54:18 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID Message-ID: Hello, Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a 'Bad Gateway' error. While my system admin is looking into this, I've decided to go another route. Therefore, I've downloaded the NCBI nr database. The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. Thank you, Veronica _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From gopal.cshl at gmail.com Thu Jun 10 12:24:31 2010 From: gopal.cshl at gmail.com (Gopal) Date: Thu, 10 Jun 2010 12:24:31 -0400 Subject: [Bioperl-l] recursion limit reached for a gbk file Message-ID: Hi, I get a error message "Complex regular subexpression recursion limit (32766) exceeded " when I try to parse CDS from a microbial genbank file. Apparently recursion limit is universal and that means, others have somehow overcome this problem. The subroutine that triggers this error is pasted below: (based on "Beginning perl for Bioinformatics" as I am trying to adapt an example in that book for my work) $fh = open_file($library); $offset = tell($fh); while( $record = get_next_record($fh) ) { my $locus=( ); ($annotation, $dna) = get_annotation_and_dna($record); $offset = tell($fh); # Extract the fields of the annotation %fields = parse_annotation($annotation); Sub-routine that triggers the error message: sub parse_annotation { my($annotation) = @_; my(%results) = ( ); while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { my $value = $&; (my $key = $value) =~ s/^([A-Z]+).*/$1/s; $results{$key} = $value; } return %results; } thanks, -gopal From bimber at wisc.edu Thu Jun 10 12:46:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 11:46:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: i suspect this piece of code is seldom encountered. if any existing bioperl wrapper actually tried to pass an arrayref to commandexts, it would hit this same error. i only encountered this using samtools merge. I looked a little more into exactly what @switch is doing. it seems to allow you to supply switches specific to a given file. the bowtie wrapper uses it with paired end data (the first fasta gets a -1 and and second gets a -2). however, i dont see anywhere where this actually applies in a multi-file situation. nonetheless, reversing the order of the two existing splice() (lines 991-992) I think will preserve whatever functionality was there and prevent the error: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); splice(@files, $_, 1, @{$files[$_]}); } } As I write this email and look at the code above a little more, I think that the current approach used to expand these arrayrefs will also break down in other situations, including when the arrayref is not in the last element of the @files array or when 2 arrayrefs are passed. However, it seems that this is barely used and it really depends how much time/thought you want to put into it. -Ben On Thu, Jun 10, 2010 at 9:58 AM, Chris Fields wrote: > On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > >> hello, >> >> a little while ago i posted a bug about commandexts when you pass an >> array ref. ?when you pass an arrayref of files, instead of a string >> with 1 file, you get an error saying 'cannot use string '......' as an >> array ref while strict refs in place'. ?i believe i understand the >> bug, but am not entirely sure the best way to fix it. ?here's the >> original code from commandexts.pm, starting line 989: >> >> ? ?my @files = @args{@specs}; >> ? ?# expand arrayrefs >> ? ?my $l = $#files; >> ? ?for (0..$l) { >> ? ? ? if (ref($files[$_]) eq 'ARRAY') { >> ? ? ? ? ? splice(@files, $_, 1, @{$files[$_]}); >> ? ? ? ? ? splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); >> ? ? ? } >> ? ?} >> >> It throws the error on the second splice(). ?The reason is b/c >> $files[$_] isnt an array ref anymore, b/c we just expanded it in the >> line before. ?Truthfully, I dont entirely understand why we're >> expanding out @switches for each file. ?Maybe i'm missing something >> obvious, but why would we want these copied? > > Maybe @file and @switches are in-sync and thus need similar expansion? ?Not sure, personally. > >> however, there's couple ways around it: >> >> 1. save the value of ?@{$files[$_]} by adding: my @tmp = >> @{$files[$_]};, then using @tmp on that line >> 2. put the second splice() before the first >> 3. if the idea is actually to expand @switches against every file, >> then move this outside the for loop > > The first one seems safest. ?The real question is, do any of these solutions work? ?Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > >> I originally posted that this could be fixed by surrounding the >> problem line with 'no strict'/ 'use strict'; however, that really only >> worked b/c the command I was using did not actually have any switches. >> I doubt it would work properly if your command had them. >> >> -Ben > > I think, if one of the proposed solutions works, pick which you think is the best and go with it. ?Test it out, then we can commit this to github. > > BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From cjfields at illinois.edu Thu Jun 10 13:04:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 12:04:08 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: <6814E5AE-D074-4199-8269-6CDB928EB9DD@illinois.edu> On Jun 10, 2010, at 11:46 AM, Ben Bimber wrote: > i suspect this piece of code is seldom encountered. if any existing > bioperl wrapper actually tried to pass an arrayref to commandexts, it > would hit this same error. i only encountered this using samtools > merge. > > I looked a little more into exactly what @switch is doing. it seems > to allow you to supply switches specific to a given file. the bowtie > wrapper uses it with paired end data (the first fasta gets a -1 and > and second gets a -2). however, i dont see anywhere where this > actually applies in a multi-file situation. nonetheless, reversing > the order of the two existing splice() (lines 991-992) I think will > preserve whatever functionality was there and prevent the error: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > splice(@files, $_, 1, @{$files[$_]}); > } > } > > As I write this email and look at the code above a little more, I > think that the current approach used to expand these arrayrefs will > also break down in other situations, including when the arrayref is > not in the last element of the @files array or when 2 arrayrefs are > passed. However, it seems that this is barely used and it really > depends how much time/thought you want to put into it. > > -Ben It's worth documenting this concern in the code as a comment, particularly if the situation does pop up at some point. Do you want to send a patch in? Or just want us to make the switch in the code directly? chris From chmille4 at gmail.com Thu Jun 10 14:53:15 2010 From: chmille4 at gmail.com (Chase Miller) Date: Thu, 10 Jun 2010 14:53:15 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. Message-ID: Hi all, First off, I hope it's ok to post job openings here. However, I couldn't think of a better place to find some high quality people . As for the postion, The Center for Infection and Immunity at Columbia University has an opening for programmer analyst. If you are interested, check out the link below for more information https://jobs.columbia.edu/applicants/jsp/shared/frameset/Frameset.jsp?time=1276195489164 Thanks, Chase Miller Programmer Analyst The Center for Infection and Immunity Columbia University From David.Messina at sbc.su.se Thu Jun 10 15:39:14 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:39:14 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: Message-ID: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Hi Gopal, This is not a BioPerl question, so this list is really not the place for it. However, here's the first Google hit on your error message, which provides a solution: http://www.perlmonks.org/?node_id=810857 The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? Dave On Jun 10, 2010, at 6:24 PM, Gopal wrote: > Hi, > > I get a error message "Complex regular subexpression recursion limit > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > Apparently recursion limit is universal and that means, > others have somehow overcome this problem. > > The subroutine that triggers this error is pasted below: > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > example in that book for my work) > > > $fh = open_file($library); > > $offset = tell($fh); > > while( $record = get_next_record($fh) ) { > > my $locus=( ); > > ($annotation, $dna) = get_annotation_and_dna($record); > > $offset = tell($fh); > > > > # Extract the fields of the annotation > %fields = parse_annotation($annotation); > > > Sub-routine that triggers the error message: > > > sub parse_annotation { > > my($annotation) = @_; > my(%results) = ( ); > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > my $value = $&; > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > $results{$key} = $value; > } > > return %results; > } > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 15:56:21 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:56:21 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Message-ID: On Jun 10, 2010, at 9:54 PM, Gopal wrote: > Hi Dave, > > thanks for the tip. I saw that and others too. > > In "Beginning Perl for Bioinformatics", such a sub routine that I posted earlier was used for parsing out features etc. of genbank file (chapter 10). > That does not work well, at least with me, when large genbank files with multiple records are used. > > Meanwhile, by avoiding the problem of regex for long strings in a while loop and by parsing information by differently by reducing the > length of the string, I have fixed the problem. The trick was to avoid the hash as that required all of the long string to be stored in $value. > > thanks anyway, > > best > > -gopal > > On Thu, Jun 10, 2010 at 3:39 PM, Dave Messina wrote: > Hi Gopal, > > This is not a BioPerl question, so this list is really not the place for it. > > However, here's the first Google hit on your error message, which provides a solution: > > http://www.perlmonks.org/?node_id=810857 > > The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. > > Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? > > > Dave > > > > On Jun 10, 2010, at 6:24 PM, Gopal wrote: > > > Hi, > > > > I get a error message "Complex regular subexpression recursion limit > > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > > Apparently recursion limit is universal and that means, > > others have somehow overcome this problem. > > > > The subroutine that triggers this error is pasted below: > > > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > > example in that book for my work) > > > > > > $fh = open_file($library); > > > > $offset = tell($fh); > > > > while( $record = get_next_record($fh) ) { > > > > my $locus=( ); > > > > ($annotation, $dna) = get_annotation_and_dna($record); > > > > $offset = tell($fh); > > > > > > > > # Extract the fields of the annotation > > %fields = parse_annotation($annotation); > > > > > > Sub-routine that triggers the error message: > > > > > > sub parse_annotation { > > > > my($annotation) = @_; > > my(%results) = ( ); > > > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > > my $value = $&; > > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > > $results{$key} = $value; > > } > > > > return %results; > > } > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > From David.Messina at sbc.su.se Thu Jun 10 16:00:49 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:00:49 +0200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: Message-ID: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Hi Veronica, These days when you run BLAST at the NCBI server, you're running BLAST+, which is their complete rewrite of (and replacement for) BLAST. You can also download BLAST+ and do pretty much everything on your local machine that you can do on their server, including limit by taxonomy. I think this is the right parameter: http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query Incidentally, BLAST+ has this awesome feature whereby you can, from the command line, run searches remotely on their server against their databases from the command line, just by adding the --remote flag. (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by the way.) Dave On Jun 10, 2010, at 4:54 PM, wrote: > > Hello, > > Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? > > I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a > 'Bad Gateway' error. While my system admin is looking into this, I've > decided to go another route. Therefore, I've downloaded the NCBI nr database. > > The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. > > When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. > > > Thank you, > > Veronica > > > > > _________________________________________________________________ > Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 16:11:27 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:11:27 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Nice, Chris! I've added it to the EUtils cookbook. Dave On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). > > After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. > > #!/usr/bin/perl -w > > use Modern::Perl; > use Bio::DB::EUtilities; > > my $id = '224809339'; > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > -id => $id, > -email => 'setyourown at foo.bar', > -verbose => 1, > -dbfrom => 'nuccore', > -db => 'snp', > -cmd => 'neighbor_history', > ); > > my $hist = $eutil->next_History || die "No history data returned"; > > $eutil->set_parameters(-eutil => 'efetch', > -history => $hist, > -retmode => 'text', > # 'chr', 'flt', 'brief', 'rsr', 'docset' > -rettype => 'chr' > ); > > $eutil->get_Response(-file => 'snps.txt'); > > # or ... > > $eutil->set_parameters(-eutil => 'esummary', > -history => $hist, > ); > > $eutil->print_all; > > # chris > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >> Thanks Dave. >> the variation information is not present in the version of NG_011506 I found >> at Genbank.) -- Yes, then if you click on the right side customer view there >> is a check box Features added by NCBI :209 snps, if you check that it will >> add all the variations in the gbk fomat. I found this would be a neat >> feature if it can automatically load by bioperl with an option turn on. >> >> >> >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: >> >>> Hi Jessica, >>> >>> Please keep the BioPerl list on the Cc line so everyone can follow along. >>> >>> >>>> Follow your approach it did not seem to me you can have Variation tag >>> included which >>>> list the know dbSNP location, id and allele changes? >>> >>> Ah okay, I assumed the file you attached was obtained directly from Genbank >>> and that the variation info therein was already included. (It appears that's >>> not the case ? the variation information is not present in the version of >>> NG_011506 I found at Genbank.) >>> >>> If you want to include your own custom information in a genbank file, >>> you'll have to pull it out of dbSNP (or wherever the variation info is). >>> There are a couple of scripts that might be able to help with that (search >>> for snp): >>> >>> http://www.bioperl.org/wiki/Bioperl_scripts >>> >>> >>> You can then insert them into a RichSeq object as features and output in >>> genbank format. For that part, see the HOWTO: >>> >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>> >>> >>> Dave >>> >>> >> >> >> -- >> Jessica Jingping Sun >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at drycafe.net Thu Jun 10 16:21:28 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Thu, 10 Jun 2010 16:21:28 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. In-Reply-To: References: Message-ID: <6390F20C-9E9A-425E-AB59-33918612B052@drycafe.net> On Jun 10, 2010, at 2:53 PM, Chase Miller wrote: > I hope it's ok to post job openings here. So long as people who program in Perl aren't disqualified from applying :-) -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From shalabh.sharma7 at gmail.com Thu Jun 10 16:40:34 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Thu, 10 Jun 2010 16:40:34 -0400 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: Hi Veronica, You can also download the refseq release catalog. ftp://ftp.ncbi.nih.gov/refseq/release/release-catalog/ It contains all the information like GI and taxaIDs. With the help of a simple script you can parse the required information. Hope this helps. Thanks Shalabh Sharma On Thu, Jun 10, 2010 at 4:00 PM, Dave Messina wrote: > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their databases > from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (-l) > that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy > Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but > not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:11:50 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:11:50 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Eutils will do it with the right query: use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'nucleotide', -term => 'txid9940[Organism:noexp]', -email => 'mymail at foo.bar', -retmax => 1000000); # query hits print "Count = ",$factory->get_count,"\n"; # UIDs my @ids = $factory->get_ids; --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, 11 June 2010 8:01 a.m. > To: armendarez77 at hotmail.com > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > ry > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their > databases from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (- > l) that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a > Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a > Tax Id, but not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > :WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Thu Jun 10 17:35:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 16:35:48 -0500 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: You can get up-to-date files mapping GI to TaxID here (nr and nt): ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ chris On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > Eutils will do it with the right query: > > > > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'nucleotide', > -term => 'txid9940[Organism:noexp]', > -email => 'mymail at foo.bar', > -retmax => 1000000); > > # query hits > print "Count = ",$factory->get_count,"\n"; > # UIDs > my @ids = $factory->get_ids; > > > --Russell > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, 11 June 2010 8:01 a.m. >> To: armendarez77 at hotmail.com >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID >> >> Hi Veronica, >> >> These days when you run BLAST at the NCBI server, you're running BLAST+, >> which is their complete rewrite of (and replacement for) BLAST. >> >> You can also download BLAST+ and do pretty much everything on your local >> machine that you can do on their server, including limit by taxonomy. >> >> I think this is the right parameter: >> >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que >> ry >> >> Incidentally, BLAST+ has this awesome feature whereby you can, from the >> command line, run searches remotely on their server against their >> databases from the command line, just by adding the --remote flag. >> >> >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by >> the way.) >> >> Dave >> >> >> >> On Jun 10, 2010, at 4:54 PM, wrote: >> >>> >>> Hello, >>> >>> Is there a BioPerl method that will give a list of GIs for a specified >> NCBI taxonomy Id? >>> >>> I've previously tried using Urlapi to BLAST primers against the nr >> database on the NCBI server, but recently I keep getting a >>> 'Bad Gateway' error. While my system admin is looking into this, I've >>> decided to go another route. Therefore, I've downloaded the NCBI nr >> database. >>> >>> The problem I've run into is restricting the BLAST against the nr >> database to a subset of sequences. The NCBI Blast tools have an option (- >> l) that does this, but it requires a list of GI's. >>> >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids >> (Entrez Query). Therefore, is there a way to get all GIs within a >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a >> Tax Id, but not the reverse. >>> >>> >>> Thank you, >>> >>> Veronica >>> >>> >>> >>> >>> _________________________________________________________________ >>> Hotmail is redefining busy with tools for the New Busy. Get more from >> your inbox. >>> >> http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON >> :WL:en-US:WM_HMP:042010_2 >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:43:55 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:43:55 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> That's the way I usually do it as NCBI/eUtils can be a bit flakey. Not BioPerls fault of course ;-) zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' --Russell > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, 11 June 2010 9:36 a.m. > To: Smithies, Russell > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > bio.org' > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > chris > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > Eutils will do it with the right query: > > > > > > > > > > use Bio::DB::EUtilities; > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > -db => 'nucleotide', > > -term => 'txid9940[Organism:noexp]', > > -email => 'mymail at foo.bar', > > -retmax => 1000000); > > > > # query hits > > print "Count = ",$factory->get_count,"\n"; > > # UIDs > > my @ids = $factory->get_ids; > > > > > > --Russell > > > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > >> Sent: Friday, 11 June 2010 8:01 a.m. > >> To: armendarez77 at hotmail.com > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > >> > >> Hi Veronica, > >> > >> These days when you run BLAST at the NCBI server, you're running > BLAST+, > >> which is their complete rewrite of (and replacement for) BLAST. > >> > >> You can also download BLAST+ and do pretty much everything on your > local > >> machine that you can do on their server, including limit by taxonomy. > >> > >> I think this is the right parameter: > >> > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > >> ry > >> > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > >> command line, run searches remotely on their server against their > >> databases from the command line, just by adding the --remote flag. > >> > >> > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > by > >> the way.) > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 4:54 PM, wrote: > >> > >>> > >>> Hello, > >>> > >>> Is there a BioPerl method that will give a list of GIs for a specified > >> NCBI taxonomy Id? > >>> > >>> I've previously tried using Urlapi to BLAST primers against the nr > >> database on the NCBI server, but recently I keep getting a > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > >> database. > >>> > >>> The problem I've run into is restricting the BLAST against the nr > >> database to a subset of sequences. The NCBI Blast tools have an option > (- > >> l) that does this, but it requires a list of GI's. > >>> > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > >> (Entrez Query). Therefore, is there a way to get all GIs within a > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > a > >> Tax Id, but not the reverse. > >>> > >>> > >>> Thank you, > >>> > >>> Veronica > >>> > >>> > >>> > >>> > >>> _________________________________________________________________ > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > >> your inbox. > >>> > >> > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > >> :WL:en-US:WM_HMP:042010_2 > >>> _______________________________________________ > >>> Bioperl-l mailing list > >>> Bioperl-l at lists.open-bio.org > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Thu Jun 10 21:05:29 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 10 Jun 2010 20:05:29 -0500 Subject: [Bioperl-l] Regulars on IRC - GMT offsets, locations Message-ID: <69077B6F-6C31-4094-AEA8-1446C8DCABBF@jays.net> I added GMT offsets and locations. I didn't have all the info, so I made some of them up. For your correction: http://bioperl.org/wiki/IRC#Regulars_on_IRC ptl is my favorite fake location. :) Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Thu Jun 10 23:27:11 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Thu, 10 Jun 2010 22:27:11 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed Message-ID: Hi, I'm trying to get the pubmed ids from the following link. I use the code pasted at the end of the mail (the output is pasted as well). Note that more ids than necessary are returned. Then I try to use the option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let me know how to get the correct download of the ids in the following page by bioperl EUtilities? http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 -- Regards, Peng $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n"; print $factory->get_Response->content; $ ./main.pl 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 gene 6476 pubmed gene_pubmed 19416921 19121318 17194452 16802690 16543230 16344560 16329100 15944403 15522234 14724820 12477932 11340066 11329013 11003604 10903344 9092938 8609217 8521865 7566098 3925457 3896809 3178143 2962903 1717481 1677636 1560017 1353958 pubmed gene_pubmed_citedinomim 16329100 14724820 14276572 11340066 10903344 8648532 8648527 8609217 8576798 8118103 7371476 6357634 6082247 5848222 5436545 5333958 5075694 5041318 5015965 4952790 4742566 4579420 4164045 3925457 3807985 3553946 3403721 3178143 2962903 1717481 1560017 1353958 1256470 pubmed gene_pubmed_rif 19121318 17194452 16802690 16543230 16329100 15944403 15522234 8521865 From cjfields at illinois.edu Thu Jun 10 23:48:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 22:48:37 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <4DD0E356-4218-4808-B5E5-76D6851DAE82@illinois.edu> Limit the IDs down to a specific dbfrom-db link using -linkname, otherwise it assumes all links and just gloms everything together (yes, pretty helpful of them). Here's the link for those: http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/entrezlinks.html Make sure to use your real email if you aren't already (you'll likely be IP banned otherwise). chris #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -linkname => 'gene_pubmed', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n" On Jun 10, 2010, at 10:27 PM, Peng Yu wrote: > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 23:52:36 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 15:52:36 +1200 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E727@exchsth.agresearch.co.nz> I suspect it's not possible without getting ASN.1 back and parsing that. As you already have a working URL, why not use LWP? use LWP::Simple; my $content = get("http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476") or die $!; my @ids = grep(/\d+<\/Id>/,(split("\n",$content)); --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, 11 June 2010 3:27 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] Error when using EUtilities to download elink with > parameter LinkName=gene_pubmed > > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=g > ene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15 > 522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,86092 > 17,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017 > ,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609 > 217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,507569 > 4,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946, > 3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452, > 16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From armendarez77 at hotmail.com Fri Jun 11 01:08:22 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 22:08:22 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> References: , <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se>, <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz>, , <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> Message-ID: Thank you for all of the choices. The 'zgrep' command works a treat. Veronica > From: Russell.Smithies at agresearch.co.nz > To: cjfields at illinois.edu > CC: David.Messina at sbc.su.se; armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > Date: Fri, 11 Jun 2010 09:43:55 +1200 > Subject: RE: [Bioperl-l] Get GIs from Taxonomy ID > > That's the way I usually do it as NCBI/eUtils can be a bit flakey. > Not BioPerls fault of course ;-) > > zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' > > > > --Russell > > > -----Original Message----- > > From: Chris Fields [mailto:cjfields at illinois.edu] > > Sent: Friday, 11 June 2010 9:36 a.m. > > To: Smithies, Russell > > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > > bio.org' > > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > > > chris > > > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > > > Eutils will do it with the right query: > > > > > > > > > > > > > > > use Bio::DB::EUtilities; > > > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > > -db => 'nucleotide', > > > -term => 'txid9940[Organism:noexp]', > > > -email => 'mymail at foo.bar', > > > -retmax => 1000000); > > > > > > # query hits > > > print "Count = ",$factory->get_count,"\n"; > > > # UIDs > > > my @ids = $factory->get_ids; > > > > > > > > > --Russell > > > > > > > > >> -----Original Message----- > > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > > >> Sent: Friday, 11 June 2010 8:01 a.m. > > >> To: armendarez77 at hotmail.com > > >> Cc: bioperl-l at lists.open-bio.org > > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > >> > > >> Hi Veronica, > > >> > > >> These days when you run BLAST at the NCBI server, you're running > > BLAST+, > > >> which is their complete rewrite of (and replacement for) BLAST. > > >> > > >> You can also download BLAST+ and do pretty much everything on your > > local > > >> machine that you can do on their server, including limit by taxonomy. > > >> > > >> I think this is the right parameter: > > >> > > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > > >> ry > > >> > > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > > >> command line, run searches remotely on their server against their > > >> databases from the command line, just by adding the --remote flag. > > >> > > >> > > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > > by > > >> the way.) > > >> > > >> Dave > > >> > > >> > > >> > > >> On Jun 10, 2010, at 4:54 PM, wrote: > > >> > > >>> > > >>> Hello, > > >>> > > >>> Is there a BioPerl method that will give a list of GIs for a specified > > >> NCBI taxonomy Id? > > >>> > > >>> I've previously tried using Urlapi to BLAST primers against the nr > > >> database on the NCBI server, but recently I keep getting a > > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > > >> database. > > >>> > > >>> The problem I've run into is restricting the BLAST against the nr > > >> database to a subset of sequences. The NCBI Blast tools have an option > > (- > > >> l) that does this, but it requires a list of GI's. > > >>> > > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > > >> (Entrez Query). Therefore, is there a way to get all GIs within a > > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > > a > > >> Tax Id, but not the reverse. > > >>> > > >>> > > >>> Thank you, > > >>> > > >>> Veronica > > >>> > > >>> > > >>> > > >>> > > >>> _________________________________________________________________ > > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > > >> your inbox. > > >>> > > >> > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > > >> :WL:en-US:WM_HMP:042010_2 > > >>> _______________________________________________ > > >>> Bioperl-l mailing list > > >>> Bioperl-l at lists.open-bio.org > > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >> > > >> > > >> _______________________________________________ > > >> Bioperl-l mailing list > > >> Bioperl-l at lists.open-bio.org > > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > ======================================================================= > > > Attention: The information contained in this message and/or attachments > > > from AgResearch Limited is intended only for the persons or entities > > > to which it is addressed and may contain confidential and/or privileged > > > material. Any review, retransmission, dissemination or other use of, or > > > taking of any action in reliance upon, this information by persons or > > > entities other than the intended recipients is prohibited by AgResearch > > > Limited. If you have received this message in error, please notify the > > > sender immediately. > > > ======================================================================= > > > > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy is not the too busy. Combine all your e-mail accounts with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4 From sdavis2 at mail.nih.gov Fri Jun 11 10:36:45 2010 From: sdavis2 at mail.nih.gov (Sean Davis) Date: Fri, 11 Jun 2010 10:36:45 -0400 Subject: [Bioperl-l] [OT] Bioconductor Conference Message-ID: Sorry for the slightly off-topic message, but I think there are plenty of overlapping interests between bioperl and bioconductor. I wanted to announce the upcoming Bioconductor 2010 conference. Besides the email below, if there are questions that I can answer, let me know. Thanks, Sean ------------------- BioC 2010 is coming up quickly, and we urge you to sign up today! We're meeting July 29-30 (Developer Day July 28) in Seattle. There is a terrific line-up of speakers (see below) and the work shops are being finalized (see https://secure.bioconductor.org/BioC2010/labs.php for a preliminary list, subject to change). Also, we have introduced a special 'Flow Cytometery' track. This provides access to the Friday afternoon practicals sessions. These sessions will include, among others, practicals relevant to cytometry. Finally, the deadline for scholarship applications is June 15, just a few days away! Questions? Send email to biocworkshop at fhcrc.org Thursday 8:30 - 9:15 Atul Butte, Stanford Center for Biomedical Informatics Research. Exploring Genomic Medicine Through Integrative Bioinformatics. 9:15 - 10:00 Stephen Friend, SAGE Bionetworks. Risks and Opportunities for Disease Models based on Integrative Genomic Approaches. 10:30 - 11:15 Jay Shendure, University of Washington. Exome sequencing and human genetics. 11:15 - 12:00 To be confirmed. Friday 8:30 - 9:15 Simon Tavar?, University of Southern California. 9:15 - 10:00 Paul Flicek, European Bioinformatics Institute. Generation gap: How existing bioinformatics resources are adapting to high-throughput sequencing. 10:30 - 11:15 Lior Pachter, University of California, Berkeley. 11:15 - 12:00 Simon Anders, European Bioinformatics Institute. Inference of differential signal in high throughput sequencing count data. From jessica.sun at gmail.com Fri Jun 11 12:26:12 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:26:12 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Great ! Yet, how do you add this SNP as an Feature tag named as Variation into the gbk file format automatically? thx On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > Nice, Chris! > > I've added it to the EUtils cookbook. > > Dave > > > > On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > > > It's much easier to work with the GI than the accession. NCBI > unfortunately just recently 'broke' their acc->gi stuff via efetch; you have > to use rettype='seqid' and munge ASN.1 to get everything (though it is nice > in a way for ID mapping). > > > > After the initial step of grabbing the GI for NG_011506, though, you can > use elink to grab the SNP IDs, then use efetch to get the actual SNP files, > or esummary for the summary info. > > > > #!/usr/bin/perl -w > > > > use Modern::Perl; > > use Bio::DB::EUtilities; > > > > my $id = '224809339'; > > > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > > -id => $id, > > -email => 'setyourown at foo.bar', > > -verbose => 1, > > -dbfrom => 'nuccore', > > -db => 'snp', > > -cmd => 'neighbor_history', > > ); > > > > my $hist = $eutil->next_History || die "No history data returned"; > > > > $eutil->set_parameters(-eutil => 'efetch', > > -history => $hist, > > -retmode => 'text', > > # 'chr', 'flt', 'brief', 'rsr', 'docset' > > -rettype => 'chr' > > ); > > > > $eutil->get_Response(-file => 'snps.txt'); > > > > # or ... > > > > $eutil->set_parameters(-eutil => 'esummary', > > -history => $hist, > > ); > > > > $eutil->print_all; > > > > # chris > > > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > > > >> Thanks Dave. > >> the variation information is not present in the version of NG_011506 I > found > >> at Genbank.) -- Yes, then if you click on the right side customer view > there > >> is a check box Features added by NCBI :209 snps, if you check that it > will > >> add all the variations in the gbk fomat. I found this would be a neat > >> feature if it can automatically load by bioperl with an option turn on. > >> > >> > >> > >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >wrote: > >> > >>> Hi Jessica, > >>> > >>> Please keep the BioPerl list on the Cc line so everyone can follow > along. > >>> > >>> > >>>> Follow your approach it did not seem to me you can have Variation tag > >>> included which > >>>> list the know dbSNP location, id and allele changes? > >>> > >>> Ah okay, I assumed the file you attached was obtained directly from > Genbank > >>> and that the variation info therein was already included. (It appears > that's > >>> not the case ? the variation information is not present in the version > of > >>> NG_011506 I found at Genbank.) > >>> > >>> If you want to include your own custom information in a genbank file, > >>> you'll have to pull it out of dbSNP (or wherever the variation info > is). > >>> There are a couple of scripts that might be able to help with that > (search > >>> for snp): > >>> > >>> http://www.bioperl.org/wiki/Bioperl_scripts > >>> > >>> > >>> You can then insert them into a RichSeq object as features and output > in > >>> genbank format. For that part, see the HOWTO: > >>> > >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>> > >>> > >>> Dave > >>> > >>> > >> > >> > >> -- > >> Jessica Jingping Sun > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > -- Jessica Jingping Sun From cjfields at illinois.edu Fri Jun 11 12:30:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 11 Jun 2010 11:30:59 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. chris On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > into the gbk file format automatically? > > thx > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > >> Nice, Chris! >> >> I've added it to the EUtils cookbook. >> >> Dave >> >> >> >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: >> >>> It's much easier to work with the GI than the accession. NCBI >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you have >> to use rettype='seqid' and munge ASN.1 to get everything (though it is nice >> in a way for ID mapping). >>> >>> After the initial step of grabbing the GI for NG_011506, though, you can >> use elink to grab the SNP IDs, then use efetch to get the actual SNP files, >> or esummary for the summary info. >>> >>> #!/usr/bin/perl -w >>> >>> use Modern::Perl; >>> use Bio::DB::EUtilities; >>> >>> my $id = '224809339'; >>> >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', >>> -id => $id, >>> -email => 'setyourown at foo.bar', >>> -verbose => 1, >>> -dbfrom => 'nuccore', >>> -db => 'snp', >>> -cmd => 'neighbor_history', >>> ); >>> >>> my $hist = $eutil->next_History || die "No history data returned"; >>> >>> $eutil->set_parameters(-eutil => 'efetch', >>> -history => $hist, >>> -retmode => 'text', >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' >>> -rettype => 'chr' >>> ); >>> >>> $eutil->get_Response(-file => 'snps.txt'); >>> >>> # or ... >>> >>> $eutil->set_parameters(-eutil => 'esummary', >>> -history => $hist, >>> ); >>> >>> $eutil->print_all; >>> >>> # chris >>> >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: >>> >>>> Thanks Dave. >>>> the variation information is not present in the version of NG_011506 I >> found >>>> at Genbank.) -- Yes, then if you click on the right side customer view >> there >>>> is a check box Features added by NCBI :209 snps, if you check that it >> will >>>> add all the variations in the gbk fomat. I found this would be a neat >>>> feature if it can automatically load by bioperl with an option turn on. >>>> >>>> >>>> >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >> wrote: >>>> >>>>> Hi Jessica, >>>>> >>>>> Please keep the BioPerl list on the Cc line so everyone can follow >> along. >>>>> >>>>> >>>>>> Follow your approach it did not seem to me you can have Variation tag >>>>> included which >>>>>> list the know dbSNP location, id and allele changes? >>>>> >>>>> Ah okay, I assumed the file you attached was obtained directly from >> Genbank >>>>> and that the variation info therein was already included. (It appears >> that's >>>>> not the case ? the variation information is not present in the version >> of >>>>> NG_011506 I found at Genbank.) >>>>> >>>>> If you want to include your own custom information in a genbank file, >>>>> you'll have to pull it out of dbSNP (or wherever the variation info >> is). >>>>> There are a couple of scripts that might be able to help with that >> (search >>>>> for snp): >>>>> >>>>> http://www.bioperl.org/wiki/Bioperl_scripts >>>>> >>>>> >>>>> You can then insert them into a RichSeq object as features and output >> in >>>>> genbank format. For that part, see the HOWTO: >>>>> >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>>>> >>>>> >>>>> Dave >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jessica Jingping Sun >>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Fri Jun 11 12:33:07 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:33:07 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: That was what I thought as well. It will be very nice that it can be done within bioperl as well. On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the > result is either cached or run on-the-fly. When I retrieved the full-length > record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > > > thx > > > > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina >wrote: > > > >> Nice, Chris! > >> > >> I've added it to the EUtils cookbook. > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > >> > >>> It's much easier to work with the GI than the accession. NCBI > >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you > have > >> to use rettype='seqid' and munge ASN.1 to get everything (though it is > nice > >> in a way for ID mapping). > >>> > >>> After the initial step of grabbing the GI for NG_011506, though, you > can > >> use elink to grab the SNP IDs, then use efetch to get the actual SNP > files, > >> or esummary for the summary info. > >>> > >>> #!/usr/bin/perl -w > >>> > >>> use Modern::Perl; > >>> use Bio::DB::EUtilities; > >>> > >>> my $id = '224809339'; > >>> > >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > >>> -id => $id, > >>> -email => 'setyourown at foo.bar', > >>> -verbose => 1, > >>> -dbfrom => 'nuccore', > >>> -db => 'snp', > >>> -cmd => 'neighbor_history', > >>> ); > >>> > >>> my $hist = $eutil->next_History || die "No history data returned"; > >>> > >>> $eutil->set_parameters(-eutil => 'efetch', > >>> -history => $hist, > >>> -retmode => 'text', > >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' > >>> -rettype => 'chr' > >>> ); > >>> > >>> $eutil->get_Response(-file => 'snps.txt'); > >>> > >>> # or ... > >>> > >>> $eutil->set_parameters(-eutil => 'esummary', > >>> -history => $hist, > >>> ); > >>> > >>> $eutil->print_all; > >>> > >>> # chris > >>> > >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >>> > >>>> Thanks Dave. > >>>> the variation information is not present in the version of NG_011506 I > >> found > >>>> at Genbank.) -- Yes, then if you click on the right side customer view > >> there > >>>> is a check box Features added by NCBI :209 snps, if you check that it > >> will > >>>> add all the variations in the gbk fomat. I found this would be a neat > >>>> feature if it can automatically load by bioperl with an option turn > on. > >>>> > >>>> > >>>> > >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >>> wrote: > >>>> > >>>>> Hi Jessica, > >>>>> > >>>>> Please keep the BioPerl list on the Cc line so everyone can follow > >> along. > >>>>> > >>>>> > >>>>>> Follow your approach it did not seem to me you can have Variation > tag > >>>>> included which > >>>>>> list the know dbSNP location, id and allele changes? > >>>>> > >>>>> Ah okay, I assumed the file you attached was obtained directly from > >> Genbank > >>>>> and that the variation info therein was already included. (It appears > >> that's > >>>>> not the case ? the variation information is not present in the > version > >> of > >>>>> NG_011506 I found at Genbank.) > >>>>> > >>>>> If you want to include your own custom information in a genbank file, > >>>>> you'll have to pull it out of dbSNP (or wherever the variation info > >> is). > >>>>> There are a couple of scripts that might be able to help with that > >> (search > >>>>> for snp): > >>>>> > >>>>> http://www.bioperl.org/wiki/Bioperl_scripts > >>>>> > >>>>> > >>>>> You can then insert them into a RichSeq object as features and output > >> in > >>>>> genbank format. For that part, see the HOWTO: > >>>>> > >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>>>> > >>>>> > >>>>> Dave > >>>>> > >>>>> > >>>> > >>>> > >>>> -- > >>>> Jessica Jingping Sun > >>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >> > >> > > > > > > -- > > Jessica Jingping Sun > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Fri Jun 11 17:43:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 11 Jun 2010 23:43:35 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: <2332DA3A-27E0-478A-8FC6-910A9E087BB3@sbc.su.se> On Jun 11, 2010, at 6:33 PM, Jessica Sun wrote: > That was what I thought as well. It will be very nice that it can be done within bioperl as well. Just to clarify, it can be done within BioPerl, but manually. That is, you'll have to take the SNP information you have retrieved using the code Chris posted and then add it as features to the RichSeq object, which is BioPerl's internal representation of a Genbank record. I don't think that this complicated set of procedures would fit very neatly into BioPerl as a more automatic thing, but of course if anyone is interested in coding it up we're more than happy to help find a place for it... Dave > > On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > From ross at cuhk.edu.hk Mon Jun 14 08:48:28 2010 From: ross at cuhk.edu.hk (Ross KK Leung) Date: Mon, 14 Jun 2010 20:48:28 +0800 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> Message-ID: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> If I have an accession number for an mRNA/cDNA/gene (e.g. http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I retrieve the genbank file and parse /dbxref then I may sometimes be able to get some extra information but then the page is not readily usable, e.g. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo rt&list_uids=24377 is there any way to automatically retrieve its upstream & downstream genomic sequence (e.g. 500bp)? From David.Messina at sbc.su.se Mon Jun 14 09:57:30 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 14 Jun 2010 15:57:30 +0200 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <20B7D7C0-137D-4EFB-9E7B-2DB0F5EB6785@sbc.su.se> Hi Ross, The code examples here should work: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#esummary_-.3E_efetch except you'll need to change the seq_start and seq_stop parameters to include your extra bases. i.e. -seq_start => $start + 1 - 500, -seq_stop => $end + 1 + 500, I haven't tested this ? you may need to take the strand information into account when adding or subtracting from the start and end positions. DAve From jay at jays.net Mon Jun 14 12:30:57 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 11:30:57 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() Message-ID: Hola, I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be adding one unless someone points out that this is a bad idea for some reason. Also, this seems insufficient for a branch, so it'll just be a single commit to master unless someone slaps me. Thanks, Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From lincoln.stein at gmail.com Mon Jun 14 12:35:28 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 14 Jun 2010 12:35:28 -0400 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: I suggest that you use Data::Dumper to implement clone (or alternatively Storable's dclone() method). I just had a look at how I did the clone in Lite, and it is a bit fragile if someone subclasses Lite. I also think there is a Clone module in CPAN. Lincoln On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > Hola, > > I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite > has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be > adding one unless someone points out that this is a bad idea for some > reason. > > Also, this seems insufficient for a branch, so it'll just be a single > commit to master unless someone slaps me. > > Thanks, > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From cjfields at illinois.edu Mon Jun 14 12:58:40 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 14 Jun 2010 11:58:40 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: <0BF96232-1390-42CD-9515-06A5D66C3B2E@illinois.edu> Both Data::Dumper and Storable are part of perl core now. I've used Clone.pm w/o problems in some of my code, and wouldn't have a problem adding that as a dependency for bioperl (it's currently listed as a recommended module). chris On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). I just had a look at how I did the clone in > Lite, and it is a bit fragile if someone subclasses Lite. > > I also think there is a Clone module in CPAN. > > Lincoln > > On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > >> Hola, >> >> I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite >> has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be >> adding one unless someone points out that this is a bad idea for some >> reason. >> >> Also, this seems insufficient for a branch, so it'll just be a single >> commit to master unless someone slaps me. >> >> Thanks, >> >> Jay Hannah >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jason at bioperl.org Mon Jun 14 14:48:11 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 14 Jun 2010 14:48:11 -0400 Subject: [Bioperl-l] Script to Calculate Pairwise Ka,Ks In-Reply-To: References: Message-ID: <4C16796B.4090909@bioperl.org> I think you can also just add that clustal dir in your PATH. I'm fwding to bioperl list for help as I don't have time to debug right now, sorry. -jason Haktan Suren wrote, On 6/14/10 1:50 PM: > Dear Jason Stajich, > > First of all, I would like to thank you for the great script that you > wrote. However I wasn't able to run it because it gives me the > fallowing error. I have looked into web but haven't found the solution > yet. I appreciate if you could provide me any kind of help. > > The error is > Could not find the executable for clustalw, make sure you have > installed it and have either set CLUSTALWDIR or it is in your PATH at > kaks2.pl line 108. > For your information, I have downloaded clustalw-2.0.12-macosx.dmg > > from http://www.clustal.org/download/current/ and pointed this > software at the very beginning of the code like > BEGIN { $ENV{CLUSTALDIR} = > '/Users/hsuren/Downloads/BioPerl-1.6.1/Bio/Tools/Run/Alignment/clustalw/clustalw2/' > } > But it still gives me the same error. I am attaching the perl script > as well incase you need. > > > ------------------------------------------------------------------------ > > > Best Regards, > Haktan Suren > From jay at jays.net Mon Jun 14 16:30:05 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 15:30:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). Here's my stab-so-far at using Storable dclone(): http://github.com/bioperl/bioperl-live/tree/topic/jhannah-seqfeature-clone Any and all feedback most welcome. I've never modified Root.pm before. Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From roi.brodo at hotmail.com Wed Jun 16 03:10:45 2010 From: roi.brodo at hotmail.com (Roi Brodo) Date: Wed, 16 Jun 2010 07:10:45 +0000 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA Message-ID: Hello, Suppose I have some circular DNA RefSeq in a Genbank format. I would like to create a new (smaller) Genbank file (both features and sequence) containing only a range of nucleotides from the original file, but a range tha overlaps the "end". For example, if my original Genbank spans 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, 1-100,000), so the new Genbank file will actually contain 300,000 bp from the circular DNA. How can I do that? Again, my input is a Genbank file and output should also be a Gebnank file. Thanks! - Roi _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From roy.chaudhuri at gmail.com Wed Jun 16 06:07:35 2010 From: roy.chaudhuri at gmail.com (Roy Chaudhuri) Date: Wed, 16 Jun 2010 11:07:35 +0100 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA In-Reply-To: References: Message-ID: <4C18A267.4050000@gmail.com> Hi Roi, You need the trunc_with_features and cat methods in Bio::SeqUtils (haven't tested this code but I think it should work): use Bio::SeqIO; use Bio::SeqUtils; my $seq=Bio::SeqIO->new(-file=>$ARGV[0], -format=>'genbank')->next_seq; my $first=Bio::SeqUtils->trunc_with_features($seq, 800000, 1000000); my $second=Bio::SeqUtils->trunc_with_features($seq, 1, 100000); Bio::SeqUtils->cat($first, $second); Bio::SeqIO->new(-format=>'genbank')->write_seq($first); Cheers. Roy. On 16/06/2010 08:10, Roi Brodo wrote: > > Hello, > > > > Suppose I have some circular DNA RefSeq in a Genbank format. I would > like to create a new (smaller) Genbank file (both features and sequence) > containing only a range of nucleotides from the original file, but a > range tha overlaps the "end". For example, if my original Genbank spans > 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, > 1-100,000), so the new Genbank file will actually contain 300,000 bp > from the circular DNA. > > > > How can I do that? Again, my input is a Genbank file and output should > also be a Gebnank file. > > > > Thanks! > > - Roi > > > > > > > > > > > _________________________________________________________________ > The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. > http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From kai.blin at biotech.uni-tuebingen.de Thu Jun 17 04:23:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Thu, 17 Jun 2010 10:23:29 +0200 Subject: [Bioperl-l] Getting the HMMer3 parser integrated into the next BioPerl release, call for testing Message-ID: <1276763009.31442.8.camel@mikropc7.biotech.uni-tuebingen.de> Hi folks, in the past days, I've been working on the tests for the HMMer3 parser, and with my last commits all the tests are passing for all the output files I've seen. So I'd like to propose the bioperl-hmmer3[1] tree to be merged into the main tree for the next BioPerl release. Of course, if there's still some corner cases the parser doesn't handle that you're running into, please send me an output file showing the problem you're seeing, or, even better, send me a patch. :) Cheers, Kai [1] http://github.com/bioperl/bioperl-hmmer3 -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From jun.yin at ucd.ie Thu Jun 17 06:24:50 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 11:24:50 +0100 Subject: [Bioperl-l] Interface of the method Message-ID: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin From tuco at pasteur.fr Thu Jun 17 07:49:18 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 13:49:18 +0200 Subject: [Bioperl-l] Bio module using Moose Message-ID: <4C1A0BBE.3060304@pasteur.fr> Hi guys, I developed some new modules for BioPerl under Bio::Restriction. However, I used Moose to help me out writing code. Do you think I could submit these modules to BioPerl to be later integrated, hopefully, the way they are written (with Moose dependency)? Cheers -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From cjfields at illinois.edu Thu Jun 17 09:12:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 08:12:30 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A0BBE.3060304@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: Emmanuel, I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: http://github.com/cjfields/biome This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. Let me know if you want to go with the first one, I can add you to the project. chris On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > Hi guys, > > I developed some new modules for BioPerl under Bio::Restriction. > However, I used Moose to help me out writing code. > Do you think I could submit these modules to BioPerl to be later > integrated, hopefully, the way they are written (with Moose dependency)? > > Cheers > > -- > ------------------------- > Emmanuel Quevillon > Biological Software and Databases Group > Institut Pasteur > +33 1 44 38 95 98 > tuco at_ pasteur dot fr > ------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Thu Jun 17 09:42:08 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 14:42:08 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <008101cb0e22$e1657230$a4305690$%yin@ucd.ie> BTW, I am a student in the Google Summer of Code 2010. I am currently working on refactoring the Bio::Align subsystem. If you are interested in this project, please visit my coding blog: http://gsoc2010-junyin.blogspot.com/ Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Jun Yin Sent: Thursday, June 17, 2010 11:25 AM To: bioperl-l at lists.open-bio.org Cc: jun.yin at ucd.ie Subject: [Bioperl-l] Interface of the method Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From tuco at pasteur.fr Thu Jun 17 09:46:41 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 15:46:41 +0200 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: <4C1A2741.2080604@pasteur.fr> On 06/17/2010 03:12 PM, Chris Fields wrote: > Emmanuel, > > I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: > > 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > > http://github.com/cjfields/biome > Hi Chris, Yep I've seen it already from one of your email on the Moose list :) I can try plug my modules to your project, however my code might be not as evolved as yours, so it could need some improvements and tuning to run faster and better. > This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > > 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. > Well I don't really know. Let me think about it (between github and CPAN), I'll also need to read and understand carefully your biome project. Moreover, as already said in my previous emails, I am not very ease with Moose right now.... Anyway what I can do it to change my code to better fit with actual implementation of BioPerl 1.6 and send it to the team for later integration? I can also send you my Moosified version to have a look? Let me know Regards Emmanuel > Let me know if you want to go with the first one, I can add you to the project. > > chris > > On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > >> Hi guys, >> >> I developed some new modules for BioPerl under Bio::Restriction. >> However, I used Moose to help me out writing code. >> Do you think I could submit these modules to BioPerl to be later >> integrated, hopefully, the way they are written (with Moose dependency)? >> >> Cheers >> >> -- >> ------------------------- >> Emmanuel Quevillon >> Biological Software and Databases Group >> Institut Pasteur >> +33 1 44 38 95 98 >> tuco at_ pasteur dot fr >> ------------------------- >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From scott at scottcain.net Thu Jun 17 10:55:11 2010 From: scott at scottcain.net (Scott Cain) Date: Thu, 17 Jun 2010 10:55:11 -0400 Subject: [Bioperl-l] GMOD Meeting Announcement: September 13-14 in Cambridge, England Message-ID: Hello, Thanks to the prep work by Gos Micklem at Cambridge, I am pleased to announce that there will be a two day GMOD community meeting starting on Monday Septermber 13 in Cambridge, England. This meeting occurs immediately prior to the Genome Informatics meeting in Hinxton (for which the abstract deadline is June 25). Registration information for this meeting will be available in a few weeks, though I will accept suggestions for presentations now. Please feel free to forward this to colleagues or mailing lists that you think would be interested in this meeting. I look forward to seeing you in England this Fall. Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From russkieknigi at mail.ru Thu Jun 10 19:45:11 2010 From: russkieknigi at mail.ru (=?windows-1251?Q?=C0?=) Date: Fri, 11 Jun 2010 03:45:11 +0400 Subject: [Bioperl-l] =?windows-1251?q?a_possible_issue_in_synopsis_of___Bi?= =?windows-1251?b?b1BlcmwtMS42LjEgID4gIEJpbzo6UmVzdHJpY3Rpb246OkFu?= =?windows-1251?q?alysis?= Message-ID: Hi, An attempt to run synopsis code as is results in the following runtime error: Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. Replacing this: my $enzymes = $ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->unique_cutters), "\n"; with the following code: my $enzymes=$ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed results in an error message-free execution and the output appears reasonable Cheers, Alex From stefan.kirov at bms.com Tue Jun 15 10:39:48 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Tue, 15 Jun 2010 10:39:48 -0400 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <4C1790B4.1090307@bms.com> Try the ensembl API http://www.ensembl.org/info/docs/api/core/core_tutorial.html Cheers, Stefan On 6/14/2010 8:48 AM, Ross KK Leung wrote: > If I have an accession number for an mRNA/cDNA/gene (e.g. > http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I > retrieve the genbank file and parse /dbxref then I may sometimes be able to > get some extra information but then the page is not readily usable, e.g. > > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo > rt&list_uids=24377 > > is there any way to automatically retrieve its upstream& downstream genomic > sequence (e.g. 500bp)? > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From stefan.kirov at bms.com Thu Jun 17 10:53:32 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Thu, 17 Jun 2010 10:53:32 -0400 Subject: [Bioperl-l] Firefox extension project Message-ID: <4C1A36EC.9000204@bms.com> There isn't much about perl in this post, so I apologize for spamming the list, but I assumed there would be people interested in this. Please do not reply to the list, again this is not bioperl related. I have opened sourced a Firefox extension I have been developing and using for a while. The whole idea is to have a sequence analysis swiss army knife built in right in the browser. I started with incorporating some cool Javascript libraries, written by Paul Stothard (http://www.bioinformatics.org/sms2/). I have not incorporated all of those, but will if I find the time. In addition, you can decide to install emboss and clustalw (the extension comes with the source for clustal and emboss) and run them locally, which can be handy. I have started working also on SVG biograph libraries but these are quite incomplete, but I have been able to implement one graphical viewer- ORF finder, which I find quite handy. There are basic sequence parsing and fetching (NCBI) as well. Other things that work: very simple logical operations on sets, protein digest/ion generation tool. Sequence lists and projects should be functional in next release. There are 2 way to access the tools: right click and by opening the sidebar. The code behind this project is mainly Javascript, XUL, CSS and shell wrapper scripts. There is also some sqlite involved. I would be interested to hear any feedback, but would be even more excited if there are people who know these technologies (or willing to learn) and want to join in. Testers are also more than welcome. Since this is prealpha you need to be careful- I would advise anyone to have this extension installed in a non-production environment. I will upload a VirtualBox image to the SVN project in the next few days as well. Here is the project page: https://sourceforge.net/projects/biobrowserext/ Best way to contact me is kirovs at gmail Finally, developing extensions in firefox is just as much fun as programming perl (maybe more ;-) ). Cheers, Stefan Kirov -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From arthur11985 at hotmail.com Mon Jun 14 00:04:26 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Mon, 14 Jun 2010 04:04:26 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , Message-ID: Hi there I cannot access module Bio::Factory::EMBOSS; after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? my code is like following. #!/usr/bin/perl use warnings; use strict; use Bio::Factory::EMBOSS; Yours sincerely Arthur _________________________________________________________________ Looking for a place to manage all your online stuff? Download the new Windows Live http://download.live.com From julia.davison83 at googlemail.com Thu Jun 17 05:03:19 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Thu, 17 Jun 2010 02:03:19 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac Message-ID: <28912041.post@talk.nabble.com> Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From David.Messina at sbc.su.se Thu Jun 17 18:57:29 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 00:57:29 +0200 Subject: [Bioperl-l] a possible issue in synopsis of BioPerl-1.6.1 > Bio::Restriction::Analysis In-Reply-To: References: Message-ID: Hi Alex, Thanks for the report. Looks like that synopsis code no longer exists in the latest version of BioPerl. See http://github.com/bioperl/bioperl-live/blob/master/Bio/Restriction/EnzymeCollection.pm Dave On Jun 11, 2010, at 01:45 , ? wrote: > Hi, > > An attempt to run synopsis code as is results in the following runtime error: > > Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. > > Replacing this: > my $enzymes = $ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->unique_cutters), "\n"; > > > with the following code: > my $enzymes=$ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed > > results in an error message-free execution and the output appears reasonable > > Cheers, > Alex > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 17 19:48:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 01:48:35 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave From florent.angly at gmail.com Thu Jun 17 22:21:31 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 12:21:31 +1000 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: References: , Message-ID: <4C1AD82B.6070005@gmail.com> Hi Arthur, The message is quite descriptive... BioPerl cannot be found on your computer. This obviously leads to the question: how did you install BioPerl? See this for details on installing BioPerl: http://www.bioperl.org/wiki/Installing_BioPerl Regards, Florent On 14/06/10 14:04, Arthur Lin wrote: > Hi there > > I cannot access module Bio::Factory::EMBOSS; > after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? > > my code is like following. > > #!/usr/bin/perl > > use warnings; > use strict; > > use Bio::Factory::EMBOSS; > > Yours sincerely > Arthur > _________________________________________________________________ > Looking for a place to manage all your online stuff? Download the new Windows Live > http://download.live.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From florent.angly at gmail.com Thu Jun 17 23:36:14 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 13:36:14 +1000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , , <4C1AD82B.6070005@gmail.com> Message-ID: <4C1AE9AE.5030807@gmail.com> Arthur, Please when replying, use 'reply all'. Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. Thanks, Florent On 18/06/10 12:40, Arthur Lin wrote: > Hi Florent > > Thank you for your correspondence. I still have the same problem after > I followed the instruction on installing_BioPerl and installed through > cpan. > During the installation, I followed through the entire process with > default option. > Have you encountered anyone who has similar problem? > > Yours sincerely > Arthur > > > Date: Fri, 18 Jun 2010 12:21:31 +1000 > > From: florent.angly at gmail.com > > To: arthur11985 at hotmail.com > > CC: bioperl-l at bioperl.org > > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? > > > > Hi Arthur, > > > > The message is quite descriptive... BioPerl cannot be found on your > > computer. This obviously leads to the question: how did you install > BioPerl? > > See this for details on installing BioPerl: > > http://www.bioperl.org/wiki/Installing_BioPerl > > Regards, > > > > Florent > > > > > > > ------------------------------------------------------------------------ > Browse profiles for Free! Singles online now! > From cjfields at illinois.edu Thu Jun 17 23:52:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 22:52:20 -0500 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> <4C1AE9AE.5030807@gmail.com> Message-ID: <9C7D5D52-2656-4C9D-A9E9-09B7CD0539BE@illinois.edu> Bio::Factory::EMBOSS is in BioPerl-Run (a separate package), not BioPerl. You need to install that separately. chris On Jun 17, 2010, at 10:36 PM, Florent Angly wrote: > Arthur, > Please when replying, use 'reply all'. > Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. > Thanks, > Florent > > On 18/06/10 12:40, Arthur Lin wrote: >> Hi Florent >> >> Thank you for your correspondence. I still have the same problem after I followed the instruction on installing_BioPerl and installed through cpan. >> During the installation, I followed through the entire process with default option. >> Have you encountered anyone who has similar problem? >> >> Yours sincerely >> Arthur >> >> > Date: Fri, 18 Jun 2010 12:21:31 +1000 >> > From: florent.angly at gmail.com >> > To: arthur11985 at hotmail.com >> > CC: bioperl-l at bioperl.org >> > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? >> > >> > Hi Arthur, >> > >> > The message is quite descriptive... BioPerl cannot be found on your >> > computer. This obviously leads to the question: how did you install BioPerl? >> > See this for details on installing BioPerl: >> > http://www.bioperl.org/wiki/Installing_BioPerl >> > Regards, >> > >> > Florent >> > >> > >> >> >> ------------------------------------------------------------------------ >> Browse profiles for Free! Singles online now! > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From anthony.goldbloom at googlemail.com Thu Jun 17 19:32:16 2010 From: anthony.goldbloom at googlemail.com (Anthony Goldbloom) Date: Fri, 18 Jun 2010 09:32:16 +1000 Subject: [Bioperl-l] What has bioinformatics ever done for us? Message-ID: <68E72261-DAED-4C7A-98E1-574AEFB00C88@gmail.com> I'm passing this around the bioinformatics community as I think it's an interesting initiative. A British bioinformatician wants to open discussion about the greatest biological discovery made possible by bioinformatics. He has just launched a "brainstorming competition" with a small cash prize to stoke discussion. Kaggle is hosting the "brainstorming competition" at: http://kaggle.com/blog/2010/06/17/%EF%BB%BFwhat-has-bioinformatics-ever-done-for-us Hopefully members of this mailing list can contribute suggestions. Anthony ps Apologies for cross posting. From premkrishnanbv at gmail.com Fri Jun 18 01:14:27 2010 From: premkrishnanbv at gmail.com (Prem) Date: Fri, 18 Jun 2010 10:44:27 +0530 Subject: [Bioperl-l] "500 Cannot connect to ----------- (Bad Host name)" Message-ID: Dear friends We urgently need somebody's help to solve a problem in Bioperl. We are actually trying to develop an online tool for sequence analysis in linux pltaform (RedHat). The first part of the program is to retrieve sequences from ncbi.nlm.nih.gov . We wrote code for that. We are using redhat linux. We can run the program successfully through terminal. It creates a fasta file of the retrieved sequences and prints the count of the sequences. Now the problem is, when we try to run it in the browser using cgi perl its not working. When we checked the error_log it says something like this, "500 Cannot connect to ----------- (Bad Host name)" We have given full file permission using chmod 777 *. File is in the directory cgi-bin. We are using Apache/2.2.3(redhat). We try to call this perl script as a submit button action (online submission form). Here we are pasting the code for your kind consideration. Kindly help us... -------------------------------------------------------------------------------------- *newtest.cgi* - sequence retrieval program -------------------------------------------------------------------------------------- #!/usr/bin/perl print "Content-Type: text/html\n\n"; use Bio::Perl; use Bio::DB::GenBank; use Bio::DB::Query::GenBank; my $db = Bio::DB::GenBank->new(); my $query = Bio::DB::Query::GenBank->new (-db => 'nucleotide', -query => "Cocos nucifera[Organism]"); my $count = $query->count; my $stream = $db->get_Stream_by_query($query); while( my $seq = $stream->next_seq ) { write_sequence(">>Cocos_nucifera.fasta",'fasta',$seq); } print $count; -------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- *test.html* - sample html page --------------------------------------------------------------------------------------
 
Scientific name
(eg. Homo sapiens for human, Cocos nucifera for coconut etc.)
 
-------------------------------------------------------------------------------------- regards Prem krishnan B V Centre for Bioinformatics University of Kerala Kariavattom Campus Thiruvananthapuram From florent.angly at gmail.com Fri Jun 18 01:39:39 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 15:39:39 +1000 Subject: [Bioperl-l] Status of assembly modules In-Reply-To: References: Message-ID: <4C1B069B.5020105@gmail.com> Hi Joshua, Yes, there have been interesting improvements in the assembly BioPerl module since v1.6.1. You can find these changes in the development version of BioPerl at http://github.com/bioperl/. I'll take this opportunity to introduce people who don't follow the commit messages to the new features that have been introduced: First, there is support for more file formats from high-throughput platforms, including those generated by de novo assembly and comparative assembly tools, such as: * Roche 454 GS Assembler, aka Newbler (the ACE-454 variant) * Maq * Sam * Bowtie There is support for running a lot more of these tools in Bioperl-run Bio::Tools::Run : * Roche 454 GS Assembler, aka Newbler * Minimo * Maq * Samtools * Bowtie In terms of writing assembly file, I added the option to write ACE files, which is quite useful because maybe assembly programs recognize this format. So now you can read assemblies, modify them as you see fit and exporting them to other programs by writing the modified assembly in an ACE file. The internals of the IO parsers have acquired some granularity as it is now possible to read/write assembly files entirely, or one contig at a time. This is terrific to reduce memory usage. That's about it... Regards, Florent PS/ Josh, you filed bug reports related to several of these issues (http://bugzilla.open-bio.org/show_bug.cgi?id=2726, http://bugzilla.open-bio.org/show_bug.cgi?id=2483). I am closing the ones that were not closed yet and thank you for submitting patches. On 18/06/10 14:00, Joshua Udall wrote: > Florent - > > I didn't want to ask a direct question on-list to perhaps avoid > confusion. Were you able to improve/submit a ContigIO to bioperl that > works with one entry at a time (instead of slurping the entire ace > file)? > > From David.Messina at sbc.su.se Fri Jun 18 05:37:31 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 11:37:31 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Message-ID: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave From awitney at sgul.ac.uk Fri Jun 18 05:39:15 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Fri, 18 Jun 2010 10:39:15 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> On 17 Jun 2010, at 10:03, perlcurl wrote: > I have the Bioperl files downloaded, but when I try to run a simple script > (even just use Bio::Perl, which has been suggested as an easy test), I get > this message: "Can't locate Bio/Perl.pm in @INC " followed by a long > directry list. Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be located in that "long directory list" for Perl to find it. Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix HTH adam From jun.yin at ucd.ie Fri Jun 18 04:59:29 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 09:59:29 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Hi, Dave, Thx a million for your reply. But I have to say I am a bit confused. In the BioPerl guide, http://www.bioperl.org/wiki/Advanced_BioPerl They say that, Capital word should be used for methods returning objects, for example $aln->get_SeqFeatures; #which returns Bio::SeqFeature objects So, $aln->select() actually returns Bio::LocatableSeq objects, I think it is probably better to use $aln->select_Seqs; For the $new_aln=$aln->select_Seqs([1,3,5..10,15],"toggle"); I am thinking of assigning the first argument of the methods as coordinates or position of the sequences, and the rest of the arguments are parameters. Thus an array reference [1,3,5..10] seems better than a list (1,3,5..10), the latter will be hard to recognize the other parameters. I plan to write: Sub select_Seqs { my($self, at args)=@_; my %params; my @new_coords; if(ref($args[0] eq "ARRAY") { my $coords=shift @args; #@newcoords=_cont_coord($coords); #do something with the cords reference } else { #some warning } #do something with the other parameters if(@args) { @{$params{@args}}=undef; #do something to recognize the other parameters } #rest of the code } And of course, I can write a method as you suggest $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); Then maybe I should write all the methods in this package, which receives multiple arguments, using this way. Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Dave Messina [mailto:David.Messina at sbc.su.se] Sent: Friday, June 18, 2010 12:49 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:43:38 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:43:38 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of perlcurl Sent: Thursday, June 17, 2010 10:03 AM To: Bioperl-l at lists.open-bio.org Subject: [Bioperl-l] Install problem, Mac Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:47:30 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:47:30 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Message-ID: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Hi, Dave, No problem. I think your suggestion of using $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); is more reasonable. It is a more BioPerl way of defined parameters. And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); will also be recognized for the simplicity of use. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina Sent: Friday, June 18, 2010 10:38 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 09:41:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 08:41:32 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Fri Jun 18 11:05:41 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 16:05:41 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Hi, Chris, Ok, I see. Then it is better to support a call of the method like: $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); and, $newaln=$aln->select_Seqs([1, 3, 5..10,15]); But '-seqs' doesnot sound very good, I will prefer '-orders'. Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Chris Fields [mailto:cjfields at illinois.edu] Sent: Friday, June 18, 2010 2:42 PM To: Jun Yin Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 11:26:33 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 10:26:33 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Message-ID: <5A6D64AF-0EFB-427A-899D-E7FB43ADDAA2@illinois.edu> Jun, Have to go back and see what 'toggle' does, but beyond that changing it works for me. Just to note, if this is a change directly in Bio::SimpleAlign or a modification of the Bio::Align::AlignI interface we will need to add deprecation warnings to the older methods (can't just remove them). If this a newer interface then it won't be as much of a problem, but we also can't just change Bio::AlignIO to return these instead. We can now easily do this so they go off with a predetermined minor version of Bio::Root::Root, see Bio::SimpleAlign::no_sequences/num_sequences for an example using deprecated(). (Note: At some point this deprecated may need to be modified to rely more on the module's version number, such as cases where we split off code and it will need a separate numbering scheme. But for now it works). chris On Jun 18, 2010, at 10:05 AM, Jun Yin wrote: > Hi, Chris, > > Ok, I see. Then it is better to support a call of the method like: > > $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); > and, > $newaln=$aln->select_Seqs([1, 3, 5..10,15]); > > But '-seqs' doesnot sound very good, I will prefer '-orders'. > > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, June 18, 2010 2:42 PM > To: Jun Yin > Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Jun, > > It all depends on optimization. I like the named argument version myself. > The current bioperl named parameters implementation requires, in order to > parse out the named parameters, you have to call either the core > _rearrange() method or Lincoln's rearrange() utility for consistency (deals > with all sorts of variants, and Lincoln's allows aliases). Either way is a > small hit, which is fine in most cases, but if the method is called possibly > thousands of times it amplifies accordingly and may become a bottleneck on > speed. > > You could have your cake and eat it too; check if the first argument is an > arrayref and do it it the original way, otherwise use rearrange(). > > BTW, this won't work: > > '-seqs' => (1, 3, 5..10,15), -toggle => "yes" > > The list flattens out into this: > > '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) > > So they don't pair up as you would expect; this is a silent bug, as > rearrange() will happily assign 1 to 'seqs' and toss the rest unless they > are asked for. With and odd number of elements you would see warnings > popping up. > > You'll have to use arrayrefs to get proper name-value pairings: > > '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) > > chris > > On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > >> Hi, Dave, >> >> No problem. I think your suggestion of using >> $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); >> is more reasonable. It is a more BioPerl way of defined parameters. >> >> And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); >> will also be recognized for the simplicity of use. >> >> Cheers, >> Jun Yin >> Ph.D. student in U.C.D. >> >> Bioinformatics Laboratory >> Conway Institute >> University College Dublin >> >> >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, June 18, 2010 10:38 AM >> To: Jun Yin >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Interface of the method >> >> Hi Jun, >> >> >>> In the BioPerl guide, >>> http://www.bioperl.org/wiki/Advanced_BioPerl >>> >>> They say that, Capital word should be used for methods returning >>> objects, >> >> You're absolutely right. My apologies ? thanks for pointing that out. >> >> >>> Thus an array reference >>> [1,3,5..10] seems better than a list (1,3,5..10), >>> the latter will be hard to recognize the other parameters. >> >> >>> >> Aaand, you're right here, too. >> >> Again, sorry about that. It was quite late last night when I was >> replying to your email, and I sure wasn't thinking clearly. >> >> So, please don't mind me, ( carry on, as you were!) and thanks again >> for your work on this. >> >> >> Dave >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> __________ Information from ESET Smart Security, version of virus > signature database 5099 (20100509) __________ >> >> The message was checked by ESET Smart Security. >> >> http://www.eset.com >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 18 14:03:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 13:03:32 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A2741.2080604@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> Message-ID: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > On 06/17/2010 03:12 PM, Chris Fields wrote: >> Emmanuel, >> >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >> >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >> >> http://github.com/cjfields/biome >> > > Hi Chris, > > Yep I've seen it already from one of your email on the Moose list :) > I can try plug my modules to your project, however my code might be > not as evolved as yours, so it could need some improvements and > tuning to run faster and better. > >> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >> >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >> > > Well I don't really know. Let me think about it (between github and > CPAN), I'll also need to read and understand carefully your biome > project. Moreover, as already said in my previous emails, I am not > very ease with Moose right now.... > > Anyway what I can do it to change my code to better fit with actual > implementation of BioPerl 1.6 and send it to the team for later > integration? > I can also send you my Moosified version to have a look? > > Let me know > > Regards > > Emmanuel If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. Let me know. chris From scott at scottcain.net Fri Jun 18 16:55:23 2010 From: scott at scottcain.net (Scott Cain) Date: Fri, 18 Jun 2010 16:55:23 -0400 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: Hi Jay, I was going to go, but I missed the abstract deadline by exactly one month (doh!) so I'm going to skip it. Scott On Friday, June 18, 2010, Jay Hannah wrote: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) > > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From jay at jays.net Fri Jun 18 15:29:32 2010 From: jay at jays.net (Jay Hannah) Date: Fri, 18 Jun 2010 14:29:32 -0500 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4B7EE88D.1020406@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> Message-ID: <4C1BC91C.8070609@jays.net> On 2/19/2010 1:37 PM, Jay Hannah wrote: > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) Oh dear. Am I the only attendee? Scott, George: I heard a rumor you'll be at YAPC. True? Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From arthur11985 at hotmail.com Fri Jun 18 01:07:19 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Fri, 18 Jun 2010 05:07:19 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> , <4C1AE9AE.5030807@gmail.com> Message-ID: Dear All I am using bio-linux, I installed BioPerl-run-1.6.1, and installed through cpan entirely. During installation, where ever a selection is required, I just followed with default setting which is just typing "enter". After that, I tried to call the module by "use Bio::Factory::EMBOSS;" with the script that I forwarded earlier and the terminal echoes "cannot locate Bio/Factory/EMBOSS.pm". Yours sincerely Arthur _________________________________________________________________ Feeling the financial pinch? Check on MSN NZ Money for a hand http://money.msn.co.nz From julia.davison83 at googlemail.com Fri Jun 18 07:22:04 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:22:04 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> Message-ID: <28924983.post@talk.nabble.com> >Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be >located in that "long directory list" for Perl to find it. The files would initially go to my user directory or my downloads (I can't remember which install version did which). When this didn't work I tried moving them to my perl folder, and to applications. There was an install text file. I could try using the directory list in require module? >Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: Have tried both. :-( It *seemed* to be Build that had the most trouble... Thanks! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28924983.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From julia.davison83 at googlemail.com Fri Jun 18 07:25:35 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:25:35 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> References: <28912041.post@talk.nabble.com> <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Message-ID: <28925011.post@talk.nabble.com> sorry - is this in the expat library section of cpan? I've been through all those install methods, and nothing seems to change the problem. thanks. Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28925011.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From rikusia at gmail.com Fri Jun 18 14:05:02 2010 From: rikusia at gmail.com (Rikusia) Date: Fri, 18 Jun 2010 11:05:02 -0700 (PDT) Subject: [Bioperl-l] Finding homologous (fasta files) via blast Message-ID: <28929168.post@talk.nabble.com> Hi everybody. I guess you won't be able to help me, but lets give it a try. I have to write a code for university assignment. I have to find homologous of given sequence with bioperl via blast. I'm not very good at coding and i really appreciate your help. Maybe you can give me few hints? Or you have code already? I'd be thankfull you forever. -- View this message in context: http://old.nabble.com/Finding-homologous-%28fasta-files%29-via-blast-tp28929168p28929168.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From hartzell at alerce.com Fri Jun 18 23:53:55 2010 From: hartzell at alerce.com (George Hartzell) Date: Fri, 18 Jun 2010 20:53:55 -0700 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: <19484.16211.139152.780741@gargle.gargle.HOWL> Jay Hannah writes: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > > > I'm looking forward to another hackathon. :) > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? I'll be there. Arriving Sunday PM. g. From rikusia at gmail.com Sat Jun 19 05:20:58 2010 From: rikusia at gmail.com (Rikusia) Date: Sat, 19 Jun 2010 02:20:58 -0700 (PDT) Subject: [Bioperl-l] NetBlast path. Not found. Message-ID: <28933539.post@talk.nabble.com> I have code like this: #!/usr/bin/perl -w use strict; use warnings; use Bio::SearchIO; my $netblast_dir = $ENV{USERPROFILE} . "\\Desktop\\netblast"; my $blast_report; chdir ($netblast_dir) or die; system ("blastcl3 -p blastn -d nr -i in.fasta -o out.blast"); $blast_report = new Bio::SearchIO ('-format' => 'blast', '-file' => 'out.blast'); while ( my $result = $blast_report->next_result ) { my $hit_num = 0; while( my $hit = $result->next_hit ) { $hit_num++; while( my $hsp = $hit->next_hsp ) { my $hsp_num++; my $hitName = $hit->name; my $percent_id = sprintf ("%.2f", $hsp->percent_identity); my $hspLength = $hsp->hsp_length; my $hspStart = $hsp->start('hit'); my $hspEnd = $hsp->end('hit'); my $numID = $hsp->num_identical; my $numGaps = $hsp->gaps; print "Hit number: $hit_num, hsp number: $hsp_num\n\t$hitName\n" . "\t\tPercent ID: $percent_id\n" . "\t\tLength: $hspLength\n" . "\t\tRange: $hspStart - $hspEnd\n" . "\t\tIdentical residues: $numID\n" . "\t\tGaps: $numGaps\n\n"; } } } print "Done.\n"; I'm using netblast, but still Path to blastall cannot be found and changing windows enviroment variables is not helping. Do you have any ideas how to fix it? -- View this message in context: http://old.nabble.com/NetBlast-path.-Not-found.-tp28933539p28933539.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From awitney at sgul.ac.uk Sat Jun 19 09:38:12 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Sat, 19 Jun 2010 14:38:12 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28924983.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> <28924983.post@talk.nabble.com> Message-ID: <3B84D6D2-44C7-4917-9A2B-C2407FDB8C72@sgul.ac.uk> On 18 Jun 2010, at 12:22, perlcurl wrote: > > > >> Where did you put the files once you downloaded them? Did you run an > install? Bio/Perl.pm needs to be >located in that "long directory list" for > Perl to find it. > > The files would initially go to my user directory or my downloads (I can't > remember which install version did which). When this didn't work I tried > moving them to my perl folder, and to applications. > There was an install text file. > I could try using the directory list in require module? > > >> Also you could try just using the standard Unix methods (CPAN or Build.pl) > of install, see here for details: > Have tried both. :-( It *seemed* to be Build that had the most trouble... ah so you haven't managed to build Bioperl successfully yet? can you give more details of what you have tried and what exactly failed adam From jay at jays.net Mon Jun 21 10:28:22 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 21 Jun 2010 10:28:22 -0400 Subject: [Bioperl-l] bioperl.org is down? Message-ID: s$ telnet bioperl.org 80 Trying 208.94.50.58... telnet: Unable to connect to remote host: Connection refused From s.denaxas at gmail.com Tue Jun 22 03:00:31 2010 From: s.denaxas at gmail.com (Spiros Denaxas) Date: Tue, 22 Jun 2010 08:00:31 +0100 Subject: [Bioperl-l] bioperl.org is down? In-Reply-To: References: Message-ID: Hm, works fine for me here. fruit:$ telnet bioperl.org 80 Trying 208.94.50.58... Connected to bioperl.org. Escape character is '^]'. GET / [...] On Mon, Jun 21, 2010 at 3:28 PM, Jay Hannah wrote: > s$ telnet bioperl.org 80 > Trying 208.94.50.58... > telnet: Unable to connect to remote host: Connection refused > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From vecchi.b at gmail.com Wed Jun 23 08:04:48 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 09:04:48 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: Hi, BioPerl is using Array::Compare which, as of?2009-08-09, depends on Moose. This means that Moose has been a dependency (albeit indirect) for almost a year now. Just thought I should point that out! Cheers, Bruno. 2010/6/18 Chris Fields > > On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > > > On 06/17/2010 03:12 PM, Chris Fields wrote: > >> Emmanuel, > >> > >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. ?But you have two possible options: > >> > >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > >> > >> http://github.com/cjfields/biome > >> > > > > Hi Chris, > > > > Yep I've seen it already from one of your email on the Moose list :) > > I can try plug my modules to your project, however my code might be > > not as evolved as yours, so it could need some improvements and > > tuning to run faster and better. > > > >> This will eventually move into the bioperl github account, and is probably a better fit. ?Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > >> > >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. ?That frees you up to do whatever you want with the code. > >> > > > > Well I don't really know. Let me think about it (between github and > > CPAN), I'll also need to read and understand carefully your biome > > project. Moreover, as already said in my previous emails, I am not > > very ease with Moose right now.... > > > > Anyway what I can do it to change my code to better fit with actual > > implementation of BioPerl 1.6 and send it to the team for later > > integration? > > I can also send you my Moosified version to have a look? > > > > Let me know > > > > Regards > > > > Emmanuel > > If the code works, wouldn't be much work to get it into Biome. ?Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. ?Tests and such are pretty straightforward. ?If needed you can wrap BioPerl objects. > > Let me know. > > chris > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 23 10:16:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 23 Jun 2010 09:16:26 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Bruno, Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). Our dependency load is already too high as it is. I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). Stevan Little himself posted on this last year: http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. Moose may be part of the answer, and could act as a viable transition to perl 6. I have already initiated that effort with biome, which anyone is more than welcome to participate in. Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). chris On Jun 23, 2010, at 7:04 AM, Bruno Vecchi wrote: > Hi, > > BioPerl is using Array::Compare which, as of 2009-08-09, depends on > Moose. This means that Moose has been a dependency (albeit indirect) > for almost a year now. Just thought I should point that out! > > Cheers, > > Bruno. > > 2010/6/18 Chris Fields >> >> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: >> >>> On 06/17/2010 03:12 PM, Chris Fields wrote: >>>> Emmanuel, >>>> >>>> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >>>> >>>> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >>>> >>>> http://github.com/cjfields/biome >>>> >>> >>> Hi Chris, >>> >>> Yep I've seen it already from one of your email on the Moose list :) >>> I can try plug my modules to your project, however my code might be >>> not as evolved as yours, so it could need some improvements and >>> tuning to run faster and better. >>> >>>> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >>>> >>>> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >>>> >>> >>> Well I don't really know. Let me think about it (between github and >>> CPAN), I'll also need to read and understand carefully your biome >>> project. Moreover, as already said in my previous emails, I am not >>> very ease with Moose right now.... >>> >>> Anyway what I can do it to change my code to better fit with actual >>> implementation of BioPerl 1.6 and send it to the team for later >>> integration? >>> I can also send you my Moosified version to have a look? >>> >>> Let me know >>> >>> Regards >>> >>> Emmanuel >> >> If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. >> >> Let me know. >> >> chris >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l From vecchi.b at gmail.com Wed Jun 23 10:48:43 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 11:48:43 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Message-ID: Chris, > Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. ?Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. Good catch, hadn't considered it could be a soft dependency. I stand corrected, sorry about the confusion. :) > I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). ?Our dependency load is already too high as it is. ?I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). ?Stevan Little himself posted on this last year: > > http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html > > Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). ?That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. ?Moose may be part of the answer, and could act as a viable transition to perl 6. ?I have already initiated that effort with biome, which anyone is more than welcome to participate in. Oh, I agree completely. I wasn't making any judgement call in my previous message; just thought I should point that Moose was already a dependency that had slipped in, probably without people noticing since Array::Compare didn't originally depend on Moose. > Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. ?I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). Also agree; in fact, I thought about this myself a year or so ago when I wrote Bio::Protease. I initially considered proposing it for inclusion here, but ended up releasing it as a standalone module to the CPAN. Partly because it was factored out of a project that had Moose all over it, but also because there really weren't any compelling reasons to have it bundled with BioPerl: it doesn't depend on it, and it would have added more unwanted bloat to BioPerl. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. Cheers, Bruno. From abhishek.vit at gmail.com Thu Jun 24 10:20:22 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 10:20:22 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function Message-ID: Hi All I may be hitting a problem which probably hints at my grip of the language. I am trying to store Bio::SeqIO object in a hash. I have creates couple of Bio::SeqIO objects in a method and storing them as a hash reference. The goal is to use them in another subroutine for writing out data to each file. The script is trying to bin data into different files. Any idea how I could achieve creating file handles thru "Bio::SeqIO" object in one routine and pass them to another for writing. Thanks! -Abhi foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $indexes->{$lane}->{$bin}->{'file_handle'}=$out; } } From wkretzsch at gmail.com Thu Jun 24 11:24:34 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 11:24:34 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi, My understanding is that you are using a SeqIO object in order to create correctly parsed output files. In that case for each SeqIO object, open it like this: for (0..9){ $file = "my_file_$_"; push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); } simply make $file correspond to the file (or bin) you want to put your data into. then pass @outseqIOs to your other subroutine and once you've created a seq object, write it to the bin you want it to go to (in this case file number "7"): $outseqIOs[7]->write_seq($seq); I haven't tested the code, but that's the kind of thing I think you're looking for. For more info, look at the howto: http://www.bioperl.org/wiki/HOWTO:SeqIO Warren On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap wrote: > Hi All > > I may be hitting a problem which probably hints at my grip of the language. > I am trying to store Bio::SeqIO object in a hash. I have creates couple of > Bio::SeqIO objects in a method and storing them as a hash reference. The > goal is to use them in another subroutine for writing out data to each file. > The script is trying to bin data into different files. > > > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" object > in one routine and pass them to another for writing. > > > Thanks! > -Abhi > > foreach my $bin (keys %{ $indexes->{$lane} }) > ?{ > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > ?my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > ?} > } > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From abhishek.vit at gmail.com Thu Jun 24 12:19:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:19:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Warren Thanks for your quick reply. I am doing something very close to what you have suggested but I see errors which might be due to some silly mistake I am making. The difference is instead of array I am using a hash to help me extract file names by key value later. I am writing data like this. my $file_handle = $bins{$bin_name}; $file_handle->write_seq($data); Gives me an error Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. -Abhi On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar wrote: > Hi, > My understanding is that you are using a SeqIO object in order to > create correctly parsed output files. > > In that case for each SeqIO object, open it like this: > > for (0..9){ > $file = "my_file_$_"; > push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); > } > > simply make $file correspond to the file (or bin) you want to put your > data into. > > then pass @outseqIOs to your other subroutine and once you've created > a seq object, write it to the bin you want it to go to (in this case > file number "7"): > > $outseqIOs[7]->write_seq($seq); > > I haven't tested the code, but that's the kind of thing I think you're > looking for. For more info, look at the howto: > http://www.bioperl.org/wiki/HOWTO:SeqIO > > Warren > > On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > wrote: > > Hi All > > > > I may be hitting a problem which probably hints at my grip of the > language. > > I am trying to store Bio::SeqIO object in a hash. I have creates couple > of > > Bio::SeqIO objects in a method and storing them as a hash reference. The > > goal is to use them in another subroutine for writing out data to each > file. > > The script is trying to bin data into different files. > > > > > > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > object > > in one routine and pass them to another for writing. > > > > > > Thanks! > > -Abhi > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > } > > } > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > From wkretzsch at gmail.com Thu Jun 24 12:22:32 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 12:22:32 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Where are you getting the filehandles from? That is, How are you opening them? Can you show me the code? Warren On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap wrote: > Dear Warren > Thanks for your quick reply. ?I am doing something very close to what you > have suggested but I see errors which might be due to some silly mistake I > am making. The difference is instead of array I am using a hash to help me > extract file names by key value later. > I am writing data like this. > my $file_handle = $bins{$bin_name}; > ?$file_handle->write_seq($data); > Gives me an error > Can't call method "write_seq" on an undefined value at > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > 139, line 5. > -Abhi > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > wrote: >> >> Hi, >> My understanding is that you are using a SeqIO object in order to >> create correctly parsed output files. >> >> In that case for each SeqIO object, open it like this: >> >> for (0..9){ >> $file = "my_file_$_"; >> push @outseqIOs, Bio::SeqIO->new(-file ? => ">$file", -format => $format >> ); >> } >> >> simply make $file correspond to the file (or bin) you want to put your >> data into. >> >> then pass @outseqIOs to your other subroutine and once you've created >> a seq object, write it to the bin you want it to go to (in this case >> file number "7"): >> >> $outseqIOs[7]->write_seq($seq); >> >> I haven't tested the code, but that's the kind of thing I think you're >> looking for. For more info, look at the howto: >> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >> Warren >> >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> wrote: >> > Hi All >> > >> > I may be hitting a problem which probably hints at my grip of the >> > language. >> > I am trying to store Bio::SeqIO object in a hash. I have creates couple >> > of >> > Bio::SeqIO objects in a method and storing them as a hash reference. The >> > goal is to use them in another subroutine for writing out data to each >> > file. >> > The script is trying to bin data into different files. >> > >> > >> > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" >> > object >> > in one routine and pass them to another for writing. >> > >> > >> > Thanks! >> > -Abhi >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > ?{ >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > ?my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> > ?} >> > } >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > From abhishek.vit at gmail.com Thu Jun 24 12:26:02 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:26:02 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Sure. Here is the full subroutine where I am opening the file handle and storing them Thanks for your help, -A sub createBins { my $SUB ='createBins'; my $PWD = `pwd`; my $outpath = shift @_; my $lane = shift @_ ; foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $bins{$bin}=$out; } } On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar wrote: > Where are you getting the filehandles from? That is, How are you > opening them? Can you show me the code? > > Warren > > On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > wrote: > > Dear Warren > > Thanks for your quick reply. I am doing something very close to what you > > have suggested but I see errors which might be due to some silly mistake > I > > am making. The difference is instead of array I am using a hash to help > me > > extract file names by key value later. > > I am writing data like this. > > my $file_handle = $bins{$bin_name}; > > $file_handle->write_seq($data); > > Gives me an error > > Can't call method "write_seq" on an undefined value at > > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > > 139, line 5. > > -Abhi > > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > wrote: > >> > >> Hi, > >> My understanding is that you are using a SeqIO object in order to > >> create correctly parsed output files. > >> > >> In that case for each SeqIO object, open it like this: > >> > >> for (0..9){ > >> $file = "my_file_$_"; > >> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format > >> ); > >> } > >> > >> simply make $file correspond to the file (or bin) you want to put your > >> data into. > >> > >> then pass @outseqIOs to your other subroutine and once you've created > >> a seq object, write it to the bin you want it to go to (in this case > >> file number "7"): > >> > >> $outseqIOs[7]->write_seq($seq); > >> > >> I haven't tested the code, but that's the kind of thing I think you're > >> looking for. For more info, look at the howto: > >> http://www.bioperl.org/wiki/HOWTO:SeqIO > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >> wrote: > >> > Hi All > >> > > >> > I may be hitting a problem which probably hints at my grip of the > >> > language. > >> > I am trying to store Bio::SeqIO object in a hash. I have creates > couple > >> > of > >> > Bio::SeqIO objects in a method and storing them as a hash reference. > The > >> > goal is to use them in another subroutine for writing out data to each > >> > file. > >> > The script is trying to bin data into different files. > >> > > >> > > >> > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >> > object > >> > in one routine and pass them to another for writing. > >> > > >> > > >> > Thanks! > >> > -Abhi > >> > > >> > foreach my $bin (keys %{ $indexes->{$lane} }) > >> > { > >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >> > my $path="$outpath".'/'."$sample_name"; > >> > mkpath( $path, { verbose => 1, mode => 0711 }); > >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >> > ">$outpath/$sample_name/$fastQFile"); > >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >> > } > >> > } > >> > _______________________________________________ > >> > Bioperl-l mailing list > >> > Bioperl-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > > > > > From cjfields at illinois.edu Thu Jun 24 12:52:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 11:52:48 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Are you sure you haven't hit the max limit for open filehandles for your OS? Attempting to open a filehandle when you exceed this limit simply returns undef, which might explain the error. On my Mac: cjfields4:~ cjfields$ ulimit -n 256 On my ubuntu box: cjfields at pyrimidine:~$ ulimit -n 1024 I think Windows used to be much less, not sure now. You might not be able to reset this on some systems. chris On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > Sure. Here is the full subroutine where I am opening the file handle and > storing them > > Thanks for your help, > -A > > sub createBins { > my $SUB ='createBins'; > my $PWD = `pwd`; > my $outpath = shift @_; > my $lane = shift @_ ; > > foreach my $bin (keys %{ $indexes->{$lane} }) > { > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $bins{$bin}=$out; > } > } > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar > wrote: > >> Where are you getting the filehandles from? That is, How are you >> opening them? Can you show me the code? >> >> Warren >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> wrote: >>> Dear Warren >>> Thanks for your quick reply. I am doing something very close to what you >>> have suggested but I see errors which might be due to some silly mistake >> I >>> am making. The difference is instead of array I am using a hash to help >> me >>> extract file names by key value later. >>> I am writing data like this. >>> my $file_handle = $bins{$bin_name}; >>> $file_handle->write_seq($data); >>> Gives me an error >>> Can't call method "write_seq" on an undefined value at >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line >>> 139, line 5. >>> -Abhi >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>> wrote: >>>> >>>> Hi, >>>> My understanding is that you are using a SeqIO object in order to >>>> create correctly parsed output files. >>>> >>>> In that case for each SeqIO object, open it like this: >>>> >>>> for (0..9){ >>>> $file = "my_file_$_"; >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format >>>> ); >>>> } >>>> >>>> simply make $file correspond to the file (or bin) you want to put your >>>> data into. >>>> >>>> then pass @outseqIOs to your other subroutine and once you've created >>>> a seq object, write it to the bin you want it to go to (in this case >>>> file number "7"): >>>> >>>> $outseqIOs[7]->write_seq($seq); >>>> >>>> I haven't tested the code, but that's the kind of thing I think you're >>>> looking for. For more info, look at the howto: >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>> >>>> Warren >>>> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>> wrote: >>>>> Hi All >>>>> >>>>> I may be hitting a problem which probably hints at my grip of the >>>>> language. >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> couple >>>>> of >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> The >>>>> goal is to use them in another subroutine for writing out data to each >>>>> file. >>>>> The script is trying to bin data into different files. >>>>> >>>>> >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" >>>>> object >>>>> in one routine and pass them to another for writing. >>>>> >>>>> >>>>> Thanks! >>>>> -Abhi >>>>> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>> { >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>> my $path="$outpath".'/'."$sample_name"; >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>> ">$outpath/$sample_name/$fastQFile"); >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>> } >>>>> } >>>>> _______________________________________________ >>>>> Bioperl-l mailing list >>>>> Bioperl-l at lists.open-bio.org >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>> >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 12:55:58 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:55:58 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi Chris Thanks for joining this conversation. I dont think max limit of file handles is a problem. I am opening about 12 in this case. [apratap at grima]$ ulimit -n 4096 -A On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > Are you sure you haven't hit the max limit for open filehandles for your > OS? Attempting to open a filehandle when you exceed this limit simply > returns undef, which might explain the error. On my Mac: > > cjfields4:~ cjfields$ ulimit -n > 256 > > On my ubuntu box: > > cjfields at pyrimidine:~$ ulimit -n > 1024 > > I think Windows used to be much less, not sure now. You might not be able > to reset this on some systems. > > chris > > On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > > Sure. Here is the full subroutine where I am opening the file handle and > > storing them > > > > Thanks for your help, > > -A > > > > sub createBins { > > my $SUB ='createBins'; > > my $PWD = `pwd`; > > my $outpath = shift @_; > > my $lane = shift @_ ; > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $bins{$bin}=$out; > > } > > } > > > > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > wkretzsch at gmail.com > >> wrote: > > > >> Where are you getting the filehandles from? That is, How are you > >> opening them? Can you show me the code? > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >> wrote: > >>> Dear Warren > >>> Thanks for your quick reply. I am doing something very close to what > you > >>> have suggested but I see errors which might be due to some silly > mistake > >> I > >>> am making. The difference is instead of array I am using a hash to help > >> me > >>> extract file names by key value later. > >>> I am writing data like this. > >>> my $file_handle = $bins{$bin_name}; > >>> $file_handle->write_seq($data); > >>> Gives me an error > >>> Can't call method "write_seq" on an undefined value at > >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line > >>> 139, line 5. > >>> -Abhi > >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>> wrote: > >>>> > >>>> Hi, > >>>> My understanding is that you are using a SeqIO object in order to > >>>> create correctly parsed output files. > >>>> > >>>> In that case for each SeqIO object, open it like this: > >>>> > >>>> for (0..9){ > >>>> $file = "my_file_$_"; > >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > $format > >>>> ); > >>>> } > >>>> > >>>> simply make $file correspond to the file (or bin) you want to put your > >>>> data into. > >>>> > >>>> then pass @outseqIOs to your other subroutine and once you've created > >>>> a seq object, write it to the bin you want it to go to (in this case > >>>> file number "7"): > >>>> > >>>> $outseqIOs[7]->write_seq($seq); > >>>> > >>>> I haven't tested the code, but that's the kind of thing I think you're > >>>> looking for. For more info, look at the howto: > >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>> > >>>> Warren > >>>> > >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>> wrote: > >>>>> Hi All > >>>>> > >>>>> I may be hitting a problem which probably hints at my grip of the > >>>>> language. > >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >> couple > >>>>> of > >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >> The > >>>>> goal is to use them in another subroutine for writing out data to > each > >>>>> file. > >>>>> The script is trying to bin data into different files. > >>>>> > >>>>> > >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >>>>> object > >>>>> in one routine and pass them to another for writing. > >>>>> > >>>>> > >>>>> Thanks! > >>>>> -Abhi > >>>>> > >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>> { > >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>> my $path="$outpath".'/'."$sample_name"; > >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>> } > >>>>> } > >>>>> _______________________________________________ > >>>>> Bioperl-l mailing list > >>>>> Bioperl-l at lists.open-bio.org > >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>> > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 13:03:00 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 13:03:00 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: After a bit more error checking, I was able to resolve the previous error Resolved Error : Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. This happened due to null value returned by one of the hash. However I am hitting a new issue. New Error : Can't call method "isa" on unblessed reference at /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, line 49 -A On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > Hi Chris > > Thanks for joining this conversation. I dont think max limit of file > handles is a problem. I am opening about 12 in this case. > > [apratap at grima]$ ulimit -n > 4096 > > -A > > > On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> Are you sure you haven't hit the max limit for open filehandles for your >> OS? Attempting to open a filehandle when you exceed this limit simply >> returns undef, which might explain the error. On my Mac: >> >> cjfields4:~ cjfields$ ulimit -n >> 256 >> >> On my ubuntu box: >> >> cjfields at pyrimidine:~$ ulimit -n >> 1024 >> >> I think Windows used to be much less, not sure now. You might not be able >> to reset this on some systems. >> >> chris >> >> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >> >> > Sure. Here is the full subroutine where I am opening the file handle and >> > storing them >> > >> > Thanks for your help, >> > -A >> > >> > sub createBins { >> > my $SUB ='createBins'; >> > my $PWD = `pwd`; >> > my $outpath = shift @_; >> > my $lane = shift @_ ; >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > { >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $bins{$bin}=$out; >> > } >> > } >> > >> > >> > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >> wkretzsch at gmail.com >> >> wrote: >> > >> >> Where are you getting the filehandles from? That is, How are you >> >> opening them? Can you show me the code? >> >> >> >> Warren >> >> >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> >> wrote: >> >>> Dear Warren >> >>> Thanks for your quick reply. I am doing something very close to what >> you >> >>> have suggested but I see errors which might be due to some silly >> mistake >> >> I >> >>> am making. The difference is instead of array I am using a hash to >> help >> >> me >> >>> extract file names by key value later. >> >>> I am writing data like this. >> >>> my $file_handle = $bins{$bin_name}; >> >>> $file_handle->write_seq($data); >> >>> Gives me an error >> >>> Can't call method "write_seq" on an undefined value at >> >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >> line >> >>> 139, line 5. >> >>> -Abhi >> >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >> >>> wrote: >> >>>> >> >>>> Hi, >> >>>> My understanding is that you are using a SeqIO object in order to >> >>>> create correctly parsed output files. >> >>>> >> >>>> In that case for each SeqIO object, open it like this: >> >>>> >> >>>> for (0..9){ >> >>>> $file = "my_file_$_"; >> >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >> $format >> >>>> ); >> >>>> } >> >>>> >> >>>> simply make $file correspond to the file (or bin) you want to put >> your >> >>>> data into. >> >>>> >> >>>> then pass @outseqIOs to your other subroutine and once you've created >> >>>> a seq object, write it to the bin you want it to go to (in this case >> >>>> file number "7"): >> >>>> >> >>>> $outseqIOs[7]->write_seq($seq); >> >>>> >> >>>> I haven't tested the code, but that's the kind of thing I think >> you're >> >>>> looking for. For more info, look at the howto: >> >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >>>> >> >>>> Warren >> >>>> >> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> >>>> wrote: >> >>>>> Hi All >> >>>>> >> >>>>> I may be hitting a problem which probably hints at my grip of the >> >>>>> language. >> >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> >> couple >> >>>>> of >> >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> >> The >> >>>>> goal is to use them in another subroutine for writing out data to >> each >> >>>>> file. >> >>>>> The script is trying to bin data into different files. >> >>>>> >> >>>>> >> >>>>> Any idea how I could achieve creating file handles thru >> "Bio::SeqIO" >> >>>>> object >> >>>>> in one routine and pass them to another for writing. >> >>>>> >> >>>>> >> >>>>> Thanks! >> >>>>> -Abhi >> >>>>> >> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >> >>>>> { >> >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> >>>>> my $path="$outpath".'/'."$sample_name"; >> >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >> >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> >>>>> ">$outpath/$sample_name/$fastQFile"); >> >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> >>>>> } >> >>>>> } >> >>>>> _______________________________________________ >> >>>>> Bioperl-l mailing list >> >>>>> Bioperl-l at lists.open-bio.org >> >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >>>>> >> >>> >> >>> >> >> >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > From jay at jays.net Thu Jun 24 13:10:21 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 24 Jun 2010 13:10:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: On Jun 24, 2010, at 1:03 PM, Abhishek Pratap wrote: > However I am hitting a new issue. You might also seek help via IRC: http://bioperl.org/wiki/IRC (I have to get on a plane in 20 minutes, so the channel might be quiet.) I, for one, don't attempt support via email due to chronic 20-40 minute posting delays. Jay Hannah email defamation league http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From cjfields at illinois.edu Thu Jun 24 13:19:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 12:19:21 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. chris On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > After a bit more error checking, I was able to resolve the previous error > > Resolved Error : Can't call method "write_seq" on an undefined value > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line 139, line 5. > This happened due to null value returned by one of the hash. > > However I am hitting a new issue. > New Error : Can't call method "isa" on unblessed reference at > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > line 49 > > > -A > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > >> Hi Chris >> >> Thanks for joining this conversation. I dont think max limit of file >> handles is a problem. I am opening about 12 in this case. >> >> [apratap at grima]$ ulimit -n >> 4096 >> >> -A >> >> >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: >> >>> Are you sure you haven't hit the max limit for open filehandles for your >>> OS? Attempting to open a filehandle when you exceed this limit simply >>> returns undef, which might explain the error. On my Mac: >>> >>> cjfields4:~ cjfields$ ulimit -n >>> 256 >>> >>> On my ubuntu box: >>> >>> cjfields at pyrimidine:~$ ulimit -n >>> 1024 >>> >>> I think Windows used to be much less, not sure now. You might not be able >>> to reset this on some systems. >>> >>> chris >>> >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >>> >>>> Sure. Here is the full subroutine where I am opening the file handle and >>>> storing them >>>> >>>> Thanks for your help, >>>> -A >>>> >>>> sub createBins { >>>> my $SUB ='createBins'; >>>> my $PWD = `pwd`; >>>> my $outpath = shift @_; >>>> my $lane = shift @_ ; >>>> >>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>> { >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>> my $path="$outpath".'/'."$sample_name"; >>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>> ">$outpath/$sample_name/$fastQFile"); >>>> $bins{$bin}=$out; >>>> } >>>> } >>>> >>>> >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >>> wkretzsch at gmail.com >>>>> wrote: >>>> >>>>> Where are you getting the filehandles from? That is, How are you >>>>> opening them? Can you show me the code? >>>>> >>>>> Warren >>>>> >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >>>>> wrote: >>>>>> Dear Warren >>>>>> Thanks for your quick reply. I am doing something very close to what >>> you >>>>>> have suggested but I see errors which might be due to some silly >>> mistake >>>>> I >>>>>> am making. The difference is instead of array I am using a hash to >>> help >>>>> me >>>>>> extract file names by key value later. >>>>>> I am writing data like this. >>>>>> my $file_handle = $bins{$bin_name}; >>>>>> $file_handle->write_seq($data); >>>>>> Gives me an error >>>>>> Can't call method "write_seq" on an undefined value at >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >>> line >>>>>> 139, line 5. >>>>>> -Abhi >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>>>>> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> My understanding is that you are using a SeqIO object in order to >>>>>>> create correctly parsed output files. >>>>>>> >>>>>>> In that case for each SeqIO object, open it like this: >>>>>>> >>>>>>> for (0..9){ >>>>>>> $file = "my_file_$_"; >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >>> $format >>>>>>> ); >>>>>>> } >>>>>>> >>>>>>> simply make $file correspond to the file (or bin) you want to put >>> your >>>>>>> data into. >>>>>>> >>>>>>> then pass @outseqIOs to your other subroutine and once you've created >>>>>>> a seq object, write it to the bin you want it to go to (in this case >>>>>>> file number "7"): >>>>>>> >>>>>>> $outseqIOs[7]->write_seq($seq); >>>>>>> >>>>>>> I haven't tested the code, but that's the kind of thing I think >>> you're >>>>>>> looking for. For more info, look at the howto: >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>>>>> >>>>>>> Warren >>>>>>> >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>>>>> wrote: >>>>>>>> Hi All >>>>>>>> >>>>>>>> I may be hitting a problem which probably hints at my grip of the >>>>>>>> language. >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >>>>> couple >>>>>>>> of >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >>>>> The >>>>>>>> goal is to use them in another subroutine for writing out data to >>> each >>>>>>>> file. >>>>>>>> The script is trying to bin data into different files. >>>>>>>> >>>>>>>> >>>>>>>> Any idea how I could achieve creating file handles thru >>> "Bio::SeqIO" >>>>>>>> object >>>>>>>> in one routine and pass them to another for writing. >>>>>>>> >>>>>>>> >>>>>>>> Thanks! >>>>>>>> -Abhi >>>>>>>> >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>>>>> { >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>>>>> my $path="$outpath".'/'."$sample_name"; >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>>>>> ">$outpath/$sample_name/$fastQFile"); >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>>>>> } >>>>>>>> } >>>>>>>> _______________________________________________ >>>>>>>> Bioperl-l mailing list >>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>> >>>>>> >>>>>> >>>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 14:09:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:09:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Chris I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. Thanks! -Abhi On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line > 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for > your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be > able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to > what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From cjfields at illinois.edu Thu Jun 24 14:14:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:14:41 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> The best way to get that is by using next_seq(), not next_dataset. It will not be as fast, but should suffice. At the moment we don't have plans on supporting output for hash refs frm next_dataset until we can standardize upon a way for describing such data from various parsers. chris On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > Dear Chris > > I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. > > Thanks! > -Abhi > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've created > >>>>>>> a seq object, write it to the bin you want it to go to (in this case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 14:28:21 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:28:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: Thanks everyone for your input. I have the script working. Chris : Not sure what is the rationale, write_seq and next_seq has different key names in the hash ref( eg . 'display_id' and '-id') . This could possibly cause conflicts in future development. Also just wondering why currently only Bio:SeqIO:Quality object works with write_seq. -Abhi On Thu, Jun 24, 2010 at 2:14 PM, Chris Fields wrote: > The best way to get that is by using next_seq(), not next_dataset. It will > not be as fast, but should suffice. > > At the moment we don't have plans on supporting output for hash refs frm > next_dataset until we can standardize upon a way for describing such data > from various parsers. > > chris > > On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > > > Dear Chris > > > > I am indeed passing hash ref via next_dataset. Any slick way to convert > the ref to Bio::Seq::Quality format. > > > > Thanks! > > -Abhi > > > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields > wrote: > > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > > > chris > > > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > > > After a bit more error checking, I was able to resolve the previous > error > > > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > > line 139, line 5. > > > This happened due to null value returned by one of the hash. > > > > > > However I am hitting a new issue. > > > New Error : Can't call method "isa" on unblessed reference at > > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pmline 126, > > > line 49 > > > > > > > > > -A > > > > > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > > > >> Hi Chris > > >> > > >> Thanks for joining this conversation. I dont think max limit of file > > >> handles is a problem. I am opening about 12 in this case. > > >> > > >> [apratap at grima]$ ulimit -n > > >> 4096 > > >> > > >> -A > > >> > > >> > > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > > >> > > >>> Are you sure you haven't hit the max limit for open filehandles for > your > > >>> OS? Attempting to open a filehandle when you exceed this limit > simply > > >>> returns undef, which might explain the error. On my Mac: > > >>> > > >>> cjfields4:~ cjfields$ ulimit -n > > >>> 256 > > >>> > > >>> On my ubuntu box: > > >>> > > >>> cjfields at pyrimidine:~$ ulimit -n > > >>> 1024 > > >>> > > >>> I think Windows used to be much less, not sure now. You might not be > able > > >>> to reset this on some systems. > > >>> > > >>> chris > > >>> > > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > >>> > > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > > >>>> storing them > > >>>> > > >>>> Thanks for your help, > > >>>> -A > > >>>> > > >>>> sub createBins { > > >>>> my $SUB ='createBins'; > > >>>> my $PWD = `pwd`; > > >>>> my $outpath = shift @_; > > >>>> my $lane = shift @_ ; > > >>>> > > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>> { > > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>> my $path="$outpath".'/'."$sample_name"; > > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > >>>> ">$outpath/$sample_name/$fastQFile"); > > >>>> $bins{$bin}=$out; > > >>>> } > > >>>> } > > >>>> > > >>>> > > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > > >>> wkretzsch at gmail.com > > >>>>> wrote: > > >>>> > > >>>>> Where are you getting the filehandles from? That is, How are you > > >>>>> opening them? Can you show me the code? > > >>>>> > > >>>>> Warren > > >>>>> > > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > > >>>>> wrote: > > >>>>>> Dear Warren > > >>>>>> Thanks for your quick reply. I am doing something very close to > what > > >>> you > > >>>>>> have suggested but I see errors which might be due to some silly > > >>> mistake > > >>>>> I > > >>>>>> am making. The difference is instead of array I am using a hash to > > >>> help > > >>>>> me > > >>>>>> extract file names by key value later. > > >>>>>> I am writing data like this. > > >>>>>> my $file_handle = $bins{$bin_name}; > > >>>>>> $file_handle->write_seq($data); > > >>>>>> Gives me an error > > >>>>>> Can't call method "write_seq" on an undefined value at > > >>>>>> > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > >>> line > > >>>>>> 139, line 5. > > >>>>>> -Abhi > > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > >>>>>> wrote: > > >>>>>>> > > >>>>>>> Hi, > > >>>>>>> My understanding is that you are using a SeqIO object in order to > > >>>>>>> create correctly parsed output files. > > >>>>>>> > > >>>>>>> In that case for each SeqIO object, open it like this: > > >>>>>>> > > >>>>>>> for (0..9){ > > >>>>>>> $file = "my_file_$_"; > > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > > >>> $format > > >>>>>>> ); > > >>>>>>> } > > >>>>>>> > > >>>>>>> simply make $file correspond to the file (or bin) you want to put > > >>> your > > >>>>>>> data into. > > >>>>>>> > > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > > >>>>>>> file number "7"): > > >>>>>>> > > >>>>>>> $outseqIOs[7]->write_seq($seq); > > >>>>>>> > > >>>>>>> I haven't tested the code, but that's the kind of thing I think > > >>> you're > > >>>>>>> looking for. For more info, look at the howto: > > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > > >>>>>>> > > >>>>>>> Warren > > >>>>>>> > > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > > >>>>>>> wrote: > > >>>>>>>> Hi All > > >>>>>>>> > > >>>>>>>> I may be hitting a problem which probably hints at my grip of > the > > >>>>>>>> language. > > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > > >>>>> couple > > >>>>>>>> of > > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > > >>>>> The > > >>>>>>>> goal is to use them in another subroutine for writing out data > to > > >>> each > > >>>>>>>> file. > > >>>>>>>> The script is trying to bin data into different files. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Any idea how I could achieve creating file handles thru > > >>> "Bio::SeqIO" > > >>>>>>>> object > > >>>>>>>> in one routine and pass them to another for writing. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Thanks! > > >>>>>>>> -Abhi > > >>>>>>>> > > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>>>>>> { > > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file > => > > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > >>>>>>>> } > > >>>>>>>> } > > >>>>>>>> _______________________________________________ > > >>>>>>>> Bioperl-l mailing list > > >>>>>>>> Bioperl-l at lists.open-bio.org > > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>>>>>>> > > >>>>>> > > >>>>>> > > >>>>> > > >>>> _______________________________________________ > > >>>> Bioperl-l mailing list > > >>>> Bioperl-l at lists.open-bio.org > > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>> > > >>> > > >> > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > > > From cjfields at illinois.edu Thu Jun 24 14:47:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:47:26 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: <678DF936-84D0-4305-B240-84B73264A25A@illinois.edu> On Jun 24, 2010, at 1:28 PM, Abhishek Pratap wrote: > Thanks everyone for your input. I have the script working. > > Chris : Not sure what is the rationale, write_seq and next_seq has different > key names in the hash ref( eg . 'display_id' and '-id') . This could > possibly cause conflicts in future development. The '-id' constructor argument (which is terribly non-specific) defaults to setting the display_id, as this is the most commonly used one. Frankly, if it were up to me I would either die/warn with the -id parameter ('Error: Use a more specific ID type; defaulting to display_id') and defer as is, but that breaks API at the moment. This behavior is also the default in the older FASTQ parser as well as others (FASTA I believe), so it is retained for consistency. > Also just wondering why > currently only Bio:SeqIO:Quality object works with write_seq. For FASTQ format, that would be the only one that would make sense (why output something with no quality information). Unless I'm missing something, that's a feature, not a bug. > -Abhi chris From cjfields at illinois.edu Fri Jun 25 12:44:31 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 11:44:31 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray Message-ID: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> All, We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. chris From cjfields at illinois.edu Fri Jun 25 14:38:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 13:38:24 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> An update to this: I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. chris On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > All, > > We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. > > I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 15:39:36 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 14:39:36 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> Message-ID: <10B48011-6C9E-419A-A3FE-18A7B688A264@illinois.edu> Marian's code has been moved into the github Bio-Microarray repo (we can rename that if needed). Bio::Expression modules have been moved into bioperl-microarray for the time being, though I would like to allow use of that namespace for others if needed. Bio::Expression and Bio::Microarray have been removed on a branch of bioperl-live, all tests pass, so it just needs merging. chris On Jun 25, 2010, at 1:38 PM, Chris Fields wrote: > An update to this: > > I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. > > If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. > > chris > > On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > >> All, >> >> We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. >> >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. >> >> If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 16:31:04 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 15:31:04 -0500 Subject: [Bioperl-l] version() vs seq_version() Message-ID: Looking at bug 3095: http://bugzilla.open-bio.org/show_bug.cgi?id=3095 As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? chris From hlapp at drycafe.net Sat Jun 26 20:32:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:32:46 -0700 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > I also suggest we eventually do the same for the PhyloNetwork > modules down the line, and that we steer users who want to submit > new publication-focused bioperl-reliant code into their own CPAN > distributions. That makes sense. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From hlapp at drycafe.net Sat Jun 26 20:36:17 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:36:17 -0700 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: References: Message-ID: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Versioning of a sequence database entry and of the sequence itself need not be the same thing. Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. -hilmar On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > Looking at bug 3095: > > http://bugzilla.open-bio.org/show_bug.cgi?id=3095 > > As indicated there seems to be some redundancy between > Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several > formats (asciitree, genbank, embl, bsml, etc) all call > seq_version(), whereas others use version() if at all. My guess is > the SV line from EMBL, but shouldn't using version() handle this? > > Just as an experiment, I actually got seq_version to delegate to > version() and all tests passed, so maybe this should just delegate > or alias? > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 26 21:26:10 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 26 Jun 2010 20:26:10 -0500 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> References: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Message-ID: <0F532CB7-9195-4226-B76C-3BC8767BA546@illinois.edu> I think, as long as this is clarified for the sake of documentation that would suffice. I'm hazarding a guess that Bio::Seq::version() would be the seq-specific one, whereas Bio::Seq::RichSeq::seq_version() is the seq record (e.g. database entry specific) one. chris On Jun 26, 2010, at 7:36 PM, Hilmar Lapp wrote: > Versioning of a sequence database entry and of the sequence itself need not be the same thing. > > Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. > > -hilmar > > On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > >> Looking at bug 3095: >> >> http://bugzilla.open-bio.org/show_bug.cgi?id=3095 >> >> As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? >> >> Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > From buiduyminh at gmail.com Mon Jun 28 09:15:14 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:15:14 -0400 Subject: [Bioperl-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language. From JSahl at som.umaryland.edu Mon Jun 28 10:04:06 2010 From: JSahl at som.umaryland.edu (Sahl, Jason) Date: Mon, 28 Jun 2010 10:04:06 -0400 Subject: [Bioperl-l] maf write Message-ID: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Hi. I'm trying to write out an alignment in the maf format and I get this error: ------------- EXCEPTION: Bio::Root::NotImplemented ------------- MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by package Bio::AlignIO::maf. This is not your fault - author of Bio::AlignIO::maf should be blamed! I'm using Perl 5.8.8. Anyone know if there are plans to implement write_aln for maf files in the near future? Or does anyone have an easy work around? thank you, Jason Sahl From jovel_juan at hotmail.com Mon Jun 28 13:19:23 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Mon, 28 Jun 2010 17:19:23 +0000 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hello Everybody! I generally use SearchIO to parse my blast reports. To extract hit name, I do: ... while (my $hsp = $hit->next_hsp){ ... my $hit_name = $hit -> name(); ... } It usually gives me something like: ref|NC_006884.1| How can I get ALL the information contained in the name line of that hit?, for example: >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome THANKS IN ADVANCE! JUAN _________________________________________________________________ Connect to the next generation of MSN Messenger? http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline From cjfields at illinois.edu Mon Jun 28 13:28:38 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 28 Jun 2010 12:28:38 -0500 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: <62E8D186-9EA5-4C08-AFBF-8316F5C1A78A@illinois.edu> $hit->description, I believe. chris On Jun 28, 2010, at 12:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, for example: > >> gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From shalabh.sharma7 at gmail.com Mon Jun 28 13:42:41 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Mon, 28 Jun 2010 13:42:41 -0400 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hey Juan, You need to use $hit->description; -Shalabh On Mon, Jun 28, 2010 at 1:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I > do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, > for example: > > >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From buiduyminh at gmail.com Tue Jun 29 09:58:09 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Tue, 29 Jun 2010 09:58:09 -0400 Subject: [Bioperl-l] Error when Using BLAT???? Message-ID: Hi everyone, I am writing an application that allows me to search through a database (yeast.nt*) *with a few queries (yeastquery.fasta). Here is the code: *use warnings;* *use Bio::Tools::Run::Alignment::Blat;* *use Bio::SeqIO;* *use Bio::DB::Fasta;* * * *my $seqio_object = Bio::SeqIO -> new (-file => 'C:/Users/MINH/Desktop/yeastquery.fasta', -format => 'fasta'); * * * *my $database = 'C:/Users/MINH/Desktop/yeast.nt';* *my $db = Bio::DB::Fasta->new($database); * * * *my $factory = Bio::Tools::Run::Alignment::Blat->new(); * * * *while (my $blat_object = $seqio_object -> next_seq) {** * * my $results = $factory -> run($blat_object,$db); * *}* BUT i got this error and don't know how to fix it. I am sorry, i am new to Perl and Bioperl. I am using window 7, Strawberry. *Replacement list is longer than search list at C:/strawberry/perl/site/lib/Bio/Range.pm line 251.* *Use of uninitialized value in concatenation (.) or string at C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm line 251, line 1.* *'-out' is not recognized as an internal or external command,* *operable program or batch file.* * * *------------- EXCEPTION: Bio::Root::Exception -------------* *MSG: Blat call ( -out=psl C:\Users\MINH\AppData\Local\Temp\BUiXTGzYC2 C:\Users\MINH\AppData\Local\Temp\yQK5pzgJ_z) crashed: 256 * * * *STACK: Error::throw* *STACK: Bio::Root::Root::throw C:/strawberry/perl/site/lib/Bio/Root/Root.pm:368* *STACK: Bio::Tools::Run::Alignment::Blat::_run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:261* *STACK: Bio::Tools::Run::Alignment::Blat::run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:178* *STACK: D:/eclipswp/bioperl/readfasta.pl:15* *-----------------------------------------------------------* Thank you for your help. From david.breimann at gmail.com Tue Jun 29 10:01:49 2010 From: david.breimann at gmail.com (David Breimann) Date: Tue, 29 Jun 2010 07:01:49 -0700 (PDT) Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome Message-ID: Hello, I have calculated some numeric score for each nucleotide in some genbank file.I would like to plot these scores against the genome. I'm quite new to bio perl so I have done some reading and experimenting with Bio::Graphics and followed the examples in the docs. However, I am not sure how can I easily plot this graph. Should I create a feature separately for each nucleotide? This does not seem to make snse. I thought Bio::Graphics::Glyph::xyplot might be relevant but coul not fully understand how to apply the example given to my setting. Thanks, David From biopython at maubp.freeserve.co.uk Tue Jun 29 10:51:55 2010 From: biopython at maubp.freeserve.co.uk (Peter) Date: Tue, 29 Jun 2010 15:51:55 +0100 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: On Tue, Jun 29, 2010 at 3:01 PM, David Breimann wrote: > Hello, > > I have calculated some numeric score for each nucleotide in some > genbank file.I would like to plot these scores against the genome. > As a quick solution you could use Artemis. Load the GenBank file, then menu Graph, Add User Plot, and pick a plot file. There are several supported formats but the simplest is one score per line (one line per nucleotide). You can use several scores per line (i.e. several scores per nucleotide) and then you get several different color lines on the plot. See: http://www.sanger.ac.uk/resources/software/artemis/ Peter From cjfields at illinois.edu Tue Jun 29 11:18:52 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 10:18:52 -0500 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> This is also possible via Bio::Graphics I believe, using some of the xyplot glyphs. Genome-wide information is probably better described using a compressed format like wig/bigwig (which BioPerl can also read via Lincoln's Bio::BigFile). chris On Jun 29, 2010, at 9:51 AM, Peter wrote: > On Tue, Jun 29, 2010 at 3:01 PM, David Breimann > wrote: >> Hello, >> >> I have calculated some numeric score for each nucleotide in some >> genbank file.I would like to plot these scores against the genome. >> > > As a quick solution you could use Artemis. Load the GenBank file, > then menu Graph, Add User Plot, and pick a plot file. There are > several supported formats but the simplest is one score per line > (one line per nucleotide). You can use several scores per line (i.e. > several scores per nucleotide) and then you get several different > color lines on the plot. See: > > http://www.sanger.ac.uk/resources/software/artemis/ > > Peter > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jovel_juan at hotmail.com Tue Jun 29 14:18:33 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Tue, 29 Jun 2010 18:18:33 +0000 Subject: [Bioperl-l] Parsing by organism In-Reply-To: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> References: , , <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hello Everybody! When using SearchIO to parse BLAST reports, is it possible to extract only hits belonging to an specific organism? If yes, how? Thanks in advance, JUAN _________________________________________________________________ Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy! http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us From shalabh.sharma7 at gmail.com Tue Jun 29 15:08:40 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Tue, 29 Jun 2010 15:08:40 -0400 Subject: [Bioperl-l] Parsing by organism In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hey Juan, When you parse your blast file and to get description you use $hit->description. That field contains information about the organism (in the square brackets , [....]), there you can have a condition for a particular organism. -Shalabh On Tue, Jun 29, 2010 at 2:18 PM, Juan Jovel wrote: > > Hello Everybody! > > When using SearchIO to parse BLAST reports, is it possible to extract only > hits belonging to an specific organism? If yes, how? > > Thanks in advance, > > JUAN > > _________________________________________________________________ > Invite your mail contacts to join your friends list with Windows Live > Spaces. It's easy! > > http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 29 17:06:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 30 Jun 2010 09:06:33 +1200 Subject: [Bioperl-l] SearchIO hit->description mod? In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32E731078A1@exchsth.agresearch.co.nz> Not sure if it's a useful tweak, but is it worth changing $hit->description to return an array? Just mentioned it as I notice when I'm parsing search results from Blasts against the NR database, the fasta header line consists of multiple values separated by a CTRL-A. $hit->accession will give you the accession of the first element in the header but $hit->description will give you the descriptions of all the rest of the elements. Probably not explaining it very well but perhaps both $hit->description and $hit->accession should return arrays or maybe use wantarray and return either a scalar or array? I don't know my way around the code well enough but it probably belongs further up the tree - Bio::Search::Hit? or even up in Bio::Seq? My hack for just getting back the first description, that matches up with the accession I hope, is: (split(chr(1),$hit->description))[0] --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 29 18:41:28 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 29 Jun 2010 17:41:28 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] Message-ID: Hi, http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] The above search returns 2124 entries. I try to use the following bioperl code to do the search. I got an error (see below). Could anybody let me know how I should modify the bioperl search code to get the same results? #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'esearch', -db => 'pubmed', -email => 'mymail at foo.bar', -term => 'anoxia[mh] and neoplasms[mh]', -retmode => 'xml', -retmax => 1000000, ); print $factory->get_retmax,"\n"; print $factory->get_Response->content; ############################ $ ./main.pl --------------------- WARNING --------------------- MSG: NCBI esearch Errors/Warnings: Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage [No items found.] --------------------------------------------------- 0 000 anoxia[mh] "anoxia"[MeSH Terms] +and+neoplasms[mh]No items found. -- Regards, Peng From cjfields at illinois.edu Tue Jun 29 19:15:15 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 18:15:15 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] In-Reply-To: References: Message-ID: <2864F3E9-8212-4DF9-A2DA-8AA1C2947F13@illinois.edu> Use uppercase with bools: 'anoxia[mh] AND neoplasms[mh]' This gives me 2124 hits. Note the URL you provided does that as well ...db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] chris On Jun 29, 2010, at 5:41 PM, Peng Yu wrote: > Hi, > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] > > The above search returns 2124 entries. I try to use the following > bioperl code to do the search. I got an error (see below). Could > anybody let me know how I should modify the bioperl search code to get > the same results? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'esearch', > -db => 'pubmed', > -email => 'mymail at foo.bar', > -term => 'anoxia[mh] and neoplasms[mh]', > -retmode => 'xml', > -retmax => 1000000, > ); > > print $factory->get_retmax,"\n"; > print $factory->get_Response->content; > > ############################ > > $ ./main.pl > > --------------------- WARNING --------------------- > MSG: NCBI esearch Errors/Warnings: > Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage > [No items found.] > --------------------------------------------------- > 0 > > 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd"> > 000 > anoxia[mh] > "anoxia"[MeSH Terms] > +and+neoplasms[mh]No > items found. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 30 13:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:35:51 -0500 Subject: [Bioperl-l] Seeking comments, Bio::Species memleak fix Message-ID: <1277919351.21543.66.camel@pyrimidine.igb.uiuc.edu> All, I have a branch in github (topic/species_proxy) that converts Bio::Species into a proxy class. This appears to fix a ton of problems introduced during the Tree/Taxonomy refactoring a few years back. Advantages: 1) No need for Scalar::Util::weaken within Bio::Species or Bio::Tree::Node. Cleanup methods are handled during instance destruction. 2) This paves the way a bit more for eventual deprecation of Bio::Species in 1.7. 3) Works with bioperl-db and BioSQL as is (passes on both my local Ubuntu 9.10 and Mac OS X 10.6), perl 5.10 and 5.12, should work with earlier perl versions. Disadvantages: 1) For every Bio::Species, we have a Bio::Taxon, a Bio::Tree::Tree, and a Bio::DB::Taxonomy (one instance more than the previous Bio::Species implementation). We can probably reduce that down considerably by creating the needed instances lazily. This fixes: bug 3017 use threads to get genbank file error bug 2594 Bio::Species memory leak and possibly others: bug 2773 Bio::Tree::Node gets destroyed even though it is still live If there are no comments, I'll merge this with the master branch in the next few days. ++++++++++++++++++++++++++++++++++++++++++ (NOTE: skip the next two paragraphs if you don't want to read nasty implementation details) Bio::Species had previously inherited from Bio::Taxon, but also required it to hold a Bio::Tree::Tree which contained a circular reference back to the Bio::Species object, thus requiring Scalar::Util::weaken. This has caused several hard-to-diagnose problems with premature garbage collection, including some issues with threads (bug 3017). The above proxy fix converts Bio::Species into a proxy class, which only inherits the interface (Bio::Tree::NodeI), and delegates to an internal Bio::Taxon and a Bio::Tree::Tree. Neither contained object has a reference back to the Bio::Species instance, thus the class can perform proper garbage collection. chris From cjfields at illinois.edu Wed Jun 30 13:47:39 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:47:39 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <64DE1483-417A-4B78-9914-93260D04E90A@illinois.edu> On Jun 26, 2010, at 7:32 PM, Hilmar Lapp wrote: > > On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > That makes sense. > > -hilmar Okay, I'll merge in the various branches. Marian, your code is currently in Bio-Microarray (can be renamed if needed). Thanks! chris From j.stiller at uq.edu.au Tue Jun 1 04:03:48 2010 From: j.stiller at uq.edu.au (Jiri Stiller) Date: Tue, 01 Jun 2010 18:03:48 +1000 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation Message-ID: <1275379428.24468.20.camel@lafs-746g12s> Hi, I am trying to process bam file using Bio::Assembly::IO. I attached test script and output. When I am retrieving contigs I get correct contig number and position but contig objects build from reads of different orientation don't contain any read sequences. Contigs built from the reads of the same orientations are fine. Your help/advice would be greatly appreciated. Cheers, -- Jiri Stiller Senior Bioinformatics Researcher Australian Centre for Plant Functional Genomics School of Land, Crop and Food Sciences University of Queensland Brisbane QLD 4072 j.stiller at uq.edu.au Phone: +61 (0)7 3346 7082 Mobile: +61 (0) 422 941 581 Fax: +61 (0)7 3365 1177 -------------- next part -------------- There are [178] contigs in this assembly CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/101291-101366] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102051-102152] There are [2] sequences in this contig [TTATCTGCCAAAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCAC] HWI-EAS406:6:2:876:1541#0 1 1 76 102051 102126 [CGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATTTTTGTTATAACTAAAAATGAAA] HWI-EAS406:7:66:970:866#0 1 1 76 102077 102152 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102259-102375] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103339-103414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103503-103593] There are [2] sequences in this contig [CTTTGAATAGTGTTCCTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATT] HWI-EAS406:7:36:1651:564#0 1 1 76 103503 103578 [CTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAG] HWI-EAS406:7:42:1490:1464#0 1 1 76 103518 103593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103651-103995] There are [3] sequences in this contig [CTTTTGGGTGGTCTTACTTGCTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCT] HWI-EAS406:7:51:519:1517#0 1 1 76 103651 103726 [GATCTGAGCATCTCAGAAGCTTATATGGGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCT] HWI-EAS406:7:52:1269:1884#0 1 1 76 103714 103789 [CTCTTGCTGAAGACGAAGCAATGTGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGT] HWI-EAS406:7:100:1623:1160#0 1 1 76 103788 103863 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104002-104077] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104144-104254] There are [2] sequences in this contig [TTATGTTTTTTCTCTGAAGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCT] HWI-EAS406:6:92:1645:1627#0 1 1 76 104144 104219 [GGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAATACTACTCCTCTTCCTTGCGTTAT] HWI-EAS406:6:46:436:1967#0 1 1 76 104179 104254 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104756-104831] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105167-105268] There are [2] sequences in this contig [ATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTA] HWI-EAS406:6:62:249:1175#0 1 1 76 105167 105242 [AGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGC] HWI-EAS406:6:36:814:2018#0 1 1 76 105193 105268 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105380-105470] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106271-106439] There are [3] sequences in this contig [CTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAG] HWI-EAS406:6:93:583:1229#0 1 1 76 106271 106346 [GGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAG] HWI-EAS406:5:17:1458:1611#0 1 1 76 106308 106383 [TCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCTGATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAA] HWI-EAS406:5:57:727:683#0 1 1 76 106364 106439 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106808-106883] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/125-317] There are [5] sequences in this contig [AGGCCGTAGGAGACGGCGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAG] HWI-EAS406:6:81:1026:1375#0 1 1 76 125 200 [CGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAG] HWI-EAS406:7:99:74:1159#0 1 1 76 171 246 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:27:509:1087#0 1 1 76 176 251 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:85:844:610#0 1 1 76 176 251 [GCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAATTTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAG] HWI-EAS406:5:37:558:195#0 1 1 76 242 317 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/1282-1357] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13485-13560] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13574-13703] There are [2] sequences in this contig [TCTTGTTCTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTAC] HWI-EAS406:5:74:70:987#0 1 1 76 13574 13649 [TGTTGATGGTGGCCGAGTCTACAAGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTT] HWI-EAS406:5:63:987:1854#0 1 1 76 13628 13703 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13787-13898] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/14531-14606] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/15027-15102] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/17829-17904] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/18191-18266] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19049-19176] There are [4] sequences in this contig [ACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAACGCAAAGATGACAAA] HWI-EAS406:6:47:476:1809#0 1 1 76 19049 19124 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:5:55:902:1256#0 1 1 76 19099 19174 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:6:24:1105:1536#0 1 1 76 19099 19174 [AAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGT] HWI-EAS406:5:81:1045:1991#0 1 1 76 19101 19176 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19226-19381] There are [2] sequences in this contig [TGAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGG] HWI-EAS406:7:6:1755:615#0 1 1 76 19226 19301 [GAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGA] HWI-EAS406:7:29:1005:1120#0 1 1 76 19227 19302 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19682-19757] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19938-20081] There are [3] sequences in this contig [TTTCTCGGCCAGAAGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGAC] HWI-EAS406:5:76:1534:574#0 1 1 76 19938 20013 [TATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCG] HWI-EAS406:5:88:260:1266#0 1 1 76 19965 20040 [CTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAA] HWI-EAS406:6:68:1763:137#0 1 1 76 20006 20081 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20107-20288] There are [6] sequences in this contig [ATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATA] HWI-EAS406:7:86:946:878#0 1 1 76 20107 20182 [TGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTG] HWI-EAS406:6:47:1422:395#0 1 1 76 20128 20203 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:59:1710:1444#0 1 1 76 20205 20280 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:91:386:241#0 1 1 76 20205 20280 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:279:1687#0 1 1 76 20213 20288 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:280:1685#0 1 1 76 20213 20288 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/2023-2098] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20305-20414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20417-20492] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20848-20960] There are [2] sequences in this contig [TCAATCGGGTAAGAGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTT] HWI-EAS406:5:9:1771:746#0 1 1 76 20848 20923 [GAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCTGTGTTAT] HWI-EAS406:7:27:1692:1515#0 1 1 76 20862 20937 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20969-21057] There are [2] sequences in this contig [CCATTCGTGCTTGGTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTG] HWI-EAS406:7:25:261:426#0 1 1 76 20969 21044 [GTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCT] HWI-EAS406:6:34:1342:1525#0 1 1 76 20982 21057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21180-21271] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21281-21356] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23183-23315] There are [2] sequences in this contig [CCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAGAAATTAGTCAGAAGATCC] HWI-EAS406:6:16:1118:1937#0 1 1 76 23183 23258 [GAAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTAAGGGT] HWI-EAS406:7:99:295:294#0 1 1 76 23240 23315 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23397-23534] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/24257-24332] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26533-26608] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26627-26702] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27548-27700] There are [3] sequences in this contig [TTTGCTCACATTGTCTATGGTTTTAGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATG] HWI-EAS406:7:70:7:790#0 1 1 76 27548 27623 [AGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGC] HWI-EAS406:5:66:1045:865#0 1 1 76 27572 27647 [CCATGCCGCCAATGCCTAGCGGCGGCTCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACC] HWI-EAS406:7:11:1363:966#0 1 1 76 27625 27700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27740-28037] There are [5] sequences in this contig [TCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCCAATGGCTCCATCTTCAAGTCCAATG] HWI-EAS406:6:80:586:416#0 1 1 76 27740 27815 [CCCAAGTCCAGAAACAGTCCCTGATATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGA] HWI-EAS406:6:4:735:317#0 1 1 76 27836 27911 [CTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGGCCTCTCCAGA] HWI-EAS406:6:24:834:1604#0 1 1 76 27865 27940 [GACCCATGCCACCGGCAATGGCCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTT] HWI-EAS406:6:7:1577:1072#0 1 1 76 27910 27985 [AAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCATTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAG] HWI-EAS406:5:13:1479:1512#0 1 1 76 27962 28037 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/28046-28217] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29612-29737] There are [4] sequences in this contig [CTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGG] HWI-EAS406:6:40:287:1418#0 1 1 76 29617 29692 [CCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTT] HWI-EAS406:7:68:469:1690#0 1 1 76 29622 29697 [GCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAG] HWI-EAS406:6:52:609:1614#0 1 1 76 29645 29720 [ACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAA] HWI-EAS406:6:8:1095:1720#0 1 1 76 29662 29737 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29830-29950] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30300-30448] There are [2] sequences in this contig [GCATACTACTAGTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATA] HWI-EAS406:5:56:245:827#0 1 1 76 30300 30375 [ATACTTGACGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTA] HWI-EAS406:6:54:518:1635#0 1 1 76 30373 30448 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30513-30588] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30599-30674] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31131-31206] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31241-31316] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31740-31815] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31979-32209] There are [6] sequences in this contig [GGTAAATCTATTGTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTT] HWI-EAS406:5:36:280:195#0 1 1 76 31979 32054 [TTATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGG] HWI-EAS406:6:43:1362:96#0 1 1 76 32034 32109 [TATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGT] HWI-EAS406:5:20:1502:651#0 1 1 76 32035 32110 [TTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTG] HWI-EAS406:7:23:1380:514#0 1 1 76 32053 32128 [TTTAGAGTGATTGAGTGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAA] HWI-EAS406:6:2:1437:1250#0 1 1 76 32116 32191 [TGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTCAGTCTCTTA] HWI-EAS406:5:12:820:1835#0 1 1 76 32134 32209 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3201-3322] There are [3] sequences in this contig [ACATGACCCGAACCGAATCCGATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATC] HWI-EAS406:7:4:730:1881#0 1 1 76 3201 3276 [GAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCG] HWI-EAS406:5:24:1242:1707#0 1 1 76 3226 3301 [ACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCGAGAAGACCCGAACCGAGAATT] HWI-EAS406:7:93:1120:174#0 1 1 76 3247 3322 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/32214-33432] There are [37] sequences in this contig [GCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGA] HWI-EAS406:5:80:1511:419#0 1 1 76 32230 32305 [GCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAG] HWI-EAS406:7:1:1373:1308#0 1 1 76 32233 32308 [GAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCC] HWI-EAS406:5:4:716:332#0 1 1 76 32283 32358 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:35:950:2013#0 1 1 76 32295 32370 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:80:372:1536#0 1 1 76 32295 32370 [AGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGT] HWI-EAS406:6:48:889:1456#0 1 1 76 32296 32371 [GCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAG] HWI-EAS406:6:55:699:904#0 1 1 76 32320 32395 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:6:43:758:1706#0 1 1 76 32331 32406 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:7:23:801:958#0 1 1 76 32331 32406 [GAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAA] HWI-EAS406:5:40:1659:524#0 1 1 76 32359 32434 [AGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGA] HWI-EAS406:7:75:276:530#0 1 1 76 32366 32441 [TATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTA] HWI-EAS406:5:69:687:818#0 1 1 76 32403 32478 [TTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAG] HWI-EAS406:7:82:811:1711#0 1 1 76 32407 32482 [GTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCA] HWI-EAS406:6:18:728:1283#0 1 1 76 32409 32484 [TAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAA] HWI-EAS406:7:39:575:1279#0 1 1 76 32446 32521 [ATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTACTTCAAAAGC] HWI-EAS406:5:77:554:699#0 1 1 76 32484 32559 [TCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAG] HWI-EAS406:6:38:322:1075#0 1 1 76 32552 32627 [AAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGG] HWI-EAS406:6:4:1708:1127#0 1 1 76 32554 32629 [AAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAA] HWI-EAS406:6:96:313:366#0 1 1 76 32581 32656 [AGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTT] HWI-EAS406:7:24:1099:862#0 1 1 76 32594 32669 [TGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTC] HWI-EAS406:7:93:648:748#0 1 1 76 32596 32671 [AGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCCAGACGAAGATA] HWI-EAS406:7:36:1426:1766#0 1 1 76 32626 32701 [TGCCAGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGA] HWI-EAS406:6:7:1217:1949#0 1 1 76 32687 32762 [CCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCG] HWI-EAS406:7:16:1331:1702#0 1 1 76 32703 32778 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:5:49:1610:706#0 1 1 76 32740 32815 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:7:34:213:833#0 1 1 76 32740 32815 [CATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCAT] HWI-EAS406:5:66:1471:637#0 1 1 76 32742 32817 [GCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTGGGTTAGACTGCGGTGATTATC] HWI-EAS406:7:38:1290:397#0 1 1 76 32776 32851 [CCGCCGTGTCCAGATAGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATG] HWI-EAS406:6:48:1074:1154#0 1 1 76 32956 33031 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:6:1:315:1531#0 1 1 76 32994 33069 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:7:92:232:127#0 1 1 76 32994 33069 [ATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTA] HWI-EAS406:6:65:1385:736#0 1 1 76 33061 33136 [TTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAG] HWI-EAS406:7:64:152:1162#0 1 1 76 33091 33166 [GTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGCGCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGC] HWI-EAS406:6:47:1344:2015#0 1 1 76 33142 33217 [TTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAGACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCC] HWI-EAS406:5:53:181:602#0 1 1 76 33286 33361 [CAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTT] HWI-EAS406:5:82:1052:1943#0 1 1 76 33337 33412 [TGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTG] HWI-EAS406:7:45:1464:1655#0 1 1 76 33357 33432 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33440-33860] There are [12] sequences in this contig [AACAAAGGTACATGTATAAATGTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATT] HWI-EAS406:7:88:1428:1042#0 1 1 76 33440 33515 [GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCT] HWI-EAS406:7:3:1161:1283#0 1 1 76 33461 33536 [AGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGT] HWI-EAS406:7:7:1669:1770#0 1 1 76 33465 33540 [AGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAAC] HWI-EAS406:5:9:203:511#0 1 1 76 33471 33546 [AACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAACTATTGGTGAGCAAATT] HWI-EAS406:6:36:660:812#0 1 1 76 33487 33562 [TTGATGAGGAGCGAGAGTATGACCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAA] HWI-EAS406:7:94:1100:1480#0 1 1 76 33579 33654 [GAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGA] HWI-EAS406:6:38:327:576#0 1 1 76 33699 33774 [GGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATT] HWI-EAS406:6:64:1457:110#0 1 1 76 33701 33776 [GTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGA] HWI-EAS406:7:70:734:1923#0 1 1 76 33704 33779 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:5:38:1327:1329#0 1 1 76 33716 33791 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:7:58:1187:138#0 1 1 76 33716 33791 [GAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTG] HWI-EAS406:7:98:1611:696#0 1 1 76 33718 33793 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3373-3533] There are [2] sequences in this contig [CACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTT] HWI-EAS406:7:63:789:161#0 1 1 76 3373 3448 [CGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCA] HWI-EAS406:7:50:888:1103#0 1 1 76 3408 3483 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33872-34074] There are [5] sequences in this contig [AGCTCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAA] HWI-EAS406:6:61:1059:811#0 1 1 76 33872 33947 [TCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT] HWI-EAS406:7:37:209:1471#0 1 1 76 33875 33950 [AGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTTCTA] HWI-EAS406:7:51:467:1510#0 1 1 76 33878 33953 [CAGGCTAACTTCTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGAT] HWI-EAS406:6:23:1431:966#0 1 1 76 33940 34015 [GACAGTGGGACAATGATACATATGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGA] HWI-EAS406:6:37:467:1855#0 1 1 76 33999 34074 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/339-458] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34368-34443] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34773-34850] There are [2] sequences in this contig [TCTGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTA] HWI-EAS406:7:42:1652:1481#0 1 1 76 34773 34848 [TGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGA] HWI-EAS406:6:57:1235:1165#0 1 1 76 34775 34850 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/35200-35275] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3595-3703] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3722-3816] There are [2] sequences in this contig [AGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTG] HWI-EAS406:5:40:1484:49#0 1 1 76 3722 3797 [GTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTGGTCTGATACAATTTGGGCT] HWI-EAS406:6:54:632:1253#0 1 1 76 3741 3816 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38041-38163] There are [2] sequences in this contig [AAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGACAATATTGCTACCCACGGCTTAATAAAAGTTGCGTGT] HWI-EAS406:7:59:595:1702#0 1 1 76 38041 38116 [CTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGGTCTTAGACAAAGA] HWI-EAS406:6:45:1385:450#0 1 1 76 38088 38163 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38179-38348] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3933-4035] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/40492-40567] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/42571-42646] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43000-43120] There are [2] sequences in this contig [GCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGCATCCAGAACCCACGACAACTAATACTAGCCAA] HWI-EAS406:6:48:1107:1243#0 1 1 76 43007 43082 [ACCTGCATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG] HWI-EAS406:6:16:215:1613#0 1 1 76 43045 43120 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43213-43322] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43346-43459] There are [3] sequences in this contig [TCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAA] HWI-EAS406:5:61:1069:1184#0 1 1 76 43346 43421 [CCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATC] HWI-EAS406:7:30:1025:1208#0 1 1 76 43378 43453 [CGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTC] HWI-EAS406:6:91:366:235#0 1 1 76 43384 43459 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43804-43879] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43994-44071] There are [2] sequences in this contig [AGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGG] HWI-EAS406:5:67:352:1473#0 1 1 76 43994 44069 [GGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAG] HWI-EAS406:5:11:796:675#0 1 1 76 43996 44071 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44197-44354] There are [4] sequences in this contig [TAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGT] HWI-EAS406:7:78:1706:1488#0 1 1 76 44197 44272 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:5:40:1010:733#0 1 1 76 44238 44313 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:6:6:1380:1161#0 1 1 76 44238 44313 [GATTGCCTTGTGAGTCCCAATATGATCCTCGATTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGT] HWI-EAS406:6:39:1311:1899#0 1 1 76 44279 44354 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44386-44669] There are [2] sequences in this contig [GGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCTAGAAGTAAAAA] HWI-EAS406:5:8:579:1223#0 1 1 76 44386 44461 [CCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCATCACCCGACACATTA] HWI-EAS406:6:33:276:2024#0 1 1 76 44529 44604 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44736-44811] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/474-549] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48444-48600] There are [2] sequences in this contig [GTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGCCAAGCTAAG] HWI-EAS406:6:36:565:711#0 1 1 76 48444 48519 [TATAGACTGCCAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTT] HWI-EAS406:7:56:1561:265#0 1 1 76 48501 48576 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48653-49079] There are [10] sequences in this contig [ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAA] HWI-EAS406:5:10:337:1092#0 1 1 76 48721 48796 [AAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAA] HWI-EAS406:5:11:1385:2002#0 1 1 76 48757 48832 [TGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAA] HWI-EAS406:6:62:259:1312#0 1 1 76 48782 48857 [AGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATATGAATCAAATACCTGTCGATTTT] HWI-EAS406:7:33:1719:1816#0 1 1 76 48807 48882 [AATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGG] HWI-EAS406:5:17:1474:1143#0 1 1 76 48883 48958 [GCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCT] HWI-EAS406:7:33:65:1522#0 1 1 76 48890 48965 [CATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCT] HWI-EAS406:7:97:1691:1904#0 1 1 76 48897 48972 [TTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTA] HWI-EAS406:6:62:998:2004#0 1 1 76 48927 49002 [GTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTC] HWI-EAS406:7:41:1526:1040#0 1 1 76 48936 49011 [GCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTCACAATACTCTTCACAGCTGTGAGC] HWI-EAS406:5:63:1654:235#0 1 1 76 48960 49035 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49084-49976] There are [46] sequences in this contig [AGAGATATGAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAAC] HWI-EAS406:5:54:681:1708#0 1 1 76 49107 49182 [GAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCG] HWI-EAS406:7:30:1305:206#0 1 1 76 49115 49190 [TGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAACCGTATCTCT] HWI-EAS406:7:68:588:743#0 1 1 76 49145 49220 [GAACCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTCTGA] HWI-EAS406:5:60:1517:1629#0 1 1 76 49208 49283 [AGCCTGTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCC] HWI-EAS406:7:97:948:1532#0 1 1 76 49269 49344 [GTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAA] HWI-EAS406:7:53:1440:1060#0 1 1 76 49274 49349 [TCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGT] HWI-EAS406:5:68:1041:1314#0 1 1 76 49279 49354 [TCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGTGAGACGGTGGCGGTATGAGGGTTGCTTGA] HWI-EAS406:5:92:967:285#0 1 1 76 49308 49383 [TAAAAAAATGAAAAAAATAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACA] HWI-EAS406:7:98:1054:1631#0 1 1 76 49389 49464 [TAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTA] HWI-EAS406:6:33:635:533#0 1 1 76 49406 49481 [TTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGAC] HWI-EAS406:5:63:1559:1547#0 1 1 76 49453 49528 [AAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGA] HWI-EAS406:6:54:789:786#0 1 1 76 49459 49534 [TTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAA] HWI-EAS406:6:39:1685:1777#0 1 1 76 49470 49545 [AGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGT] HWI-EAS406:6:95:1346:1513#0 1 1 76 49476 49551 [AAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTC] HWI-EAS406:7:45:856:1803#0 1 1 76 49495 49570 [ATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCAC] HWI-EAS406:7:17:551:847#0 1 1 76 49507 49582 [CAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAAC] HWI-EAS406:7:55:752:1229#0 1 1 76 49524 49599 [AGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACA] HWI-EAS406:7:37:659:1877#0 1 1 76 49525 49600 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:5:52:34:1884#0 1 1 76 49531 49606 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:6:40:1211:1751#0 1 1 76 49531 49606 [CGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC] HWI-EAS406:5:58:257:1600#0 1 1 76 49555 49630 [CCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTCCA] HWI-EAS406:6:72:868:197#0 1 1 76 49557 49632 [CCACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATG] HWI-EAS406:7:35:1732:912#0 1 1 76 49601 49676 [CACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGA] HWI-EAS406:5:6:321:1826#0 1 1 76 49602 49677 [ACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAG] HWI-EAS406:6:2:1733:562#0 1 1 76 49603 49678 [AAGATGAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAA] HWI-EAS406:5:44:1362:1897#0 1 1 76 49671 49746 [GAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCA] HWI-EAS406:6:1:1082:657#0 1 1 76 49676 49751 [GCCTGCAAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAG] HWI-EAS406:6:53:1533:1846#0 1 1 76 49754 49829 [AAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGAT] HWI-EAS406:5:83:1518:639#0 1 1 76 49760 49835 [GTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAG] HWI-EAS406:7:6:1067:204#0 1 1 76 49789 49864 [TCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCG] HWI-EAS406:6:41:858:1916#0 1 1 76 49806 49881 [CCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGT] HWI-EAS406:7:26:1458:1886#0 1 1 76 49807 49882 [TTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACG] HWI-EAS406:6:2:872:581#0 1 1 76 49814 49889 [CTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGAT] HWI-EAS406:7:7:311:1973#0 1 1 76 49847 49922 [TGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATC] HWI-EAS406:5:43:1531:1812#0 1 1 76 49848 49923 [GATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAG] HWI-EAS406:5:80:139:821#0 1 1 76 49857 49932 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:5:26:200:1239#0 1 1 76 49861 49936 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:6:26:1096:1809#0 1 1 76 49861 49936 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:24:774:383#0 1 1 76 49862 49937 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:49:1571:1861#0 1 1 76 49862 49937 [AGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCC] HWI-EAS406:7:94:1301:1918#0 1 1 76 49866 49941 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:5:2:12:1497#0 1 1 76 49879 49954 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:6:9:645:1495#0 1 1 76 49879 49954 [CGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCT] HWI-EAS406:7:64:1555:372#0 1 1 76 49880 49955 [CTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTC] HWI-EAS406:6:24:463:628#0 1 1 76 49894 49969 [CGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTA] HWI-EAS406:7:8:863:63#0 1 1 76 49901 49976 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49982-50183] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50401-50539] There are [7] sequences in this contig [AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGC] HWI-EAS406:7:4:1328:1505#0 1 1 76 50401 50476 [CTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAG] HWI-EAS406:7:68:1290:1820#0 1 1 76 50410 50485 [GTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATAC] HWI-EAS406:7:93:895:769#0 1 1 76 50426 50501 [ATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATC] HWI-EAS406:5:38:578:1978#0 1 1 76 50439 50514 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:40:685:1064#0 1 1 76 50444 50519 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:6:73:1068:946#0 1 1 76 50453 50528 [ATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTT] HWI-EAS406:5:9:479:1782#0 1 1 76 50464 50539 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50554-55307] There are [3361] sequences in this contig [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:43:1500:794#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:84:648:826#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:7:16:503:229#0 1 1 76 50554 50629 [GCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGAC] HWI-EAS406:5:85:289:1897#0 1 1 76 50557 50632 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACA] HWI-EAS406:6:96:103:272#0 1 1 76 50558 50633 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:6:1:208:981#0 1 1 76 50560 50635 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:7:7:1771:1016#0 1 1 76 50560 50635 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCA] HWI-EAS406:5:29:636:1854#0 1 1 76 50564 50639 [GCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAG] HWI-EAS406:7:36:1104:1759#0 1 1 76 50566 50641 [AAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCT] HWI-EAS406:7:54:1327:1715#0 1 1 76 50571 50646 [AAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTC] HWI-EAS406:6:1:1062:918#0 1 1 76 50572 50647 [AAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCT] HWI-EAS406:6:11:1780:829#0 1 1 76 50573 50648 [AGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTG] HWI-EAS406:7:30:1018:1822#0 1 1 76 50574 50649 [GTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGC] HWI-EAS406:6:19:566:1606#0 1 1 76 50590 50665 [CATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGA] HWI-EAS406:5:57:665:1234#0 1 1 76 50592 50667 [TGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCT] HWI-EAS406:6:32:1315:1182#0 1 1 76 50595 50670 [GGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTT] HWI-EAS406:7:73:718:707#0 1 1 76 50596 50671 [GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGG] HWI-EAS406:6:52:1154:867#0 1 1 76 50611 50686 [GAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGA] HWI-EAS406:7:34:629:1493#0 1 1 76 50612 50687 [GACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAG] HWI-EAS406:7:90:1010:1759#0 1 1 76 50616 50691 [ACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGT] HWI-EAS406:7:94:774:1420#0 1 1 76 50617 50692 [CAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCG] HWI-EAS406:7:40:826:413#0 1 1 76 50619 50694 [GCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTT] HWI-EAS406:6:74:90:506#0 1 1 76 50628 50703 [TGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAG] HWI-EAS406:6:21:173:1409#0 1 1 76 50648 50723 [GGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAG] HWI-EAS406:7:64:926:1064#0 1 1 76 50661 50736 [GCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGC] HWI-EAS406:5:32:717:546#0 1 1 76 50736 50811 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:5:65:1666:1672#0 1 1 76 50739 50814 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:6:24:1782:1765#0 1 1 76 50745 50820 [AAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGC] HWI-EAS406:5:23:1107:1513#0 1 1 76 50747 50822 [GCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGAC] HWI-EAS406:7:38:557:566#0 1 1 76 50752 50827 [CTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACG] HWI-EAS406:6:49:1324:1654#0 1 1 76 50753 50828 [TCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGA] HWI-EAS406:7:59:762:782#0 1 1 76 50754 50829 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:24:963:235#0 1 1 76 50756 50831 [CACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGA] HWI-EAS406:6:64:951:728#0 1 1 76 50764 50839 [ACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAA] HWI-EAS406:6:56:768:1346#0 1 1 76 50765 50840 [CGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAG] HWI-EAS406:5:3:205:160#0 1 1 76 50773 50848 [GGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGC] HWI-EAS406:7:34:471:1673#0 1 1 76 50774 50849 [GACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCT] HWI-EAS406:5:46:1284:820#0 1 1 76 50779 50854 [TCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCA] HWI-EAS406:6:5:1225:596#0 1 1 76 50783 50858 [CCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAG] HWI-EAS406:6:7:835:305#0 1 1 76 50784 50859 [GGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCG] HWI-EAS406:7:74:747:461#0 1 1 76 50802 50877 [TCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCG] HWI-EAS406:7:74:174:410#0 1 1 76 50808 50883 [ATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAG] HWI-EAS406:7:37:415:589#0 1 1 76 50818 50893 [GAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:7:6:1564:858#0 1 1 76 50846 50921 [CAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCT] HWI-EAS406:7:7:1295:1258#0 1 1 76 50857 50932 [AGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTA] HWI-EAS406:7:55:52:968#0 1 1 76 50858 50933 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:34:1227:1484#0 1 1 76 50885 50960 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:6:15:427:980#0 1 1 76 50890 50965 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:5:1113:853#0 1 1 76 50905 50980 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:5:77:324:1399#0 1 1 76 50911 50986 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:6:3:1766:1294#0 1 1 76 50911 50986 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:6:68:479:1856#0 1 1 76 50912 50987 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:7:84:89:1889#0 1 1 76 50912 50987 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:27:1458:1785#0 1 1 76 50914 50989 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:5:80:1487:4#0 1 1 76 50915 50990 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:822:1111#0 1 1 76 50915 50990 [AGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTT] HWI-EAS406:6:67:1266:536#0 1 1 76 50917 50992 [TTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACAT] HWI-EAS406:6:53:391:407#0 1 1 76 50946 51021 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:7:51:1586:385#0 1 1 76 51057 51132 [TTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTG] HWI-EAS406:5:77:1740:1118#0 1 1 76 51067 51142 [GTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAAT] HWI-EAS406:5:75:1703:1973#0 1 1 76 51097 51172 [TTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCC] HWI-EAS406:6:59:1497:1156#0 1 1 76 51106 51181 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:45:613:569#0 1 1 76 51114 51189 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:6:38:774:1374#0 1 1 76 51119 51194 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:7:19:1655:985#0 1 1 76 51119 51194 [GTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAA] HWI-EAS406:6:1:411:322#0 1 1 76 51125 51200 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:60:917:484#0 1 1 76 51126 51201 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:7:45:192:1424#0 1 1 76 51126 51201 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:22:460:1175#0 1 1 76 51127 51202 [TTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGA] HWI-EAS406:7:9:483:12#0 1 1 76 51134 51209 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1024:1704#0 1 1 76 51136 51211 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:7:44:768:1276#0 1 1 76 51136 51211 [GTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGT] HWI-EAS406:7:25:542:1763#0 1 1 76 51139 51214 [TTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTG] HWI-EAS406:7:56:429:836#0 1 1 76 51140 51215 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:51:712:653#0 1 1 76 51142 51217 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:46:769:653#0 1 1 76 51143 51218 [TTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAA] HWI-EAS406:7:28:1567:1843#0 1 1 76 51145 51220 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:31:66:1932#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:80:607:669#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:47:37:1870#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:57:619:901#0 1 1 76 51150 51225 [TTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGA] HWI-EAS406:5:55:446:1090#0 1 1 76 51156 51231 [CTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAAT] HWI-EAS406:5:71:1271:1404#0 1 1 76 51158 51233 [ACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCAT] HWI-EAS406:7:46:161:1083#0 1 1 76 51162 51237 [GATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGT] HWI-EAS406:6:55:894:421#0 1 1 76 51166 51241 [AATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGG] HWI-EAS406:7:48:228:1846#0 1 1 76 51170 51245 [ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGG] HWI-EAS406:5:59:568:1370#0 1 1 76 51171 51246 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:7:49:1543:1352#0 1 1 76 51177 51252 [TCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAG] HWI-EAS406:5:60:1319:266#0 1 1 76 51179 51254 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:52:727:1470#0 1 1 76 51180 51255 [CAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGG] HWI-EAS406:5:63:1667:1992#0 1 1 76 51181 51256 [ATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTG] HWI-EAS406:5:46:1397:1605#0 1 1 76 51183 51258 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:5:23:1576:1720#0 1 1 76 51186 51261 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:7:53:872:761#0 1 1 76 51186 51261 [TTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGT] HWI-EAS406:7:36:218:140#0 1 1 76 51190 51265 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:456:1253#0 1 1 76 51194 51269 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:5:40:683:389#0 1 1 76 51195 51270 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:6:99:167:1295#0 1 1 76 51195 51270 [GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTT] HWI-EAS406:7:24:1480:278#0 1 1 76 51205 51280 [GATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTA] HWI-EAS406:6:47:812:175#0 1 1 76 51208 51283 [CTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATAT] HWI-EAS406:7:45:715:611#0 1 1 76 51225 51300 [GGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCC] HWI-EAS406:7:52:777:540#0 1 1 76 51229 51304 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:53:1708:725#0 1 1 76 51233 51308 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:55:1111:1008#0 1 1 76 51233 51308 [TCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCT] HWI-EAS406:7:44:635:681#0 1 1 76 51234 51309 [AGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTA] HWI-EAS406:6:51:1602:1743#0 1 1 76 51243 51318 [AAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATG] HWI-EAS406:7:72:942:1104#0 1 1 76 51252 51327 [TTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTT] HWI-EAS406:5:54:509:734#0 1 1 76 51265 51340 [GCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCA] HWI-EAS406:5:80:717:232#0 1 1 76 51270 51345 [CTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCAC] HWI-EAS406:6:52:1029:1911#0 1 1 76 51271 51346 [TTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTT] HWI-EAS406:6:40:135:217#0 1 1 76 51280 51355 [GTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCAT] HWI-EAS406:7:50:892:1037#0 1 1 76 51286 51361 [TTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATT] HWI-EAS406:7:51:1180:964#0 1 1 76 51294 51369 [TCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTT] HWI-EAS406:5:52:1010:1723#0 1 1 76 51295 51370 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:5:36:629:1477#0 1 1 76 51296 51371 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:6:56:196:1560#0 1 1 76 51296 51371 [CCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCG] HWI-EAS406:7:66:1229:1457#0 1 1 76 51303 51378 [TTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA] HWI-EAS406:5:28:1059:907#0 1 1 76 51305 51380 [GCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAG] HWI-EAS406:5:46:395:1707#0 1 1 76 51307 51382 [CTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGG] HWI-EAS406:7:41:1649:828#0 1 1 76 51308 51383 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:7:50:1701:636#0 1 1 76 51317 51392 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:6:97:666:1514#0 1 1 76 51325 51400 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:7:79:454:980#0 1 1 76 51325 51400 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:83:1758:1547#0 1 1 76 51327 51402 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:55:1085:812#0 1 1 76 51333 51408 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:45:1784:1703#0 1 1 76 51340 51415 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:75:977:1193#0 1 1 76 51341 51416 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:83:23:1147#0 1 1 76 51341 51416 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:5:66:1350:1008#0 1 1 76 51343 51418 [CACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCT] HWI-EAS406:7:40:988:1790#0 1 1 76 51344 51419 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:6:21:1052:487#0 1 1 76 51348 51423 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:53:1085:1630#0 1 1 76 51355 51430 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:76:504:223#0 1 1 76 51355 51430 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:61:102:1424#0 1 1 76 51356 51431 [ATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTT] HWI-EAS406:7:67:853:1547#0 1 1 76 51357 51432 [TCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTG] HWI-EAS406:5:43:512:2027#0 1 1 76 51358 51433 [CATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGC] HWI-EAS406:6:51:1565:1778#0 1 1 76 51359 51434 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:68:1234:1128#0 1 1 76 51363 51438 [GCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGA] HWI-EAS406:6:28:1631:1290#0 1 1 76 51365 51440 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:41:997:642#0 1 1 76 51367 51442 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:46:1363:675#0 1 1 76 51367 51442 [CTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTG] HWI-EAS406:7:67:1153:1729#0 1 1 76 51371 51446 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:51:1783:1732#0 1 1 76 51372 51447 [CCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT] HWI-EAS406:7:39:1211:2033#0 1 1 76 51375 51450 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:5:7:1228:400#0 1 1 76 51376 51451 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:6:60:780:1892#0 1 1 76 51376 51451 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:6:50:731:984#0 1 1 76 51377 51452 [GAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAA] HWI-EAS406:6:51:108:1422#0 1 1 76 51378 51453 [TGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGC] HWI-EAS406:5:59:144:1944#0 1 1 76 51384 51459 [GTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCT] HWI-EAS406:7:50:397:1516#0 1 1 76 51385 51460 [TTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTA] HWI-EAS406:6:44:1729:1021#0 1 1 76 51386 51461 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:5:65:954:1755#0 1 1 76 51388 51463 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:6:57:1789:1580#0 1 1 76 51388 51463 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:44:794:1993#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:53:1459:823#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:6:53:911:1708#0 1 1 76 51389 51464 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:34:1608:163#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:43:1600:240#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:6:45:1200:1310#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:7:59:1447:1020#0 1 1 76 51390 51465 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:6:43:1110:1150#0 1 1 76 51391 51466 [GAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAG] HWI-EAS406:5:46:1057:798#0 1 1 76 51392 51467 [AATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCT] HWI-EAS406:5:46:1495:1178#0 1 1 76 51394 51469 [ATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTA] HWI-EAS406:7:55:1203:544#0 1 1 76 51395 51470 [TGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAA] HWI-EAS406:7:50:940:1822#0 1 1 76 51396 51471 [CCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATA] HWI-EAS406:5:41:907:1844#0 1 1 76 51398 51473 [CCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAG] HWI-EAS406:7:53:1444:557#0 1 1 76 51399 51474 [CGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGA] HWI-EAS406:7:51:1720:921#0 1 1 76 51400 51475 [GAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGAC] HWI-EAS406:7:85:1682:878#0 1 1 76 51401 51476 [GACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTT] HWI-EAS406:6:55:373:154#0 1 1 76 51403 51478 [AACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTT] HWI-EAS406:5:17:1384:1558#0 1 1 76 51406 51481 [ACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTA] HWI-EAS406:5:55:1012:1598#0 1 1 76 51407 51482 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:64:1284:590#0 1 1 76 51488 51563 [ATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAG] HWI-EAS406:7:41:26:1789#0 1 1 76 51500 51575 [TTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATT] HWI-EAS406:6:53:39:1372#0 1 1 76 51504 51579 [TCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTG] HWI-EAS406:5:42:711:818#0 1 1 76 51505 51580 [GACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGC] HWI-EAS406:5:23:374:1326#0 1 1 76 51514 51589 [ACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT] HWI-EAS406:6:53:1070:1881#0 1 1 76 51515 51590 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:6:44:1471:1754#0 1 1 76 51520 51595 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:7:49:1247:784#0 1 1 76 51520 51595 [GTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGA] HWI-EAS406:7:52:523:1250#0 1 1 76 51524 51599 [TTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATA] HWI-EAS406:6:48:1635:1117#0 1 1 76 51526 51601 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:5:50:1396:1724#0 1 1 76 51532 51607 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:7:55:1695:1934#0 1 1 76 51532 51607 [ATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGAT] HWI-EAS406:7:75:1084:1280#0 1 1 76 51533 51608 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:5:53:1039:831#0 1 1 76 51534 51609 [TTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGA] HWI-EAS406:5:46:847:740#0 1 1 76 51536 51611 [CAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCAT] HWI-EAS406:6:54:1299:528#0 1 1 76 51540 51615 [AAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATT] HWI-EAS406:5:27:1164:521#0 1 1 76 51541 51616 [ATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTG] HWI-EAS406:6:47:445:273#0 1 1 76 51543 51618 [GCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCAT] HWI-EAS406:7:45:553:1319#0 1 1 76 51547 51622 [CATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATC] HWI-EAS406:7:11:854:1813#0 1 1 76 51548 51623 [TTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCT] HWI-EAS406:5:38:485:1629#0 1 1 76 51550 51625 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:7:45:1007:739#0 1 1 76 51556 51631 [ATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATAC] HWI-EAS406:5:39:868:1983#0 1 1 76 51561 51636 [GCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATG] HWI-EAS406:7:40:711:530#0 1 1 76 51588 51663 [TGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGT] HWI-EAS406:5:69:29:997#0 1 1 76 51597 51672 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:5:25:1170:1418#0 1 1 76 51598 51673 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:6:39:632:1874#0 1 1 76 51598 51673 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:46:1372:1936#0 1 1 76 51602 51677 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:55:604:688#0 1 1 76 51602 51677 [TGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTT] HWI-EAS406:5:53:1104:1965#0 1 1 76 51605 51680 [GATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTC] HWI-EAS406:5:40:1519:548#0 1 1 76 51606 51681 [ATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCC] HWI-EAS406:7:54:543:798#0 1 1 76 51607 51682 [TTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCT] HWI-EAS406:6:53:520:1012#0 1 1 76 51608 51683 [TCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAG] HWI-EAS406:6:98:1293:1754#0 1 1 76 51612 51687 [CATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGT] HWI-EAS406:5:63:1624:1802#0 1 1 76 51613 51688 [ATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTC] HWI-EAS406:6:8:950:1304#0 1 1 76 51614 51689 [TTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCA] HWI-EAS406:5:61:535:401#0 1 1 76 51615 51690 [TTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAA] HWI-EAS406:5:26:1745:468#0 1 1 76 51616 51691 [TGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAA] HWI-EAS406:6:66:722:1305#0 1 1 76 51617 51692 [CCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAA] HWI-EAS406:7:51:1116:1731#0 1 1 76 51619 51694 [CTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTAT] HWI-EAS406:6:58:303:1017#0 1 1 76 51624 51699 [TAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCA] HWI-EAS406:5:20:238:217#0 1 1 76 51626 51701 [TTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTC] HWI-EAS406:7:61:801:741#0 1 1 76 51629 51704 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:5:34:186:1817#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:6:50:1685:713#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:7:46:986:941#0 1 1 76 51643 51718 [GGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTT] HWI-EAS406:5:53:18:1405#0 1 1 76 51649 51724 [GTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTA] HWI-EAS406:6:66:358:148#0 1 1 76 51650 51725 [ATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT] HWI-EAS406:6:65:348:565#0 1 1 76 51655 51730 [CCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAAC] HWI-EAS406:5:45:738:957#0 1 1 76 51665 51740 [TTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCA] HWI-EAS406:6:38:975:65#0 1 1 76 51677 51752 [CATAGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATC] HWI-EAS406:6:48:1130:1880#0 1 1 76 51728 51803 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:5:48:881:559#0 1 1 76 51734 51809 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:7:49:622:558#0 1 1 76 51734 51809 [ACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTG] HWI-EAS406:7:54:742:672#0 1 1 76 51739 51814 [ATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTC] HWI-EAS406:5:44:1175:996#0 1 1 76 51743 51818 [TCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCG] HWI-EAS406:7:39:1740:231#0 1 1 76 51744 51819 [AAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACA] HWI-EAS406:6:46:1377:1168#0 1 1 76 51747 51822 [AATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAA] HWI-EAS406:7:64:25:503#0 1 1 76 51748 51823 [TCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATC] HWI-EAS406:5:4:309:1035#0 1 1 76 51750 51825 [GCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACT] HWI-EAS406:5:4:776:1060#0 1 1 76 51759 51834 [ACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTAC] HWI-EAS406:5:65:809:1514#0 1 1 76 51761 51836 [CTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACA] HWI-EAS406:5:60:1269:1183#0 1 1 76 51762 51837 [TAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAAC] HWI-EAS406:5:41:1628:1655#0 1 1 76 51764 51839 [GATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACAT] HWI-EAS406:6:33:424:176#0 1 1 76 51766 51841 [TAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTG] HWI-EAS406:5:61:1080:471#0 1 1 76 51769 51844 [TACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGA] HWI-EAS406:5:40:1290:1233#0 1 1 76 51777 51852 [CTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGC] HWI-EAS406:6:40:1036:2014#0 1 1 76 51779 51854 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:36:1245:927#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:52:297:1809#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:59:1054:1320#0 1 1 76 51780 51855 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:5:46:940:679#0 1 1 76 51781 51856 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:7:82:46:1850#0 1 1 76 51781 51856 [TCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAA] HWI-EAS406:7:30:584:783#0 1 1 76 51786 51861 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:3:1035:1388#0 1 1 76 51787 51862 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:30:1615:1913#0 1 1 76 51787 51862 [TCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAAC] HWI-EAS406:6:61:345:943#0 1 1 76 51788 51863 [CAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACT] HWI-EAS406:5:52:1113:1467#0 1 1 76 51789 51864 [AGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTC] HWI-EAS406:5:49:1366:809#0 1 1 76 51790 51865 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:5:83:566:978#0 1 1 76 51792 51867 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:6:44:1301:33#0 1 1 76 51792 51867 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1337:2008#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1338:2010#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:44:1177:1897#0 1 1 76 51793 51868 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:39:726:1083#0 1 1 76 51794 51869 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:90:1469:1403#0 1 1 76 51794 51869 [TTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC] HWI-EAS406:6:84:547:967#0 1 1 76 51795 51870 [GATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATC] HWI-EAS406:7:79:983:987#0 1 1 76 51798 51873 [CAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCG] HWI-EAS406:7:48:1134:1483#0 1 1 76 51807 51882 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:6:61:1073:816#0 1 1 76 51810 51885 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:7:44:468:1233#0 1 1 76 51810 51885 [CTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTT] HWI-EAS406:5:42:701:241#0 1 1 76 51812 51887 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:5:54:1071:668#0 1 1 76 51815 51890 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:7:57:1749:546#0 1 1 76 51815 51890 [TTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCA] HWI-EAS406:6:2:1018:1610#0 1 1 76 51816 51891 [CAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTC] HWI-EAS406:5:70:667:1808#0 1 1 76 51821 51896 [AATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCT] HWI-EAS406:5:66:1372:1962#0 1 1 76 51822 51897 [CTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAG] HWI-EAS406:5:46:306:950#0 1 1 76 51825 51900 [TCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTA] HWI-EAS406:5:12:265:1242#0 1 1 76 51827 51902 [TATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGA] HWI-EAS406:5:31:812:415#0 1 1 76 51829 51904 [ATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGAT] HWI-EAS406:5:50:1699:1414#0 1 1 76 51830 51905 [ACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTT] HWI-EAS406:7:95:127:1794#0 1 1 76 51832 51907 [ACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACAT] HWI-EAS406:7:44:537:1071#0 1 1 76 51838 51913 [TGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGA] HWI-EAS406:6:60:856:1143#0 1 1 76 51843 51918 [GTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGAT] HWI-EAS406:5:21:1482:1293#0 1 1 76 51844 51919 [CTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTT] HWI-EAS406:5:54:1701:560#0 1 1 76 51846 51921 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:5:86:48:1444#0 1 1 76 51847 51922 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:7:55:910:185#0 1 1 76 51847 51922 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:14:172:1797#0 1 1 76 51851 51926 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:60:333:510#0 1 1 76 51851 51926 [AGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCAC] HWI-EAS406:7:27:1164:411#0 1 1 76 51852 51927 [CCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTT] HWI-EAS406:7:61:206:1212#0 1 1 76 51854 51929 [CTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTG] HWI-EAS406:6:80:363:1516#0 1 1 76 51855 51930 [AAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTG] HWI-EAS406:7:7:1668:1334#0 1 1 76 51859 51934 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:152:1641#0 1 1 76 51865 51940 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:154:1642#0 1 1 76 51865 51940 [ACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTC] HWI-EAS406:6:62:315:1419#0 1 1 76 51869 51944 [AAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTT] HWI-EAS406:5:47:636:1051#0 1 1 76 51874 51949 [TTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTAT] HWI-EAS406:6:74:1253:670#0 1 1 76 51877 51952 [TGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATT] HWI-EAS406:5:25:997:1630#0 1 1 76 51878 51953 [GGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTT] HWI-EAS406:6:78:489:1142#0 1 1 76 51879 51954 [GCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCT] HWI-EAS406:5:34:1146:1143#0 1 1 76 51882 51957 [CCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTT] HWI-EAS406:7:62:1125:1571#0 1 1 76 51883 51958 [CGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTT] HWI-EAS406:5:93:591:1425#0 1 1 76 51884 51959 [TTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTG] HWI-EAS406:6:19:1597:771#0 1 1 76 51886 51961 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:6:43:608:993#0 1 1 76 51887 51962 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:7:13:332:1432#0 1 1 76 51887 51962 [GCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTT] HWI-EAS406:7:39:1330:1144#0 1 1 76 51888 51963 [CAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTAC] HWI-EAS406:7:73:713:226#0 1 1 76 51890 51965 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:52:564:1215#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:77:1015:272#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:2:735:995#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:67:1426:1561#0 1 1 76 51891 51966 [TTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGAT] HWI-EAS406:7:89:27:1856#0 1 1 76 51894 51969 [CTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTC] HWI-EAS406:7:88:159:600#0 1 1 76 51896 51971 [TGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCT] HWI-EAS406:6:47:520:1926#0 1 1 76 51897 51972 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:59:250:1202#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:63:300:431#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:80:1521:675#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:87:892:862#0 1 1 76 51898 51973 [GTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTT] HWI-EAS406:6:71:1176:442#0 1 1 76 51900 51975 [TTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCA] HWI-EAS406:5:82:1083:40#0 1 1 76 51906 51981 [GAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACC] HWI-EAS406:6:30:1392:410#0 1 1 76 51908 51983 [TTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCT] HWI-EAS406:6:53:894:1026#0 1 1 76 51913 51988 [GAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTT] HWI-EAS406:5:81:1562:328#0 1 1 76 51915 51990 [TAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAG] HWI-EAS406:6:79:1028:1016#0 1 1 76 51939 52014 [TCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGC] HWI-EAS406:5:33:751:478#0 1 1 76 51972 52047 [TCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCA] HWI-EAS406:5:52:433:445#0 1 1 76 51976 52051 [TCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGAC] HWI-EAS406:6:81:1602:1312#0 1 1 76 51979 52054 [CACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACA] HWI-EAS406:7:58:1056:909#0 1 1 76 51980 52055 [ACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACAT] HWI-EAS406:6:65:1550:1808#0 1 1 76 51981 52056 [CCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATC] HWI-EAS406:5:26:619:589#0 1 1 76 51982 52057 [TCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAG] HWI-EAS406:5:25:1540:854#0 1 1 76 51984 52059 [CCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGA] HWI-EAS406:6:44:729:758#0 1 1 76 51985 52060 [TAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTT] HWI-EAS406:7:72:764:515#0 1 1 76 51990 52065 [ATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAG] HWI-EAS406:6:26:987:409#0 1 1 76 51992 52067 [TCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGA] HWI-EAS406:5:59:1498:1758#0 1 1 76 51993 52068 [CTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAG] HWI-EAS406:6:43:26:349#0 1 1 76 51994 52069 [TACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGA] HWI-EAS406:6:4:373:1470#0 1 1 76 51995 52070 [AGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAG] HWI-EAS406:5:79:571:1802#0 1 1 76 51998 52073 [GGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGA] HWI-EAS406:7:1:743:1712#0 1 1 76 51999 52074 [TGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGT] HWI-EAS406:7:33:502:813#0 1 1 76 52001 52076 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:6:74:1764:1670#0 1 1 76 52002 52077 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:7:27:1272:939#0 1 1 76 52002 52077 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:30:1002:764#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:86:1501:1809#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:6:95:1326:856#0 1 1 76 52005 52080 [GAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCT] HWI-EAS406:5:10:1349:1560#0 1 1 76 52006 52081 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:5:39:597:1883#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:36:536:1898#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:68:1133:1558#0 1 1 76 52007 52082 [ACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAG] HWI-EAS406:5:78:1629:923#0 1 1 76 52008 52083 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:5:64:51:2029#0 1 1 76 52009 52084 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:6:83:1173:1390#0 1 1 76 52009 52084 [TTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAA] HWI-EAS406:5:40:882:1796#0 1 1 76 52010 52085 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:5:88:516:1281#0 1 1 76 52012 52087 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:6:64:491:681#0 1 1 76 52012 52087 [AGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATA] HWI-EAS406:7:84:1212:1365#0 1 1 76 52013 52088 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:5:40:222:1844#0 1 1 76 52014 52089 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:7:72:699:1313#0 1 1 76 52014 52089 [GAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGA] HWI-EAS406:6:64:307:369#0 1 1 76 52015 52090 [AGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAA] HWI-EAS406:6:60:133:1637#0 1 1 76 52016 52091 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:5:75:1124:1493#0 1 1 76 52017 52092 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:6:56:587:1464#0 1 1 76 52017 52092 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:5:35:1653:2022#0 1 1 76 52018 52093 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:7:68:517:1165#0 1 1 76 52018 52093 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:16:1056:1081#0 1 1 76 52020 52095 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:19:1121:357#0 1 1 76 52020 52095 [GGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAG] HWI-EAS406:7:34:419:1654#0 1 1 76 52022 52097 [TCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAA] HWI-EAS406:6:73:130:1926#0 1 1 76 52024 52099 [CCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAG] HWI-EAS406:6:8:582:399#0 1 1 76 52025 52100 [CATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGA] HWI-EAS406:6:89:579:160#0 1 1 76 52026 52101 [ATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAG] HWI-EAS406:6:41:580:1400#0 1 1 76 52027 52102 [TCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGC] HWI-EAS406:5:17:398:669#0 1 1 76 52028 52103 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:6:84:1266:1109#0 1 1 76 52029 52104 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:7:5:999:1547#0 1 1 76 52029 52104 [AAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAA] HWI-EAS406:5:14:148:1373#0 1 1 76 52030 52105 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:2:1699:806#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:45:1130:1897#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:6:46:377:1707#0 1 1 76 52031 52106 [CCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAG] HWI-EAS406:7:48:1774:327#0 1 1 76 52033 52108 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:5:12:1301:601#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:7:1601:2011#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:64:508:1598#0 1 1 76 52036 52111 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:5:1694:223#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:47:902:645#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:70:1378:1151#0 1 1 76 52037 52112 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:5:10:1713:1450#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:6:59:183:1429#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:7:72:1029:862#0 1 1 76 52039 52114 [ATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGC] HWI-EAS406:5:73:1557:501#0 1 1 76 52043 52118 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:5:32:315:118#0 1 1 76 52046 52121 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:7:22:1366:1478#0 1 1 76 52046 52121 [CTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAG] HWI-EAS406:7:11:1474:1191#0 1 1 76 52047 52122 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:6:78:12:1461#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:5:1068:1061#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:33:1476:1754#0 1 1 76 52048 52123 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:5:9:1339:499#0 1 1 76 52049 52124 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:6:30:958:346#0 1 1 76 52049 52124 [CAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATT] HWI-EAS406:7:65:1412:1398#0 1 1 76 52050 52125 [AGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTG] HWI-EAS406:6:22:214:1178#0 1 1 76 52051 52126 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:6:70:161:1056#0 1 1 76 52054 52129 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:7:18:1536:1583#0 1 1 76 52054 52129 [ATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTA] HWI-EAS406:6:46:1138:842#0 1 1 76 52055 52130 [CAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACT] HWI-EAS406:5:27:303:1774#0 1 1 76 52057 52132 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:5:12:1404:854#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:6:54:1784:1747#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:7:35:720:1415#0 1 1 76 52058 52133 [GAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGA] HWI-EAS406:5:23:1243:48#0 1 1 76 52059 52134 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:18:1525:653#0 1 1 76 52060 52135 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:40:245:523#0 1 1 76 52060 52135 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:5:35:477:859#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:12:1141:652#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:73:1171:1047#0 1 1 76 52061 52136 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:5:17:517:1752#0 1 1 76 52062 52137 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:6:95:231:1845#0 1 1 76 52062 52137 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:5:67:1358:1820#0 1 1 76 52063 52138 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:7:100:638:523#0 1 1 76 52063 52138 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:6:71:494:1059#0 1 1 76 52064 52139 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:7:79:1404:1143#0 1 1 76 52064 52139 [TAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGG] HWI-EAS406:5:91:969:722#0 1 1 76 52065 52140 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:5:37:1425:906#0 1 1 76 52066 52141 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:7:68:1118:1565#0 1 1 76 52066 52141 [GAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAG] HWI-EAS406:5:20:211:742#0 1 1 76 52067 52142 [AGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGA] HWI-EAS406:7:61:827:2#0 1 1 76 52068 52143 [GAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGAC] HWI-EAS406:7:65:1213:1604#0 1 1 76 52069 52144 [GTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT] HWI-EAS406:7:17:207:1549#0 1 1 76 52075 52150 [TGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAA] HWI-EAS406:5:73:656:1860#0 1 1 76 52078 52153 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:6:54:1183:1352#0 1 1 76 52079 52154 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:7:37:993:682#0 1 1 76 52079 52154 [CTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAA] HWI-EAS406:7:74:1122:1374#0 1 1 76 52080 52155 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:6:94:713:1830#0 1 1 76 52081 52156 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:7:9:1499:1250#0 1 1 76 52081 52156 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:65:1142:350#0 1 1 76 52083 52158 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:88:1031:1762#0 1 1 76 52083 52158 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:20:950:1457#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:48:827:2014#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:72:1667:1616#0 1 1 76 52084 52159 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:5:93:525:195#0 1 1 76 52085 52160 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:7:32:1304:195#0 1 1 76 52085 52160 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:5:2:1649:1295#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:6:33:800:1496#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:7:85:342:1989#0 1 1 76 52087 52162 [AGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGC] HWI-EAS406:7:70:1503:1950#0 1 1 76 52088 52163 [GAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCG] HWI-EAS406:7:72:1172:170#0 1 1 76 52089 52164 [AAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGA] HWI-EAS406:5:60:842:1890#0 1 1 76 52090 52165 [AGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAG] HWI-EAS406:5:67:1293:1622#0 1 1 76 52091 52166 [GAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGC] HWI-EAS406:7:4:588:842#0 1 1 76 52092 52167 [AGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCA] HWI-EAS406:6:29:322:1841#0 1 1 76 52093 52168 [GAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAG] HWI-EAS406:7:15:1792:478#0 1 1 76 52094 52169 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:7:1030:1738#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:41:708:742#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:70:671:1443#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:59:1396:1065#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:76:508:213#0 1 1 76 52095 52170 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:5:38:507:1944#0 1 1 76 52096 52171 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:7:68:957:1437#0 1 1 76 52096 52171 [GAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTC] HWI-EAS406:6:25:726:1823#0 1 1 76 52097 52172 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:6:20:1401:1637#0 1 1 76 52098 52173 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:7:81:1000:1464#0 1 1 76 52098 52173 [AGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGA] HWI-EAS406:5:14:933:1952#0 1 1 76 52099 52174 [GAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGAT] HWI-EAS406:5:30:760:323#0 1 1 76 52100 52175 [CAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCA] HWI-EAS406:6:27:61:873#0 1 1 76 52103 52178 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:24:633:991#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:92:467:1920#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:100:519:398#0 1 1 76 52106 52181 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:26:697:1150#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:31:181:887#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:7:10:575:1888#0 1 1 76 52107 52182 [GGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGC] HWI-EAS406:5:73:1149:233#0 1 1 76 52108 52183 [GCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCA] HWI-EAS406:5:55:1257:1795#0 1 1 76 52109 52184 [CTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCAC] HWI-EAS406:6:65:1394:866#0 1 1 76 52110 52185 [TCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACT] HWI-EAS406:5:64:1536:142#0 1 1 76 52111 52186 [ACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTA] HWI-EAS406:6:94:552:341#0 1 1 76 52113 52188 [TTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACG] HWI-EAS406:5:92:1176:518#0 1 1 76 52115 52190 [CAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACC] HWI-EAS406:6:93:1111:754#0 1 1 76 52118 52193 [AGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCG] HWI-EAS406:7:8:1159:1896#0 1 1 76 52119 52194 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:5:80:570:6#0 1 1 76 52121 52196 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:7:18:1662:1508#0 1 1 76 52121 52196 [GATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCC] HWI-EAS406:5:6:168:1581#0 1 1 76 52122 52197 [TTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCA] HWI-EAS406:7:18:1237:879#0 1 1 76 52124 52199 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:3:1517:359#0 1 1 76 52125 52200 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:47:1298:719#0 1 1 76 52125 52200 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:5:27:1331:1024#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:25:283:1331#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:100:833:1685#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:7:100:1443:529#0 1 1 76 52129 52204 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:6:54:764:946#0 1 1 76 52130 52205 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:7:53:686:1832#0 1 1 76 52130 52205 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:56:623:1125#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:86:174:1312#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:6:64:1283:110#0 1 1 76 52131 52206 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:5:87:981:221#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:48:1199:1626#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:67:691:878#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:73:1090:1807#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:7:13:1294:1416#0 1 1 76 52132 52207 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:5:83:1077:920#0 1 1 76 52134 52209 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:6:64:465:861#0 1 1 76 52134 52209 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:5:67:422:1731#0 1 1 76 52138 52213 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:7:34:1113:408#0 1 1 76 52138 52213 [GGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATA] HWI-EAS406:7:13:139:1696#0 1 1 76 52139 52214 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:15:890:3#0 1 1 76 52140 52215 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:28:1255:1618#0 1 1 76 52140 52215 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:5:59:1773:1125#0 1 1 76 52142 52217 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:6:10:1600:1789#0 1 1 76 52142 52217 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:10:430:902#0 1 1 76 52143 52218 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:31:579:224#0 1 1 76 52143 52218 [CATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTG] HWI-EAS406:7:65:1779:423#0 1 1 76 52144 52219 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:5:27:1246:1460#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:38:426:1977#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:39:1537:1000#0 1 1 76 52145 52220 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:19:1617:1113#0 1 1 76 52147 52222 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:64:1133:462#0 1 1 76 52147 52222 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:5:10:1084:1542#0 1 1 76 52148 52223 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:6:36:1502:1446#0 1 1 76 52148 52223 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:21:1461:1189#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:86:1317:698#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:23:1288:392#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:88:1084:268#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:7:2:715:1936#0 1 1 76 52149 52224 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:5:89:1196:1698#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:8:962:500#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:22:86:1843#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:65:1076:100#0 1 1 76 52150 52225 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:31:1000:1428#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:83:1606:783#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:24:1405:1720#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:86:412:478#0 1 1 76 52151 52226 [AAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGA] HWI-EAS406:7:45:921:1899#0 1 1 76 52153 52228 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:18:1405:416#0 1 1 76 52154 52229 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:77:898:1160#0 1 1 76 52154 52229 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:5:69:705:951#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:6:59:917:2034#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:7:9:781:1662#0 1 1 76 52156 52231 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:5:71:400:921#0 1 1 76 52157 52232 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:7:67:181:1796#0 1 1 76 52157 52232 [AACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACC] HWI-EAS406:6:27:521:1119#0 1 1 76 52158 52233 [ACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCC] HWI-EAS406:5:71:343:664#0 1 1 76 52159 52234 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:5:39:281:1500#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:6:74:1508:965#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:7:9:1222:1239#0 1 1 76 52160 52235 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:78:223:715#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:84:1052:218#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:17:484:1798#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:53:1251:1786#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:63:1270:309#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:79:386:1740#0 1 1 76 52161 52236 [GCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCT] HWI-EAS406:7:84:1292:1968#0 1 1 76 52162 52237 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:17:1646:1076#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:85:1195:1727#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:66:1164:987#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:81:1119:760#0 1 1 76 52163 52238 [AGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTG] HWI-EAS406:5:18:780:281#0 1 1 76 52165 52240 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:6:73:1413:1743#0 1 1 76 52166 52241 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:7:16:1149:400#0 1 1 76 52166 52241 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:5:57:651:1240#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:39:1129:669#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:73:857:713#0 1 1 76 52167 52242 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:5:85:1122:1536#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:77:576:1127#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:88:9:511#0 1 1 76 52169 52244 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:6:69:1740:1649#0 1 1 76 52172 52247 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:7:33:131:1634#0 1 1 76 52172 52247 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:5:73:54:1105#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:6:83:1007:1328#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:24:1321:2010#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:33:262:1157#0 1 1 76 52173 52248 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:5:32:335:1336#0 1 1 76 52174 52249 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:7:92:1537:1436#0 1 1 76 52174 52249 [TCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACA] HWI-EAS406:6:39:815:1207#0 1 1 76 52175 52250 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:5:46:793:1726#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:12:251:705#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:31:1436:1202#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:62:333:1365#0 1 1 76 52176 52251 [CATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAAC] HWI-EAS406:5:23:1574:1413#0 1 1 76 52177 52252 [ATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACT] HWI-EAS406:7:40:531:470#0 1 1 76 52178 52253 [TTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTT] HWI-EAS406:7:45:1616:849#0 1 1 76 52179 52254 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:6:92:1396:1272#0 1 1 76 52180 52255 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:7:26:833:1510#0 1 1 76 52180 52255 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:16:1380:1086#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:59:1530:1196#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:87:1126:429#0 1 1 76 52181 52256 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:24:1147:1664#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:50:815:1716#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:59:938:1038#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:6:24:422:883#0 1 1 76 52182 52257 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:5:22:1548:492#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:70:166:1464#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:74:652:283#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:82:460:1457#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:7:11:567:915#0 1 1 76 52184 52259 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:5:75:1704:1180#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:6:76:954:1728#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:7:85:664:780#0 1 1 76 52186 52261 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:6:61:1372:634#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:13:523:1416#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:17:797:359#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:48:709:1660#0 1 1 76 52187 52262 [CGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAA] HWI-EAS406:6:88:356:1840#0 1 1 76 52189 52264 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:5:76:727:1411#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:6:20:1545:1827#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:7:53:143:1483#0 1 1 76 52190 52265 [ACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATC] HWI-EAS406:5:90:738:799#0 1 1 76 52191 52266 [CCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCA] HWI-EAS406:7:88:1091:992#0 1 1 76 52192 52267 [CGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAG] HWI-EAS406:5:58:545:1977#0 1 1 76 52193 52268 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:5:97:592:546#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:19:774:1380#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:100:531:1821#0 1 1 76 52194 52269 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:6:569:1398#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:14:421:609#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:46:1004:1159#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:11:647:1264#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:40:521:1504#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:7:89:1047:871#0 1 1 76 52196 52271 [CCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACT] HWI-EAS406:6:51:982:888#0 1 1 76 52197 52272 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:5:25:136:113#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:41:735:977#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:80:329:1778#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:7:82:1261:1408#0 1 1 76 52198 52273 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:54:1022:1658#0 1 1 76 52200 52275 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:99:1131:851#0 1 1 76 52200 52275 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:2:135:1661#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:7:866:337#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:64:463:1458#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:5:1647:1482#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:84:176:462#0 1 1 76 52201 52276 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:5:34:505:1686#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:6:1746:427#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:25:1017:1385#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:7:35:1369:1740#0 1 1 76 52202 52277 [TTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAA] HWI-EAS406:5:51:532:1851#0 1 1 76 52203 52278 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:6:12:128:1246#0 1 1 76 52206 52281 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:7:87:839:52#0 1 1 76 52206 52281 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:17:760:1366#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:37:901:1209#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:7:80:963:1384#0 1 1 76 52208 52283 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:5:17:1550:1566#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:53:1580#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:65:1000#0 1 1 76 52209 52284 [TCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATC] HWI-EAS406:5:78:758:151#0 1 1 76 52210 52285 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:44:902:842#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:90:598:451#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:6:87:265:605#0 1 1 76 52211 52286 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:6:40:974:965#0 1 1 76 52212 52287 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:7:24:1732:457#0 1 1 76 52212 52287 [TAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAG] HWI-EAS406:7:6:88:1716#0 1 1 76 52213 52288 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:16:939:403#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:57:458:1574#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:58:1137:1204#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:7:83:260:373#0 1 1 76 52214 52289 [TGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAA] HWI-EAS406:5:29:552:681#0 1 1 76 52218 52293 [GGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACA] HWI-EAS406:7:52:1630:1850#0 1 1 76 52220 52295 [AATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAG] HWI-EAS406:7:1:673:233#0 1 1 76 52222 52297 [TCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTA] HWI-EAS406:7:60:720:349#0 1 1 76 52224 52299 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:5:37:1471:715#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:6:87:1099:551#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:32:296:209#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:34:730:917#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:40:1079:1925#0 1 1 76 52225 52300 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:5:28:502:1523#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:11:1160:1199#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:23:620:280#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:5:406:1479#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:23:1311:329#0 1 1 76 52227 52302 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:5:59:154:1118#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:6:4:1519:1520#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:7:13:1280:1416#0 1 1 76 52230 52305 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:34:1624:1554#0 1 1 76 52231 52306 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:64:291:995#0 1 1 76 52231 52306 [CCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTT] HWI-EAS406:5:29:1240:1061#0 1 1 76 52233 52308 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:54:1258:578#0 1 1 76 52234 52309 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:71:1016:982#0 1 1 76 52234 52309 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:5:82:1040:1850#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:23:1181:492#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:76:1486:1891#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:7:52:643:2006#0 1 1 76 52236 52311 [GTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTC] HWI-EAS406:5:67:876:1061#0 1 1 76 52238 52313 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:6:99:364:1232#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:14:1418:1067#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:39:427:1772#0 1 1 76 52240 52315 [GCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAG] HWI-EAS406:5:35:1482:512#0 1 1 76 52241 52316 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:5:12:711:509#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:6:22:715:265#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:7:98:1452:2014#0 1 1 76 52242 52317 [AGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAG] HWI-EAS406:5:11:996:1746#0 1 1 76 52243 52318 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:86:758:1262#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:98:1007:1105#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:34:441:1191#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:83:773:524#0 1 1 76 52245 52320 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:6:23:1360:584#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:65:1518:1039#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:78:1116:1370#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:97:810:1277#0 1 1 76 52246 52321 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:30:537:400#0 1 1 76 52247 52322 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:43:275:744#0 1 1 76 52247 52322 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:5:13:919:1120#0 1 1 76 52248 52323 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:6:25:1022:1875#0 1 1 76 52248 52323 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:1:1367:996#0 1 1 76 52249 52324 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:14:1324:228#0 1 1 76 52249 52324 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:5:5:821:1497#0 1 1 76 52250 52325 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:7:6:193:1715#0 1 1 76 52250 52325 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:5:78:433:497#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:6:52:591:654#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:35:1338:991#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:56:524:1938#0 1 1 76 52251 52326 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:6:68:1629:2018#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:21:978:238#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:64:586:999#0 1 1 76 52252 52327 [TTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTG] HWI-EAS406:6:47:1172:963#0 1 1 76 52253 52328 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:11:1163:662#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:36:494:638#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:7:70:268:1648#0 1 1 76 52254 52329 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:7:1315:1936#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:29:913:1247#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:61:740:1158#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:6:5:187:357#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:4:282:595#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:12:213:2011#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:78:1244:1499#0 1 1 76 52255 52330 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:62:1474:1477#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:73:667:2#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:29:1569:1233#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:61:153:379#0 1 1 76 52256 52331 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:5:90:921:863#0 1 1 76 52257 52332 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:7:31:409:762#0 1 1 76 52257 52332 [GATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCAC] HWI-EAS406:5:45:1329:265#0 1 1 76 52258 52333 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:5:84:1096:658#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:6:76:1047:245#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:18:1148:2023#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:58:1579:1747#0 1 1 76 52259 52334 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:13:590:1308#0 1 1 76 52260 52335 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:71:1211:959#0 1 1 76 52260 52335 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:48:774:839#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:64:134:629#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:7:40:1581:1123#0 1 1 76 52261 52336 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:17:691:1717#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:31:1311:911#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:71:1388:1286#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:15:1153:993#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:69:684:116#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:79:930:176#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:7:16:681:551#0 1 1 76 52262 52337 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:6:83:1596:302#0 1 1 76 52263 52338 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:7:38:1664:916#0 1 1 76 52263 52338 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:5:7:1046:440#0 1 1 76 52264 52339 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:6:37:1487:1516#0 1 1 76 52264 52339 [TCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACA] HWI-EAS406:7:8:666:1502#0 1 1 76 52265 52340 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:25:334:146#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:38:1366:1989#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:52:746:552#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:53:1240:1041#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:68:1437:1987#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:85:323:1728#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:93:1121:225#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:11:1389:1554#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:49:1419:608#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:71:1174:1073#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:7:75:951:1345#0 1 1 76 52266 52341 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:15:947:1923#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:17:1464:1199#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:13:943:1893#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:71:346:1276#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:93:161:1371#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:94:1100:882#0 1 1 76 52267 52342 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:5:86:281:653#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:19:674:714#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:48:1353:1724#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:7:29:1542:1037#0 1 1 76 52268 52343 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:5:86:810:1629#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:34:1378:1501#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:64:183:1239#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:7:22:450:1492#0 1 1 76 52269 52344 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:5:14:1646:1734#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:6:83:1746:217#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:49:522:970#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:84:887:295#0 1 1 76 52270 52345 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:5:49:1017:1244#0 1 1 76 52271 52346 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:7:80:842:1267#0 1 1 76 52271 52346 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:23:629:1683#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:60:1493:1305#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:68:630:343#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:28:1402:643#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:68:300:1753#0 1 1 76 52272 52347 [CCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGAC] HWI-EAS406:7:77:1303:1334#0 1 1 76 52273 52348 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:24:1412:1968#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:87:579:655#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:7:59:1571:1671#0 1 1 76 52274 52349 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:27:888:654#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:44:1426:967#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:6:9:915:1768#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:43:1353:349#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:57:923:841#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:80:1425:1717#0 1 1 76 52276 52351 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:4:195:1410#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:10:640:255#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:53:346:769#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:7:85:1068:1802#0 1 1 76 52277 52352 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:5:7:123:677#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:6:91:376:1230#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:7:61:1752:1817#0 1 1 76 52278 52353 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:52:527:1818#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:98:806:313#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:21:1167:455#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:50:1317:1946#0 1 1 76 52279 52354 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:6:96:484:1269#0 1 1 76 52280 52355 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:7:52:1223:1795#0 1 1 76 52280 52355 [GATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGT] HWI-EAS406:6:62:601:1096#0 1 1 76 52282 52357 [ATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTG] HWI-EAS406:7:40:673:1073#0 1 1 76 52283 52358 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:28:714:1051#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:46:1063:1975#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:6:36:660:431#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:7:6:1104:1516#0 1 1 76 52284 52359 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:3:1687:1148#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:92:222:1451#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:54:1624:322#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:77:293:1567#0 1 1 76 52285 52360 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:5:15:1334:1117#0 1 1 76 52286 52361 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:6:95:1198:1326#0 1 1 76 52286 52361 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:13:1280:1125#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:30:1591:708#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:37:976:1723#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:24:1169:1420#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:95:251:372#0 1 1 76 52287 52362 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:5:55:1530:1535#0 1 1 76 52288 52363 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:6:59:506:348#0 1 1 76 52288 52363 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:5:79:394:1921#0 1 1 76 52290 52365 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:6:36:739:479#0 1 1 76 52290 52365 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:5:59:301:1567#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:6:1691:1668#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:89:544:1361#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:36:845:1416#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:78:917:801#0 1 1 76 52292 52367 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:5:78:1278:1860#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:6:30:59:1461#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:7:19:811:1021#0 1 1 76 52293 52368 [CAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAA] HWI-EAS406:7:38:1739:351#0 1 1 76 52294 52369 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:39:1693:773#0 1 1 76 52296 52371 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:72:1492:975#0 1 1 76 52296 52371 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:9:513:554#0 1 1 76 52297 52372 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:80:1083:780#0 1 1 76 52297 52372 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:5:1:896:595#0 1 1 76 52298 52373 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:7:67:565:904#0 1 1 76 52298 52373 [ATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAA] HWI-EAS406:5:74:1730:1358#0 1 1 76 52299 52374 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:24:498:151#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:33:1187:650#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:89:327:810#0 1 1 76 52300 52375 [CATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATG] HWI-EAS406:7:11:955:1706#0 1 1 76 52301 52376 [ATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGG] HWI-EAS406:5:1:1774:1615#0 1 1 76 52302 52377 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:79:357:290#0 1 1 76 52303 52378 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:86:1242:822#0 1 1 76 52303 52378 [GGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTG] HWI-EAS406:5:5:1401:1725#0 1 1 76 52304 52379 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:70:1431:96#0 1 1 76 52305 52380 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:83:1673:880#0 1 1 76 52305 52380 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:54:954:1475#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:79:159:1997#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:7:91:139:1980#0 1 1 76 52306 52381 [TTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGT] HWI-EAS406:7:84:983:1321#0 1 1 76 52307 52382 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:5:79:1745:1147#0 1 1 76 52308 52383 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:6:22:1189:680#0 1 1 76 52308 52383 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:21:547:416#0 1 1 76 52309 52384 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:92:1137:1402#0 1 1 76 52309 52384 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:6:785:515#0 1 1 76 52310 52385 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:72:1490:50#0 1 1 76 52310 52385 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:43:1006:992#0 1 1 76 52311 52386 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:56:1090:611#0 1 1 76 52311 52386 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:24:233:961#0 1 1 76 52312 52387 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:95:972:973#0 1 1 76 52312 52387 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:5:17:303:965#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:14:1260:460#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:30:551:90#0 1 1 76 52313 52388 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:5:37:1278:1788#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:33:930:1428#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:62:1218:840#0 1 1 76 52314 52389 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:64:270:680#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:75:1545:33#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:11:1735:332#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:54:496:1518#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:56:778:387#0 1 1 76 52315 52390 [AGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGC] HWI-EAS406:6:94:1246:1663#0 1 1 76 52317 52392 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:6:42:1509:946#0 1 1 76 52319 52394 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:7:50:929:653#0 1 1 76 52319 52394 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:6:61:1298:1596#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:52:717:1780#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:76:1646:1467#0 1 1 76 52320 52395 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:6:66:392:1831#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:76:668:942#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:79:214:1087#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:99:685:562#0 1 1 76 52322 52397 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:78:1623:1950#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:85:1401:153#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:6:37:1677:1094#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:53:617:1394#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:60:92:692#0 1 1 76 52323 52398 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:66:1756:1393#0 1 1 76 52324 52399 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:99:386:1047#0 1 1 76 52324 52399 [TTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCT] HWI-EAS406:7:65:383:1927#0 1 1 76 52326 52401 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:4:654:477#0 1 1 76 52327 52402 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:71:185:1268#0 1 1 76 52327 52402 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:5:9:857:1601#0 1 1 76 52328 52403 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:6:87:352:1381#0 1 1 76 52328 52403 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:62:1384:1693#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:99:1383:725#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:7:15:993:1349#0 1 1 76 52329 52404 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:5:86:1430:15#0 1 1 76 52330 52405 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:6:68:792:418#0 1 1 76 52330 52405 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:14:1447:825#0 1 1 76 52331 52406 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:15:1080:1881#0 1 1 76 52331 52406 [ACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCT] HWI-EAS406:5:15:1215:481#0 1 1 76 52332 52407 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:5:19:722:1722#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:6:18:963:285#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:7:49:628:1029#0 1 1 76 52333 52408 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:35:1298:1838#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:37:496:730#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:17:1341:371#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:46:1262:1804#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:48:776:786#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:26:623:605#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:82:1533:327#0 1 1 76 52334 52409 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:5:71:648:1749#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:6:1574:1798#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:98:1452:1598#0 1 1 76 52335 52410 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:20:291:1335#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:26:813:679#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:76:1715:954#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:82:1081:1905#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:83:672:1351#0 1 1 76 52336 52411 [GACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCC] HWI-EAS406:6:26:79:1984#0 1 1 76 52337 52412 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:8:1766:1437#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:48:517:851#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:38:1169:1242#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:48:713:1735#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:7:73:1464:1506#0 1 1 76 52338 52413 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:5:6:196:217#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:12:911:698#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:62:1681:703#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:82:724:1281#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:54:940:1383#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:76:1666:962#0 1 1 76 52340 52415 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:5:65:411:1394#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:6:35:519:177#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:7:83:606:14#0 1 1 76 52341 52416 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:6:37:1476:639#0 1 1 76 52342 52417 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:7:65:672:108#0 1 1 76 52342 52417 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:45:282:1760#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:80:1605:805#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:38:196:252#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:55:1424:1623#0 1 1 76 52343 52418 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:5:4:820:1980#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:33:617:236#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:76:1431:640#0 1 1 76 52344 52419 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:63:689:473#0 1 1 76 52346 52421 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:82:1672:1506#0 1 1 76 52346 52421 [ACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTT] HWI-EAS406:7:87:1378:1986#0 1 1 76 52347 52422 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:6:18:104:1732#0 1 1 76 52348 52423 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:7:85:742:826#0 1 1 76 52348 52423 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:78:277:975#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:86:1514:1063#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:98:1616:938#0 1 1 76 52349 52424 [GCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGG] HWI-EAS406:5:53:372:990#0 1 1 76 52350 52425 [CTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGG] HWI-EAS406:7:88:322:659#0 1 1 76 52351 52426 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:80:77:1738#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:99:1630:380#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:7:28:15:1735#0 1 1 76 52352 52427 [ACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGA] HWI-EAS406:7:2:976:627#0 1 1 76 52353 52428 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:5:60:513:1239#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:6:77:603:1284#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:28:570:1220#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:52:511:1590#0 1 1 76 52354 52429 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:2:1424:581#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:30:673:873#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:70:1713:1317#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:83:833:377#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:7:8:368:1271#0 1 1 76 52355 52430 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:5:49:452:1791#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:6:66:1354:1650#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:7:67:1470:1467#0 1 1 76 52356 52431 [GGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGC] HWI-EAS406:7:57:1013:941#0 1 1 76 52359 52434 [GTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCA] HWI-EAS406:6:22:1141:882#0 1 1 76 52360 52435 [TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCAC] HWI-EAS406:7:86:123:1529#0 1 1 76 52361 52436 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:5:60:1506:520#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:6:53:1668:1315#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:42:853:1654#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:45:987:603#0 1 1 76 52362 52437 [GTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGT] HWI-EAS406:7:39:1343:1585#0 1 1 76 52363 52438 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:5:63:9:408#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:23:683:1669#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:33:330:1673#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:56:1406:957#0 1 1 76 52365 52440 [AAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTG] HWI-EAS406:7:16:1679:536#0 1 1 76 52368 52443 [AACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGG] HWI-EAS406:5:90:999:2029#0 1 1 76 52369 52444 [ACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGG] HWI-EAS406:7:11:1490:1402#0 1 1 76 52370 52445 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:5:38:1343:184#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:6:21:1412:1644#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:2:1141:279#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:93:349:1860#0 1 1 76 52371 52446 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:5:83:994:1882#0 1 1 76 52372 52447 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:6:77:942:1146#0 1 1 76 52372 52447 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:5:82:1760:1734#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:32:555:593#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:99:160:1579#0 1 1 76 52373 52448 [ATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAA] HWI-EAS406:5:6:1045:336#0 1 1 76 52374 52449 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:5:40:1182:762#0 1 1 76 52375 52450 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:7:45:1790:2027#0 1 1 76 52375 52450 [TGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCT] HWI-EAS406:6:30:1244:1033#0 1 1 76 52378 52453 [TGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCT] HWI-EAS406:6:25:672:873#0 1 1 76 52380 52455 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:6:15:850:569#0 1 1 76 52381 52456 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:7:82:1566:1600#0 1 1 76 52381 52456 [TCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTAC] HWI-EAS406:5:96:993:668#0 1 1 76 52382 52457 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:5:1335:234#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:8:634:1148#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:48:1364:606#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:83:286:788#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:6:46:1265:853#0 1 1 76 52383 52458 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:6:97:1422:276#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:30:1373:1336#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:91:1638:634#0 1 1 76 52384 52459 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:6:30:1107:1555#0 1 1 76 52385 52460 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:7:62:403:725#0 1 1 76 52385 52460 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:6:97:210:575#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:8:768:1918#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:18:744:577#0 1 1 76 52389 52464 [TGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGAC] HWI-EAS406:6:12:1033:288#0 1 1 76 52390 52465 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:44:1286:914#0 1 1 76 52391 52466 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:99:75:238#0 1 1 76 52391 52466 [CTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCC] HWI-EAS406:7:25:1534:1288#0 1 1 76 52393 52468 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:5:92:1021:315#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:6:22:939:1557#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:7:42:1700:1551#0 1 1 76 52395 52470 [AAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATC] HWI-EAS406:5:99:281:1040#0 1 1 76 52396 52471 [TCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTAC] HWI-EAS406:5:22:934:1120#0 1 1 76 52401 52476 [CAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACT] HWI-EAS406:6:72:438:93#0 1 1 76 52402 52477 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:5:44:953:153#0 1 1 76 52404 52479 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:7:92:1274:1315#0 1 1 76 52404 52479 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:13:34:1242#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:85:208:1122#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:7:43:587:413#0 1 1 76 52406 52481 [TATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGA] HWI-EAS406:6:47:845:736#0 1 1 76 52407 52482 [TTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATG] HWI-EAS406:7:90:897:1890#0 1 1 76 52409 52484 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:5:50:917:1976#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:6:46:1501:1311#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:35:1049:1828#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:91:943:1527#0 1 1 76 52410 52485 [CCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGAC] HWI-EAS406:5:79:515:1833#0 1 1 76 52411 52486 [CCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACT] HWI-EAS406:6:53:1426:1923#0 1 1 76 52412 52487 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:4:316:253#0 1 1 76 52413 52488 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:26:157:281#0 1 1 76 52413 52488 [TTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCA] HWI-EAS406:5:69:281:1963#0 1 1 76 52415 52490 [TCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAA] HWI-EAS406:5:26:250:604#0 1 1 76 52416 52491 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:33:965:904#0 1 1 76 52418 52493 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:34:525:990#0 1 1 76 52418 52493 [CTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAA] HWI-EAS406:7:88:734:166#0 1 1 76 52419 52494 [TTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAG] HWI-EAS406:7:36:631:1873#0 1 1 76 52421 52496 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:12:1159:384#0 1 1 76 52422 52497 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:83:1161:1426#0 1 1 76 52422 52497 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:6:90:771:1361#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:41:910:1083#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:70:99:1689#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:77:1174:839#0 1 1 76 52423 52498 [GGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT] HWI-EAS406:7:63:1480:724#0 1 1 76 52425 52500 [GGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTC] HWI-EAS406:7:77:1453:1511#0 1 1 76 52426 52501 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:6:26:1732:1025#0 1 1 76 52427 52502 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:7:97:947:1880#0 1 1 76 52427 52502 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:6:35:171:1900#0 1 1 76 52428 52503 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:7:88:334:545#0 1 1 76 52428 52503 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:5:66:1234:1609#0 1 1 76 52429 52504 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:7:92:1680:921#0 1 1 76 52429 52504 [AAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGG] HWI-EAS406:7:52:1570:713#0 1 1 76 52430 52505 [AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGA] HWI-EAS406:5:32:715:488#0 1 1 76 52431 52506 [GGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAG] HWI-EAS406:5:9:811:1156#0 1 1 76 52432 52507 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:45:1657:1532#0 1 1 76 52435 52510 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:98:1786:481#0 1 1 76 52435 52510 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:5:68:760:968#0 1 1 76 52436 52511 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:6:68:1440:1647#0 1 1 76 52436 52511 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:6:46:903:1877#0 1 1 76 52437 52512 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:7:19:367:1436#0 1 1 76 52437 52512 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:5:66:28:1446#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:6:34:464:783#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:7:15:604:1090#0 1 1 76 52438 52513 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:13:348:1033#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:87:1295:1803#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:7:64:1047:978#0 1 1 76 52439 52514 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:5:16:182:749#0 1 1 76 52440 52515 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:6:24:199:363#0 1 1 76 52440 52515 [GTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTC] HWI-EAS406:6:16:164:1853#0 1 1 76 52441 52516 [TGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCT] HWI-EAS406:5:43:513:1459#0 1 1 76 52442 52517 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:6:21:1418:1301#0 1 1 76 52443 52518 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:7:70:905:646#0 1 1 76 52443 52518 [GGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCT] HWI-EAS406:6:35:1341:1497#0 1 1 76 52444 52519 [GAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTA] HWI-EAS406:6:28:1743:1594#0 1 1 76 52445 52520 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:5:6:112:390#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:6:24:879:466#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:7:73:1724:1685#0 1 1 76 52446 52521 [AGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTC] HWI-EAS406:7:94:1324:697#0 1 1 76 52449 52524 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:5:11:1687:764#0 1 1 76 52450 52525 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:7:38:116:123#0 1 1 76 52450 52525 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:40:1410:892#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:76:340:1910#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:36:364:1516#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:70:1047:873#0 1 1 76 52451 52526 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:74:787:283#0 1 1 76 52452 52527 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:89:834:1558#0 1 1 76 52452 52527 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:49:1334:1952#0 1 1 76 52453 52528 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:65:263:1491#0 1 1 76 52453 52528 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:5:78:957:1758#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:30:646:977#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:50:1090:503#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:7:43:158:1802#0 1 1 76 52454 52529 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:13:446:1928#0 1 1 76 52456 52531 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:83:1509:904#0 1 1 76 52456 52531 [CCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTG] HWI-EAS406:6:18:602:671#0 1 1 76 52457 52532 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:5:69:1041:132#0 1 1 76 52458 52533 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:6:86:1678:830#0 1 1 76 52458 52533 [CAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCT] HWI-EAS406:6:76:425:734#0 1 1 76 52459 52534 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1369:1448#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1370:1450#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:15:386:1653#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:45:1743:1797#0 1 1 76 52460 52535 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:5:63:157:339#0 1 1 76 52461 52536 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:6:99:151:1752#0 1 1 76 52461 52536 [TGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAG] HWI-EAS406:5:21:74:623#0 1 1 76 52462 52537 [GACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGC] HWI-EAS406:7:3:1765:1463#0 1 1 76 52463 52538 [ACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCT] HWI-EAS406:5:100:867:1403#0 1 1 76 52464 52539 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:5:21:1694:986#0 1 1 76 52465 52540 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:6:23:243:1026#0 1 1 76 52465 52540 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:6:73:769:554#0 1 1 76 52466 52541 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:7:33:333:934#0 1 1 76 52466 52541 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:5:34:80:1647#0 1 1 76 52467 52542 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:7:18:104:733#0 1 1 76 52467 52542 [CATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGA] HWI-EAS406:7:71:1068:1574#0 1 1 76 52468 52543 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:50:1106:1240#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:58:316:1761#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:7:59:96:812#0 1 1 76 52469 52544 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:47:1287:1406#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:68:273:853#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:6:71:678:999#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:7:66:511:931#0 1 1 76 52470 52545 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:6:27:1712:1795#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:43:690:304#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:75:43:1636#0 1 1 76 52471 52546 [ACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACG] HWI-EAS406:7:31:1226:1513#0 1 1 76 52472 52547 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:5:67:1617:965#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:56:1266:96#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:74:1656:109#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:7:2:273:624#0 1 1 76 52473 52548 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:2:443:921#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:66:1335:1233#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:6:94:1634:1213#0 1 1 76 52474 52549 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:5:24:1147:1318#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:6:99:931:988#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:42:443:715#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:82:1415:1808#0 1 1 76 52475 52550 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:18:662:1862#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:26:691:1840#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:60:428:951#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:83:245:1659#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:6:32:791:1173#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:51:376:736#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:70:543:785#0 1 1 76 52476 52551 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:14:1386:1596#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:51:706:494#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:81:325:1398#0 1 1 76 52477 52552 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:5:34:122:1746#0 1 1 76 52478 52553 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:6:95:1264:1695#0 1 1 76 52478 52553 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:10:844:278#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:73:274:1502#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:7:43:327:1656#0 1 1 76 52479 52554 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:72:940:210#0 1 1 76 52480 52555 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:74:282:1963#0 1 1 76 52480 52555 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:41:1127:1992#0 1 1 76 52481 52556 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:74:253:671#0 1 1 76 52481 52556 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:6:74:1612:1102#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:15:103:280#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:28:942:1576#0 1 1 76 52482 52557 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:30:1082:1249#0 1 1 76 52483 52558 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:90:436:1780#0 1 1 76 52483 52558 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:10:964:478#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:21:804:471#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:6:37:1646:747#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:7:12:1579:1295#0 1 1 76 52484 52559 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:5:70:1191:63#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:32:1484:542#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:93:690:1159#0 1 1 76 52485 52560 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:88:794:359#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:95:1262:1246#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:6:11:608:389#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:7:7:665:1469#0 1 1 76 52487 52562 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:6:51:1748:924#0 1 1 76 52488 52563 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:7:38:312:1700#0 1 1 76 52488 52563 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:5:66:785:1132#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:6:48:1563:1761#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:31:879:269#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:68:1429:1697#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:70:1178:1056#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:98:194:426#0 1 1 76 52489 52564 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:18:834:2002#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:96:777:523#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:6:19:1451:79#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:9:796:694#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:45:1281:1591#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:72:162:2022#0 1 1 76 52490 52565 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:5:8:524:330#0 1 1 76 52491 52566 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:7:72:115:1689#0 1 1 76 52491 52566 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:6:83:1575:1953#0 1 1 76 52492 52567 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:7:16:697:657#0 1 1 76 52492 52567 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:5:57:1336:1073#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:878:959#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:1740:1330#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:32:1710:799#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:44:910:1817#0 1 1 76 52493 52568 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:5:13:1589:1763#0 1 1 76 52494 52569 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:7:62:164:886#0 1 1 76 52494 52569 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:28:1334:1780#0 1 1 76 52495 52570 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:57:682:1761#0 1 1 76 52495 52570 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:6:91:1101:1030#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:64:1205:794#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:78:1109:1#0 1 1 76 52496 52571 [CATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAA] HWI-EAS406:6:49:949:577#0 1 1 76 52497 52572 [ATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAAC] HWI-EAS406:5:63:1417:785#0 1 1 76 52498 52573 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:51:1518:1187#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:70:521:909#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:73:559:537#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:98:1445:897#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:8:1630:621#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:18:1287:928#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:35:659:1510#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:76:1054:1173#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:91:153:1178#0 1 1 76 52499 52574 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:29:1504:889#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:47:876:1309#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:51:1240:1263#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:7:3:329:1926#0 1 1 76 52500 52575 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:5:9:665:754#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:6:79:1515:1769#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:7:5:321:1398#0 1 1 76 52501 52576 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:10:448:847#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:84:939:302#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:6:4:605:946#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:10:1155:1736#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:35:1593:1354#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:90:1553:1930#0 1 1 76 52502 52577 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:5:97:42:1409#0 1 1 76 52503 52578 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:6:72:374:36#0 1 1 76 52503 52578 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:1:363:555#0 1 1 76 52504 52579 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:67:457:2017#0 1 1 76 52504 52579 [GAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAG] HWI-EAS406:7:96:993:1666#0 1 1 76 52505 52580 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:22:214:325#0 1 1 76 52506 52581 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:82:789:903#0 1 1 76 52506 52581 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:5:74:1338:1894#0 1 1 76 52507 52582 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:7:30:366:836#0 1 1 76 52507 52582 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:8:749:1123#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:53:88:1848#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:3:1646:1866#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:29:354:1197#0 1 1 76 52508 52583 [GTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTC] HWI-EAS406:6:15:1327:1024#0 1 1 76 52510 52585 [TTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCA] HWI-EAS406:5:98:1669:1163#0 1 1 76 52511 52586 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:13:588:1428#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:81:305:252#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:94:711:1778#0 1 1 76 52512 52587 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:5:72:446:1078#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:6:33:92:1092#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:7:66:493:314#0 1 1 76 52513 52588 [TTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTG] HWI-EAS406:7:8:360:1468#0 1 1 76 52514 52589 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:5:55:629:1181#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:10:957:369#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:63:1404:1267#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:67:377:1457#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:93:77:1511#0 1 1 76 52515 52590 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:8:919:1857#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:45:1692:468#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:72:1250:436#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:7:22:875:178#0 1 1 76 52516 52591 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:5:36:1193:1569#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:6:59:1446:981#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:7:33:864:49#0 1 1 76 52517 52592 [CTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGC] HWI-EAS406:6:75:1268:559#0 1 1 76 52518 52593 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:13:887:1017#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:77:991:1540#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:33:832:140#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:77:1261:1245#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:7:35:607:1366#0 1 1 76 52519 52594 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:5:47:873:1758#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:23:1537:1227#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1564:1847#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1731:835#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:61:1436:1032#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:79:913:1653#0 1 1 76 52520 52595 [CTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTG] HWI-EAS406:6:38:59:951#0 1 1 76 52521 52596 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:25:1507:1261#0 1 1 76 52522 52597 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:29:1214:1944#0 1 1 76 52522 52597 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:5:67:86:578#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:6:42:1774:1442#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:1:189:1556#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:10:1412:914#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:17:97:955#0 1 1 76 52524 52599 [AAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAG] HWI-EAS406:5:69:799:1623#0 1 1 76 52525 52600 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:35:1168:776#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:76:318:325#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:92:295:1460#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:6:26:712:900#0 1 1 76 52526 52601 [GAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAG] HWI-EAS406:6:89:257:1369#0 1 1 76 52527 52602 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:12:1206:1252#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:95:1686:1754#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:6:13:1570:968#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:7:36:769:1869#0 1 1 76 52528 52603 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:53:432:995#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:934:508#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:1447:59#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:7:92:513:1466#0 1 1 76 52529 52604 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:6:27:1121:1352#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:28:1475:1019#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:86:1641:7#0 1 1 76 52530 52605 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:6:25:1093:266#0 1 1 76 52531 52606 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:7:86:1284:1345#0 1 1 76 52531 52606 [GCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCA] HWI-EAS406:6:6:345:1154#0 1 1 76 52532 52607 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:62:493:202#0 1 1 76 52533 52608 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:88:725:714#0 1 1 76 52533 52608 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:12:1673:1480#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:20:46:301#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:42:1276:1476#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:7:73:376:1496#0 1 1 76 52534 52609 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:8:1375:1270#0 1 1 76 52535 52610 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:71:410:514#0 1 1 76 52535 52610 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:24:1366:388#0 1 1 76 52536 52611 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:33:223:1151#0 1 1 76 52536 52611 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:59:1075:1577#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:72:1351:1858#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:7:24:1725:638#0 1 1 76 52537 52612 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:6:79:313:934#0 1 1 76 52538 52613 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:7:87:1208:82#0 1 1 76 52538 52613 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:12:1396:1654#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:26:729:915#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:6:65:1510:1944#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:7:71:1744:1427#0 1 1 76 52539 52614 [GAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTAC] HWI-EAS406:5:13:538:853#0 1 1 76 52540 52615 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:5:25:1344:1201#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:23:1678:1177#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:71:97:1960#0 1 1 76 52541 52616 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:5:55:574:1991#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:6:79:1392:1059#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:7:29:1737:689#0 1 1 76 52542 52617 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:35:1523:1128#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:68:848:1372#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:7:82:274:1527#0 1 1 76 52543 52618 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:8:1602:1902#0 1 1 76 52544 52619 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:93:165:1467#0 1 1 76 52544 52619 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:26:1215:168#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:45:1150:1600#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:6:96:169:645#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:7:6:944:1625#0 1 1 76 52545 52620 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:5:76:1228:1139#0 1 1 76 52546 52621 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:7:68:484:916#0 1 1 76 52546 52621 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:5:59:565:1459#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:6:1459:340#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:77:1461:267#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:93:108:1063#0 1 1 76 52547 52622 [AGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCA] HWI-EAS406:5:95:924:1921#0 1 1 76 52548 52623 [GATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAA] HWI-EAS406:7:13:1035:1167#0 1 1 76 52549 52624 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:2:478:1202#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:80:1169:1125#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:90:1546:929#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:6:1:1764:573#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:7:63:671:1580#0 1 1 76 52550 52625 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:63:1087:724#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:71:1490:1081#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:6:364:512#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:98:1579:1040#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:25:655:1303#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:49:1462:290#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:61:491:22#0 1 1 76 52551 52626 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:56:87:1755#0 1 1 76 52552 52627 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:57:91:1117#0 1 1 76 52552 52627 [TCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCC] HWI-EAS406:6:63:377:361#0 1 1 76 52553 52628 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:41:1439:1817#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:76:350:1040#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:80:1498:578#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:7:98:180:949#0 1 1 76 52554 52629 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:5:51:1261:274#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:6:67:361:133#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:7:61:56:966#0 1 1 76 52555 52630 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:5:1159:616#0 1 1 76 52556 52631 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:66:83:1138#0 1 1 76 52556 52631 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:42:1311:1327#0 1 1 76 52557 52632 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:59:832:1813#0 1 1 76 52557 52632 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:40:532:318#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:84:807:560#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:7:61:992:1593#0 1 1 76 52559 52634 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:31:970:383#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:42:1351:1536#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:48:428:1071#0 1 1 76 52560 52635 [CAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATG] HWI-EAS406:6:48:1577:1480#0 1 1 76 52562 52637 [ACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGC] HWI-EAS406:7:15:1612:1112#0 1 1 76 52564 52639 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:49:1261:547#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:73:1762:1319#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:79:1561:507#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:98:1341:624#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:7:53:1535:371#0 1 1 76 52565 52640 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:5:54:400:458#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:6:67:510:1693#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:26:1299:1893#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:68:216:206#0 1 1 76 52566 52641 [GAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTT] HWI-EAS406:5:59:34:1592#0 1 1 76 52567 52642 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:5:16:972:45#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:11:371:1927#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:22:1573:1772#0 1 1 76 52568 52643 [AGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTC] HWI-EAS406:7:4:166:1389#0 1 1 76 52569 52644 [GAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCT] HWI-EAS406:6:57:1119:1514#0 1 1 76 52570 52645 [AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTA] HWI-EAS406:7:34:1780:1208#0 1 1 76 52571 52646 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:5:79:1307:885#0 1 1 76 52572 52647 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:6:28:1476:1985#0 1 1 76 52572 52647 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:5:89:602:1500#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:6:61:350:1908#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:7:99:1709:1108#0 1 1 76 52573 52648 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:6:39:1301:1592#0 1 1 76 52576 52651 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:7:93:355:996#0 1 1 76 52576 52651 [AAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAG] HWI-EAS406:7:44:589:1076#0 1 1 76 52578 52653 [CTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTA] HWI-EAS406:7:66:567:977#0 1 1 76 52582 52657 [AGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGA] HWI-EAS406:7:64:1507:1368#0 1 1 76 52586 52661 [TGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGC] HWI-EAS406:7:52:1280:1062#0 1 1 76 52588 52663 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:22:795:1941#0 1 1 76 52589 52664 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:26:284:1360#0 1 1 76 52589 52664 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:5:43:722:1079#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:5:111:1769#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:39:680:1003#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:7:66:210:1927#0 1 1 76 52590 52665 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:5:4:82:684#0 1 1 76 52591 52666 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:6:31:1437:1285#0 1 1 76 52591 52666 [CTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTC] HWI-EAS406:6:68:737:1957#0 1 1 76 52594 52669 [GGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTA] HWI-EAS406:7:43:1317:534#0 1 1 76 52596 52671 [GGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTAC] HWI-EAS406:7:18:1662:381#0 1 1 76 52597 52672 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:5:71:466:482#0 1 1 76 52600 52675 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:6:60:840:1286#0 1 1 76 52600 52675 [GATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGG] HWI-EAS406:6:54:1094:829#0 1 1 76 52602 52677 [ATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGT] HWI-EAS406:6:65:1104:543#0 1 1 76 52603 52678 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:3:262:446#0 1 1 76 52605 52680 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:99:1259:1454#0 1 1 76 52605 52680 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:5:64:878:239#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:6:2:290:554#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:7:71:1076:1486#0 1 1 76 52606 52681 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:5:80:232:812#0 1 1 76 52607 52682 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:7:98:704:841#0 1 1 76 52607 52682 [AGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCT] HWI-EAS406:7:8:1752:1537#0 1 1 76 52608 52683 [GGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTC] HWI-EAS406:7:79:360:885#0 1 1 76 52610 52685 [GCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCC] HWI-EAS406:7:74:1334:1841#0 1 1 76 52611 52686 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:5:84:1424:1849#0 1 1 76 52612 52687 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:6:67:1481:1218#0 1 1 76 52612 52687 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:28:1421:1393#0 1 1 76 52613 52688 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:35:949:1809#0 1 1 76 52613 52688 [AAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTA] HWI-EAS406:7:19:1321:1012#0 1 1 76 52617 52692 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:30:762:1326#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:84:672:1802#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:6:87:177:1204#0 1 1 76 52618 52693 [GCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACA] HWI-EAS406:5:84:1245:399#0 1 1 76 52619 52694 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:22:1430:399#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:73:930:335#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:7:27:1395:1095#0 1 1 76 52620 52695 [TCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGA] HWI-EAS406:6:25:1531:1308#0 1 1 76 52621 52696 [CAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAG] HWI-EAS406:5:60:329:1295#0 1 1 76 52622 52697 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1399:1567#0 1 1 76 52623 52698 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1401:1568#0 1 1 76 52623 52698 [CACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACT] HWI-EAS406:5:55:1359:18#0 1 1 76 52629 52704 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:5:60:1059:1422#0 1 1 76 52630 52705 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:6:4:537:1682#0 1 1 76 52630 52705 [CCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGG] HWI-EAS406:6:68:446:775#0 1 1 76 52631 52706 [CCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGAT] HWI-EAS406:5:77:1513:381#0 1 1 76 52633 52708 [CATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATA] HWI-EAS406:6:32:1019:1170#0 1 1 76 52634 52709 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:27:1235:1180#0 1 1 76 52635 52710 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:64:181:772#0 1 1 76 52635 52710 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:38:595:2023#0 1 1 76 52636 52711 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:67:901:893#0 1 1 76 52636 52711 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:6:11:874:891#0 1 1 76 52638 52713 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:7:73:1469:541#0 1 1 76 52638 52713 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:64:441:449#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:68:357:988#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:95:433:1083#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:7:9:1061:1695#0 1 1 76 52639 52714 [TTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTA] HWI-EAS406:7:9:910:60#0 1 1 76 52640 52715 [TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAG] HWI-EAS406:6:53:370:1905#0 1 1 76 52641 52716 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:28:140:1966#0 1 1 76 52646 52721 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:37:692:1780#0 1 1 76 52646 52721 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:5:47:548:1945#0 1 1 76 52647 52722 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:7:77:851:1718#0 1 1 76 52647 52722 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:5:13:1567:1317#0 1 1 76 52648 52723 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:6:10:96:380#0 1 1 76 52648 52723 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:5:76:738:1384#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:35:1399:224#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:94:182:673#0 1 1 76 52650 52725 [GAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTC] HWI-EAS406:6:22:1505:677#0 1 1 76 52651 52726 [AGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCT] HWI-EAS406:6:13:813:876#0 1 1 76 52652 52727 [GCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTT] HWI-EAS406:5:61:462:1645#0 1 1 76 52653 52728 [TTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCT] HWI-EAS406:7:85:795:1004#0 1 1 76 52655 52730 [TACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTT] HWI-EAS406:7:56:851:23#0 1 1 76 52656 52731 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:5:6:1008:413#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:6:51:585:982#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:7:23:336:1844#0 1 1 76 52657 52732 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:5:16:411:1866#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:20:546:48#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:24:1344:1284#0 1 1 76 52658 52733 [TGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGG] HWI-EAS406:5:26:156:1919#0 1 1 76 52659 52734 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:5:19:1560:1097#0 1 1 76 52660 52735 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:7:16:1163:1496#0 1 1 76 52660 52735 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:27:433:1044#0 1 1 76 52661 52736 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:65:1044:297#0 1 1 76 52661 52736 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:66:824:745#0 1 1 76 52662 52737 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:72:187:1085#0 1 1 76 52662 52737 [CACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGA] HWI-EAS406:7:36:1290:958#0 1 1 76 52663 52738 [ACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAA] HWI-EAS406:7:81:1719:703#0 1 1 76 52664 52739 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:12:1322:1927#0 1 1 76 52665 52740 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:74:1281:286#0 1 1 76 52665 52740 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:5:58:49:176#0 1 1 76 52666 52741 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:6:59:1083:530#0 1 1 76 52666 52741 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:38:80:785#0 1 1 76 52669 52744 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:91:1656:759#0 1 1 76 52669 52744 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:25:719:1348#0 1 1 76 52670 52745 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:32:814:32#0 1 1 76 52670 52745 [ACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGA] HWI-EAS406:7:1:1153:1584#0 1 1 76 52671 52746 [CCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAG] HWI-EAS406:5:14:755:1230#0 1 1 76 52672 52747 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:8:1435:965#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:55:660:4#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:7:19:932:1420#0 1 1 76 52674 52749 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:6:22:1593:317#0 1 1 76 52679 52754 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:7:44:1033:557#0 1 1 76 52679 52754 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:5:61:27:362#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:6:96:1530:676#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:47:1188:206#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:62:257:2014#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:100:1432:1531#0 1 1 76 52680 52755 [TCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAA] HWI-EAS406:7:63:827:1142#0 1 1 76 52681 52756 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:5:71:19:953#0 1 1 76 52682 52757 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:6:90:980:1734#0 1 1 76 52682 52757 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:75:1453:957#0 1 1 76 52683 52758 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:90:1220:1465#0 1 1 76 52683 52758 [TCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAG] HWI-EAS406:6:72:232:113#0 1 1 76 52684 52759 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:6:74:1465:21#0 1 1 76 52685 52760 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:7:35:1727:756#0 1 1 76 52685 52760 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:20:1116:1667#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:75:1545:1205#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:6:75:345:808#0 1 1 76 52686 52761 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:6:39:902:457#0 1 1 76 52687 52762 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:7:49:1144:1840#0 1 1 76 52687 52762 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:5:89:719:1932#0 1 1 76 52688 52763 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:7:49:1562:29#0 1 1 76 52688 52763 [AGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGT] HWI-EAS406:7:89:1328:1251#0 1 1 76 52689 52764 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:8:652:1592#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:9:1617:799#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:7:57:304:1400#0 1 1 76 52691 52766 [ACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGA] HWI-EAS406:5:74:1597:1977#0 1 1 76 52692 52767 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:6:3:1436:826#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:67:916:1425#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:82:300:1277#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:95:284:231#0 1 1 76 52693 52768 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:5:49:1356:1604#0 1 1 76 52695 52770 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:7:84:460:1196#0 1 1 76 52695 52770 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:5:31:397:693#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:48:789:839#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:78:308:217#0 1 1 76 52696 52771 [CCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACAT] HWI-EAS406:5:92:833:2028#0 1 1 76 52698 52773 [CAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATG] HWI-EAS406:7:92:954:996#0 1 1 76 52699 52774 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:5:65:165:1131#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:36:691:7#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:73:1136:500#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:96:1118:976#0 1 1 76 52700 52775 [ACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTA] HWI-EAS406:6:84:330:461#0 1 1 76 52702 52777 [CTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAA] HWI-EAS406:6:57:756:1865#0 1 1 76 52703 52778 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:5:85:86:1811#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:34:1489:1055#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:87:1313:1321#0 1 1 76 52704 52779 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:5:64:512:1642#0 1 1 76 52705 52780 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:7:17:769:337#0 1 1 76 52705 52780 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:5:66:981:1355#0 1 1 76 52706 52781 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:6:95:1395:605#0 1 1 76 52706 52781 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:6:54:371:1133#0 1 1 76 52709 52784 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:7:85:356:1379#0 1 1 76 52709 52784 [CAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGA] HWI-EAS406:5:33:1446:179#0 1 1 76 52710 52785 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:5:44:1170:794#0 1 1 76 52711 52786 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:7:100:474:1208#0 1 1 76 52711 52786 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:54:1730:327#0 1 1 76 52713 52788 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:90:27:1950#0 1 1 76 52713 52788 [CAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTC] HWI-EAS406:7:20:1428:1247#0 1 1 76 52717 52792 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:5:26:209:353#0 1 1 76 52718 52793 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:6:11:1176:1783#0 1 1 76 52718 52793 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:8:1579:696#0 1 1 76 52719 52794 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:38:1393:205#0 1 1 76 52719 52794 [GGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACA] HWI-EAS406:7:65:96:1531#0 1 1 76 52721 52796 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:5:69:547:743#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:6:28:1411:1934#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:7:7:1352:1238#0 1 1 76 52724 52799 [TCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGG] HWI-EAS406:6:68:1612:781#0 1 1 76 52725 52800 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:29:562:58#0 1 1 76 52730 52805 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:75:1431:401#0 1 1 76 52730 52805 [GGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACG] HWI-EAS406:5:6:754:1118#0 1 1 76 52733 52808 [GGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGA] HWI-EAS406:5:71:373:1022#0 1 1 76 52734 52809 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:20:289:1552#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:92:213:665#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:7:54:1760:1267#0 1 1 76 52735 52810 [AGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACA] HWI-EAS406:7:48:1621:1285#0 1 1 76 52736 52811 [AACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGA] HWI-EAS406:7:57:367:1568#0 1 1 76 52738 52813 [ACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAG] HWI-EAS406:6:57:1192:31#0 1 1 76 52739 52814 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:6:100:491:1058#0 1 1 76 52740 52815 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:7:12:213:1715#0 1 1 76 52740 52815 [GAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCA] HWI-EAS406:5:10:1671:1999#0 1 1 76 52742 52817 [AGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAG] HWI-EAS406:7:31:820:772#0 1 1 76 52743 52818 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:18:1108:1468#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:93:973:1263#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:6:54:325:1697#0 1 1 76 52747 52822 [GATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAA] HWI-EAS406:7:63:444:1270#0 1 1 76 52748 52823 [GCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAG] HWI-EAS406:5:18:996:2006#0 1 1 76 52751 52826 [AAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGA] HWI-EAS406:6:56:1047:1693#0 1 1 76 52755 52830 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:6:70:1271:681#0 1 1 76 52757 52832 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:7:89:353:1220#0 1 1 76 52757 52832 [GGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAG] HWI-EAS406:7:41:92:805#0 1 1 76 52762 52837 [GTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGA] HWI-EAS406:5:29:1681:802#0 1 1 76 52763 52838 [CAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGG] HWI-EAS406:7:36:675:850#0 1 1 76 52768 52843 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:601:809#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:820:932#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:6:27:885:1266#0 1 1 76 52769 52844 [CATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAA] HWI-EAS406:6:62:569:1444#0 1 1 76 52771 52846 [ATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAG] HWI-EAS406:7:30:95:1595#0 1 1 76 52772 52847 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:18:1770:316#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:55:911:1113#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:7:29:263:253#0 1 1 76 52773 52848 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:5:77:871:893#0 1 1 76 52774 52849 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:6:16:1436:1900#0 1 1 76 52774 52849 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:5:4:859:1091#0 1 1 76 52775 52850 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:7:29:1141:1851#0 1 1 76 52775 52850 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:6:26:595:1371#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:40:1232:1393#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:89:1396:1026#0 1 1 76 52776 52851 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:6:2:1627:472#0 1 1 76 52777 52852 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:7:99:636:1603#0 1 1 76 52777 52852 [AAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCA] HWI-EAS406:7:77:177:1715#0 1 1 76 52778 52853 [AGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAA] HWI-EAS406:7:100:309:1438#0 1 1 76 52779 52854 [GCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGG] HWI-EAS406:6:21:1395:910#0 1 1 76 52787 52862 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:5:59:145:1175#0 1 1 76 52792 52867 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:6:14:1246:1693#0 1 1 76 52792 52867 [ACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAA] HWI-EAS406:7:77:1713:1632#0 1 1 76 52794 52869 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:5:39:548:1024#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:38:1520:842#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:40:347:1850#0 1 1 76 52801 52876 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:6:89:742:643#0 1 1 76 52805 52880 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:7:75:1154:839#0 1 1 76 52805 52880 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:5:78:754:459#0 1 1 76 52806 52881 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:6:1:384:1591#0 1 1 76 52806 52881 [ACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCAT] HWI-EAS406:7:22:1375:1195#0 1 1 76 52809 52884 [CAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATT] HWI-EAS406:5:1:1719:1033#0 1 1 76 52810 52885 [GAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGC] HWI-EAS406:6:90:835:1482#0 1 1 76 52812 52887 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:5:24:136:1541#0 1 1 76 52815 52890 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:6:65:1614:1321#0 1 1 76 52815 52890 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:5:51:377:1153#0 1 1 76 52818 52893 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:7:66:266:1654#0 1 1 76 52818 52893 [AACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCA] HWI-EAS406:6:60:351:367#0 1 1 76 52822 52897 [ATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGA] HWI-EAS406:5:90:750:261#0 1 1 76 52830 52905 [TAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAG] HWI-EAS406:7:24:564:704#0 1 1 76 52831 52906 [AAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGC] HWI-EAS406:7:36:1312:1239#0 1 1 76 52832 52907 [GCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAG] HWI-EAS406:7:62:1248:1996#0 1 1 76 52834 52909 [AGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGT] HWI-EAS406:7:74:1634:372#0 1 1 76 52841 52916 [GAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTT] HWI-EAS406:5:24:1213:1202#0 1 1 76 52843 52918 [AAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTG] HWI-EAS406:5:17:1388:1409#0 1 1 76 52844 52919 [AGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTT] HWI-EAS406:7:67:1179:690#0 1 1 76 52846 52921 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:6:73:723:696#0 1 1 76 52849 52924 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:7:37:1631:1209#0 1 1 76 52849 52924 [ATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTA] HWI-EAS406:6:86:426:1963#0 1 1 76 52850 52925 [CAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAAC] HWI-EAS406:6:95:1476:426#0 1 1 76 52852 52927 [TTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAG] HWI-EAS406:6:67:1618:794#0 1 1 76 52858 52933 [TTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGC] HWI-EAS406:7:83:202:1767#0 1 1 76 52859 52934 [TGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCA] HWI-EAS406:7:68:1139:1819#0 1 1 76 52860 52935 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:6:68:1729:626#0 1 1 76 52863 52938 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:7:32:1013:1608#0 1 1 76 52863 52938 [GACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAG] HWI-EAS406:5:28:1506:37#0 1 1 76 52865 52940 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:5:15:1255:1708#0 1 1 76 52867 52942 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:7:81:1212:713#0 1 1 76 52867 52942 [AGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCC] HWI-EAS406:7:10:1250:1965#0 1 1 76 52869 52944 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:69:319:840#0 1 1 76 52874 52949 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:87:253:1053#0 1 1 76 52874 52949 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:45:113:1763#0 1 1 76 52878 52953 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:77:1188:580#0 1 1 76 52878 52953 [CTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCA] HWI-EAS406:5:5:491:1005#0 1 1 76 52880 52955 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:6:73:850:1573#0 1 1 76 52882 52957 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:7:82:431:428#0 1 1 76 52882 52957 [ATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATG] HWI-EAS406:6:78:691:1612#0 1 1 76 52883 52958 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:41:1719:1887#0 1 1 76 52884 52959 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:100:1346:1547#0 1 1 76 52884 52959 [TGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAG] HWI-EAS406:5:6:900:884#0 1 1 76 52885 52960 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:61:1086:1684#0 1 1 76 52886 52961 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:81:942:1767#0 1 1 76 52886 52961 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:5:769:2001#0 1 1 76 52888 52963 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:55:734:1718#0 1 1 76 52888 52963 [AAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAG] HWI-EAS406:7:84:1333:1560#0 1 1 76 52891 52966 [AAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGG] HWI-EAS406:6:18:443:1002#0 1 1 76 52892 52967 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:6:84:1247:1172#0 1 1 76 52893 52968 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:7:4:304:1492#0 1 1 76 52893 52968 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:11:1749:1681#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:31:1333:1527#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:63:113:503#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:80:1392:481#0 1 1 76 52894 52969 [GCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTT] HWI-EAS406:7:20:338:25#0 1 1 76 52895 52970 [CAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTT] HWI-EAS406:5:38:934:1502#0 1 1 76 52896 52971 [AACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTG] HWI-EAS406:5:85:776:1725#0 1 1 76 52897 52972 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:6:13:1228:1046#0 1 1 76 52898 52973 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:7:46:1190:1221#0 1 1 76 52898 52973 [CAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAG] HWI-EAS406:6:63:305:1144#0 1 1 76 52901 52976 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:6:48:1216:572#0 1 1 76 52902 52977 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:7:99:1265:274#0 1 1 76 52902 52977 [AGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGT] HWI-EAS406:6:11:1471:1239#0 1 1 76 52903 52978 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:20:1218:1653#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:100:1058:560#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:7:37:765:354#0 1 1 76 52904 52979 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:5:85:988:89#0 1 1 76 52907 52982 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:6:24:1088:1499#0 1 1 76 52907 52982 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:5:69:1278:1921#0 1 1 76 52908 52983 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:6:49:886:976#0 1 1 76 52908 52983 [GCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAG] HWI-EAS406:7:97:1262:733#0 1 1 76 52909 52984 [CTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGG] HWI-EAS406:7:80:873:1646#0 1 1 76 52910 52985 [TGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGA] HWI-EAS406:5:74:311:1222#0 1 1 76 52911 52986 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:2:1609:513#0 1 1 76 52912 52987 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:6:655:560#0 1 1 76 52912 52987 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:5:65:175:674#0 1 1 76 52914 52989 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:6:67:977:2#0 1 1 76 52914 52989 [TTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTG] HWI-EAS406:5:87:785:887#0 1 1 76 52917 52992 [TGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGT] HWI-EAS406:7:30:1447:1855#0 1 1 76 52918 52993 [GTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTT] HWI-EAS406:7:71:677:1038#0 1 1 76 52919 52994 [TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTC] HWI-EAS406:5:74:859:201#0 1 1 76 52921 52996 [TAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATC] HWI-EAS406:6:56:1319:796#0 1 1 76 52924 52999 [CTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAAC] HWI-EAS406:5:14:611:1579#0 1 1 76 52927 53002 [TCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACA] HWI-EAS406:7:38:1155:2035#0 1 1 76 52928 53003 [AAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACA] HWI-EAS406:7:8:283:983#0 1 1 76 52931 53006 [CAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATG] HWI-EAS406:7:25:45:1377#0 1 1 76 52934 53009 [AGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGG] HWI-EAS406:7:40:1449:1249#0 1 1 76 52935 53010 [GGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGT] HWI-EAS406:7:90:1220:1315#0 1 1 76 52936 53011 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:6:20:842:1693#0 1 1 76 52948 53023 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:7:76:1565:1995#0 1 1 76 52948 53023 [TCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGA] HWI-EAS406:7:59:1788:1538#0 1 1 76 52953 53028 [AGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCA] HWI-EAS406:6:20:1735:1047#0 1 1 76 52965 53040 [GTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTA] HWI-EAS406:6:94:939:1047#0 1 1 76 52968 53043 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:5:22:330:789#0 1 1 76 52979 53054 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:7:70:1669:163#0 1 1 76 52979 53054 [AGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAA] HWI-EAS406:6:34:1002:1940#0 1 1 76 52986 53061 [GTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAA] HWI-EAS406:7:22:1333:1659#0 1 1 76 52987 53062 [TGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATC] HWI-EAS406:7:71:625:1767#0 1 1 76 52989 53064 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:5:82:1551:1229#0 1 1 76 52990 53065 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:7:23:1642:1419#0 1 1 76 52990 53065 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:5:16:562:1965#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:6:34:665:833#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:7:70:203:1497#0 1 1 76 52991 53066 [GTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTA] HWI-EAS406:6:72:348:1278#0 1 1 76 52992 53067 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:10:766:1082#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:15:1036:645#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:70:488:482#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:97:1715:1971#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:7:17:1509:1035#0 1 1 76 52993 53068 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:5:86:82:1111#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:6:81:669:867#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:7:23:798:1374#0 1 1 76 52995 53070 [TCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAA] HWI-EAS406:6:9:928:223#0 1 1 76 52998 53073 [CAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAAC] HWI-EAS406:5:74:1187:1738#0 1 1 76 52999 53074 [AACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACA] HWI-EAS406:7:72:535:1762#0 1 1 76 53000 53075 [ACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAA] HWI-EAS406:6:67:691:451#0 1 1 76 53001 53076 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:6:10:1056:1388#0 1 1 76 53003 53078 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:7:67:1043:1053#0 1 1 76 53003 53078 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:26:1302:1511#0 1 1 76 53005 53080 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:96:1696:1630#0 1 1 76 53005 53080 [AATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAAC] HWI-EAS406:5:68:1329:1227#0 1 1 76 53006 53081 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:6:96:361:1171#0 1 1 76 53007 53082 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:7:66:1046:1538#0 1 1 76 53007 53082 [GTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAG] HWI-EAS406:6:5:1784:1359#0 1 1 76 53010 53085 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:6:85:984:1150#0 1 1 76 53013 53088 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:7:97:1335:1860#0 1 1 76 53013 53088 [CTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGC] HWI-EAS406:7:53:1507:1400#0 1 1 76 53014 53089 [ACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCC] HWI-EAS406:5:83:731:357#0 1 1 76 53019 53094 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:21:1623:1222#0 1 1 76 53020 53095 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:57:293:559#0 1 1 76 53020 53095 [AGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAG] HWI-EAS406:6:58:278:902#0 1 1 76 53025 53100 [AGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAA] HWI-EAS406:7:81:1340:993#0 1 1 76 53028 53103 [GCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAAC] HWI-EAS406:6:74:463:426#0 1 1 76 53029 53104 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:5:35:1464:1782#0 1 1 76 53032 53107 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:6:87:1247:611#0 1 1 76 53032 53107 [CTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAG] HWI-EAS406:6:76:1017:1131#0 1 1 76 53035 53110 [TTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGC] HWI-EAS406:6:33:1752:469#0 1 1 76 53036 53111 [TCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAA] HWI-EAS406:5:76:1166:1108#0 1 1 76 53038 53113 [ACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGG] HWI-EAS406:6:36:443:1615#0 1 1 76 53073 53148 [TGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCT] HWI-EAS406:6:59:1322:1397#0 1 1 76 53086 53161 [ATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGA] HWI-EAS406:7:89:825:731#0 1 1 76 53091 53166 [CGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAG] HWI-EAS406:6:77:994:1321#0 1 1 76 53094 53169 [CAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAG] HWI-EAS406:5:45:852:1913#0 1 1 76 53097 53172 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:6:10:326:468#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:56:1362:1475#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:72:1291:311#0 1 1 76 53108 53183 [AGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTG] HWI-EAS406:7:17:466:111#0 1 1 76 53113 53188 [TCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATC] HWI-EAS406:7:66:68:337#0 1 1 76 53122 53197 [TTGGAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCT] HWI-EAS406:6:82:241:1543#0 1 1 76 53198 53273 [GTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAA] HWI-EAS406:6:38:237:441#0 1 1 76 53217 53292 [GAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAAT] HWI-EAS406:7:19:1518:715#0 1 1 76 53219 53294 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:5:83:1397:1100#0 1 1 76 53220 53295 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:7:65:499:294#0 1 1 76 53220 53295 [GAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTC] HWI-EAS406:6:63:1490:915#0 1 1 76 53221 53296 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:5:59:1092:2030#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:6:47:258:1736#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:7:41:1735:1335#0 1 1 76 53222 53297 [AGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTC] HWI-EAS406:6:70:64:1370#0 1 1 76 53223 53298 [ACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACA] HWI-EAS406:7:6:486:803#0 1 1 76 53226 53301 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:5:52:1062:869#0 1 1 76 53229 53304 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:7:56:632:1389#0 1 1 76 53229 53304 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:6:85:1131:1902#0 1 1 76 53230 53305 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:7:12:938:467#0 1 1 76 53230 53305 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:17:718:33#0 1 1 76 53232 53307 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:61:110:1832#0 1 1 76 53232 53307 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:6:100:986:193#0 1 1 76 53234 53309 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:7:21:1696:587#0 1 1 76 53234 53309 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:20:380:87#0 1 1 76 53235 53310 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:42:431:1815#0 1 1 76 53235 53310 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:33:127:1815#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:96:508:870#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:7:52:798:712#0 1 1 76 53236 53311 [GAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTA] HWI-EAS406:5:56:1533:1579#0 1 1 76 53237 53312 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:5:72:1534:1868#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:6:30:1499:778#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:7:7:579:773#0 1 1 76 53238 53313 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:9:793:1263#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:58:1341:937#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:63:976:865#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:98:571:1639#0 1 1 76 53239 53314 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:8:1577:705#0 1 1 76 53240 53315 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:74:408:1585#0 1 1 76 53240 53315 [TGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGT] HWI-EAS406:7:99:179:769#0 1 1 76 53241 53316 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:29:408:1113#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:72:124:367#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:16:327:1812#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:59:789:1513#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:7:66:1416:1146#0 1 1 76 53242 53317 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:5:37:953:299#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:30:1613:1665#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:100:711:1721#0 1 1 76 53243 53318 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:5:7:38:1359#0 1 1 76 53244 53319 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:6:7:1476:1748#0 1 1 76 53244 53319 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:28:678:746#0 1 1 76 53245 53320 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:45:1088:583#0 1 1 76 53245 53320 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:5:43:1382:957#0 1 1 76 53248 53323 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:6:32:56:484#0 1 1 76 53248 53323 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:44:386:1988#0 1 1 76 53249 53324 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:78:14:1600#0 1 1 76 53249 53324 [ATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGA] HWI-EAS406:6:60:676:884#0 1 1 76 53253 53328 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:12:678:190#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:47:1560:929#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:76:1176:1214#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:84:1300:1222#0 1 1 76 53256 53331 [AGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCA] HWI-EAS406:6:71:506:1906#0 1 1 76 53259 53334 [TGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTT] HWI-EAS406:5:14:149:1789#0 1 1 76 53263 53338 [ATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC] HWI-EAS406:6:37:1358:195#0 1 1 76 53265 53340 [TGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCT] HWI-EAS406:7:26:892:1572#0 1 1 76 53266 53341 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:5:58:643:299#0 1 1 76 53268 53343 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:6:47:1677:1260#0 1 1 76 53268 53343 [AGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCA] HWI-EAS406:7:55:524:1341#0 1 1 76 53270 53345 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:6:5:673:143#0 1 1 76 53276 53351 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:7:38:1070:231#0 1 1 76 53276 53351 [TGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACT] HWI-EAS406:7:61:728:1124#0 1 1 76 53278 53353 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:6:94:67:550#0 1 1 76 53279 53354 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:7:25:1555:517#0 1 1 76 53279 53354 [CAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAAT] HWI-EAS406:5:26:1782:1487#0 1 1 76 53287 53362 [AACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATC] HWI-EAS406:7:99:1410:678#0 1 1 76 53288 53363 [ACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCG] HWI-EAS406:7:12:1549:1905#0 1 1 76 53289 53364 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:94:660:1298#0 1 1 76 53290 53365 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:99:486:564#0 1 1 76 53290 53365 [AAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCC] HWI-EAS406:7:6:1318:904#0 1 1 76 53291 53366 [ATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAG] HWI-EAS406:5:50:344:275#0 1 1 76 53293 53368 [CTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAA] HWI-EAS406:6:61:536:1994#0 1 1 76 53296 53371 [TCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAG] HWI-EAS406:6:96:1691:1669#0 1 1 76 53297 53372 [CACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGG] HWI-EAS406:6:53:756:1438#0 1 1 76 53298 53373 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:5:32:512:1543#0 1 1 76 53300 53375 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:6:43:1435:823#0 1 1 76 53300 53375 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:6:16:1107:1198#0 1 1 76 53301 53376 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:7:21:1350:1692#0 1 1 76 53301 53376 [CCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCT] HWI-EAS406:6:9:230:1428#0 1 1 76 53302 53377 [TGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTA] HWI-EAS406:7:72:258:511#0 1 1 76 53305 53380 [TCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTG] HWI-EAS406:5:33:1345:1342#0 1 1 76 53309 53384 [TACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGA] HWI-EAS406:6:37:614:157#0 1 1 76 53311 53386 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:5:12:1752:1462#0 1 1 76 53312 53387 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:6:95:1625:892#0 1 1 76 53312 53387 [AAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTG] HWI-EAS406:7:27:354:804#0 1 1 76 53318 53393 [GAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGAC] HWI-EAS406:6:70:639:1667#0 1 1 76 53320 53395 [AATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACC] HWI-EAS406:6:8:832:722#0 1 1 76 53321 53396 [TGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCC] HWI-EAS406:6:12:710:1058#0 1 1 76 53338 53413 [CTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCT] HWI-EAS406:5:68:1604:1414#0 1 1 76 53352 53427 [CAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGA] HWI-EAS406:5:91:987:915#0 1 1 76 53357 53432 [TCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGT] HWI-EAS406:6:5:1149:1954#0 1 1 76 53362 53437 [CTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTA] HWI-EAS406:5:60:619:1662#0 1 1 76 53378 53453 [CTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAA] HWI-EAS406:5:25:738:87#0 1 1 76 53391 53466 [ATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGA] HWI-EAS406:7:41:1398:1465#0 1 1 76 53400 53475 [CGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACA] HWI-EAS406:5:99:882:1541#0 1 1 76 53429 53504 [AAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATG] HWI-EAS406:5:76:867:129#0 1 1 76 53438 53513 [ACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTG] HWI-EAS406:6:2:219:1094#0 1 1 76 53446 53521 [TAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTT] HWI-EAS406:5:58:650:328#0 1 1 76 53452 53527 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:5:45:1430:1123#0 1 1 76 53453 53528 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:7:46:1727:1121#0 1 1 76 53453 53528 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:60:1355:1749#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:72:1061:265#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:7:64:701:178#0 1 1 76 53454 53529 [ACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATG] HWI-EAS406:6:66:935:30#0 1 1 76 53456 53531 [CCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGA] HWI-EAS406:7:90:175:1368#0 1 1 76 53457 53532 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:43:1033:1183#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:86:822:312#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:32:366:1628#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:34:1721:259#0 1 1 76 53459 53534 [ACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGA] HWI-EAS406:7:44:690:1265#0 1 1 76 53462 53537 [CAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATC] HWI-EAS406:5:67:1193:1073#0 1 1 76 53464 53539 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:8:155:1879#0 1 1 76 53465 53540 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:61:892:217#0 1 1 76 53465 53540 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:5:61:1148:844#0 1 1 76 53467 53542 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:6:35:343:246#0 1 1 76 53467 53542 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:5:53:944:1239#0 1 1 76 53468 53543 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:6:19:1066:506#0 1 1 76 53468 53543 [GCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACG] HWI-EAS406:6:10:1058:483#0 1 1 76 53471 53546 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:34:1558:316#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:82:902:561#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:49:1208:1985#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:55:1403:804#0 1 1 76 53473 53548 [AGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT] HWI-EAS406:6:67:1271:1581#0 1 1 76 53475 53550 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:26:1342:1423#0 1 1 76 53476 53551 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:59:1679:1352#0 1 1 76 53476 53551 [AACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTT] HWI-EAS406:6:40:298:405#0 1 1 76 53478 53553 [ACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTG] HWI-EAS406:7:40:1275:154#0 1 1 76 53479 53554 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:5:51:215:588#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:49:1215:1249#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:54:1111:713#0 1 1 76 53480 53555 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:5:58:471:1142#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:6:46:872:636#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:7:81:125:1639#0 1 1 76 53481 53556 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:6:64:68:1338#0 1 1 76 53483 53558 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:7:32:494:1816#0 1 1 76 53483 53558 [GAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGA] HWI-EAS406:7:37:986:1763#0 1 1 76 53486 53561 [AAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGAT] HWI-EAS406:6:60:434:400#0 1 1 76 53487 53562 [AGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATA] HWI-EAS406:7:72:380:1488#0 1 1 76 53488 53563 [GGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGT] HWI-EAS406:7:77:730:1986#0 1 1 76 53490 53565 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:38:1359:674#0 1 1 76 53491 53566 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:40:121:754#0 1 1 76 53491 53566 [GCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAG] HWI-EAS406:6:56:1672:1286#0 1 1 76 53495 53570 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:27:541:285#0 1 1 76 53497 53572 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:67:1267:726#0 1 1 76 53497 53572 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:58:1582:877#0 1 1 76 53498 53573 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:99:799:1909#0 1 1 76 53498 53573 [TCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAA] HWI-EAS406:5:34:903:1119#0 1 1 76 53499 53574 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:5:47:976:760#0 1 1 76 53500 53575 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:6:100:1728:1491#0 1 1 76 53500 53575 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:46:1677:934#0 1 1 76 53501 53576 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:65:1706:1307#0 1 1 76 53501 53576 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:5:40:1473:1219#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:25:1767:760#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:76:655:1635#0 1 1 76 53502 53577 [ATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTA] HWI-EAS406:5:82:1406:593#0 1 1 76 53504 53579 [AGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAA] HWI-EAS406:5:45:1177:936#0 1 1 76 53506 53581 [GATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAG] HWI-EAS406:6:99:1613:1584#0 1 1 76 53507 53582 [ATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGG] HWI-EAS406:5:60:546:1031#0 1 1 76 53508 53583 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:5:28:1177:1079#0 1 1 76 53510 53585 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:6:89:545:1190#0 1 1 76 53510 53585 [ATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAA] HWI-EAS406:5:46:927:1690#0 1 1 76 53511 53586 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:39:1424:980#0 1 1 76 53513 53588 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:48:1636:1321#0 1 1 76 53513 53588 [AAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGT] HWI-EAS406:7:72:421:1226#0 1 1 76 53514 53589 [GTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTG] HWI-EAS406:6:76:763:468#0 1 1 76 53516 53591 [TGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGA] HWI-EAS406:6:28:363:848#0 1 1 76 53520 53595 [TTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGA] HWI-EAS406:6:50:1325:1030#0 1 1 76 53523 53598 [TTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAA] HWI-EAS406:5:60:752:516#0 1 1 76 53526 53601 [ATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAA] HWI-EAS406:7:57:1111:208#0 1 1 76 53529 53604 [TGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAG] HWI-EAS406:7:58:1186:1368#0 1 1 76 53530 53605 [AGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGT] HWI-EAS406:6:38:1203:1137#0 1 1 76 53535 53610 [TGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGAT] HWI-EAS406:7:60:1055:895#0 1 1 76 53542 53617 [GTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAA] HWI-EAS406:5:37:314:959#0 1 1 76 53564 53639 [GTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTT] HWI-EAS406:6:58:1584:1523#0 1 1 76 53577 53652 [AAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCT] HWI-EAS406:7:56:1128:796#0 1 1 76 53584 53659 [TTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCC] HWI-EAS406:5:78:1362:1957#0 1 1 76 53589 53664 [AGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAA] HWI-EAS406:7:26:1321:1340#0 1 1 76 53596 53671 [AGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACC] HWI-EAS406:6:59:1045:1465#0 1 1 76 53598 53673 [GAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAA] HWI-EAS406:6:59:1115:1324#0 1 1 76 53602 53677 [TGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGT] HWI-EAS406:5:44:1561:461#0 1 1 76 53617 53692 [GTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCA] HWI-EAS406:7:7:1186:571#0 1 1 76 53624 53699 [TTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAA] HWI-EAS406:7:61:615:1410#0 1 1 76 53625 53700 [CTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCA] HWI-EAS406:7:32:1742:1156#0 1 1 76 53631 53706 [TCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAG] HWI-EAS406:7:57:904:1288#0 1 1 76 53632 53707 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:57:977:906#0 1 1 76 53633 53708 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:88:469:1148#0 1 1 76 53633 53708 [AGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTG] HWI-EAS406:5:51:343:874#0 1 1 76 53635 53710 [CAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCT] HWI-EAS406:6:44:408:1803#0 1 1 76 53637 53712 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:62:1018:1623#0 1 1 76 53638 53713 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:96:568:2003#0 1 1 76 53638 53713 [TGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAG] HWI-EAS406:7:49:1058:1502#0 1 1 76 53641 53716 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:6:10:647:218#0 1 1 76 53644 53719 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:7:93:191:976#0 1 1 76 53644 53719 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:5:24:806:1332#0 1 1 76 53645 53720 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:7:15:333:1636#0 1 1 76 53645 53720 [GTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTA] HWI-EAS406:5:57:1370:747#0 1 1 76 53646 53721 [TCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACA] HWI-EAS406:5:47:743:680#0 1 1 76 53648 53723 [TTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGC] HWI-EAS406:5:67:696:746#0 1 1 76 53652 53727 [TGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCT] HWI-EAS406:7:18:266:1402#0 1 1 76 53653 53728 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:5:51:775:1299#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:6:32:153:1345#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:7:49:1150:1267#0 1 1 76 53654 53729 [TCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTG] HWI-EAS406:6:64:1753:1014#0 1 1 76 53656 53731 [CTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTG] HWI-EAS406:6:17:1691:707#0 1 1 76 53660 53735 [CCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGA] HWI-EAS406:6:79:633:863#0 1 1 76 53663 53738 [CTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAA] HWI-EAS406:5:34:1333:412#0 1 1 76 53664 53739 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:5:15:969:1042#0 1 1 76 53665 53740 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:7:97:1167:280#0 1 1 76 53665 53740 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:36:518:679#0 1 1 76 53666 53741 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:54:1741:1277#0 1 1 76 53666 53741 [TGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAA] HWI-EAS406:7:81:166:408#0 1 1 76 53668 53743 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:49:1567:1190#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:63:726:607#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:45:510:1638#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:98:1520:1892#0 1 1 76 53670 53745 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:6:32:504:1203#0 1 1 76 53671 53746 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:7:19:498:1997#0 1 1 76 53671 53746 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:61:1174:249#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:76:612:158#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:7:4:1433:1399#0 1 1 76 53672 53747 [CCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAG] HWI-EAS406:7:80:183:999#0 1 1 76 53673 53748 [CAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGT] HWI-EAS406:6:32:1074:1880#0 1 1 76 53674 53749 [AAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTG] HWI-EAS406:5:4:486:796#0 1 1 76 53675 53750 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:5:63:1031:1371#0 1 1 76 53676 53751 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:6:23:1233:1354#0 1 1 76 53676 53751 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:5:24:218:423#0 1 1 76 53677 53752 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:7:78:154:1954#0 1 1 76 53677 53752 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:5:53:918:295#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:6:66:225:1404#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:32:1665:1736#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:62:115:769#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:71:782:789#0 1 1 76 53678 53753 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:5:5:1378:1611#0 1 1 76 53680 53755 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:7:10:256:644#0 1 1 76 53680 53755 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:27:114:140#0 1 1 76 53681 53756 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:65:176:624#0 1 1 76 53681 53756 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:46:949:1239#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:60:668:521#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:64:755:266#0 1 1 76 53682 53757 [ATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAG] HWI-EAS406:6:26:366:1585#0 1 1 76 53683 53758 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:1:1496:199#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:65:902:1012#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:62:339:319#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:91:1443:1906#0 1 1 76 53685 53760 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:5:50:1573:914#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:16:1511:680#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:31:178:391#0 1 1 76 53686 53761 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:5:34:406:871#0 1 1 76 53687 53762 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:6:79:753:185#0 1 1 76 53687 53762 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:5:5:1322:609#0 1 1 76 53688 53763 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:7:64:1248:1852#0 1 1 76 53688 53763 [GGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAA] HWI-EAS406:5:54:375:1950#0 1 1 76 53690 53765 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:5:57:1380:1653#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:56:338:1451#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:91:732:153#0 1 1 76 53692 53767 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:30:214:1194#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:74:1142:986#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:38:1357:1075#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:44:1020:1099#0 1 1 76 53693 53768 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:52:251:1614#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:86:1056:870#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:7:66:619:1649#0 1 1 76 53694 53769 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:72:758:676#0 1 1 76 53695 53770 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:74:752:1474#0 1 1 76 53695 53770 [TTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCA] HWI-EAS406:6:22:502:1518#0 1 1 76 53696 53771 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:31:1307:1856#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1567:1793#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1568:1795#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:7:44:828:1712#0 1 1 76 53697 53772 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:6:43:697:1975#0 1 1 76 53698 53773 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:7:37:1626:1745#0 1 1 76 53698 53773 [AAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCA] HWI-EAS406:6:70:1399:930#0 1 1 76 53699 53774 [AGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCAT] HWI-EAS406:5:62:689:1420#0 1 1 76 53700 53775 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:22:290:747#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:62:1222:999#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:34:460:1182#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:60:1445:1659#0 1 1 76 53702 53777 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:5:23:816:1245#0 1 1 76 53703 53778 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:7:98:652:1996#0 1 1 76 53703 53778 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:6:36:567:1926#0 1 1 76 53704 53779 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:7:75:667:566#0 1 1 76 53704 53779 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:21:1467:217#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:46:494:1335#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:6:44:574:183#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:7:85:784:1509#0 1 1 76 53705 53780 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:45:1699:1798#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:61:259:848#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:7:82:1487:989#0 1 1 76 53707 53782 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:44:799:1472#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:96:1345:1148#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:2:556:1588#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:40:1121:575#0 1 1 76 53708 53783 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:5:80:187:1669#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:6:42:995:1699#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:7:1:1151:1039#0 1 1 76 53709 53784 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:6:20:1380:749#0 1 1 76 53710 53785 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:7:68:1531:2000#0 1 1 76 53710 53785 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:6:172:756#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:83:1402:1552#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:97:211:1856#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:7:34:732:1499#0 1 1 76 53711 53786 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:31:1051:1941#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:72:16:734#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:6:18:1773:1683#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:7:62:201:660#0 1 1 76 53712 53787 [AGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATG] HWI-EAS406:6:38:1593:715#0 1 1 76 53713 53788 [GAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGT] HWI-EAS406:7:82:498:1137#0 1 1 76 53714 53789 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:6:16:786:304#0 1 1 76 53715 53790 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:7:62:987:306#0 1 1 76 53715 53790 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:6:39:548:1099#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:1:1505:1228#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:96:854:764#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:98:1214:1724#0 1 1 76 53716 53791 [AAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGA] HWI-EAS406:7:51:262:874#0 1 1 76 53717 53792 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:4:1419:1401#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:76:1374:135#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:6:56:234:1355#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:7:99:1407:1195#0 1 1 76 53718 53793 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:5:63:1022:1714#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:22:1111:1486#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:23:1173:1393#0 1 1 76 53721 53796 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:8:1504:449#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:23:1015:1090#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:80:295:924#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:86:1016:1150#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:18:286:633#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:52:551:770#0 1 1 76 53722 53797 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:5:92:222:1504#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:41:1220:1625#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:64:1773:1523#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:41:178:512#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:57:1245:950#0 1 1 76 53723 53798 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:13:1239:1827#0 1 1 76 53724 53799 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:50:1129:1025#0 1 1 76 53724 53799 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:58:544:1826#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:76:1770:835#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:2:1239:530#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:49:1558:1668#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:76:1322:2034#0 1 1 76 53726 53801 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:13:1139:793#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:25:1401:279#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:43:611:94#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:59:320:1125#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:36:1288:532#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:57:120:1826#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:93:937:626#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:7:34:854:831#0 1 1 76 53727 53802 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:5:24:350:1606#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:6:29:1254:1093#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:34:439:850#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:66:98:814#0 1 1 76 53728 53803 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:5:23:48:2016#0 1 1 76 53729 53804 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:6:87:506:1983#0 1 1 76 53729 53804 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:41:1175:1092#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:79:488:597#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:6:47:1352:1849#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:32:287:1824#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:46:103:1917#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:75:1152:938#0 1 1 76 53730 53805 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:26:1440:278#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:28:373:1728#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:69:96:355#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:6:23:600:781#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:7:32:1118:1144#0 1 1 76 53731 53806 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:1:841:1431#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:37:1200:270#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:68:506:1220#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:25:945:552#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:61:1483:374#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:65:1250:212#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:94:1427:1380#0 1 1 76 53732 53807 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:5:25:264:1466#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:6:84:595:1097#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:7:57:1363:1464#0 1 1 76 53733 53808 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:17:785:1676#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:79:760:1454#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:85:1239:1869#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:65:31:1244#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:99:858:1834#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:7:87:1110:181#0 1 1 76 53734 53809 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:5:39:824:753#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:6:95:1374:274#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:7:98:1702:780#0 1 1 76 53735 53810 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:5:8:1037:1569#0 1 1 76 53736 53811 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:6:46:1413:1388#0 1 1 76 53736 53811 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:23:1734:1243#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:41:1134:841#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:97:878:1045#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:6:52:408:1247#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:7:24:891:1738#0 1 1 76 53737 53812 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:5:72:815:1360#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:6:2:1349:1131#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:7:100:1432:1673#0 1 1 76 53738 53813 [AGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCT] HWI-EAS406:7:99:663:941#0 1 1 76 53739 53814 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:33:969:1266#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:56:1399:1209#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:1:570:1171#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:20:538:1974#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:36:1481:568#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:70:460:922#0 1 1 76 53741 53816 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:5:53:674:1771#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:41:1313:937#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:63:250:1453#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:3:584:2021#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:56:1367:1533#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:72:1445:1348#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:76:1312:1734#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:95:1543:1168#0 1 1 76 53742 53817 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:60:1107:1118#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:64:81:1379#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:68:1426:356#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:7:42:569:1573#0 1 1 76 53743 53818 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:5:53:1583:925#0 1 1 76 53744 53819 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:6:53:1027:1510#0 1 1 76 53744 53819 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:5:72:1317:148#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:6:261:208#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:43:1038:1753#0 1 1 76 53745 53820 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:27:600:1166#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:75:1673:1588#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:6:32:1188:1603#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:7:28:1234:1172#0 1 1 76 53746 53821 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:28:294:470#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:32:1732:1461#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:67:1690:1587#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:98:1438:220#0 1 1 76 53747 53822 [GTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGT] HWI-EAS406:6:81:1704:1251#0 1 1 76 53748 53823 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:5:66:939:722#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:5:940:714#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:74:245:845#0 1 1 76 53749 53824 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:16:1751:1337#0 1 1 76 53750 53825 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:92:1250:1878#0 1 1 76 53750 53825 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:5:7:150:937#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:6:45:698:675#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:56:106:152#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:92:53:1655#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:93:900:1917#0 1 1 76 53751 53826 [AGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTA] HWI-EAS406:7:82:1176:398#0 1 1 76 53752 53827 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:7:230:370#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:63:1577:1760#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:61:1184:1226#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:85:690:1531#0 1 1 76 53753 53828 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:27:956:983#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:45:963:1325#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:6:35:380:1287#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:7:54:1221:1597#0 1 1 76 53754 53829 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:5:58:1337:1843#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:45:1177:1809#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:100:568:843#0 1 1 76 53755 53830 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:31:349:1472#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:87:1211:787#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:13:777:1410#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:50:1751:1006#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:64:1425:835#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:73:1117:1512#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:79:473:1944#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:92:617:442#0 1 1 76 53756 53831 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:5:55:535:693#0 1 1 76 53757 53832 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:6:12:1010:1013#0 1 1 76 53757 53832 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:5:41:1064:662#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:36:964:919#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:75:617:687#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:7:80:1003:1446#0 1 1 76 53758 53833 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:5:82:56:1669#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:6:68:1701:1310#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:11:1314:1766#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:41:1106:2023#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:86:97:1248#0 1 1 76 53759 53834 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:8:590:1396#0 1 1 76 53760 53835 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:57:494:1164#0 1 1 76 53760 53835 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:5:57:1162:1145#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:37:1396:1876#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:65:362:1148#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:73:759:1170#0 1 1 76 53762 53837 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:63:1627:1085#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:67:81:493#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:7:76:1055:1562#0 1 1 76 53763 53838 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:5:75:1787:1708#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:30:698:510#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:32:1554:1024#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:74:1226:1465#0 1 1 76 53764 53839 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:7:784:1208#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:9:1546:1495#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:50:1176:969#0 1 1 76 53765 53840 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:1:1384:988#0 1 1 76 53766 53841 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:20:1449:626#0 1 1 76 53766 53841 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:65:1660:1360#0 1 1 76 53767 53842 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:90:1094:640#0 1 1 76 53767 53842 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:5:64:410:1688#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:6:26:1655:589#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:7:15:249:260#0 1 1 76 53768 53843 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:5:62:793:1138#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:52:1345:1732#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:66:886:2012#0 1 1 76 53769 53844 [CATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAG] HWI-EAS406:5:29:1101:1077#0 1 1 76 53770 53845 [ATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGA] HWI-EAS406:7:33:1565:1058#0 1 1 76 53771 53846 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:2:1040:467#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:36:215:9#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:7:28:569:749#0 1 1 76 53772 53847 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:5:18:973:721#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:11:509:961#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:14:970:1656#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:7:82:1505:741#0 1 1 76 53774 53849 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:6:57:73:1057#0 1 1 76 53775 53850 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:7:36:1184:1732#0 1 1 76 53775 53850 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:25:1080:188#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:64:1369:1981#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:69:479:1105#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:6:54:572:549#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1231:1579#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1232:1581#0 1 1 76 53776 53851 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:57:1570:888#0 1 1 76 53777 53852 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:74:854:1005#0 1 1 76 53777 53852 [ATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGG] HWI-EAS406:7:34:1270:343#0 1 1 76 53778 53853 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:6:56:668:1304#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:7:856:1930#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:45:888:1476#0 1 1 76 53780 53855 [CTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCAT] HWI-EAS406:6:42:851:734#0 1 1 76 53781 53856 [TTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATG] HWI-EAS406:5:3:257:2029#0 1 1 76 53782 53857 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:5:61:413:819#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:54:1631:1840#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:71:1463:1169#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:60:288:561#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:94:426:1935#0 1 1 76 53784 53859 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:5:19:1741:929#0 1 1 76 53785 53860 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:6:38:416:1575#0 1 1 76 53785 53860 [ATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGA] HWI-EAS406:6:53:405:1635#0 1 1 76 53786 53861 [TGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGAT] HWI-EAS406:5:22:210:1199#0 1 1 76 53787 53862 [GTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATT] HWI-EAS406:6:32:1464:1827#0 1 1 76 53788 53863 [TGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCT] HWI-EAS406:6:42:812:1517#0 1 1 76 53790 53865 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:56:536:422#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:63:1786:1961#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:6:23:416:682#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:7:3:459:561#0 1 1 76 53797 53872 [CAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATG] HWI-EAS406:6:96:1108:351#0 1 1 76 53798 53873 [AATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGA] HWI-EAS406:5:12:1631:691#0 1 1 76 53799 53874 [TACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGT] HWI-EAS406:5:6:1567:1249#0 1 1 76 53801 53876 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:27:1287:974#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:37:1042:502#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:59:719:958#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:66:739:603#0 1 1 76 53803 53878 [AACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCA] HWI-EAS406:7:60:332:120#0 1 1 76 53804 53879 [ACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAA] HWI-EAS406:6:80:1253:591#0 1 1 76 53805 53880 [CAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAAT] HWI-EAS406:5:21:737:693#0 1 1 76 53806 53881 [AATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATG] HWI-EAS406:7:22:637:138#0 1 1 76 53807 53882 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:6:63:1509:846#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:2:1085:1217#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:57:1366:484#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:72:146:631#0 1 1 76 53808 53883 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:5:84:1120:1798#0 1 1 76 53809 53884 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:7:100:1230:665#0 1 1 76 53809 53884 [TTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCA] HWI-EAS406:5:44:828:1385#0 1 1 76 53810 53885 [TCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCAT] HWI-EAS406:6:30:371:1827#0 1 1 76 53811 53886 [CCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATC] HWI-EAS406:6:22:246:261#0 1 1 76 53812 53887 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:62:214:1434#0 1 1 76 53814 53889 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:99:593:171#0 1 1 76 53814 53889 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:5:43:1427:1753#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:6:15:1088:326#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:16:616:1762#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:22:193:2002#0 1 1 76 53815 53890 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:5:19:257:841#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:6:22:840:86#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:7:46:1792:706#0 1 1 76 53816 53891 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:6:29:1368:1637#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:54:1378:1220#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:72:1195:1707#0 1 1 76 53817 53892 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:6:29:705:301#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:51:1007:1854#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:71:1350:990#0 1 1 76 53818 53893 [GATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGA] HWI-EAS406:5:24:253:1153#0 1 1 76 53819 53894 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:23:1411:1888#0 1 1 76 53820 53895 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:64:723:1674#0 1 1 76 53820 53895 [TGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGG] HWI-EAS406:7:2:673:1691#0 1 1 76 53821 53896 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:5:76:1155:837#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:6:94:469:788#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:37:643:1364#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:53:289:1408#0 1 1 76 53822 53897 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:6:45:1044:1420#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:40:710:746#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:100:490:1435#0 1 1 76 53824 53899 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:5:13:1725:407#0 1 1 76 53825 53900 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:7:52:149:487#0 1 1 76 53825 53900 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:5:60:1672:59#0 1 1 76 53826 53901 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:6:63:145:1161#0 1 1 76 53826 53901 [AGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGAT] HWI-EAS406:6:18:478:238#0 1 1 76 53827 53902 [GCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATG] HWI-EAS406:5:21:470:772#0 1 1 76 53828 53903 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:45:1121:616#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:62:1614:199#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:92:645:1588#0 1 1 76 53829 53904 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:31:952:221#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:63:1577:1631#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:68:1329:1923#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:100:546:1586#0 1 1 76 53831 53906 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:43:1089:1589#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:99:778:1477#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:6:22:247:1686#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:7:71:167:549#0 1 1 76 53832 53907 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:5:14:1082:1432#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:6:8:1319:401#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:7:61:615:223#0 1 1 76 53833 53908 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:5:15:1128:400#0 1 1 76 53834 53909 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:6:64:715:621#0 1 1 76 53834 53909 [AGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGA] HWI-EAS406:7:3:437:1420#0 1 1 76 53835 53910 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:5:95:712:892#0 1 1 76 53836 53911 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:7:99:1012:428#0 1 1 76 53836 53911 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:6:79:160:1028#0 1 1 76 53837 53912 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:7:65:502:1307#0 1 1 76 53837 53912 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:5:23:87:1049#0 1 1 76 53838 53913 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:7:27:559:906#0 1 1 76 53838 53913 [GAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAA] HWI-EAS406:5:44:1725:701#0 1 1 76 53839 53914 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:6:26:652:624#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:23:313:1514#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:28:269:575#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:42:1472:1659#0 1 1 76 53840 53915 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:5:61:1585:978#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:27:843:932#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:38:823:1504#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:7:67:242:1611#0 1 1 76 53841 53916 [GGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTA] HWI-EAS406:6:100:484:1453#0 1 1 76 53842 53917 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:21:1256:322#0 1 1 76 53843 53918 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:42:1590:1503#0 1 1 76 53843 53918 [AGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGA] HWI-EAS406:6:15:1098:1313#0 1 1 76 53844 53919 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:19:167:915#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:28:962:855#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:10:402:1387#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:22:507:446#0 1 1 76 53846 53921 [TGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGA] HWI-EAS406:7:79:69:1069#0 1 1 76 53847 53922 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:17:476:1819#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:59:1763:1643#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:99:1068:1770#0 1 1 76 53848 53923 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:6:42:1573:1130#0 1 1 76 53849 53924 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:7:60:983:768#0 1 1 76 53849 53924 [AGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCA] HWI-EAS406:6:90:733:843#0 1 1 76 53851 53926 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:5:13:1589:766#0 1 1 76 53852 53927 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:6:88:744:2026#0 1 1 76 53852 53927 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:6:72:914:1448#0 1 1 76 53853 53928 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:7:32:122:1425#0 1 1 76 53853 53928 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:6:30:639:1010#0 1 1 76 53854 53929 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:7:85:958:1700#0 1 1 76 53854 53929 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:5:98:1773:1289#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:27:634:898#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:96:546:1947#0 1 1 76 53856 53931 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:5:88:652:1575#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:6:37:1580:1320#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:7:51:1088:1628#0 1 1 76 53861 53936 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:44:265:1232#0 1 1 76 53862 53937 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:62:909:1646#0 1 1 76 53862 53937 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:6:69:851:1815#0 1 1 76 53863 53938 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:7:20:1140:1641#0 1 1 76 53863 53938 [CTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACAC] HWI-EAS406:5:59:925:1704#0 1 1 76 53864 53939 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:5:18:1269:245#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:6:64:121:1069#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:7:91:277:970#0 1 1 76 53865 53940 [TACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTA] HWI-EAS406:5:47:714:1498#0 1 1 76 53866 53941 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:5:13:1230:1478#0 1 1 76 53868 53943 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:6:19:771:764#0 1 1 76 53868 53943 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:52:138:1695#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:66:1153:1644#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:34:85:723#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:39:45:1058#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:43:1182:1989#0 1 1 76 53869 53944 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:6:57:137:1673#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:28:1513:1071#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:45:837:1484#0 1 1 76 53870 53945 [TGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGT] HWI-EAS406:7:94:1160:1729#0 1 1 76 53872 53947 [GAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTG] HWI-EAS406:6:99:704:55#0 1 1 76 53873 53948 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:6:1448:1278#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:10:451:1596#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:6:5:671:1670#0 1 1 76 53875 53950 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:6:6:1434:396#0 1 1 76 53876 53951 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:7:29:875:1895#0 1 1 76 53876 53951 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:11:1540:1268#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:57:413:1041#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:6:74:1277:1557#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:7:53:362:1259#0 1 1 76 53877 53952 [CAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTT] HWI-EAS406:5:72:857:1226#0 1 1 76 53878 53953 [AATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTG] HWI-EAS406:5:60:340:831#0 1 1 76 53879 53954 [ATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGG] HWI-EAS406:7:90:1254:1384#0 1 1 76 53880 53955 [TGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGA] HWI-EAS406:6:77:527:1198#0 1 1 76 53881 53956 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:6:80:854:939#0 1 1 76 53882 53957 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:7:60:1164:1144#0 1 1 76 53882 53957 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:25:1359:1399#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:76:172:769#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:96:618:1648#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:7:59:1626:278#0 1 1 76 53883 53958 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:44:1270:2024#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:77:476:271#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:7:96:1622:1184#0 1 1 76 53884 53959 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:5:82:1188:1438#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:6:34:347:355#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:70:1117:1195#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:75:1591:977#0 1 1 76 53885 53960 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:45:1223:507#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:67:287:642#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:6:53:1626:1349#0 1 1 76 53886 53961 [ATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGG] HWI-EAS406:7:40:286:1590#0 1 1 76 53888 53963 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:5:6:780:1095#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:6:60:1547:993#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:7:31:1086:1440#0 1 1 76 53889 53964 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:5:1:642:862#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:76:80:1186#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:99:491:978#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:7:60:791:701#0 1 1 76 53890 53965 [CAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTAT] HWI-EAS406:7:74:1435:300#0 1 1 76 53891 53966 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:38:821:581#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:79:1780:301#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:7:44:716:1690#0 1 1 76 53892 53967 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:5:91:190:349#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:6:25:917:360#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:7:39:1580:1695#0 1 1 76 53894 53969 [GGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA] HWI-EAS406:6:35:956:908#0 1 1 76 53895 53970 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:5:32:575:1795#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:6:32:600:1560#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:7:34:778:1836#0 1 1 76 53896 53971 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:29:896:170#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:37:639:1793#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:54:1271:294#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:57:1360:735#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:6:72:220:632#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:7:22:1124:121#0 1 1 76 53898 53973 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:5:33:1187:1504#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:62:514:1656#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:86:788:1355#0 1 1 76 53899 53974 [ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAG] HWI-EAS406:5:54:783:1748#0 1 1 76 53901 53976 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:21:317:1316#0 1 1 76 53902 53977 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:80:825:174#0 1 1 76 53902 53977 [GTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTC] HWI-EAS406:7:63:1279:329#0 1 1 76 53903 53978 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:5:80:1428:269#0 1 1 76 53904 53979 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:6:65:1244:1471#0 1 1 76 53904 53979 [TCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTC] HWI-EAS406:6:53:192:736#0 1 1 76 53905 53980 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:5:92:49:1461#0 1 1 76 53906 53981 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:7:54:281:668#0 1 1 76 53906 53981 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:17:1119:477#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:19:1478:1281#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:6:60:634:1666#0 1 1 76 53907 53982 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:14:1203:1035#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1420:1500#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1422:1501#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:6:25:1163:723#0 1 1 76 53908 53983 [GAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCG] HWI-EAS406:6:98:883:1692#0 1 1 76 53909 53984 [AGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGA] HWI-EAS406:7:49:630:1898#0 1 1 76 53910 53985 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:40:1573:1541#0 1 1 76 53911 53986 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:72:730:185#0 1 1 76 53911 53986 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:41:749:946#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:81:1134:1986#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:91:1360:1610#0 1 1 76 53912 53987 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:5:44:1317:939#0 1 1 76 53913 53988 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:6:12:98:266#0 1 1 76 53913 53988 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:5:19:421:380#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:70:1220:1053#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:98:834:906#0 1 1 76 53915 53990 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:5:93:115:709#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:26:728:691#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:61:455:1037#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:79:179:1965#0 1 1 76 53916 53991 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:8:727:453#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:64:879:634#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:80:1491:1809#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:7:52:178:742#0 1 1 76 53917 53992 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:5:41:1062:1929#0 1 1 76 53918 53993 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:6:31:1747:623#0 1 1 76 53918 53993 [AGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGC] HWI-EAS406:6:78:186:1663#0 1 1 76 53919 53994 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:20:440:744#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:57:1309:1980#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:58:664:1615#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:6:78:993:297#0 1 1 76 53920 53995 [GATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTA] HWI-EAS406:6:60:1220:1711#0 1 1 76 53921 53996 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:47:519:669#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:71:834:558#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:6:42:1752:501#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:7:92:1198:1990#0 1 1 76 53922 53997 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:5:71:1586:762#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:6:98:77:1185#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:56:381:873#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:84:723:1477#0 1 1 76 53923 53998 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:37:263:1790#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:42:132:1471#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:6:73:141:1610#0 1 1 76 53924 53999 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:88:569:1377#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:97:586:928#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:14:564:751#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:98:1335:438#0 1 1 76 53925 54000 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:5:72:1090:782#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:6:42:1711:392#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:3:1582:445#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:34:922:852#0 1 1 76 53926 54001 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:6:11:1488:353#0 1 1 76 53927 54002 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:7:68:172:914#0 1 1 76 53927 54002 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:5:38:475:1202#0 1 1 76 53928 54003 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:7:97:572:717#0 1 1 76 53928 54003 [AAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGC] HWI-EAS406:5:72:1652:1326#0 1 1 76 53929 54004 [GCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTT] HWI-EAS406:6:86:744:1804#0 1 1 76 53931 54006 [CTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTG] HWI-EAS406:7:92:1168:291#0 1 1 76 53932 54007 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:6:89:754:1507#0 1 1 76 53933 54008 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:7:48:639:610#0 1 1 76 53933 54008 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:25:1067:1627#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:82:372:919#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:6:27:428:893#0 1 1 76 53934 54009 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:6:1055:1189#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:94:235:1499#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:13:128:1692#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:99:198:1261#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:7:35:1019:1849#0 1 1 76 53935 54010 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:5:96:75:1459#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:12:613:2015#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:50:1410:1118#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:56:167:925#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:91:1633:1695#0 1 1 76 53936 54011 [CACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCC] HWI-EAS406:6:20:1297:1560#0 1 1 76 53937 54012 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:47:1430:499#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:67:90:1899#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:52:1183:1187#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:57:146:1555#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:83:588:330#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:7:17:987:818#0 1 1 76 53938 54013 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:6:70:588:639#0 1 1 76 53939 54014 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:7:33:1112:1882#0 1 1 76 53939 54014 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:11:833:1953#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:61:976:940#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:89:403:309#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:44:1423:985#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:62:1723:212#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:65:390:1548#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:83:1477:427#0 1 1 76 53940 54015 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:6:6:58:608#0 1 1 76 53941 54016 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:7:50:641:1459#0 1 1 76 53941 54016 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:6:82:542:1980#0 1 1 76 53942 54017 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:7:34:1283:493#0 1 1 76 53942 54017 [CTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTC] HWI-EAS406:5:81:225:724#0 1 1 76 53943 54018 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:3:717:1798#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:31:921:1750#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:42:150:711#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:4:434:33#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:56:416:1068#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:99:54:1548#0 1 1 76 53944 54019 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:19:1381:347#0 1 1 76 53945 54020 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:51:1338:736#0 1 1 76 53945 54020 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:5:75:621:276#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:10:1296:1244#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:71:1579:888#0 1 1 76 53946 54021 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:23:812:1012#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:78:102:1558#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:87:525:1809#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:31:471:759#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:79:1344:2004#0 1 1 76 53948 54023 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:5:49:98:2023#0 1 1 76 53949 54024 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:6:59:1152:522#0 1 1 76 53949 54024 [TCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCA] HWI-EAS406:7:49:1313:762#0 1 1 76 53950 54025 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:6:54:1459:1963#0 1 1 76 53952 54027 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:7:11:1488:1455#0 1 1 76 53952 54027 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:6:36:677:155#0 1 1 76 53953 54028 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:7:38:394:837#0 1 1 76 53953 54028 [GGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGA] HWI-EAS406:5:59:1281:1521#0 1 1 76 53954 54029 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:5:53:897:165#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:30:553:918#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:54:1063:1707#0 1 1 76 53955 54030 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:5:83:390:1898#0 1 1 76 53956 54031 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:6:35:1663:440#0 1 1 76 53956 54031 [CTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCT] HWI-EAS406:5:77:61:1345#0 1 1 76 53958 54033 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:52:441:826#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:55:1378:1320#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:91:648:2026#0 1 1 76 53959 54034 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:44:1324:176#0 1 1 76 53960 54035 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:81:477:1340#0 1 1 76 53960 54035 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:43:553:1574#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:45:822:373#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:6:29:1105:782#0 1 1 76 53961 54036 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:40:723:1752#0 1 1 76 53963 54038 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:45:744:896#0 1 1 76 53963 54038 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:5:37:380:576#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:38:682:1903#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:83:1387:772#0 1 1 76 53965 54040 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:5:43:562:1255#0 1 1 76 53966 54041 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:7:93:809:856#0 1 1 76 53966 54041 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:5:29:1156:1834#0 1 1 76 53967 54042 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:7:41:697:849#0 1 1 76 53967 54042 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:5:83:778:1358#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:20:906:418#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:50:1396:1687#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:7:75:936:1547#0 1 1 76 53968 54043 [GAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTC] HWI-EAS406:6:89:161:1255#0 1 1 76 53969 54044 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:5:57:482:1642#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:41:1677:1966#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:74:117:759#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:75:432:1382#0 1 1 76 53970 54045 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:5:26:291:1912#0 1 1 76 53971 54046 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:7:32:1615:1525#0 1 1 76 53971 54046 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:40:1352:1869#0 1 1 76 53972 54047 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:70:809:1723#0 1 1 76 53972 54047 [AAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTA] HWI-EAS406:5:3:949:714#0 1 1 76 53973 54048 [AGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACA] HWI-EAS406:7:9:312:19#0 1 1 76 53975 54050 [GTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAA] HWI-EAS406:6:9:1731:1120#0 1 1 76 53976 54051 [TCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAG] HWI-EAS406:6:1:547:479#0 1 1 76 53977 54052 [TCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAA] HWI-EAS406:7:99:61:1603#0 1 1 76 53979 54054 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:6:60:1243:1365#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:4:121:689#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:93:1081:97#0 1 1 76 53980 54055 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:5:26:1615:1713#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:41:1043:1255#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:72:103:1770#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:7:99:1349:604#0 1 1 76 53981 54056 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:6:97:767:1015#0 1 1 76 53982 54057 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:7:53:77:1051#0 1 1 76 53982 54057 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:5:62:1300:1371#0 1 1 76 53983 54058 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:6:55:1719:1387#0 1 1 76 53983 54058 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:5:5:288:1125#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:6:39:962:1973#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:7:54:273:2027#0 1 1 76 53984 54059 [TTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGA] HWI-EAS406:7:100:1344:902#0 1 1 76 53986 54061 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:14:663:1252#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:50:1119:948#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:6:51:1647:1653#0 1 1 76 53987 54062 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:6:38:1233:1247#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:51:1241:662#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:76:446:1078#0 1 1 76 53989 54064 [GGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCT] HWI-EAS406:7:79:1686:963#0 1 1 76 53990 54065 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:49:1457:1100#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:68:171:1825#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:67:1555:2010#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:78:1460:1502#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:7:7:751:1141#0 1 1 76 53991 54066 [AGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCT] HWI-EAS406:5:75:1183:269#0 1 1 76 53992 54067 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:17:1630:1064#0 1 1 76 53993 54068 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:93:671:1034#0 1 1 76 53993 54068 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:6:43:1683:1051#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:62:1392:285#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:65:472:1193#0 1 1 76 53994 54069 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:30:1353:1081#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:68:299:782#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:6:58:300:1064#0 1 1 76 53995 54070 [AGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGG] HWI-EAS406:5:4:156:941#0 1 1 76 53996 54071 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:32:267:147#0 1 1 76 53997 54072 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:38:1541:1446#0 1 1 76 53997 54072 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:5:20:720:1400#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:6:35:677:1778#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:7:90:983:632#0 1 1 76 53998 54073 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:5:63:928:1410#0 1 1 76 54000 54075 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:6:10:305:1638#0 1 1 76 54000 54075 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:55:859:984#0 1 1 76 54002 54077 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:94:749:1858#0 1 1 76 54002 54077 [GCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGC] HWI-EAS406:5:37:1539:1116#0 1 1 76 54003 54078 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:16:1287:1466#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:48:1089:706#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:54:177:1301#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:6:38:1374:1426#0 1 1 76 54005 54080 [TGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGA] HWI-EAS406:7:6:1282:521#0 1 1 76 54006 54081 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:6:2:433:1863#0 1 1 76 54007 54082 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:7:7:1105:730#0 1 1 76 54007 54082 [ATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATC] HWI-EAS406:6:70:480:304#0 1 1 76 54008 54083 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:38:94:1030#0 1 1 76 54009 54084 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:65:1234:1621#0 1 1 76 54009 54084 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:5:28:1247:1588#0 1 1 76 54010 54085 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:6:53:1468:1857#0 1 1 76 54010 54085 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:31:1752:791#0 1 1 76 54011 54086 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:41:1143:1859#0 1 1 76 54011 54086 [CTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTC] HWI-EAS406:6:35:1486:1808#0 1 1 76 54012 54087 [TTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCA] HWI-EAS406:5:37:281:275#0 1 1 76 54013 54088 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:35:1411:1805#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:75:1704:1134#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:6:79:577:1487#0 1 1 76 54014 54089 [TGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGT] HWI-EAS406:5:46:1694:1456#0 1 1 76 54015 54090 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:6:41:1700:2005#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:47:370:1388#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:68:53:843#0 1 1 76 54016 54091 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:5:25:1521:1357#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:6:69:1289:763#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:7:73:484:1824#0 1 1 76 54018 54093 [TGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAG] HWI-EAS406:5:35:539:902#0 1 1 76 54019 54094 [TTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTA] HWI-EAS406:7:49:1156:238#0 1 1 76 54021 54096 [TGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTAC] HWI-EAS406:5:70:1312:1703#0 1 1 76 54022 54097 [CAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCC] HWI-EAS406:5:30:1054:1157#0 1 1 76 54024 54099 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:5:29:1569:363#0 1 1 76 54025 54100 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:7:54:1658:1211#0 1 1 76 54025 54100 [AAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTG] HWI-EAS406:7:57:459:506#0 1 1 76 54026 54101 [GAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTG] HWI-EAS406:6:65:1675:1051#0 1 1 76 54028 54103 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:5:8:1221:662#0 1 1 76 54029 54104 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:7:59:1524:1978#0 1 1 76 54029 54104 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:60:1591:1383#0 1 1 76 54031 54106 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:61:662:313#0 1 1 76 54031 54106 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:28:1721:526#0 1 1 76 54036 54111 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:79:947:2033#0 1 1 76 54036 54111 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:6:46:1601:1005#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:51:154:262#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:79:1464:344#0 1 1 76 54037 54112 [TCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGA] HWI-EAS406:7:82:855:1925#0 1 1 76 54039 54114 [CACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAG] HWI-EAS406:7:3:1094:1673#0 1 1 76 54040 54115 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:5:12:1619:1515#0 1 1 76 54041 54116 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:6:65:331:1333#0 1 1 76 54041 54116 [CTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGA] HWI-EAS406:5:62:192:1866#0 1 1 76 54042 54117 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:3:1065:1215#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:15:1564:1353#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:7:42:666:1287#0 1 1 76 54044 54119 [AGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCT] HWI-EAS406:6:50:757:1696#0 1 1 76 54045 54120 [GTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTC] HWI-EAS406:6:58:1422:1798#0 1 1 76 54046 54121 [ACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCC] HWI-EAS406:5:65:798:193#0 1 1 76 54048 54123 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:53:603:1620#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:64:1755:1587#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:7:57:866:497#0 1 1 76 54050 54125 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:5:68:897:1716#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:27:1416:776#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:45:1583:1140#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:50:873:1753#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:7:41:62:1152#0 1 1 76 54051 54126 [GAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTG] HWI-EAS406:6:39:1044:1768#0 1 1 76 54052 54127 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:5:8:722:814#0 1 1 76 54053 54128 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:7:42:1413:1613#0 1 1 76 54053 54128 [AGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAA] HWI-EAS406:5:83:1427:841#0 1 1 76 54054 54129 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:6:3:323:1911#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:50:1535:1600#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:77:63:1840#0 1 1 76 54055 54130 [GTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGAT] HWI-EAS406:6:73:792:159#0 1 1 76 54057 54132 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:6:52:215:151#0 1 1 76 54058 54133 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:7:57:1335:1367#0 1 1 76 54058 54133 [AGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTG] HWI-EAS406:7:99:1532:1321#0 1 1 76 54059 54134 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:5:35:447:1409#0 1 1 76 54060 54135 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:6:37:1685:923#0 1 1 76 54060 54135 [ACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGA] HWI-EAS406:5:8:236:766#0 1 1 76 54061 54136 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:5:82:977:1482#0 1 1 76 54062 54137 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:6:95:275:559#0 1 1 76 54062 54137 [TCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAG] HWI-EAS406:7:15:625:809#0 1 1 76 54063 54138 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:8:3:842#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:67:1600:789#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:88:187:646#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:7:81:267:1832#0 1 1 76 54064 54139 [TCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGT] HWI-EAS406:5:38:235:1742#0 1 1 76 54065 54140 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:5:18:662:1105#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:6:3:1177:1854#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:7:9:992:765#0 1 1 76 54066 54141 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:43:854:1097#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:93:203:1181#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:7:30:1236:146#0 1 1 76 54067 54142 [CTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATG] HWI-EAS406:5:41:1430:856#0 1 1 76 54068 54143 [TGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGA] HWI-EAS406:6:8:901:1916#0 1 1 76 54069 54144 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:5:47:597:469#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:6:41:457:1990#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:54:1001:853#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:75:488:1983#0 1 1 76 54070 54145 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:1:872:1748#0 1 1 76 54071 54146 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:99:765:526#0 1 1 76 54071 54146 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:5:80:1244:1040#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:10:1560:773#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:37:846:1253#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:43:1695:1212#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:59:1265:423#0 1 1 76 54072 54147 [GTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATA] HWI-EAS406:5:74:851:1515#0 1 1 76 54073 54148 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:5:23:1249:1277#0 1 1 76 54074 54149 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:7:34:354:425#0 1 1 76 54074 54149 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:5:35:998:808#0 1 1 76 54075 54150 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:7:61:191:1269#0 1 1 76 54075 54150 [CTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTAC] HWI-EAS406:7:35:1265:691#0 1 1 76 54078 54153 [TGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACA] HWI-EAS406:6:67:942:1117#0 1 1 76 54079 54154 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:6:18:201:519#0 1 1 76 54082 54157 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:7:38:1036:1712#0 1 1 76 54082 54157 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:1:971:947#0 1 1 76 54083 54158 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:95:362:782#0 1 1 76 54083 54158 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:5:22:289:559#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:60:698:460#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:71:177:953#0 1 1 76 54084 54159 [TCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTG] HWI-EAS406:6:93:735:163#0 1 1 76 54086 54161 [CAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGT] HWI-EAS406:7:44:31:512#0 1 1 76 54087 54162 [AGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTG] HWI-EAS406:5:14:1556:1112#0 1 1 76 54088 54163 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:7:1377:1427#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:46:104:355#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:6:838:799#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:56:617:1957#0 1 1 76 54089 54164 [GAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTG] HWI-EAS406:5:61:214:1783#0 1 1 76 54091 54166 [AAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGC] HWI-EAS406:5:25:1168:1342#0 1 1 76 54092 54167 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:6:39:953:1361#0 1 1 76 54093 54168 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:7:31:1758:925#0 1 1 76 54093 54168 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:50:1234:1908#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:51:539:1145#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:7:42:988:259#0 1 1 76 54094 54169 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:5:94:1523:1523#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:6:962:858#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:28:1313:471#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:32:713:455#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:60:1645:1371#0 1 1 76 54095 54170 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:5:69:1336:939#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:6:18:1512:1768#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:7:76:96:774#0 1 1 76 54097 54172 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:6:57:1393:1335#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:36:530:50#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:48:1493:1687#0 1 1 76 54098 54173 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:5:6:1630:1633#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:6:65:1117:1477#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:7:48:398:614#0 1 1 76 54099 54174 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:5:959:788#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:49:1299:1294#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:65:760:767#0 1 1 76 54100 54175 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:5:42:1274:983#0 1 1 76 54101 54176 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:7:16:1408:327#0 1 1 76 54101 54176 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:49:1260:1907#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:71:762:262#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:67:1718:913#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:100:1551:1706#0 1 1 76 54102 54177 [GGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGT] HWI-EAS406:7:39:537:2011#0 1 1 76 54103 54178 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:5:70:1264:579#0 1 1 76 54104 54179 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:6:18:742:1162#0 1 1 76 54104 54179 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:5:38:610:654#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:6:5:1427:983#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:6:247:694#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:39:309:1243#0 1 1 76 54105 54180 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:5:36:1023:788#0 1 1 76 54106 54181 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:6:36:722:1541#0 1 1 76 54106 54181 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:54:1390:1329#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:84:296:1881#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:6:49:1063:1067#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:38:235:939#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:815#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:813#0 1 1 76 54107 54182 [TCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGA] HWI-EAS406:7:66:668:514#0 1 1 76 54108 54183 [CTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAG] HWI-EAS406:6:1:1168:1872#0 1 1 76 54109 54184 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:53:1102:724#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:96:530:2016#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:66:42:446#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:73:1393:935#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:90:175:1657#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:7:49:1176:1859#0 1 1 76 54110 54185 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:7:1605:1811#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:25:678:836#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:26:1605:573#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:32:1175:618#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:40:482:270#0 1 1 76 54111 54186 [AGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCT] HWI-EAS406:6:59:668:1088#0 1 1 76 54112 54187 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:5:89:237:262#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:6:82:981:753#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:7:95:125:1460#0 1 1 76 54113 54188 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:35:1057:851#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:94:541:1656#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:6:33:1425:321#0 1 1 76 54116 54191 [ACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGA] HWI-EAS406:6:10:1351:765#0 1 1 76 54117 54192 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:5:5:1510:1678#0 1 1 76 54119 54194 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:7:85:551:1050#0 1 1 76 54119 54194 [CTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATT] HWI-EAS406:7:44:439:848#0 1 1 76 54123 54198 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:37:674:1509#0 1 1 76 54124 54199 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:100:798:1572#0 1 1 76 54124 54199 [GTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGA] HWI-EAS406:7:56:798:1877#0 1 1 76 54125 54200 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:32:285:1614#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:33:1199:395#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:6:9:1257:567#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:7:78:402:1695#0 1 1 76 54126 54201 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:5:73:501:691#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:42:1262:1782#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:62:1716:1116#0 1 1 76 54127 54202 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:47:319:1607#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:79:1415:718#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:7:17:1742:361#0 1 1 76 54128 54203 [AGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCT] HWI-EAS406:5:65:1683:1785#0 1 1 76 54129 54204 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:22:469:211#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:47:1051:822#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:89:645:1253#0 1 1 76 54131 54206 [TTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGG] HWI-EAS406:7:53:1035:1424#0 1 1 76 54132 54207 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:27:1133:755#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:94:227:1579#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:6:42:753:402#0 1 1 76 54134 54209 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:34:1248:1931#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:44:495:2018#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:72:1132:1576#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:7:64:220:1228#0 1 1 76 54135 54210 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:6:8:1387:1563#0 1 1 76 54136 54211 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:7:86:1191:1778#0 1 1 76 54136 54211 [AGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGC] HWI-EAS406:7:78:1540:1877#0 1 1 76 54137 54212 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:5:37:178:213#0 1 1 76 54139 54214 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:6:45:363:213#0 1 1 76 54139 54214 [TATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCAT] HWI-EAS406:5:3:156:1647#0 1 1 76 54140 54215 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:62:779:1177#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:72:936:54#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:79:541:1148#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:6:6:1460:1107#0 1 1 76 54141 54216 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:5:35:29:1868#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:89:1573:1987#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:92:1202:380#0 1 1 76 54142 54217 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:5:66:1651:1834#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:6:1:818:861#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:7:23:1150:620#0 1 1 76 54143 54218 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:9:600:1790#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:40:845:408#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:7:61:441:677#0 1 1 76 54144 54219 [GATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTA] HWI-EAS406:7:25:1391:905#0 1 1 76 54145 54220 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:29:1417:999#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:77:1148:453#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:28:317:1489#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:34:58:451#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:65:1663:1191#0 1 1 76 54146 54221 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:5:52:1161:616#0 1 1 76 54147 54222 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:7:28:336:1807#0 1 1 76 54147 54222 [ACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCT] HWI-EAS406:6:85:243:843#0 1 1 76 54148 54223 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:6:41:295:981#0 1 1 76 54149 54224 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:7:66:140:852#0 1 1 76 54149 54224 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:5:79:393:543#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:18:1350:1820#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:32:1319:1017#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:46:923:1720#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:99:1138:1186#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:17:1267:1397#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:86:387:2021#0 1 1 76 54150 54225 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:16:1065:1213#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:19:675:634#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:46:1591:2004#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:99:1426:1408#0 1 1 76 54151 54226 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:12:881:861#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:929:724#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:1746:503#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:6:71:872:401#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:7:53:948:1175#0 1 1 76 54152 54227 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:56:246:799#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:58:242:1499#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:71:855:1885#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:84:220:1674#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:7:48:1599:1908#0 1 1 76 54154 54229 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:5:21:1642:1137#0 1 1 76 54155 54230 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:6:6:1147:732#0 1 1 76 54155 54230 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:5:66:1128:1376#0 1 1 76 54156 54231 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:6:55:656:391#0 1 1 76 54156 54231 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:20:1104:1681#0 1 1 76 54157 54232 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:84:997:392#0 1 1 76 54157 54232 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:67:700:788#0 1 1 76 54158 54233 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:89:1120:429#0 1 1 76 54158 54233 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:36:1143:227#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:80:711:956#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:36:1396:1577#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:88:584:1502#0 1 1 76 54159 54234 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:11:1516:1033#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:87:1474:820#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:7:31:573:281#0 1 1 76 54161 54236 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:6:26:1456:433#0 1 1 76 54162 54237 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:7:58:1242:1021#0 1 1 76 54162 54237 [GGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATT] HWI-EAS406:6:26:1525:983#0 1 1 76 54163 54238 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:21:1447:171#0 1 1 76 54164 54239 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:53:579:1024#0 1 1 76 54164 54239 [TGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGT] HWI-EAS406:7:30:587:260#0 1 1 76 54165 54240 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:22:1574:1334#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:79:793:103#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:3:757:524#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:37:1589:439#0 1 1 76 54167 54242 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:5:74:1683:444#0 1 1 76 54168 54243 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:7:65:530:1740#0 1 1 76 54168 54243 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:60:700:816#0 1 1 76 54169 54244 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:94:880:1637#0 1 1 76 54169 54244 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:5:40:1586:1236#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1383:228#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1384:231#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:7:27:357:718#0 1 1 76 54171 54246 [ATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGA] HWI-EAS406:5:40:1646:202#0 1 1 76 54173 54248 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:5:56:1143:581#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:31:1016:1570#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:46:593:1405#0 1 1 76 54175 54250 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:24:814:315#0 1 1 76 54176 54251 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:82:967:1960#0 1 1 76 54176 54251 [GAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGG] HWI-EAS406:5:10:1130:1883#0 1 1 76 54179 54254 [GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGC] HWI-EAS406:7:68:216:273#0 1 1 76 54181 54256 [AGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCAC] HWI-EAS406:5:70:157:381#0 1 1 76 54183 54258 [GCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGA] HWI-EAS406:6:3:1482:934#0 1 1 76 54185 54260 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:6:38:723:1684#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:6:122:307#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:47:563:1669#0 1 1 76 54186 54261 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:5:37:398:1887#0 1 1 76 54188 54263 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:6:39:44:975#0 1 1 76 54188 54263 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:5:57:1763:1732#0 1 1 76 54191 54266 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:6:57:337:21#0 1 1 76 54191 54266 [CCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCC] HWI-EAS406:5:72:1722:76#0 1 1 76 54194 54269 [CATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCA] HWI-EAS406:7:75:1542:775#0 1 1 76 54195 54270 [ATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCAT] HWI-EAS406:6:36:950:1807#0 1 1 76 54196 54271 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:55:252:1552#0 1 1 76 54198 54273 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:90:687:1011#0 1 1 76 54198 54273 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:5:22:933:1376#0 1 1 76 54199 54274 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:7:55:464:1339#0 1 1 76 54199 54274 [TTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGG] HWI-EAS406:5:7:1026:1071#0 1 1 76 54201 54276 [TCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGT] HWI-EAS406:5:95:1707:1819#0 1 1 76 54202 54277 [CTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTA] HWI-EAS406:6:7:272:1017#0 1 1 76 54203 54278 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:45:1766:1276#0 1 1 76 54204 54279 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:85:635:917#0 1 1 76 54204 54279 [AGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAA] HWI-EAS406:5:7:770:317#0 1 1 76 54205 54280 [GGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAG] HWI-EAS406:5:69:1660:1657#0 1 1 76 54206 54281 [GAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGA] HWI-EAS406:7:45:1239:1592#0 1 1 76 54207 54282 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:6:76:718:580#0 1 1 76 54210 54285 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:7:60:1450:766#0 1 1 76 54210 54285 [CCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACA] HWI-EAS406:6:38:1154:1262#0 1 1 76 54212 54287 [TCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCT] HWI-EAS406:6:74:673:1824#0 1 1 76 54216 54291 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:5:63:1141:1104#0 1 1 76 54218 54293 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:7:34:280:1626#0 1 1 76 54218 54293 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:5:74:1362:1863#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:6:15:131:937#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:7:2:622:1398#0 1 1 76 54219 54294 [AGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCAC] HWI-EAS406:6:56:333:1558#0 1 1 76 54220 54295 [GCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACT] HWI-EAS406:6:47:1572:1059#0 1 1 76 54221 54296 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:6:57:985:1452#0 1 1 76 54222 54297 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:7:17:1673:794#0 1 1 76 54222 54297 [GGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCA] HWI-EAS406:7:46:726:746#0 1 1 76 54230 54305 [GCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGG] HWI-EAS406:7:52:668:1877#0 1 1 76 54233 54308 [CTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGG] HWI-EAS406:5:68:960:328#0 1 1 76 54234 54309 [TTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAA] HWI-EAS406:5:30:1622:795#0 1 1 76 54237 54312 [TGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAA] HWI-EAS406:6:66:1712:1855#0 1 1 76 54238 54313 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:5:13:1200:595#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:10:747:660#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:97:806:1606#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:7:89:714:1430#0 1 1 76 54239 54314 [TTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAAT] HWI-EAS406:5:7:1135:1327#0 1 1 76 54240 54315 [AATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGA] HWI-EAS406:7:48:1681:1982#0 1 1 76 54242 54317 [AAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAAC] HWI-EAS406:7:37:1176:1255#0 1 1 76 54248 54323 [AGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACC] HWI-EAS406:7:13:1087:1854#0 1 1 76 54249 54324 [CACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTG] HWI-EAS406:7:70:359:1133#0 1 1 76 54256 54331 [ATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCG] HWI-EAS406:5:29:584:531#0 1 1 76 54260 54335 [TGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGG] HWI-EAS406:6:61:844:753#0 1 1 76 54262 54337 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:6:65:1481:1596#0 1 1 76 54263 54338 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:7:37:704:174#0 1 1 76 54263 54338 [ATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCA] HWI-EAS406:5:51:759:1539#0 1 1 76 54264 54339 [CATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCT] HWI-EAS406:5:20:1604:653#0 1 1 76 54269 54344 [TAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATT] HWI-EAS406:5:4:241:642#0 1 1 76 54277 54352 [AGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAA] HWI-EAS406:5:61:1463:1990#0 1 1 76 54280 54355 [GAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAG] HWI-EAS406:7:45:1358:89#0 1 1 76 54283 54358 [CATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATG] HWI-EAS406:6:28:262:1382#0 1 1 76 54286 54361 [ATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGG] HWI-EAS406:5:55:286:1719#0 1 1 76 54287 54362 [CCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGC] HWI-EAS406:6:16:1456:1430#0 1 1 76 54289 54364 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:5:10:1100:437#0 1 1 76 54292 54367 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:6:17:1373:1181#0 1 1 76 54292 54367 [ACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCC] HWI-EAS406:7:81:1055:997#0 1 1 76 54294 54369 [TTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTG] HWI-EAS406:6:43:297:1857#0 1 1 76 54296 54371 [GACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTG] HWI-EAS406:6:62:846:1980#0 1 1 76 54299 54374 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:30:1260:1613#0 1 1 76 54305 54380 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:97:536:1849#0 1 1 76 54305 54380 [AGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCA] HWI-EAS406:7:46:769:555#0 1 1 76 54306 54381 [GGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCAC] HWI-EAS406:7:47:449:1921#0 1 1 76 54307 54382 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:5:36:1008:1949#0 1 1 76 54310 54385 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:6:72:1417:797#0 1 1 76 54310 54385 [AGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGT] HWI-EAS406:5:48:777:1649#0 1 1 76 54317 54392 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:5:78:1126:1855#0 1 1 76 54321 54396 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:6:75:1658:432#0 1 1 76 54321 54396 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:6:90:1610:226#0 1 1 76 54323 54398 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:7:42:1194:1800#0 1 1 76 54323 54398 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:5:38:460:1961#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:6:2:1374:1550#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:7:36:699:705#0 1 1 76 54324 54399 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:6:82:30:684#0 1 1 76 54325 54400 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:7:16:1727:982#0 1 1 76 54325 54400 [ACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTG] HWI-EAS406:7:46:890:1228#0 1 1 76 54326 54401 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:6:28:1135:1646#0 1 1 76 54327 54402 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:7:56:206:264#0 1 1 76 54327 54402 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:5:91:349:1599#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:62:1521:1923#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:77:1438:1455#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:7:41:1061:217#0 1 1 76 54329 54404 [TGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGA] HWI-EAS406:7:62:904:312#0 1 1 76 54330 54405 [GTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGAC] HWI-EAS406:7:68:559:760#0 1 1 76 54331 54406 [CGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGAC] HWI-EAS406:6:23:1308:1435#0 1 1 76 54334 54409 [GGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGA] HWI-EAS406:5:9:436:1783#0 1 1 76 54336 54411 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:6:70:388:1231#0 1 1 76 54339 54414 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:7:37:360:1575#0 1 1 76 54339 54414 [AGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAG] HWI-EAS406:6:41:1079:775#0 1 1 76 54340 54415 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:6:49:1430:1667#0 1 1 76 54345 54420 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:7:22:1583:762#0 1 1 76 54345 54420 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:38:520:1866#0 1 1 76 54346 54421 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:68:1648:592#0 1 1 76 54346 54421 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:6:62:462:1119#0 1 1 76 54347 54422 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:7:43:701:1133#0 1 1 76 54347 54422 [CATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCT] HWI-EAS406:6:20:1777:1193#0 1 1 76 54349 54424 [TTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCC] HWI-EAS406:7:77:1354:1160#0 1 1 76 54351 54426 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:13:1277:628#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:38:619:664#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:53:322:777#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:92:1767:1364#0 1 1 76 54352 54427 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:14:1063:1857#0 1 1 76 54354 54429 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:64:1260:939#0 1 1 76 54354 54429 [AGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCT] HWI-EAS406:7:36:764:2012#0 1 1 76 54355 54430 [AGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTAC] HWI-EAS406:7:34:393:1997#0 1 1 76 54357 54432 [GGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCAT] HWI-EAS406:6:94:1174:764#0 1 1 76 54361 54436 [TGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTA] HWI-EAS406:6:79:1020:780#0 1 1 76 54376 54451 [CGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTT] HWI-EAS406:6:68:1372:846#0 1 1 76 54406 54481 [GAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTTCATT] HWI-EAS406:6:81:1255:688#0 1 1 76 54410 54485 [TACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGA] HWI-EAS406:7:48:1267:1925#0 1 1 76 54460 54535 [CTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGAGA] HWI-EAS406:6:38:817:259#0 1 1 76 54462 54537 [TTCGGTATCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCAT] HWI-EAS406:7:50:111:1321#0 1 1 76 54505 54580 [TCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCT] HWI-EAS406:7:66:316:1516#0 1 1 76 54512 54587 [CTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTG] HWI-EAS406:6:61:1550:424#0 1 1 76 54515 54590 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:5:67:707:682#0 1 1 76 54520 54595 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:6:41:997:1467#0 1 1 76 54520 54595 [ACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTG] HWI-EAS406:7:1:1038:1756#0 1 1 76 54521 54596 [CTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGT] HWI-EAS406:6:35:1389:139#0 1 1 76 54522 54597 [GACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC] HWI-EAS406:7:64:794:1071#0 1 1 76 54525 54600 [CACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGA] HWI-EAS406:6:48:1546:480#0 1 1 76 54530 54605 [ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAG] HWI-EAS406:5:4:440:970#0 1 1 76 54531 54606 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:6:47:966:1183#0 1 1 76 54533 54608 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:7:53:1319:1765#0 1 1 76 54533 54608 [ACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGC] HWI-EAS406:5:14:980:877#0 1 1 76 54537 54612 [TAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCA] HWI-EAS406:6:60:393:902#0 1 1 76 54543 54618 [ACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATA] HWI-EAS406:5:47:861:1612#0 1 1 76 54545 54620 [CAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCT] HWI-EAS406:6:41:1702:1042#0 1 1 76 54548 54623 [TTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTT] HWI-EAS406:6:36:1192:465#0 1 1 76 54552 54627 [TGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGC] HWI-EAS406:7:45:1771:132#0 1 1 76 54554 54629 [GGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATA] HWI-EAS406:6:55:141:877#0 1 1 76 54561 54636 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:6:41:492:1359#0 1 1 76 54566 54641 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:7:48:1004:1533#0 1 1 76 54566 54641 [AAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAA] HWI-EAS406:6:80:857:2034#0 1 1 76 54567 54642 [TTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAA] HWI-EAS406:7:45:1019:801#0 1 1 76 54573 54648 [TATAAAAAAAAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATT] HWI-EAS406:6:67:1105:1297#0 1 1 76 54635 54710 [AAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCAT] HWI-EAS406:6:72:1189:117#0 1 1 76 54644 54719 [AATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGG] HWI-EAS406:6:55:1581:995#0 1 1 76 54648 54723 [TCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAG] HWI-EAS406:5:35:444:949#0 1 1 76 54650 54725 [CAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGC] HWI-EAS406:6:11:10:647#0 1 1 76 54651 54726 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:6:33:396:1612#0 1 1 76 54654 54729 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:7:44:1288:1818#0 1 1 76 54654 54729 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:57:1445:88#0 1 1 76 54657 54732 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:58:390:1937#0 1 1 76 54657 54732 [TTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATT] HWI-EAS406:5:48:129:1825#0 1 1 76 54658 54733 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:39:1252:1264#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:54:537:1509#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:55:1562:1923#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:56:421:1318#0 1 1 76 54659 54734 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:5:38:1272:690#0 1 1 76 54660 54735 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:6:56:983:1532#0 1 1 76 54660 54735 [TTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAA] HWI-EAS406:5:34:904:776#0 1 1 76 54663 54738 [CATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTT] HWI-EAS406:6:58:1366:282#0 1 1 76 54669 54744 [GCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAA] HWI-EAS406:7:41:752:1291#0 1 1 76 54674 54749 [TTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAA] HWI-EAS406:5:56:960:1374#0 1 1 76 54677 54752 [TTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAAC] HWI-EAS406:5:53:1300:974#0 1 1 76 54678 54753 [AGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTA] HWI-EAS406:6:55:367:1351#0 1 1 76 54682 54757 [GGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTAC] HWI-EAS406:5:36:1085:1378#0 1 1 76 54683 54758 [TCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCA] HWI-EAS406:5:59:801:590#0 1 1 76 54689 54764 [AGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTT] HWI-EAS406:6:55:449:1480#0 1 1 76 54692 54767 [GCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGAC] HWI-EAS406:7:99:1141:692#0 1 1 76 54695 54770 [GCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCA] HWI-EAS406:7:99:1266:107#0 1 1 76 54706 54781 [TTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCT] HWI-EAS406:6:52:219:1214#0 1 1 76 54709 54784 [TGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAA] HWI-EAS406:7:59:687:763#0 1 1 76 54715 54790 [GCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAA] HWI-EAS406:6:68:1355:1044#0 1 1 76 54716 54791 [GATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTT] HWI-EAS406:7:61:1525:1492#0 1 1 76 54730 54805 [TGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTG] HWI-EAS406:7:67:1666:1088#0 1 1 76 54739 54814 [GCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGA] HWI-EAS406:6:62:125:463#0 1 1 76 54740 54815 [TAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTC] HWI-EAS406:7:68:455:849#0 1 1 76 54746 54821 [CTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAA] HWI-EAS406:7:35:236:401#0 1 1 76 54755 54830 [TACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAAC] HWI-EAS406:5:5:1165:1267#0 1 1 76 54756 54831 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:73:1129:1305#0 1 1 76 54760 54835 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:77:78:460#0 1 1 76 54760 54835 [GCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTG] HWI-EAS406:6:13:1406:1469#0 1 1 76 54762 54837 [ACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGAT] HWI-EAS406:6:73:543:282#0 1 1 76 54764 54839 [TGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGC] HWI-EAS406:6:41:1338:1133#0 1 1 76 54767 54842 [GACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCT] HWI-EAS406:7:51:911:1053#0 1 1 76 54768 54843 [ACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTG] HWI-EAS406:6:50:547:1645#0 1 1 76 54769 54844 [TTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTC] HWI-EAS406:7:59:1428:643#0 1 1 76 54775 54850 [TTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCA] HWI-EAS406:5:40:180:1943#0 1 1 76 54776 54851 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:51:744:401#0 1 1 76 54777 54852 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:55:619:899#0 1 1 76 54777 54852 [TGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGT] HWI-EAS406:7:37:1026:1049#0 1 1 76 54778 54853 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:43:715:1593#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:58:722:612#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:6:60:710:286#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:7:34:199:796#0 1 1 76 54783 54858 [TCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGA] HWI-EAS406:5:55:1311:280#0 1 1 76 54784 54859 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:49:1088:1272#0 1 1 76 54788 54863 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:61:216:737#0 1 1 76 54788 54863 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:5:48:640:385#0 1 1 76 54791 54866 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:6:33:476:1558#0 1 1 76 54791 54866 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:54:1410:1105#0 1 1 76 54795 54870 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:76:835:1212#0 1 1 76 54795 54870 [GTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACC] HWI-EAS406:6:32:1548:1312#0 1 1 76 54798 54873 [ATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTT] HWI-EAS406:5:2:991:955#0 1 1 76 54800 54875 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:20:116:1761#0 1 1 76 54801 54876 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:33:875:147#0 1 1 76 54801 54876 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:5:70:698:1812#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:6:51:1031:1841#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:41:946:1778#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:58:1532:1630#0 1 1 76 54802 54877 [TTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTT] HWI-EAS406:7:73:1264:585#0 1 1 76 54804 54879 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:6:52:1044:1885#0 1 1 76 54805 54880 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:7:55:1426:887#0 1 1 76 54805 54880 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:5:46:1126:1531#0 1 1 76 54806 54881 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:7:58:493:1365#0 1 1 76 54806 54881 [GAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAA] HWI-EAS406:7:48:1521:589#0 1 1 76 54807 54882 [CCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTG] HWI-EAS406:6:68:305:556#0 1 1 76 54810 54885 [CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGA] HWI-EAS406:6:43:229:1765#0 1 1 76 54811 54886 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:5:42:1688:1220#0 1 1 76 54812 54887 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:7:40:1030:1731#0 1 1 76 54812 54887 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:42:1673:1475#0 1 1 76 54814 54889 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:70:544:1367#0 1 1 76 54814 54889 [AAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAA] HWI-EAS406:7:61:638:1444#0 1 1 76 54816 54891 [AACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAAC] HWI-EAS406:5:50:1059:1293#0 1 1 76 54817 54892 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:33:426:1747#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:58:1637:922#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:63:658:1278#0 1 1 76 54819 54894 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:5:2:610:578#0 1 1 76 54820 54895 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:7:84:157:423#0 1 1 76 54820 54895 [TTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAAT] HWI-EAS406:6:54:209:1630#0 1 1 76 54822 54897 [TCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATG] HWI-EAS406:7:97:963:1565#0 1 1 76 54823 54898 [CCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGC] HWI-EAS406:7:58:798:1339#0 1 1 76 54824 54899 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:6:3:699:1269#0 1 1 76 54828 54903 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:7:45:1362:1785#0 1 1 76 54828 54903 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1019:766#0 1 1 76 54830 54905 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1589:741#0 1 1 76 54830 54905 [CTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGC] HWI-EAS406:6:42:710:1954#0 1 1 76 54831 54906 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:5:54:381:672#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:39:1669:961#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:60:398:1744#0 1 1 76 54832 54907 [TGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTC] HWI-EAS406:5:49:600:1346#0 1 1 76 54833 54908 [GTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCA] HWI-EAS406:5:35:1496:850#0 1 1 76 54834 54909 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:38:1776:564#0 1 1 76 54835 54910 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:62:513:1672#0 1 1 76 54835 54910 [ATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGT] HWI-EAS406:5:60:635:1717#0 1 1 76 54838 54913 [TTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTC] HWI-EAS406:7:62:535:1449#0 1 1 76 54839 54914 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:5:70:739:325#0 1 1 76 54841 54916 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:6:99:1290:751#0 1 1 76 54841 54916 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:5:67:1236:1544#0 1 1 76 54842 54917 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:7:46:1007:418#0 1 1 76 54842 54917 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:5:35:654:1034#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:6:42:1426:1731#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:7:45:1558:1421#0 1 1 76 54843 54918 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:5:59:1538:1310#0 1 1 76 54846 54921 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:7:38:1321:484#0 1 1 76 54846 54921 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:49:1639:559#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:54:1083:293#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:7:41:621:251#0 1 1 76 54847 54922 [CTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTA] HWI-EAS406:5:53:908:1065#0 1 1 76 54848 54923 [TCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTAC] HWI-EAS406:6:52:118:1211#0 1 1 76 54849 54924 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:46:1037:1066#0 1 1 76 54850 54925 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:50:1764:1024#0 1 1 76 54850 54925 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:5:68:808:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:6:44:1702:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:7:39:995:202#0 1 1 76 54852 54927 [TCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAG] HWI-EAS406:7:73:846:1330#0 1 1 76 54853 54928 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:48:916:907#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:53:1292:1430#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:62:427:1685#0 1 1 76 54854 54929 [TTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTC] HWI-EAS406:7:56:426:1445#0 1 1 76 54855 54930 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:5:6:249:575#0 1 1 76 54856 54931 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:6:56:321:1712#0 1 1 76 54856 54931 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:35:1110:1447#0 1 1 76 54857 54932 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:61:618:1165#0 1 1 76 54857 54932 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:54:67:926#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:61:782:1656#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:6:36:1678:1148#0 1 1 76 54858 54933 [AGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGC] HWI-EAS406:6:23:681:145#0 1 1 76 54860 54935 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:5:53:996:669#0 1 1 76 54861 54936 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:6:48:704:823#0 1 1 76 54861 54936 [CCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTA] HWI-EAS406:6:52:340:757#0 1 1 76 54862 54937 [CAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTAT] HWI-EAS406:7:45:1323:2026#0 1 1 76 54863 54938 [AACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATA] HWI-EAS406:5:48:1248:1119#0 1 1 76 54864 54939 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:5:62:1622:1873#0 1 1 76 54865 54940 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:6:53:781:914#0 1 1 76 54865 54940 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:48:899:831#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1880#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1878#0 1 1 76 54867 54942 [ACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACA] HWI-EAS406:7:55:1111:1721#0 1 1 76 54868 54943 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:56:720:921#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:58:723:506#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:61:919:391#0 1 1 76 54870 54945 [CCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTG] HWI-EAS406:7:45:1333:485#0 1 1 76 54872 54947 [TTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAG] HWI-EAS406:7:47:1544:994#0 1 1 76 54874 54949 [ATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTT] HWI-EAS406:7:56:917:951#0 1 1 76 54876 54951 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:55:825:800#0 1 1 76 54877 54952 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:79:1069:1840#0 1 1 76 54877 54952 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:7:1637:1135#0 1 1 76 54879 54954 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:59:560:1386#0 1 1 76 54879 54954 [AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCAC] HWI-EAS406:5:47:1016:800#0 1 1 76 54881 54956 [ACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACA] HWI-EAS406:6:63:194:819#0 1 1 76 54882 54957 [GAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCT] HWI-EAS406:7:68:201:723#0 1 1 76 54885 54960 [AACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTT] HWI-EAS406:5:53:654:1096#0 1 1 76 54886 54961 [CTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATAC] HWI-EAS406:7:48:1114:1725#0 1 1 76 54892 54967 [TAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCA] HWI-EAS406:5:51:821:485#0 1 1 76 54894 54969 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:6:52:643:1405#0 1 1 76 54898 54973 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:7:53:919:1910#0 1 1 76 54898 54973 [CTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTT] HWI-EAS406:5:62:1517:1950#0 1 1 76 54899 54974 [TCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTT] HWI-EAS406:7:73:1005:1586#0 1 1 76 54901 54976 [CTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGAC] HWI-EAS406:5:43:445:1826#0 1 1 76 54906 54981 [AGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACT] HWI-EAS406:7:48:378:827#0 1 1 76 54927 55002 [GCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAA] HWI-EAS406:7:62:475:1726#0 1 1 76 54934 55009 [CCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGAT] HWI-EAS406:6:44:1278:1465#0 1 1 76 54967 55042 [CTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTG] HWI-EAS406:5:53:476:1464#0 1 1 76 54972 55047 [TTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAG] HWI-EAS406:7:57:1087:444#0 1 1 76 54974 55049 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:5:48:1286:1898#0 1 1 76 54985 55060 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:7:57:598:842#0 1 1 76 54985 55060 [AGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTAC] HWI-EAS406:7:47:1400:1764#0 1 1 76 54995 55070 [TTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAG] HWI-EAS406:5:48:1077:629#0 1 1 76 55014 55089 [CTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGG] HWI-EAS406:5:25:1199:349#0 1 1 76 55020 55095 [TTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGA] HWI-EAS406:5:59:447:1541#0 1 1 76 55022 55097 [TTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGAACGACAAT] HWI-EAS406:7:40:178:165#0 1 1 76 55030 55105 [CTCTATTGTCTAGCTATAGGTGGGGGTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGAC] HWI-EAS406:6:46:1242:756#0 1 1 76 55136 55211 [GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTT] HWI-EAS406:5:96:257:741#0 1 1 76 55161 55236 [GGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTG] HWI-EAS406:6:54:667:1882#0 1 1 76 55198 55273 [TTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCA] HWI-EAS406:5:54:89:1691#0 1 1 76 55215 55290 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5407-5482] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/55348-57402] There are [267] sequences in this contig [GAAAAAGGGGGCTAGCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAA] HWI-EAS406:5:71:963:1069#0 1 1 76 55357 55432 [TGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAG] HWI-EAS406:5:90:718:827#0 1 1 76 55395 55470 [GTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGA] HWI-EAS406:6:50:1068:1124#0 1 1 76 55396 55471 [TTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGAT] HWI-EAS406:7:46:487:1859#0 1 1 76 55397 55472 [GTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGA] HWI-EAS406:7:93:476:1080#0 1 1 76 55421 55496 [AGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAAT] HWI-EAS406:5:75:1472:1372#0 1 1 76 55423 55498 [TTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATT] HWI-EAS406:5:23:784:918#0 1 1 76 55427 55502 [TCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTG] HWI-EAS406:7:54:921:569#0 1 1 76 55428 55503 [AGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTA] HWI-EAS406:5:62:285:936#0 1 1 76 55432 55507 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:5:57:761:2009#0 1 1 76 55439 55514 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:6:36:654:544#0 1 1 76 55439 55514 [TAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTT] HWI-EAS406:5:47:1330:1958#0 1 1 76 55443 55518 [GTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGA] HWI-EAS406:7:46:1751:277#0 1 1 76 55447 55522 [TTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAG] HWI-EAS406:5:48:1050:431#0 1 1 76 55451 55526 [AGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGG] HWI-EAS406:5:56:1503:1888#0 1 1 76 55453 55528 [GGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGT] HWI-EAS406:5:63:235:1522#0 1 1 76 55454 55529 [ATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAG] HWI-EAS406:7:57:718:866#0 1 1 76 55456 55531 [CTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAA] HWI-EAS406:5:63:881:1689#0 1 1 76 55458 55533 [GGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATG] HWI-EAS406:5:56:1714:198#0 1 1 76 55463 55538 [GTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGG] HWI-EAS406:6:50:1063:640#0 1 1 76 55464 55539 [AGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATT] HWI-EAS406:7:91:607:301#0 1 1 76 55469 55544 [TGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAG] HWI-EAS406:5:46:26:1147#0 1 1 76 55472 55547 [GTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTG] HWI-EAS406:7:45:628:1522#0 1 1 76 55477 55552 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:6:87:1690:975#0 1 1 76 55480 55555 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:7:56:137:573#0 1 1 76 55480 55555 [GGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATG] HWI-EAS406:7:68:1555:1689#0 1 1 76 55481 55556 [GTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGC] HWI-EAS406:5:58:682:1738#0 1 1 76 55482 55557 [GACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGA] HWI-EAS406:6:31:1175:1548#0 1 1 76 55486 55561 [CATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGT] HWI-EAS406:5:41:613:1556#0 1 1 76 55488 55563 [AATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCT] HWI-EAS406:7:35:208:92#0 1 1 76 55496 55571 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:6:59:1065:1018#0 1 1 76 55499 55574 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:7:62:287:374#0 1 1 76 55499 55574 [TTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATAT] HWI-EAS406:5:60:1126:457#0 1 1 76 55509 55584 [TGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATT] HWI-EAS406:5:52:1074:921#0 1 1 76 55510 55585 [GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTA] HWI-EAS406:6:59:782:205#0 1 1 76 55511 55586 [ATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATG] HWI-EAS406:6:66:1100:1007#0 1 1 76 55513 55588 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:5:76:618:12#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:6:53:136:1281#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:7:54:741:1995#0 1 1 76 55515 55590 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:5:49:1651:561#0 1 1 76 55517 55592 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:7:42:801:728#0 1 1 76 55517 55592 [AACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTT] HWI-EAS406:6:58:52:1428#0 1 1 76 55532 55607 [TGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTT] HWI-EAS406:5:51:1107:1138#0 1 1 76 55537 55612 [GGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTG] HWI-EAS406:6:51:1655:1268#0 1 1 76 55538 55613 [AGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAA] HWI-EAS406:7:52:109:1569#0 1 1 76 55546 55621 [GCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAAC] HWI-EAS406:6:51:638:1649#0 1 1 76 55547 55622 [TGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACC] HWI-EAS406:6:54:1524:978#0 1 1 76 55551 55626 [CCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTT] HWI-EAS406:6:57:1473:655#0 1 1 76 55569 55644 [AGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCT] HWI-EAS406:5:49:831:1474#0 1 1 76 55577 55652 [TATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAAT] HWI-EAS406:5:51:1389:835#0 1 1 76 55582 55657 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:5:46:340:348#0 1 1 76 55587 55662 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:7:56:1390:1023#0 1 1 76 55587 55662 [CAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAAT] HWI-EAS406:6:51:162:1427#0 1 1 76 55591 55666 [TGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAA] HWI-EAS406:6:56:1638:945#0 1 1 76 55594 55669 [GCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTC] HWI-EAS406:5:48:1495:1062#0 1 1 76 55601 55676 [CTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTT] HWI-EAS406:6:46:718:1420#0 1 1 76 55605 55680 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:491:137#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:874:1585#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:49:1696:321#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:82:1616:1924#0 1 1 76 55606 55681 [GAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACC] HWI-EAS406:5:7:563:689#0 1 1 76 55613 55688 [AAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGA] HWI-EAS406:7:55:573:1885#0 1 1 76 55619 55694 [AACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGAC] HWI-EAS406:7:56:1249:1152#0 1 1 76 55620 55695 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:42:25:1251#0 1 1 76 55623 55698 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:52:505:1902#0 1 1 76 55623 55698 [TTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACC] HWI-EAS406:7:52:999:403#0 1 1 76 55627 55702 [ATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCA] HWI-EAS406:7:46:1627:1353#0 1 1 76 55636 55711 [TATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCAT] HWI-EAS406:5:45:1490:1390#0 1 1 76 55637 55712 [TGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTT] HWI-EAS406:5:50:662:1986#0 1 1 76 55639 55714 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:42:1301:800#0 1 1 76 55643 55718 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:46:1577:1890#0 1 1 76 55643 55718 [CTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTC] HWI-EAS406:7:51:669:996#0 1 1 76 55649 55724 [TTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACC] HWI-EAS406:6:41:993:1893#0 1 1 76 55652 55727 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:40:957:1998#0 1 1 76 55653 55728 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:54:1081:289#0 1 1 76 55653 55728 [TCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATG] HWI-EAS406:6:43:1323:680#0 1 1 76 55657 55732 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:13:1242:1637#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:59:719:373#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:7:61:535:209#0 1 1 76 55660 55735 [GAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGT] HWI-EAS406:5:29:789:396#0 1 1 76 55663 55738 [AAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTT] HWI-EAS406:5:57:1125:1370#0 1 1 76 55667 55742 [AAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTA] HWI-EAS406:5:52:46:1447#0 1 1 76 55668 55743 [AGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAAT] HWI-EAS406:6:47:1369:425#0 1 1 76 55670 55745 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:57:74:1491#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:64:106:1410#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:7:50:633:1788#0 1 1 76 55674 55749 [CTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGA] HWI-EAS406:7:61:1532:1262#0 1 1 76 55678 55753 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:40:151:1251#0 1 1 76 55681 55756 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:54:251:1597#0 1 1 76 55681 55756 [CAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTG] HWI-EAS406:6:55:94:1866#0 1 1 76 55684 55759 [AAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGA] HWI-EAS406:6:28:85:1002#0 1 1 76 55689 55764 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:34:431:1336#0 1 1 76 55693 55768 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:55:1108:653#0 1 1 76 55693 55768 [TTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGA] HWI-EAS406:6:51:1014:1766#0 1 1 76 55713 55788 [GCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGG] HWI-EAS406:7:4:629:1835#0 1 1 76 55878 55953 [CCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTT] HWI-EAS406:5:73:1450:1470#0 1 1 76 55882 55957 [TATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTAT] HWI-EAS406:7:84:817:413#0 1 1 76 55902 55977 [TTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGG] HWI-EAS406:7:27:1672:525#0 1 1 76 55947 56022 [TTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTT] HWI-EAS406:5:90:624:1900#0 1 1 76 55989 56064 [ATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGT] HWI-EAS406:6:25:1007:1215#0 1 1 76 55996 56071 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:61:1428:1819#0 1 1 76 55997 56072 [ATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGA] HWI-EAS406:6:9:412:656#0 1 1 76 56002 56077 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:7:82:415:680#0 1 1 76 56006 56081 [TCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCAC] HWI-EAS406:5:74:590:268#0 1 1 76 56009 56084 [GTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACAT] HWI-EAS406:6:66:426:1137#0 1 1 76 56011 56086 [TAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGA] HWI-EAS406:6:86:83:1170#0 1 1 76 56014 56089 [AGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAG] HWI-EAS406:5:28:1738:1473#0 1 1 76 56015 56090 [TTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC] HWI-EAS406:7:52:567:938#0 1 1 76 56018 56093 [GTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGA] HWI-EAS406:7:36:829:1115#0 1 1 76 56033 56108 [TTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCT] HWI-EAS406:5:22:117:626#0 1 1 76 56046 56121 [CATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAA] HWI-EAS406:6:3:1422:1893#0 1 1 76 56050 56125 [AGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTG] HWI-EAS406:6:75:599:1385#0 1 1 76 56058 56133 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACA] HWI-EAS406:5:67:412:1880#0 1 1 76 56111 56186 [ATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACAC] HWI-EAS406:6:92:1318:383#0 1 1 76 56112 56187 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCA] HWI-EAS406:7:60:1069:1928#0 1 1 76 56117 56192 [CAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCG] HWI-EAS406:5:82:677:1783#0 1 1 76 56122 56197 [AGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTAT] HWI-EAS406:5:16:298:1865#0 1 1 76 56137 56212 [GCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGAC] HWI-EAS406:7:40:1346:617#0 1 1 76 56160 56235 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:5:86:546:731#0 1 1 76 56195 56270 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:7:82:1252:640#0 1 1 76 56195 56270 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:22:1001:501#0 1 1 76 56226 56301 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:68:540:1042#0 1 1 76 56226 56301 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:73:674:1605#0 1 1 76 56237 56312 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:95:794:603#0 1 1 76 56237 56312 [GTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGC] HWI-EAS406:7:35:252:634#0 1 1 76 56244 56319 [CGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCAT] HWI-EAS406:5:8:286:980#0 1 1 76 56250 56325 [CTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCT] HWI-EAS406:7:2:863:788#0 1 1 76 56263 56338 [CGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCG] HWI-EAS406:5:71:330:1040#0 1 1 76 56265 56340 [CGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGA] HWI-EAS406:7:24:1479:1294#0 1 1 76 56271 56346 [AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAG] HWI-EAS406:6:9:352:544#0 1 1 76 56281 56356 [CCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGA] HWI-EAS406:6:26:317:742#0 1 1 76 56284 56359 [CGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGAC] HWI-EAS406:5:15:749:198#0 1 1 76 56285 56360 [ACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGA] HWI-EAS406:5:48:199:1803#0 1 1 76 56292 56367 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:6:74:1789:781#0 1 1 76 56305 56380 [ACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTAT] HWI-EAS406:5:68:91:1454#0 1 1 76 56310 56385 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:5:39:1537:832#0 1 1 76 56311 56386 [GAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGG] HWI-EAS406:6:3:1014:489#0 1 1 76 56312 56387 [CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGA] HWI-EAS406:7:63:606:2004#0 1 1 76 56317 56392 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:58:773:1386#0 1 1 76 56322 56397 [CACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGC] HWI-EAS406:6:5:746:1848#0 1 1 76 56328 56403 [TCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGA] HWI-EAS406:6:36:329:384#0 1 1 76 56338 56413 [CAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAG] HWI-EAS406:6:68:310:1837#0 1 1 76 56352 56427 [GCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGAC] HWI-EAS406:6:15:1389:1537#0 1 1 76 56356 56431 [CACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGACCCAC] HWI-EAS406:5:70:1186:1514#0 1 1 76 56360 56435 [GAGTGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:5:16:713:561#0 1 1 76 56412 56487 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:86:116:1250#0 1 1 76 56451 56526 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:7:22:1229:1224#0 1 1 76 56456 56531 [TGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTC] HWI-EAS406:5:75:885:1647#0 1 1 76 56465 56540 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:99:1323:2030#0 1 1 76 56471 56546 [GCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCAT] HWI-EAS406:6:36:1768:749#0 1 1 76 56472 56547 [ACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTAT] HWI-EAS406:5:64:1031:433#0 1 1 76 56475 56550 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:54:449:1311#0 1 1 76 56480 56555 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:821:1114#0 1 1 76 56481 56556 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:51:119:1731#0 1 1 76 56481 56556 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:6:54:1070:416#0 1 1 76 56623 56698 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:5:76:1124:1673#0 1 1 76 56655 56730 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:6:86:910:364#0 1 1 76 56655 56730 [CTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAA] HWI-EAS406:5:77:1007:635#0 1 1 76 56669 56744 [TCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAAT] HWI-EAS406:5:6:1619:1892#0 1 1 76 56670 56745 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:75:896:271#0 1 1 76 56680 56755 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:6:93:695:831#0 1 1 76 56683 56758 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:7:47:1300:725#0 1 1 76 56683 56758 [TGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGA] HWI-EAS406:5:9:1290:1387#0 1 1 76 56690 56765 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:19:599:1637#0 1 1 76 56692 56767 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:42:1233:1944#0 1 1 76 56693 56768 [GTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGG] HWI-EAS406:7:43:1340:1098#0 1 1 76 56697 56772 [TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGAT] HWI-EAS406:7:77:529:595#0 1 1 76 56701 56776 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1026:1702#0 1 1 76 56702 56777 [TGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAG] HWI-EAS406:7:74:472:989#0 1 1 76 56704 56779 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:38:1310:724#0 1 1 76 56708 56783 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:36:1704:1002#0 1 1 76 56709 56784 [CTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATC] HWI-EAS406:5:32:857:416#0 1 1 76 56713 56788 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:13:567:1632#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:72:1130:1035#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:11:320:1138#0 1 1 76 56716 56791 [TTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGG] HWI-EAS406:5:29:1531:1113#0 1 1 76 56721 56796 [TCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAA] HWI-EAS406:6:70:94:850#0 1 1 76 56723 56798 [TGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG] HWI-EAS406:5:56:283:533#0 1 1 76 56731 56806 [TTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTA] HWI-EAS406:7:54:629:1409#0 1 1 76 56734 56809 [TAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAG] HWI-EAS406:5:69:1170:963#0 1 1 76 56735 56810 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:5:59:659:573#0 1 1 76 56739 56814 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:7:10:1271:1176#0 1 1 76 56739 56814 [GAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGAT] HWI-EAS406:7:55:717:1077#0 1 1 76 56741 56816 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:5:49:951:1788#0 1 1 76 56742 56817 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:6:44:1440:809#0 1 1 76 56742 56817 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:5:61:1761:440#0 1 1 76 56743 56818 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:5:56:427:636#0 1 1 76 56746 56821 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:45:818:1084#0 1 1 76 56746 56821 [ATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGAT] HWI-EAS406:5:48:1421:738#0 1 1 76 56751 56826 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:5:46:1433:471#0 1 1 76 56753 56828 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:6:46:758:450#0 1 1 76 56753 56828 [TTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTT] HWI-EAS406:6:85:924:1183#0 1 1 76 56757 56832 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:457:1255#0 1 1 76 56760 56835 [CATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGAT] HWI-EAS406:6:51:1250:1394#0 1 1 76 56768 56843 [ATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATG] HWI-EAS406:7:43:348:1667#0 1 1 76 56769 56844 [TGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAG] HWI-EAS406:7:51:693:440#0 1 1 76 56780 56855 [CCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATA] HWI-EAS406:7:61:270:674#0 1 1 76 56790 56865 [TTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTT] HWI-EAS406:6:100:780:1104#0 1 1 76 56793 56868 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:51:375:1103#0 1 1 76 56799 56874 [GAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATC] HWI-EAS406:7:43:1468:442#0 1 1 76 56812 56887 [TAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAAT] HWI-EAS406:7:43:612:1832#0 1 1 76 56817 56892 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:3:328:1741#0 1 1 76 56828 56903 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:51:928:1230#0 1 1 76 56828 56903 [GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAG] HWI-EAS406:6:61:1150:157#0 1 1 76 56841 56916 [ATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGT] HWI-EAS406:7:45:1719:1574#0 1 1 76 56842 56917 [TTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTG] HWI-EAS406:7:22:1656:1000#0 1 1 76 56847 56922 [TATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTC] HWI-EAS406:5:40:782:1903#0 1 1 76 56864 56939 [TTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACC] HWI-EAS406:7:47:1399:1840#0 1 1 76 56867 56942 [CTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGA] HWI-EAS406:7:36:1214:128#0 1 1 76 56870 56945 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:6:67:659:674#0 1 1 76 56883 56958 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:5:34:482:363#0 1 1 76 56884 56959 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:6:31:1738:245#0 1 1 76 56884 56959 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:5:17:980:1498#0 1 1 76 56890 56965 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:6:43:1069:537#0 1 1 76 56890 56965 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:6:60:1237:1921#0 1 1 76 56892 56967 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:7:62:1556:1902#0 1 1 76 56892 56967 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:45:845:1882#0 1 1 76 56893 56968 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:10:320:1442#0 1 1 76 56894 56969 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:85:939:1848#0 1 1 76 56894 56969 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:6:21:964:532#0 1 1 76 56895 56970 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:7:11:715:1562#0 1 1 76 56895 56970 [TCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGAC] HWI-EAS406:6:83:1490:1557#0 1 1 76 56896 56971 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:5:83:1238:1840#0 1 1 76 56897 56972 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:6:51:1716:996#0 1 1 76 56897 56972 [TTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAA] HWI-EAS406:7:30:372:1304#0 1 1 76 56898 56973 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:19:739:163#0 1 1 76 56899 56974 [CTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACT] HWI-EAS406:6:99:1305:973#0 1 1 76 56900 56975 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:5:68:1372:1083#0 1 1 76 56902 56977 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:7:21:892:1201#0 1 1 76 56902 56977 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:42:1519:306#0 1 1 76 56903 56978 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:43:649:1817#0 1 1 76 56903 56978 [TTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT] HWI-EAS406:5:48:1749:825#0 1 1 76 56905 56980 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:63:1363:862#0 1 1 76 56906 56981 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:7:49:763:1786#0 1 1 76 56907 56982 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:6:80:1615:1056#0 1 1 76 56909 56984 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:36:1452:570#0 1 1 76 56911 56986 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:65:397:1874#0 1 1 76 56911 56986 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:7:71:215:1096#0 1 1 76 56914 56989 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:5:94:1025:901#0 1 1 76 56917 56992 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:6:51:1633:1293#0 1 1 76 56917 56992 [TGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTAT] HWI-EAS406:5:4:1293:1664#0 1 1 76 56918 56993 [GTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATA] HWI-EAS406:7:54:1634:1722#0 1 1 76 56919 56994 [TTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATAC] HWI-EAS406:6:67:934:751#0 1 1 76 56920 56995 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:47:490:994#0 1 1 76 56922 56997 [TTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCA] HWI-EAS406:5:44:1294:1484#0 1 1 76 56927 57002 [TAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAA] HWI-EAS406:5:84:526:435#0 1 1 76 56928 57003 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:45:1491:692#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:89:1540:722#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:10:510:1378#0 1 1 76 56929 57004 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:5:40:1126:1227#0 1 1 76 56938 57013 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:70:23:1316#0 1 1 76 56938 57013 [CACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTT] HWI-EAS406:5:63:428:752#0 1 1 76 56939 57014 [ACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTG] HWI-EAS406:6:61:1137:1230#0 1 1 76 56940 57015 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:5:56:1494:1229#0 1 1 76 56943 57018 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:5:49:1013:1360#0 1 1 76 56957 57032 [AAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGC] HWI-EAS406:7:14:1303:1511#0 1 1 76 56959 57034 [CTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGTA] HWI-EAS406:7:55:713:259#0 1 1 76 56976 57051 [GATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTA] HWI-EAS406:5:53:850:1541#0 1 1 76 57029 57104 [TGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCA] HWI-EAS406:7:56:1093:1703#0 1 1 76 57044 57119 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:86:1123:1484#0 1 1 76 57054 57129 [CTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCT] HWI-EAS406:5:69:567:774#0 1 1 76 57059 57134 [TGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAG] HWI-EAS406:6:44:1168:1730#0 1 1 76 57093 57168 [ATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTG] HWI-EAS406:7:52:50:1064#0 1 1 76 57097 57172 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:7:52:1393:1554#0 1 1 76 57100 57175 [GTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTG] HWI-EAS406:6:56:338:841#0 1 1 76 57101 57176 [TCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTT] HWI-EAS406:7:58:819:1006#0 1 1 76 57117 57192 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:5:36:8:1006#0 1 1 76 57122 57197 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/58204-58279] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5838-5980] There are [3] sequences in this contig [CCAGGAACCAGACTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGAC] HWI-EAS406:6:65:880:1505#0 1 1 76 5846 5921 [CTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCT] HWI-EAS406:5:68:1151:38#0 1 1 76 5858 5933 [CTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTTTTGGCCACAG] HWI-EAS406:6:51:497:1007#0 1 1 76 5885 5960 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59180-59255] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59564-59639] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6019-6218] There are [3] sequences in this contig [CTGCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTAATCC] HWI-EAS406:5:47:756:602#0 1 1 76 6019 6094 [CAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGG] HWI-EAS406:6:1:1675:1977#0 1 1 76 6118 6193 [AACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGA] HWI-EAS406:7:67:608:1846#0 1 1 76 6143 6218 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/60981-61108] There are [3] sequences in this contig [CCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCC] HWI-EAS406:7:49:917:519#0 1 1 76 60981 61056 [GCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCAT] HWI-EAS406:5:52:235:104#0 1 1 76 61008 61083 [CTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGC] HWI-EAS406:6:63:1158:1175#0 1 1 76 61033 61108 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61200-61321] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61378-61517] There are [3] sequences in this contig [CCTCTCAGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAA] HWI-EAS406:7:100:1619:467#0 1 1 76 61378 61453 [AGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAG] HWI-EAS406:7:53:1655:1631#0 1 1 76 61384 61459 [TTGGGTTCACAAGTACAGCTCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTT] HWI-EAS406:7:97:876:768#0 1 1 76 61442 61517 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61593-61724] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62569-62649] There are [2] sequences in this contig [GGTATGTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGC] HWI-EAS406:7:28:1332:725#0 1 1 76 62569 62644 [GTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGC] HWI-EAS406:5:33:728:1075#0 1 1 76 62574 62649 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62662-63010] There are [4] sequences in this contig [TTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCTTATCTTACTCCTACTAATACATAC] HWI-EAS406:7:60:936:1903#0 1 1 76 62669 62744 [TATAAGCTTATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAG] HWI-EAS406:6:4:1187:950#0 1 1 76 62713 62788 [CTAGGAAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAA] HWI-EAS406:6:86:576:1275#0 1 1 76 62839 62914 [AAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAG] HWI-EAS406:5:34:1205:1314#0 1 1 76 62844 62919 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63019-63141] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63695-63788] There are [2] sequences in this contig [GCTTTACAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC] HWI-EAS406:6:74:1616:1302#0 1 1 76 63695 63770 [AGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTCTCAGGTCCGTTTTAGTCT] HWI-EAS406:7:50:829:192#0 1 1 76 63713 63788 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63912-64054] There are [2] sequences in this contig [GTGTGTTAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAA] HWI-EAS406:7:40:667:1044#0 1 1 76 63973 64048 [TAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGATCTC] HWI-EAS406:7:82:846:2011#0 1 1 76 63979 64054 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64197-64278] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64487-64586] There are [2] sequences in this contig [AACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTG] HWI-EAS406:7:73:1763:946#0 1 1 76 64487 64562 [TTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCT] HWI-EAS406:6:16:1080:412#0 1 1 76 64511 64586 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64588-64674] There are [2] sequences in this contig [TTGTTCATTTTTAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGA] HWI-EAS406:6:68:677:1734#0 1 1 76 64588 64663 [TAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAG] HWI-EAS406:7:55:962:1888#0 1 1 76 64599 64674 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64700-64901] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6476-6551] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66034-66109] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66927-67002] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67589-67700] There are [2] sequences in this contig [CACCGCTCGCTTCTCTTTAAATGCTTCTCCAGTTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAA] HWI-EAS406:5:59:105:1182#0 1 1 76 67589 67664 [ATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGGTCGTTTGTAC] HWI-EAS406:6:34:1644:1455#0 1 1 76 67625 67700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67814-67915] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6801-6876] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69468-69657] There are [4] sequences in this contig [TCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGT] HWI-EAS406:6:14:421:1719#0 1 1 76 69468 69543 [CAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTC] HWI-EAS406:7:53:214:645#0 1 1 76 69477 69552 [AAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTCTTCTT] HWI-EAS406:7:79:858:1175#0 1 1 76 69510 69585 [GACTCTTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCACG] HWI-EAS406:6:7:930:1662#0 1 1 76 69576 69651 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69676-69917] There are [4] sequences in this contig [GAATCCTTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA] HWI-EAS406:7:11:1781:2005#0 1 1 76 69785 69860 [CAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGA] HWI-EAS406:7:56:1325:830#0 1 1 76 69820 69895 [AAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCG] HWI-EAS406:7:15:856:368#0 1 1 76 69840 69915 [GCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGT] HWI-EAS406:7:66:201:1411#0 1 1 76 69842 69917 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69978-70113] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/70804-71412] There are [13] sequences in this contig [GCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTC] HWI-EAS406:5:35:525:525#0 1 1 76 70860 70935 [TTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTAC] HWI-EAS406:7:50:1763:639#0 1 1 76 70882 70957 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:5:52:15:1698#0 1 1 76 70894 70969 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:6:1:212:802#0 1 1 76 70894 70969 [GCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGCACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAA] HWI-EAS406:6:46:878:1641#0 1 1 76 70941 71016 [TCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAA] HWI-EAS406:5:67:1116:707#0 1 1 76 71002 71077 [GATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCAC] HWI-EAS406:7:82:1452:1150#0 1 1 76 71026 71101 [AATCTTGCTGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAA] HWI-EAS406:7:14:1272:786#0 1 1 76 71111 71186 [TGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGA] HWI-EAS406:6:73:966:569#0 1 1 76 71119 71194 [TATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGACGCTAATGT] HWI-EAS406:6:23:116:1828#0 1 1 76 71128 71203 [AACACAACTCTCTTGTTGGTCACAATGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATA] HWI-EAS406:6:65:1248:1907#0 1 1 76 71236 71311 [TCATAGCAATCAGATAAAGCGAATTTTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCG] HWI-EAS406:7:71:632:736#0 1 1 76 71296 71371 [TTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAA] HWI-EAS406:6:14:583:1629#0 1 1 76 71321 71396 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71460-71625] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71712-72235] There are [9] sequences in this contig [CAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCA] HWI-EAS406:6:74:340:1085#0 1 1 76 71712 71787 [GATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATC] HWI-EAS406:6:69:273:955#0 1 1 76 71730 71805 [CCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAAAAAATCCAAT] HWI-EAS406:7:76:136:1326#0 1 1 76 71755 71830 [TCCAATTCCATCAACAGTCAATGAGAAAAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCC] HWI-EAS406:6:4:1341:1767#0 1 1 76 71794 71869 [TTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCT] HWI-EAS406:6:73:657:928#0 1 1 76 71845 71920 [GAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCTACAGGC] HWI-EAS406:6:69:608:788#0 1 1 76 71851 71926 [TACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACACCCTGTGCTAGGGC] HWI-EAS406:7:39:1441:509#0 1 1 76 71898 71973 [CCTGATACCCCGAAGGCAACACCCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCC] HWI-EAS406:5:42:630:1855#0 1 1 76 71939 72014 [TAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAGCCAATGTTGAGCTAGTCATACCCAAA] HWI-EAS406:7:3:247:1105#0 1 1 76 72121 72196 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72334-72409] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/7238-7313] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72551-72721] There are [3] sequences in this contig [GACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACAACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAA] HWI-EAS406:5:63:280:2016#0 1 1 76 72551 72626 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:684:1767#0 1 1 76 72623 72698 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:687:1768#0 1 1 76 72623 72698 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72764-72920] There are [3] sequences in this contig [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:58:933:1075#0 1 1 76 72764 72839 [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:96:138:1491#0 1 1 76 72764 72839 [GACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCC] HWI-EAS406:5:32:1193:610#0 1 1 76 72783 72858 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73189-73264] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73618-73693] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/74319-74394] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75333-75500] There are [3] sequences in this contig [GCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCATTTTTCTTATTTCGAAATG] HWI-EAS406:6:62:1449:2033#0 1 1 76 75333 75408 [TCGTCATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAA] HWI-EAS406:6:48:1707:1089#0 1 1 76 75384 75459 [CATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAGTGT] HWI-EAS406:7:65:460:691#0 1 1 76 75388 75463 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75502-75924] There are [5] sequences in this contig [CATAGATTCTGATCATCTTCGTCAAAACTTTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCT] HWI-EAS406:5:59:1508:1093#0 1 1 76 75502 75577 [AACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAA] HWI-EAS406:5:58:256:560#0 1 1 76 75611 75686 [AAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGAC] HWI-EAS406:5:46:1388:1875#0 1 1 76 75627 75702 [GAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAG] HWI-EAS406:7:17:923:1142#0 1 1 76 75653 75728 [AATGTGTTCCTAGCTGATGTGAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCA] HWI-EAS406:5:81:885:1582#0 1 1 76 75791 75866 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76023-76205] There are [2] sequences in this contig [GTATATCTTTAGCGATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACT] HWI-EAS406:6:79:1647:121#0 1 1 76 76077 76152 [TTATTATGTCCGGGAGAAGTACTGCTTATCTGAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATAC] HWI-EAS406:7:47:560:1036#0 1 1 76 76130 76205 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76211-76536] There are [5] sequences in this contig [TCAGACTCTGATTCACAAGCAACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCAT] HWI-EAS406:5:49:1688:659#0 1 1 76 76211 76286 [AACTCCAAGAATATTCAGAACCATCAGTCATTACACACTTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCC] HWI-EAS406:5:45:1087:1438#0 1 1 76 76263 76338 [ACAAGGGAACCGGTAATATATCGCCAGGCTTCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTC] HWI-EAS406:5:76:620:1542#0 1 1 76 76341 76416 [ATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGA] HWI-EAS406:5:25:1291:1892#0 1 1 76 76390 76465 [TGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGAGAC] HWI-EAS406:6:94:1284:238#0 1 1 76 76393 76468 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76543-76712] There are [2] sequences in this contig [GCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCCAAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATT] HWI-EAS406:6:32:835:791#0 1 1 76 76547 76622 [GATTTTCCTTGCTCCACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTT] HWI-EAS406:7:47:562:1860#0 1 1 76 76637 76712 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76854-76955] There are [2] sequences in this contig [CAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTG] HWI-EAS406:7:59:843:1966#0 1 1 76 76863 76938 [CCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTGTCCTTCATATATCGTGC] HWI-EAS406:6:30:986:1830#0 1 1 76 76880 76955 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77243-77318] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77350-77456] There are [2] sequences in this contig [ATGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAG] HWI-EAS406:6:2:544:249#0 1 1 76 77350 77425 [AGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAGTATTCAGGGGATAAAATAAACATTAGGCCAA] HWI-EAS406:7:9:136:308#0 1 1 76 77381 77456 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77795-77870] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77917-77992] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/78794-78971] There are [3] sequences in this contig [GCCATTATTTTCACGCAGATAAGTACGCCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAA] HWI-EAS406:7:65:1503:1068#0 1 1 76 78794 78869 [CCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCCAATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCA] HWI-EAS406:7:74:546:1750#0 1 1 76 78856 78931 [CTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAATCTCCTTGGTGG] HWI-EAS406:7:58:577:1389#0 1 1 76 78896 78971 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79009-79502] There are [9] sequences in this contig [TCATTGCCTATGCCCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAG] HWI-EAS406:6:94:925:835#0 1 1 76 79009 79084 [CCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACC] HWI-EAS406:5:25:1538:777#0 1 1 76 79022 79097 [TCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGCTACCATATCGCTAC] HWI-EAS406:6:54:1199:1064#0 1 1 76 79039 79114 [CTTCAGCAAAACGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGA] HWI-EAS406:6:30:384:1985#0 1 1 76 79079 79154 [CGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATG] HWI-EAS406:7:50:1278:1079#0 1 1 76 79090 79165 [CAACACAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTTT] HWI-EAS406:6:32:1409:445#0 1 1 76 79166 79241 [TCCAGAAAGATATACTTTCAACTCCTCTGTGTTTCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAG] HWI-EAS406:5:40:817:1242#0 1 1 76 79208 79283 [TAATTAACATGCACCTTGCCACCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAAC] HWI-EAS406:7:59:1471:766#0 1 1 76 79360 79435 [ATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAAATAAGCCATCCCCTCAGTAATGATTGGTCTC] HWI-EAS406:5:27:1356:1536#0 1 1 76 79406 79481 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79560-79686] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80173-80264] There are [2] sequences in this contig [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:40:61:86#0 1 1 76 80173 80248 [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:84:334:829#0 1 1 76 80173 80248 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80381-80456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80474-80593] There are [2] sequences in this contig [CCTTTAGTAGGTGGTTTGTCCCTGCCATGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTA] HWI-EAS406:7:31:547:1433#0 1 1 76 80474 80549 [TGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGATGACTAACAATGGTGTCAAATAGT] HWI-EAS406:7:51:987:613#0 1 1 76 80518 80593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80693-80806] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81002-81160] There are [6] sequences in this contig [CAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGATAAAACTATGAACAACA] HWI-EAS406:7:8:677:936#0 1 1 76 81002 81077 [AGAAGGAAAGACGATAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACT] HWI-EAS406:5:55:1278:821#0 1 1 76 81047 81122 [AAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAA] HWI-EAS406:6:7:456:1419#0 1 1 76 81063 81138 [ACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACA] HWI-EAS406:7:66:679:662#0 1 1 76 81065 81140 [GATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGA] HWI-EAS406:7:11:328:1615#0 1 1 76 81078 81153 [AAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGAGAAGCCA] HWI-EAS406:5:72:1783:898#0 1 1 76 81085 81160 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81206-81367] There are [2] sequences in this contig [AGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCCTGCAGCAGCGG] HWI-EAS406:7:41:368:198#0 1 1 76 81206 81281 [TCTGGGCCGATAGCCTGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCC] HWI-EAS406:5:63:1251:970#0 1 1 76 81256 81331 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81438-81567] There are [3] sequences in this contig [TGTTTGGGGACTTTATGATATTCTTCCAACACAACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCA] HWI-EAS406:6:49:1020:1226#0 1 1 76 81449 81524 [CCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCAT] HWI-EAS406:7:59:585:870#0 1 1 76 81489 81564 [CTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCATAAT] HWI-EAS406:6:69:1662:1635#0 1 1 76 81492 81567 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81782-81899] There are [4] sequences in this contig [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:57:1435:640#0 1 1 76 81793 81868 [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:70:465:1192#0 1 1 76 81793 81868 [CAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGAC] HWI-EAS406:5:9:917:255#0 1 1 76 81809 81884 [CCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATT] HWI-EAS406:7:86:763:397#0 1 1 76 81824 81899 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81934-82330] There are [9] sequences in this contig [ACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATAC] HWI-EAS406:5:7:1488:1277#0 1 1 76 81934 82009 [GGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAAC] HWI-EAS406:5:39:1072:726#0 1 1 76 81944 82019 [ATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCA] HWI-EAS406:5:29:1064:1350#0 1 1 76 81975 82050 [GCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGG] HWI-EAS406:6:46:915:308#0 1 1 76 81992 82067 [TTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCT] HWI-EAS406:7:73:614:1639#0 1 1 76 82001 82076 [GGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCG] HWI-EAS406:7:7:475:933#0 1 1 76 82014 82089 [AATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATC] HWI-EAS406:7:4:976:1341#0 1 1 76 82039 82114 [AAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATCTCTGATCTCCA] HWI-EAS406:7:92:1125:1958#0 1 1 76 82050 82125 [CCTACAGCAAGTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAA] HWI-EAS406:7:61:1097:746#0 1 1 76 82171 82246 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82392-82467] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82759-82857] There are [2] sequences in this contig [TATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGC] HWI-EAS406:7:74:1207:352#0 1 1 76 82759 82834 [CAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACA] HWI-EAS406:5:55:744:216#0 1 1 76 82782 82857 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82919-83082] There are [3] sequences in this contig [TTCAGTTTGAGCAGCATTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCA] HWI-EAS406:5:71:1520:1633#0 1 1 76 82919 82994 [TTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGG] HWI-EAS406:6:68:737:221#0 1 1 76 82935 83010 [ATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGC] HWI-EAS406:5:50:1274:668#0 1 1 76 82940 83015 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83150-83237] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83601-83697] There are [3] sequences in this contig [TCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAA] HWI-EAS406:7:47:909:638#0 1 1 76 83601 83676 [ACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGT] HWI-EAS406:5:57:263:916#0 1 1 76 83607 83682 [GAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATC] HWI-EAS406:5:56:421:1257#0 1 1 76 83622 83697 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84236-84447] There are [4] sequences in this contig [ATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGA] HWI-EAS406:5:97:1523:1879#0 1 1 76 84236 84311 [ATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGA] HWI-EAS406:6:51:787:579#0 1 1 76 84248 84323 [GCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTACGGAATACCTTGGATATTGATAGT] HWI-EAS406:5:11:1432:1580#0 1 1 76 84299 84374 [AGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAAAAGTATAATCTAACCTTAATATCTGTT] HWI-EAS406:7:56:662:2012#0 1 1 76 84372 84447 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84452-84888] There are [7] sequences in this contig [GACAATGTCGCAAACTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGA] HWI-EAS406:5:73:271:319#0 1 1 76 84463 84538 [CTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGAT] HWI-EAS406:7:60:710:960#0 1 1 76 84477 84552 [CATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAA] HWI-EAS406:5:43:480:1536#0 1 1 76 84519 84594 [TAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACT] HWI-EAS406:5:40:1113:280#0 1 1 76 84548 84623 [AAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAG] HWI-EAS406:7:53:1638:399#0 1 1 76 84568 84643 [AGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCA] HWI-EAS406:5:19:278:1957#0 1 1 76 84579 84654 [CTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGA] HWI-EAS406:5:12:647:1325#0 1 1 76 84610 84685 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85154-85229] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85786-85861] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86083-86165] There are [2] sequences in this contig [TTCGAGAAGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTT] HWI-EAS406:7:98:985:875#0 1 1 76 86083 86158 [AGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGT] HWI-EAS406:7:27:843:73#0 1 1 76 86090 86165 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86285-86406] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86740-87073] There are [6] sequences in this contig [TTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATG] HWI-EAS406:6:50:544:1942#0 1 1 76 86740 86815 [AAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAAT] HWI-EAS406:5:24:899:1507#0 1 1 76 86778 86853 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:5:27:651:758#0 1 1 76 86889 86964 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:7:36:939:388#0 1 1 76 86889 86964 [CAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAA] HWI-EAS406:6:44:1640:635#0 1 1 76 86963 87038 [AAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGT] HWI-EAS406:5:21:792:990#0 1 1 76 86982 87057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87100-87175] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87411-87579] There are [5] sequences in this contig [GTTCACGCTTATAGTCGTCCTGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCAT] HWI-EAS406:5:40:963:792#0 1 1 76 87411 87486 [TTTAGAAAATTCAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAG] HWI-EAS406:5:29:1062:180#0 1 1 76 87468 87543 [CAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGT] HWI-EAS406:6:33:1466:1038#0 1 1 76 87479 87554 [ATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAA] HWI-EAS406:6:74:560:575#0 1 1 76 87485 87560 [AAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT] HWI-EAS406:7:36:1097:534#0 1 1 76 87495 87570 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87843-87918] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88084-88247] There are [3] sequences in this contig [CAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAA] HWI-EAS406:5:28:328:364#0 1 1 76 88084 88159 [ACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAAT] HWI-EAS406:7:46:1492:580#0 1 1 76 88096 88171 [TCCATCAATAGAGTCCTTCAGATACTGCAGGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATA] HWI-EAS406:6:28:859:934#0 1 1 76 88172 88247 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88301-88432] There are [2] sequences in this contig [TTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGG] HWI-EAS406:7:81:841:1025#0 1 1 76 88301 88376 [CAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGC] HWI-EAS406:7:15:996:61#0 1 1 76 88304 88379 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88501-88726] There are [4] sequences in this contig [GCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCTTAATGGAGCAATTAAGATCTTCACAT] HWI-EAS406:5:44:57:1786#0 1 1 76 88501 88576 [TAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGAAGCATTACGCCTCATGTGTACCTCCAAGAATGTA] HWI-EAS406:7:54:1671:598#0 1 1 76 88579 88654 [TACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCT] HWI-EAS406:6:1:546:1653#0 1 1 76 88639 88714 [TGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCTATGACTTTATTT] HWI-EAS406:6:95:686:1267#0 1 1 76 88651 88726 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88728-89026] There are [7] sequences in this contig [TCCCAATCTTCATCGGTGAATTGAACAGATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATAC] HWI-EAS406:5:76:1379:738#0 1 1 76 88733 88808 [AGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTG] HWI-EAS406:7:31:1487:604#0 1 1 76 88854 88929 [TTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTC] HWI-EAS406:5:48:1276:1279#0 1 1 76 88870 88945 [TAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAA] HWI-EAS406:6:61:58:1492#0 1 1 76 88900 88975 [GTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAAT] HWI-EAS406:7:67:1335:152#0 1 1 76 88906 88981 [GCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGA] HWI-EAS406:5:96:791:1904#0 1 1 76 88929 89004 [ACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTA] HWI-EAS406:6:46:1014:1849#0 1 1 76 88951 89026 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/8886-8961] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89272-89444] There are [2] sequences in this contig [ACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTA] HWI-EAS406:5:46:1549:1266#0 1 1 76 89272 89347 [ACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGG] HWI-EAS406:7:42:1654:231#0 1 1 76 89310 89385 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89473-89625] There are [2] sequences in this contig [CTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAA] HWI-EAS406:5:54:722:1131#0 1 1 76 89549 89624 [TCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAAA] HWI-EAS406:5:47:1791:1774#0 1 1 76 89550 89625 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89972-90047] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/90365-90440] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91000-91075] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91078-91153] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92058-92240] There are [3] sequences in this contig [ATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTAGAGAGCGGATGGA] HWI-EAS406:6:64:403:2030#0 1 1 76 92058 92133 [GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTAGGAGGA] HWI-EAS406:6:73:248:1987#0 1 1 76 92121 92196 [ATCGTTTCCTCAAGAACACGCAAGTAGGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACG] HWI-EAS406:5:52:985:957#0 1 1 76 92165 92240 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92249-92456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95489-95564] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95826-96392] There are [46] sequences in this contig [ATGTTAGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCA] HWI-EAS406:5:51:460:1579#0 1 1 76 95826 95901 [TTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAG] HWI-EAS406:5:51:996:890#0 1 1 76 95836 95911 [TTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAA] HWI-EAS406:6:44:424:582#0 1 1 76 95838 95913 [CCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTAC] HWI-EAS406:7:55:1683:1558#0 1 1 76 95847 95922 [AAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAA] HWI-EAS406:5:37:874:1703#0 1 1 76 95855 95930 [AAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAAT] HWI-EAS406:7:60:861:1898#0 1 1 76 95871 95946 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:5:45:983:1815#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:6:50:725:1008#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:7:47:1467:1449#0 1 1 76 95873 95948 [TTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATT] HWI-EAS406:5:75:1577:1211#0 1 1 76 95875 95950 [GTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTA] HWI-EAS406:5:62:1054:483#0 1 1 76 95877 95952 [AGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTT] HWI-EAS406:5:3:1196:1080#0 1 1 76 95885 95960 [AGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAAC] HWI-EAS406:6:35:243:859#0 1 1 76 95903 95978 [GCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACT] HWI-EAS406:7:48:1680:776#0 1 1 76 95904 95979 [CAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAA] HWI-EAS406:5:84:623:1401#0 1 1 76 95916 95991 [AATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTT] HWI-EAS406:6:48:520:969#0 1 1 76 95929 96004 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:6:40:230:1515#0 1 1 76 95931 96006 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:7:47:1458:1361#0 1 1 76 95931 96006 [AAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTG] HWI-EAS406:7:54:1184:624#0 1 1 76 95934 96009 [TTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGC] HWI-EAS406:7:97:1095:736#0 1 1 76 95960 96035 [ACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTG] HWI-EAS406:5:51:1023:405#0 1 1 76 95977 96052 [TAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGG] HWI-EAS406:5:43:1053:715#0 1 1 76 95979 96054 [GCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCA] HWI-EAS406:5:48:1136:1031#0 1 1 76 95985 96060 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:5:62:1323:303#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:6:74:656:1327#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:7:47:1713:1453#0 1 1 76 95988 96063 [CAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCG] HWI-EAS406:6:57:630:1897#0 1 1 76 95992 96067 [AGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGA] HWI-EAS406:5:56:425:941#0 1 1 76 95993 96068 [GAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAA] HWI-EAS406:6:48:1251:976#0 1 1 76 95994 96069 [GATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAA] HWI-EAS406:7:21:585:1306#0 1 1 76 95998 96073 [ACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGA] HWI-EAS406:5:50:1455:1115#0 1 1 76 96001 96076 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:6:53:1165:1068#0 1 1 76 96003 96078 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:7:1:1156:1978#0 1 1 76 96003 96078 [CTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCA] HWI-EAS406:6:56:1607:1792#0 1 1 76 96006 96081 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:9:654:271#0 1 1 76 96007 96082 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:57:146:739#0 1 1 76 96007 96082 [GACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAAT] HWI-EAS406:5:85:313:1610#0 1 1 76 96009 96084 [AAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATC] HWI-EAS406:6:21:399:708#0 1 1 76 96013 96088 [GGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAA] HWI-EAS406:6:50:324:503#0 1 1 76 96015 96090 [GAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACT] HWI-EAS406:5:48:349:1571#0 1 1 76 96022 96097 [ATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCC] HWI-EAS406:7:41:1353:676#0 1 1 76 96036 96111 [ATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCCTAGACA] HWI-EAS406:6:93:442:832#0 1 1 76 96042 96117 [ACTATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTC] HWI-EAS406:6:53:189:1605#0 1 1 76 96095 96170 [ATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAA] HWI-EAS406:5:25:842:1349#0 1 1 76 96098 96173 [CCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCA] HWI-EAS406:7:49:569:1689#0 1 1 76 96103 96178 [ATTTCATCGAACACCTTTCGGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATG] HWI-EAS406:6:48:573:424#0 1 1 76 96302 96377 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96546-96743] There are [41] sequences in this contig [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:5:59:464:1284#0 1 1 76 96549 96624 [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:6:30:208:1363#0 1 1 76 96549 96624 [CAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAA] HWI-EAS406:5:39:1300:1111#0 1 1 76 96571 96646 [TGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAA] HWI-EAS406:7:52:386:1253#0 1 1 76 96578 96653 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:35:1367:1803#0 1 1 76 96580 96655 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:39:947:220#0 1 1 76 96580 96655 [ACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAAT] HWI-EAS406:7:26:1194:1131#0 1 1 76 96583 96658 [CTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATC] HWI-EAS406:7:7:1501:844#0 1 1 76 96584 96659 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:5:54:130:722#0 1 1 76 96590 96665 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:7:26:1334:829#0 1 1 76 96590 96665 [ATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATA] HWI-EAS406:5:39:225:226#0 1 1 76 96591 96666 [TCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAA] HWI-EAS406:5:25:1166:904#0 1 1 76 96592 96667 [CTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAAC] HWI-EAS406:5:72:728:1108#0 1 1 76 96593 96668 [ATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAA] HWI-EAS406:7:97:1596:710#0 1 1 76 96597 96672 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:6:77:1297:372#0 1 1 76 96603 96678 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:7:60:325:1845#0 1 1 76 96603 96678 [CTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATA] HWI-EAS406:6:46:1493:1364#0 1 1 76 96604 96679 [CTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAAC] HWI-EAS406:6:97:1626:350#0 1 1 76 96606 96681 [TTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACA] HWI-EAS406:6:89:439:326#0 1 1 76 96607 96682 [CCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAA] HWI-EAS406:5:52:846:1834#0 1 1 76 96612 96687 [CATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAA] HWI-EAS406:7:27:1352:654#0 1 1 76 96614 96689 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:5:12:18:1692#0 1 1 76 96615 96690 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:6:79:1502:1763#0 1 1 76 96615 96690 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:6:20:1277:1200#0 1 1 76 96618 96693 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:7:20:482:1782#0 1 1 76 96618 96693 [GATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGA] HWI-EAS406:5:88:761:589#0 1 1 76 96621 96696 [TTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGAT] HWI-EAS406:7:71:96:562#0 1 1 76 96624 96699 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:5:84:1251:1593#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:6:39:612:1266#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:7:29:339:747#0 1 1 76 96626 96701 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:5:35:237:1240#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:6:136:1637#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:19:1295:156#0 1 1 76 96628 96703 [ATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACT] HWI-EAS406:7:32:520:1318#0 1 1 76 96629 96704 [TAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTC] HWI-EAS406:7:88:48:1089#0 1 1 76 96631 96706 [ATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTG] HWI-EAS406:6:38:866:435#0 1 1 76 96646 96721 [AGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTT] HWI-EAS406:6:21:273:2005#0 1 1 76 96653 96728 [AAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCT] HWI-EAS406:6:65:1490:908#0 1 1 76 96655 96730 [TCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAA] HWI-EAS406:7:83:681:1286#0 1 1 76 96658 96733 [ATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATC] HWI-EAS406:5:17:710:1002#0 1 1 76 96664 96739 [CACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCCAAA] HWI-EAS406:6:63:971:1449#0 1 1 76 96668 96743 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96752-97468] There are [78] sequences in this contig [CCAAGTGCAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGG] HWI-EAS406:7:98:1610:812#0 1 1 76 96801 96876 [CAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACT] HWI-EAS406:7:24:560:1540#0 1 1 76 96808 96883 [AAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTT] HWI-EAS406:6:22:463:1392#0 1 1 76 96809 96884 [TAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTC] HWI-EAS406:6:25:466:1248#0 1 1 76 96822 96897 [AAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCC] HWI-EAS406:7:90:205:1555#0 1 1 76 96823 96898 [GCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAA] HWI-EAS406:6:27:1215:637#0 1 1 76 96828 96903 [AAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTC] HWI-EAS406:5:69:143:474#0 1 1 76 96831 96906 [CTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGG] HWI-EAS406:7:2:646:1440#0 1 1 76 96839 96914 [AAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAG] HWI-EAS406:6:69:1608:993#0 1 1 76 96865 96940 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:6:1:1134:1601#0 1 1 76 96867 96942 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:7:27:1186:269#0 1 1 76 96867 96942 [GACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACT] HWI-EAS406:6:47:1520:1770#0 1 1 76 96880 96955 [GCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGT] HWI-EAS406:7:2:1474:1109#0 1 1 76 96885 96960 [GGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACG] HWI-EAS406:6:5:1509:1517#0 1 1 76 96899 96974 [GGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGG] HWI-EAS406:7:33:201:1509#0 1 1 76 96900 96975 [TCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTG] HWI-EAS406:6:63:690:1073#0 1 1 76 96909 96984 [TTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGA] HWI-EAS406:6:63:980:824#0 1 1 76 96921 96996 [GGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTT] HWI-EAS406:6:74:319:1980#0 1 1 76 96925 97000 [GCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCT] HWI-EAS406:7:15:1248:709#0 1 1 76 96936 97011 [GAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCC] HWI-EAS406:5:27:1278:665#0 1 1 76 96938 97013 [GGCTTCGCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG] HWI-EAS406:5:16:1197:1307#0 1 1 76 97015 97090 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:12:498:898#0 1 1 76 97055 97130 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:15:449:1383#0 1 1 76 97055 97130 [TCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGT] HWI-EAS406:7:12:886:602#0 1 1 76 97057 97132 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:5:72:551:2005#0 1 1 76 97059 97134 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:7:54:1622:833#0 1 1 76 97059 97134 [TGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCC] HWI-EAS406:6:15:617:645#0 1 1 76 97063 97138 [TCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGG] HWI-EAS406:6:71:1065:1848#0 1 1 76 97065 97140 [CTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCT] HWI-EAS406:5:21:1187:208#0 1 1 76 97068 97143 [GGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTC] HWI-EAS406:6:74:1088:195#0 1 1 76 97073 97148 [GTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGC] HWI-EAS406:5:79:1567:1339#0 1 1 76 97077 97152 [GCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTC] HWI-EAS406:6:63:1541:1622#0 1 1 76 97080 97155 [CTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCT] HWI-EAS406:5:62:1176:406#0 1 1 76 97081 97156 [GAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA] HWI-EAS406:7:29:1109:1686#0 1 1 76 97085 97160 [GAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGT] HWI-EAS406:6:76:1137:734#0 1 1 76 97087 97162 [GGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGA] HWI-EAS406:5:17:466:948#0 1 1 76 97089 97164 [GGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGAT] HWI-EAS406:5:48:1356:1247#0 1 1 76 97090 97165 [GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATG] HWI-EAS406:5:76:713:1442#0 1 1 76 97091 97166 [TGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAAC] HWI-EAS406:7:9:1331:1496#0 1 1 76 97095 97170 [AGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCG] HWI-EAS406:6:40:1350:738#0 1 1 76 97097 97172 [ATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCG] HWI-EAS406:6:49:1132:1723#0 1 1 76 97099 97174 [GCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAG] HWI-EAS406:6:25:1330:1345#0 1 1 76 97101 97176 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:8:1401:420#0 1 1 76 97106 97181 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:9:1271:618#0 1 1 76 97106 97181 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:3:1199:1835#0 1 1 76 97111 97186 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:52:610:424#0 1 1 76 97111 97186 [TGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTG] HWI-EAS406:7:4:1026:1717#0 1 1 76 97114 97189 [TGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCG] HWI-EAS406:7:28:1674:1087#0 1 1 76 97117 97192 [TCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCT] HWI-EAS406:5:15:1212:1925#0 1 1 76 97119 97194 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:5:2:608:141#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:523:1013#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:524:1015#0 1 1 76 97120 97195 [GCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCT] HWI-EAS406:6:2:776:1475#0 1 1 76 97121 97196 [CGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTA] HWI-EAS406:6:90:484:209#0 1 1 76 97125 97200 [GAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGG] HWI-EAS406:7:68:506:1429#0 1 1 76 97128 97203 [CGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCT] HWI-EAS406:5:64:801:1492#0 1 1 76 97133 97208 [GCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTC] HWI-EAS406:7:30:1512:839#0 1 1 76 97134 97209 [CGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAAT] HWI-EAS406:6:82:42:1860#0 1 1 76 97138 97213 [TCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGA] HWI-EAS406:5:21:576:1666#0 1 1 76 97143 97218 [CGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAA] HWI-EAS406:7:67:976:1926#0 1 1 76 97144 97219 [GTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAG] HWI-EAS406:7:72:284:1217#0 1 1 76 97145 97220 [CTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCA] HWI-EAS406:6:90:1324:603#0 1 1 76 97148 97223 [CGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGA] HWI-EAS406:7:55:648:1548#0 1 1 76 97150 97225 [TGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGT] HWI-EAS406:5:68:541:1504#0 1 1 76 97165 97240 [AAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCG] HWI-EAS406:5:33:1462:1304#0 1 1 76 97167 97242 [AACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGC] HWI-EAS406:6:39:296:1568#0 1 1 76 97168 97243 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:4:379:1940#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:23:160:476#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:7:95:818:1496#0 1 1 76 97172 97247 [CGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGG] HWI-EAS406:5:71:1012:1264#0 1 1 76 97173 97248 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:5:47:1098:608#0 1 1 76 97179 97254 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:7:9:1400:1506#0 1 1 76 97179 97254 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:22:853:1626#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:59:731:114#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:7:99:1783:1300#0 1 1 76 97180 97255 [TCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCAC] HWI-EAS406:7:17:1109:924#0 1 1 76 97182 97257 [CCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCC] HWI-EAS406:7:35:510:222#0 1 1 76 97185 97260 [CCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCCA] HWI-EAS406:6:51:1260:1409#0 1 1 76 97186 97261 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/97747-97908] There are [2] sequences in this contig [TGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAGTCCCTAAAACCTGCAAGAAAGTCAGCTACACC] HWI-EAS406:5:85:282:494#0 1 1 76 97747 97822 [ACTACGGCGCCGGGATGTGAGCATTGACGAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGC] HWI-EAS406:6:84:640:795#0 1 1 76 97833 97908 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/98348-98423] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/99899-99974] There are [0] sequences in this contig -------------- next part -------------- A non-text attachment was scrubbed... Name: assembly_test.pl Type: application/x-perl Size: 762 bytes Desc: not available URL: -------------- next part -------------- >AC189398-KBrB056G23 ACTCTCGTGATGATCCACGTTGAAAACAGAGGATGATACTTCGAGAATCTTAGGCACATAGGGATGAGGG TTATGAGTATTGTTATTGCTTTCTCCTCCTCCTTCGTAGTTCCGGCGGCTGAAGAGGCCGTAGGAGACGG CGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGA AAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAAT TTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAGTTGTTTTCTTCGAGCTTCTTGTTGTTTCCACCA TTAGAGAGAAAGTAAGTTGTACTTTAGGTTGGTGATGAAAGATGGTTTGAAAATACGATTAAAAGACCAA AGTTAGTGGAAGTGCTAAGACTTCAAGGTTAAGTTCTGTTTTTTTTTTCTTGGTGTTTAGAAAAAAATAT GAGAAGAAGAAAGAGATTGAAGAGAACAAGATCTGATGTCCAAGTTGATGTGTGAATTCATTCCCAACTT TACTTTTTTGGGTTTCTGATACTATTCTAACGTTATTTTTGATGGTTGACAGCGACTGGAGAATCGCTCT GTGGAACGGAACATCCAAATGTTGATTACATTGAAGGTTTGCAGTTTGTTTTTTTTTTCAAATATGACTT AAAACAAAAAGTGAACCACAAAACTAGCTCATGATTCTTTTTGGAATTTTCATTTGGCATATTCATTTCA AAAGTTTGGATTATTCACGAAAATACTATTATTTTTTCTTCCGAAAATGAGTATTTTACTCTATTATATC ATTTTCATCATGTATTTACAATATTACCATTGCAATCAGTACCAATCCACCATGAACAACCAATTTGAAG CTTTTAATGCACCAAAGTTTCGATTTTTACCCTTCATATCTCATTACTTATGCATACAAATTACATCTCT TTCATTTTTTCTCTATATTCATCAAAAAAACCAAGATTTTGATTCTAAACTTTGTAAAGTTCAAACTCAT AATTCTTGGTCATTAACAAGTGGGTTTGTTTCATGGTGAAATAATATGTGATAGAAGAAGCTAATTAAGT TATCTCGTTGGTTGAAAGTATGAAACTAATTTTTTTCCAGATTTGTTCGTCGGAAGACTTCCGTCTAAGT TTTCTCGTCGTAGAAGACTTATACGGAAATCTTATCTTCAATACATAGGTTAATTTTGCAATTGACTTTA AGTGTGTTTTTAGAGACGGCTTCTTTGGAAGTTAACACCAAAATCTCGAAAATACCAGAGAAGACTTTCT AGAAAGTCGTCTAGGATACACAAGTTAGTTTTGCAATTGACCGGATTATGACAGAATTTTGATGTTCTCT AGATAACTTACACGGAAGTCTTCCCTGTAAGTCTTCCGAACTCTCAGTAGAAGTCTCTTCACTGTCGATG AAAGTCGTCTCAGGTTATTTTTGCAATTGAAAAATAAAACTTAAATATTTAATTTTAATTAGACAAATTC CATGTAAGTCTTTCGGACTTTCGGTGGAAGTCTTCTCACTGTCGGTGAAAGTCATCTCGGTTTATTTTGT AATTGAAAAGTAAAACATTAAATATTTAATTTTAATTAGACAAATTCCATGTAAGTCTTCCGGGAGACGA CTTACACGAAAGTCTTCCAGAAATTTATTCCAAGATTCTGGTCAAACCTTGGTTATCACAGAAGAAATTC TGGTAAATCTTATGCCGGAAGACTTACATCGAAGTCGTCTAATTAAAATTAAATATTTAAGTTTTATTTG TCAATTGCAAAAGACATGAGACGACTTACATAGAAGTCGTCTTGATAAATGTAATCTTTAAGTTTAGTTT TTCTAGTGGAAGACTTCCATGTAAGTCTTCTAGAAAAAAATCAAATTTCTCACATAGTTCGGTCAATTGC AAAACTAACATGTTTATCCTAGAAGACTTATCGGTAAGTCTTCTCTGATATTTTTGAGATTTTTTCAAAA ACAAAAGTAAGCTGATATTTACAAAGGAAGACTTCCAAAGAAGTCTGCTGTAGAGTAGACTTCTATGGAA GTCTTCCTTTGTAAATTTTCAATTTCAAAAATGACCTAAATGGAAGACTTCCTAGAAGTCTTCCGGCAGA CGACTTCTGTGGAAGTCTTCTACGTCAATGTTTCATAAACTTTCATTTTCTCAAAAATTATAAATGCTTT TTAAAATTTTCTTGTTGATTCATGTATATTAATCGATATTAGGGTTGCTGAATAAAATACATAAATTAAT TGATTTTAATTATGAGGTTAGCAACATTCATGTTTATGAATGTTTTTAGCTAGTTCGAGAAGACTCTCAC ATTTTTTTTGTAAACTTATTAAGTAACTTTAAGATATTTTTTTAACTTTCAAAAGTGTCAAGTAACTTCA ATATTATCAAGTTTAATGGTTTAATATATCTTCTTAGATCATAAAATATACTTTTTAATTTTCATGAGAT TTAAAGTTTTAATTTTCACTTAAAATTTCCGCCTAAATTTTAATTTCCCTCTTAAATTTCCTGTTTACAT TTTATTTTTCCGCTTGAAATTTAAGTCTTCTGAGAAGATAAGCTTGAAAACAAAATTTATATGTTTTAGA AGATTCTTTCAGAAGGCTTCCATATTTTCAAATTTTCCCCCATCAAAATAATTTTAATAAAATTTATAAA TTATTTCTAAGATCTAGAGTATGAGAAGACTTCCTAGAAATCTTCTCCGAGAAGACTTATAAAGCCTCCA GAAAACTTCCAGGGGTTATATTCGTAAAAGAACATTCTGTCTATTTTTGTCATAAGGGATACTTGTAATT TCACTAGTTTTTTATGTTACTTTTGCATTTGATTCAAGTTGGGGGTACTCGAAACCTGAAACTTCTAGTA TATATTAAGTATATATGGGTGTTTCATTTTATTTTTGGTATTCTGGGTATTGTTTAAGTTTCAAATTTTA GTTTTTGGGTATGATTTTGGGTTTCAGATAAAAATTTAGATTTTCAAAAATATAATTCGGATAATCAGAT AAAACTTCAGATATTTTTCATGTCCTTGGATCAAATTTTAGAAAACATTTCTCATATTTACTCATATTTA AATATTTTCAGGTATTTTCTGTGTGTATTAGGTTTTTTTTGTTGGACCCGACATGACCCGAACCGAATCC GATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCG ACCCGGATCCGAGAAGACCCGAACCGAGAATTTCAAATTACCCTATCGGGTCTTAAACTCTTAGACCCGA AGGATCCGGACCCACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGA GTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCAACTAGTCGACCTTATTA GTAAGAACATATCTAACCCATCTTTACATTTTTTTTATATTTTCTTCTAAAATAAATAAATTATATTATA GAAGTGGATTTACTTTATTATATGTTTTTATATATAATCTTTGTATTTTAGACAGAAATATAGAAACGAT TTGAAAATGGTCTAAATCTTTTTACCAGAAAAACTTTCCTAACATCTGTGAAGATGAAAATATTAAAATA TTACTTTAGTTAGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAAT TTGGTCTGGACAATTTGGTCTGATACAATTTGGGCTTAAAAAAATAATGTCCATTTGGACTGTTGTGTCC ATTTGGACAACCCATTTGGATTTGGGCAGTTCAATTGACGTCTCTAGCTGTGGACTCACTGGTCGGCTAC ATTTATTATCTCTCAAGCTTTTTCCTTTTACTCTATACTTCAAATTCGAGGAAACATTTCTGCAACTAAT AGAGATGACGTATAGATGAAACCAAGTTTAAGTTAATGTCTGATTTAAAACCATTAGCTTAAACTCATAG CAAAAGATAAAAGAGAAAAAAAAGAAGAAGAGAATTTGCTTAAATCATACGCACAATGTATATAACCATT GCTTTTAACTTGCATGATTGCATCCGAATTTAATTTTATTACAGCCAATGAATGCACAAATAGAACGAGT GATATTCAAATGTTTATTTTTACTTGGTTTCTGTGTCATACACATTATTATAATCCTAAACCATCCCGGT TCTTAACATCCAATACAATGGTTATCTCCCCCCGGTTATTGAAACTAAAAGAGCTTCACTTGCCAGTGTA ACGAGGCTTACGTTTCTCAGCAAACGCAGCTAATCCTTCCAGACGATCTTCAGTGTTTAGAAGCTTCTGA TAACACATATCCTCTAGCTCTAATCCTGAAGCCATATTCGTCTCTATTCCTTCATCAATCGCTTTCTTCG CCATCTTTATCGCCATTGGACCTTTCTCATTTATCTGCTGAGCCACTTCCATTGCTTTCTTATGAGCCTC ACCCGCCGCAACACAAAAGTTAACTAGCCCTACACGACAACAACAACAACAAAAAAGAGAGTATTAATAT AGGAAGACTTGAATTTGAAGACCTTTCCCTTGATGAACCAGAACTAGAGGCTGTTGTGTTTGATGGAGAA GATGAAGATGAGTAAAACAATTGATCTTTGACATTGAACGTTTTTATTTTTAGTTGTGTTGCTTGATATT TAATACTTTGCTGGATTTGTGTGGTTTAAAGTTTACACTTTTAATTTTCAGAATTTTATTTTATATGTGG GTTTATATGATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATA TACGCTTCCAATACGGATCCGCTTCCTAGTTTTTTGAAAAAAATCGTTTCTACGCTTCCATACGATTCCG CTTCCGCGTTTCCGCTTCCGTTTCCATGTAACGTAGGTATTAAGAATCATCCTCTATTTGGTGGGTGTAT ATGTCATAAAAAAACAAGTTCACAATTCAACTTTAATAGTCACAGACCTTTCTTTGCAGCTTCTCTTGCA TCAATCTTTCGACCAGTGAATATAAGTTCCTTTGAAACTGATCTTCCAACCAGCCTTGAGAGTCTCTGTG TCCCACCAGCACTGAATAGAAGCCGAGAGAAAGAAGAAATCATCAGAAGATTGATAAAATGGGGAGTCAT GGATGGAGCTTATAGTATATATATACCCAGGGATTACAGCGAGTCCTGTTTCAGGCAAACCAAATACTGC ATTTTCGCCTGAAATATCGAGCAAGAACTGGAGATTATAGCAGAAAGACTCTAAATAAGAAAAATGATGA CATGTGAAAATAGAATACCGCAGATTCGAAGATCACAGGATAAAGCCATTTCGAGTCCACCTCCTAGTGC CACACCTTCTATTGCAGCAATAGTTGGGATACTCAATGCCTAGAATACACAAGTCACTATTTATACATTC CTCTTCTCTTTTATATAAGTTCGAAGACTAATAAATTTTCCATATCTTGATAAAGTAAAAGTAAGTTTAC AAATGTAGTCGATTTGAAAAAGAGTTTGTTGAATAGGGATTAATACCTCTATGAAGGAGAACATGTAGCG CAAAGAGTTGACATATGTATGAACCTCAGATGGACTCATAGTTCTACGTTCCTGACATGGCAATAAATAA GTAAGAAATAAAACATACAAATTGTTTCAAGCATGGGTGACGAACCCTATTGAATACGAACATTCCAGAA AAACTACCTTGAGATCTGCACCTGCACAGAAAACTCCAGGAACCAGACTTGTGATCATCACAACTCTAGC GGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTT TTGGCCACAGGCCTGTCTAGATTGACCTCGACAATCCCTGTAAATCAATCACAAACTCACATTAAGCACT GCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTA ATCCGACAGTAACAATGCTCAGACATCCAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTC AGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGAAGCAAATAACAC ATCCAACAACGGTATTAACTAACCCTAACAATAGAACCCAAAAATTACCAGAATCGGAACCAGAGAGACG GTTAAGCTTGACAGATTCAGGCAGAGCGGTTTCAATAATGAGAGTCCGGCAGGTTTGAAGCATGAAACTT CGGCTAAGAGATTGTTTTCCGGCTAACTGGAGCAAACTATCACGGCGGAGATACTTAACGAAGCTCATCT TCACCGTCTCTGACTCCAAAGTTTTGATTTTTAGTCCTGTTAGGTTGAAAATGACAGGCTTTACATTCCG GTTGTGTCAGTCCGTAGTGGTCAATGCTTATCCAACCAAGTTCTTTCTTTTTGGTTTGGGTTTCCGGTTC GGTTTTTTAAACTAAATTGAATCCGGTCTGATCCGGTTTGTGTTATTTACCGAGTTTTTCTTCTTACTAT GGAAGGAAGAATACAACAAGAAAAAAAAGAAAAGAGAGTGTTAATAGTACATTGTTTGTTGGTGAAGCCT CCTCCTCCTCCTCCTCAAAAGACTCAGACTTTATGCACCCACGCATCAAGTCGAAGCTGTTTCAATGGCG GTCCTGATTTCCCTTTCTTTCTCTGAGGGCAACTCCATTTTCCTGCAATCTCCTCTCCCCCAGAAAGCTG ATGATTCCACATTTCACCCAAAATTCTTCTCTTCTTCTTCTTCTTCTTTCTTTCTTCATCTTCTTCTGTG GCCATCTTCTTTAGCTTTTTACTTCTCGAGCACTCCCCCAGAACTCCTCTGATTGGTTTCTTCATGGAAC TTTGGTCTCTTGATTCTCTAAATCTTGCCTTCTTCATAGTTACAAATCCAGTTTCAGCGTCAACATTTTC CTTGTCATCTGATTCTTGGTTTACTGACTCCATATTTTCTTCTGGACGAGCCTTTTGAGCAGCTTTTCTT GGAGACATTTGCCTGTTGGAAATGGTTTCTTGGATATGTTTTGGTCTCAGCTCCTGTAATGATTGTGGTT TTGGGTTGTAGCCTTTGGGGATAAAGTTTGCTTCTTCTTTCGTTTCACTGAACAATGGTTCTTGCTTGAA GCTTGAATCTTTGTCCTCTTTTTTGGTTGAAGCATTGAACAATATAACCGTTGACTTCTTTTCCCTTTCT TGGTTTGAATATGCAGAGACCTCCTTGGCCTCCTAACATGTACAAAATTGAGAAAGTGTCAATGGATTTT CAAAGTGATCCCACACAAGTCTCTTTCTTTGAACTACAAGGTTCAAGAAGATAGCCTACCGTGCAGTCAT TTGATTTTAACCAGCCAGGAGCAATAATAGTCTCTTGCTTGCTCTTAGTTTTTCGGAAAATACCAGAACT ATTTTCTCCCTCAGTGTCACTCTCCTCAATGATTAGTTGATCATATTTCTCAGAAGAACAAACTTCAATT TCATGAGTGTCTGAAAGCTGAGGAGATTCATACACATAGCTTGAAAACCAGTTCCCAACATCAGGAGGCT CTGATAAAAGAAATAAGATTGCTAAGAAAACAGAAACAGTAATGACTTATGTACCAAATAAACTAGTTTT TTACCAACCTGAAAGAAGATGCTGAGACTGAGAGAAATCTGCAACCTAACTAGTAGCAAGAAGCATCAGA GAGCTAAGAGAGAAACATAGATTCATATAAGATAATCTAACACTAAGGCATAGGAAGTAGAAAATTATGT ACCTTTGCAGAAGAAGAGACAAGTTGTTGCTCAAACAAACTAGGACAAACATCATCTTTTCCTTCAATGT CTTTAGTCTCTTCTTCTGCTTGCGTCTCCTTTACACATTCACTATCTTCTCCACCAACCGAAAAGCAAAG AGCATCATTTGTATCCAGGACGGGCGGTGATTCATAAGCATAGCTAGAAAACCAATTGCCTATATCAGGA GGTTCTGAGAAGCACACACATAAAAAGTTACAAACATAACCCATCAAAAAAAAAAAAAAAGCTAGAGACT TTCCACGTTCATCCATAAGTTTAACAATCAAAAGGAGTATATACCAGAAAGGAGTGGTGACTCATAGAGA TTATTTGTCTCTTGAATCTGCCACAAAAGTTAAAAACAAAAAAAAAAATTGAATTTTAAAAACAAATCAA AGAAGAGTGAATCGATTGTAACCTGACTCACATTCTTGTTCATAGGTTTATGATCTTTGTCCGCACCAAG AATGTATTTATCTTCCTCTCTAACAGAAAACCCGTTCGGTTCTCTTTCACCGTCGTCCTTGCCTGAAGAA CTCAGTGCAAGAGATTCATAGACGTAACTTGAAAACCAATTCGTAATATCTGGCGGCTCTGTAAATTAAA AAAAAATAAAAAATAAAAAATGTCAACAACAAGACTTGAAAATTGCAATTAGAAGAATTCGCAGCATTCA ATTCAAATAACTCACGGGATATGGTAAATGGAGAATCGGAGTATCCAATAGGTTCCTGCCACACTCAAAC AAAGCTCGATTTCTCCGCTAATTCCCCAGAAATTCAGGAACAAAAATTAGAAAAAAATAAGGATAGAAAT GAATTTCTCACCGCCGCTGAGTGAACTTCTTCCATTAGATTACGACGTCTCTTGCTCTCTTTGCTTTTCT TCCTCACTCAGGATTCTGAGATGTTTATTTTACTTTTTTCCAATTTTTATGATTTCCCGCGCTTCTTTCC TGAGAAGCGGAAAACCAAAATTATGATACTGGGCCTTTTAATATCAATGGGCTCTTTGCTCGCAAACCAA AATTGATCAACACACCTTTCCCAATATCTATATTTGATTTTTTTTTGGTACACGATGAATATAAATTATC TGGAAGCACATAACAGCAGATGTGTTGGTGCTCCGATAAAACCGGTGTGAGCGTTCGAATACACATTTAA ACTAGATTAAACTTGCACGGGATAAATATTATATATTATTTTTATATTATATATTTATAGTATATTATGA AATAATAAATATATATTGAATAATTAAAAAGTCATTATCTACTACTTATATAATTAAATTCGTGCGAACA TATAAATAATTTTGATAAAATCGAGAAAATATTTTTTCTATTTGATATGATATATAATTAAATTTAAATG ATAGTAACATATAGAGAAAAAGACTAGGATAGCACTAAACCAACTTTTTGTTCCCAAAGTAGCACTCAAG GCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATATACACTTATACCCCTTGGGTTAATTAATC CAAACCTTATGGTTTAGAGTTAAGGGGTGGTGTTTTGGAATTAGGGTTTAAAATTTTATAAAAAATAAAT ATTAAAATAAAAAATAAAAATTTTAAAAACTGTTTTAAAAAGTATTTTTAAATTATAAAAAAAAAAATTG AAAAAAAAAATAAAAAAAAATTCGAAAAAATAAAATTTCGAATCTGAAAACATATAATCTGAAACTATAA AAAAATTCTTTTTTTAATTTTTTTAATTTTTTTTAATTTTTTTGTTTATTTATTTAATTTTAAATCAAGG GTATTAGGGATATTTTACCCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAG ACATAAACTTCAAAAGGTGCTATTATTGACAATTGCCCTAACATATATATGATATATTTTAATATTAATA TTTATTAGATGATTTTTTTGCTCATATTTTTTTTTTATCATTTGTATCTGTTATAGCAAAAAGTCTAAAT TAGTGATAACAAAATTTTCACGGTGGGATTAATTGTTTAAGAAATTTATAATATTTTAAAAAATTAAGTT GTCAATATTTGTTCAAATTTTTTATCAAAAAAATGTTCAAAGTAAATTTAAAATTAAGATATTTATGTAT TTTTATATGGCATATAGTTTAATTTAAAATGATACATATATTTAAATATCTTTTATTTTTGATACTTATT AAATGAGACATTCAACTTCTATTATTTTTAATTATTTGTATCATGTCATCACAAAAGTTTTAAATCATAG TTCACAAAATTTAAATGTGAAACTTTTAACACTTTTAGTAATTTATACTCGTTTTTAAAATTTCAAAATA TAATATATAAATAATTTTTTTTAATTTTTATTATATGGTTACTATGATGAGAAAAAGACTAGGATAGCAC CAAACCAAGTTTTTGTTCCCAAATTAGCACTCAAGGCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGA TAAATATACACTTATACCCTTGGGTTAATTAATCTAAACCTTAGGGTTTAGAGTTAAGGGGTGAGGTTTT GGAATTAGGGTTTAAAATTTTATAAAAAATAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTC AAAAAGTATTTTTAAATTATAAAAAAAAAATATGAAAAAAAAAATTTGAAAAATAAATTTTAAAAAAAAA ATTTCAAAAAAACAATTATAAAAATTTTTAATCTGAAAACATATAATCTGAAACTAAGAAAAAATTTCTT TTTTTTATTTTTATTTTATTTATTTTTGTTTATTTATTTAATTTTAAACAAAGGGTATTAGAGATATTTT ACCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAATG TGCTATTATTGACAATTGCCCTACTATGATTGTTTAATTGATTTTAATAGCTTAAAATTAAAAAAAAAAT ATAATAATAATACGCTCATATTTTTATCAAATATTTATTCTTCAAAATCATTAATTGTCATATATACTTT AGCCACAATAGGTAATTCCGTAATCTTATTTAAAGAAATAATGAAGCACATTAATAATGTATTTATTATG GTTTAATAAAAAGCTTATTATATATTTAGATGAACTAACATATTTCTCTAAGGATTCTAAGAATCATTCT AGTGATGACACGTGACTACAAAAAAGTGTTGCAATGCTTCTCAAATAATATATAGGGGATATACATTCAC GTTCGGTTTGAGTATTTCAGATTTTCAGGTATTTTGTGTCGAGTTCGGTTCGGTTGGATTTAACTTTTTG TATTTTTAAAACAAATTTATGAATAAAAAAATATGAATCAAATAGTAAATATATGTTGTAAGATAGAACA ATAGATATTTAAGCAAACAATAATAAAATAGGTTGTTAACCAAAAAACGACATAGTATATATGACCGAAG CAAACTGACCCATCTAGGGTCCAACAAAAAAATCTGAATCCGAAAAAACCGAACCGATCCAAAAAAAATA ATACTGAATCTGAACATAAATATTTTGGATATCTGTATGTATCCAAAAAAGATTTATATACCTAGATGTA TTAATTATTTTTAGATTTTATAAATTAAAAAATCTAAAATTTGAAGGATATTTTGAAATTGTTAAAAATA CCTGAAAATATATACAAATATCCCCTATATATTAATAGAGAAACATTTAAAAATTTATAACTTGCAGTTT GTACTAATCAAAAAAGTATCATGCTGAGTTGTCAAGTAATTGTAATGCTAATTTTGCTTACGTGGCGGCT TGAGAATCAATTGAGAATTTTGTTAGTCCAAAATTAAATTGCTAGAGAATCTTATATTATATAGTATGTC AATTATGGACCATTCATTTATGAAATTGAAATTGTTATATTTTATTTCATTAACTAAAACCGACGGAATT ACCTAATGTGATTAAGATATATATGATAATTAATGATTTTAAATAATAAAGATTTGCTAAAAATCAGTAT ACTTTATATCATTTATGTTTAATTATTTATTATTAAAATAAATTACACTATTACATTAATCATATAATAA AAGTTAGATTTTTTTTTTCTATATGTTGTATTTTGAATTTTTCAAAACGAGTATACATTACTAAAACTGT TATAAGTCTCATATAAACTTTTGTGATCAAGGTTTAAATTTTTATTATATAATAACATACAATGATTATA AAATCATATGAATAACTAATTTTAATAATTTTATTTTAATAGGTAGTTTATGTTAATATATATATATATA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCATATCGTTTA AGTTAAACTATACATCATATGAATATACATACTTATATTTTGATATGTGTTGAACATATATAAAAAGTTA ATATTTTAATTTTGACATCTTCATTGTTTCTTTTAAATGATTTTAAATTATTGAAACCACTAAACATTCC ACAGTAAAAAATCTCATTAGTGTATAATTTTGTTACAAAAATATGCAAATAATCATAAAATCATATGAGT AGAAACCTCATTTAATAAATATCCATATTAAAGTATATTATATCTATGTTAAAATATCATTTAAATTTAA TTATATATCATATACGATAGATATTGATTATTTTTATTTATTTACCTTAAAATGATTGCGAATAAACAAA AGCGGTCGTTTGATTTATATGTGCACGCCAATTTATTACATAATAGTAACTGATTTCTTAGTTATTTAAT ATAATTATTATTTTATTATTTCAAAATATGCAGAAAACCATAAAATAAGTAATAAATATTTATACTGCAC AAGGCGCGGATCTTGATCTAAGTATGTATCTCTTTAATAATTTTAAATCTTAAACATTTTCTAAATCTCA GGCCAAAACCAAAATAATTAAATGAGAATAAACTCAAAAATCAATATTTATATCGAGCAATAACCAAAAA AAAAAAAAAACGACACAAAATATGAAAAATATTGAAGATAGATAGGATTGTCACGTGAATGTAAACTTTT CATAACTATAATTAACTTTTAAGTTGCTAAATCATGATATAAAATCGAAATGACATAGTTTCATTGTAAA ATTTTTAGTCCCAAAAATCCGAATAGACCGGAACCGGCTACAGTTTGGTTTCCCGAACCAATTCAAATTT GAACAATATAATGGTCATTTAATATAAATAAAATAAAAAGAAACAATTAGTTATATCTCTTATTTATCTG GGAAAATCTCCCATATTTTAGTCTTAAATTATTACTGATAAAATTTAGCAGAATCTATTTTTTAACTGTA GTTTGCGATGAGCATGCTCAACTGGCAAAAAAAAAAAAAAATTACCTATCCGAATTATCATTCTTCCTAC TAAACTTAAATTTAATAGATTGGAGTCAGTTGATGACAAAAAAAAATGAAATCAGTTTGCAGACTAATAA AACAGATGAAGGTTGCAGCCGGGTTCTTTTAAGTCAGGAAAATCTTCCTATCACTTGGCTTTGCTGTTAT TGACATCGTCGTCAACATCCATGGCGTTACTGTTAATGTCGATGCCAACGTCCGCACTCATGTTCTTGTT CTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTACA AGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTTTATGGTTTATCACACAA CCAAACACAAATGCTTGTTATTGTGTATAATTACGAGATGAATTTACCAGAAGAGTGGTGAGGAATGAAG CAACTCTTCCTTGTGAAACTTGGAAAAAGCTTCACATGCCCATGGTATATGACCATCCGCCACAACCCTG TAACCAAAAACTCATTAATTTTACAAAATGTTCCATCATTCAGACATGCTACTGGTGGATATTACCAGAT CAATTATTCTTATAGTTGGCATAAATGTCGCATTAAACTTGTAAGAAAAGTAGTTTACCTTTGTTTTCTT ACAAAAGAGTTCCAAAGATGCATGAATCTCTTTTCGTTCTTATTCACATCCACGAAATCATCAAGCATCT GCAGCTTTGTTTTAAGTATTTCATAATCCATTTACCACGTTACATCAATATACCATGTATTAATGAACGC AGAAAGAAATCATGGTAATACCTGGCGATCTTCCAGATCTGCAACGTCATCATCCACTTCATCTTCGCTA TCTCGATCAGACATTACTTGCTCAAGTGACATTGGCTTTATCACACAAACCCATGTAGTTTTTTTTGGTT AGTGACAGTAAAACCGTGACAACAACATGGAGATAGCATTATTAAGTCTGTTAAAGAGCTTATTGAATCA CCTGAACTCTGTGAGAATGATAGAACTGGCGTTTCTGAAGAAGTAGGTTGCTGGAAGAAAAAATTCTCGA GTCAATACGGAAGTAGAGTTCATAATAAGGAAGAACAATTTGGAACAAGATAACAAACCTTCTAGCCTCT GATCGCTCAGCAGATAACTTTCTTGACTTAGCAGCCGAGACCACAGCTTCGCTTGCTAACACAGCTTTGG CATTCGAGTCCAGCGAACATTGAGCTATGGCTGGTGAAGAATTGTTCATCCCAAATTGTGTTGCCACGGG ATATCCTAAACTATGGTTTCCTGTAGAATGCCATTCATTTATGTACATAAGTCATGGTAAATATTTTGAA AAGAATCAGAGGACAAGTACATTAACAGAATAATCAAGACACCCACATGAGAAGAAGAGAGTTTACCATT ACTCAGTAGGGAGGTTCCATTATCAGTGCCATTGGCTAAACTAGGTGAATCCATGGGTAAAAAGGTTACG TTTAGTCGCCTGGCGTTATTTTTACCACCTCTTTGTCTACGCTTACGAGGTTTCGAGCTGCAGAACATTA TTGGTTGGGGTTAGTTAATAGAGATGTTCTGACAAGGAGTTGCTGCTATTATTAATGTATATATATTTAA CTTATTAAGGTAGGCTTGTGAAAGTTACCAAAAAGAGATAAGCTCATATTTCTCTTGATGGTTGACTTCT TCCTGGTACAAAGAAGGAATGAATATCAACTACAATTTCTACCAGCTCCCAAGTTAACCAAGTTTAAAGT AACTGACCTCTGATTCGAATGCATCAAGTCTTACAGAGACATTAACTGTCTGGTAATCATCTTCTGAAAG CTACAATAGGAAAAGATGTTTGTTGTAACTAGAATTTCATAGCAAAACAAGAGAGTTGGAATAAAAAAAA ACAACATACCATGAACTCAAATTCAAACAAGTCATGGAACGAATTCAAATGAAGTTGCAGCCCCTGCGCA GACAAAATAACAATGGACTGTAAGCTCAATCAATCAGATAACCATTTATAGAGAGCGAGAAGATAAAGGA AACACATACCTTGAAGCTAACACATGTCATATAGCAAAATGGACAAGAACAATTCTCCGTCACTGCGTGA AAAAATTCAGGAAATAAAAACAAAAGTAGAGAGAAATAGACATGAGAGAACATAATAAAACACACACACA CACACACCTTCAGTTTTCTGCAATGTGTTATTACAATCCTTATAATTAAAAACTACAATCCCAGCAGATC CGGACCTAAAGAGAAGAAGCCATTCATGAGTTTCCATAATTAGACCCGAGAAAAGGAGGATTAAAGAATC ATTACTTTGTTTTGCCCTTTGCACGAATATTGTAACTCAAGCATCTAGGAAGAAACGATGGCTGCACAAA GAAAGAAACAAAAGTTAAAGAGGATCACAGTCAAGCCATGAAGCAGTATCATCAGCAGAGCTAAAAGAAA ATGATTTACGTTGAAAAGGGAGCGAATGCGAAGAATGTTGTAGAGACGAACAGGTTTACAGTAGATCAAG AGATTCTCATCAGGTGGTGAAACCACCTCCTCCTCTTGTGACGATTTCGCGCAACAATTATGCCTACACA TTCTCTCTCCTCTACTCAATTAGCTGCTAGATCTCTTAATCTTCTGCAATTAGGATTATTAATTGAAATC AAAATTAAACAGATCCGGAGTTGAACCTAAAAAGAAGAAAGTGAAATCAAGAGCTGAATTAGCTAACATG GGAAGCTCTGGAACCTGATCGGAGAGGCTCGATGTGCCGGAGAAGAAGGAGAGAGGATGAGGCGTAGATG CAAGCCACTGAGTCATCGCCACGCCATCTTCTCTTTCTCCTTTTCTACTTTCTTTTCCTTTTTTTATTTA TTTATTTTGCTAATTTTTGTTTCTTTTGTAAGCAATTATATAATTTACATTTAAAAAAAAAAACTGAAAT CTAACGCTTTACAATAATAAAAGTTGAAAACATGATAAACAACAACATTTGAAAGTTGAAATCCAAAGGG CAGTTTCGTTTTGAGAGGTGTTACATTATTAATTGATTGTTATTATTCACCAAAACAACTCCCAGTTCAC ATAAATATATGTTCACAACTAGCCTATTTCTCTGATAAACAACACTTTTAGACAATCATAAAAGATGTTC TTAAATTCTCGTACGTAATTAGTTAACTTTAAACTGAACATCAGAATAACAAATATCATAAATTATGGTA CATAATTAGTTAACTTAAATTGATTAATACTTTCAATTAGACAATCCATATAGAAGATATATATATATAT ATATATATATATACATATAGAAGATATATATATATATATAGAAAAATTAAATCTGAAATTTAAATGAGTG AATTCGAAACATACTGTATTAATAAGATGATAATAATGAAAGAGAAAAAGACTAAAATAGCACTAAACCA AGTTTATGTTCCCAAAGTAGCACTCAAAGCTTAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATAT ACACTTATACCCCTTGGGTTAATTAATCCAAACATTAGGGTTTAGAGTTAAGTGATGGGTTTTTGGAATT AGGGTTTAAAATTTTATAAAAAAAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTCAAAAAGT ATTTTTAAATATAAAAAGAAAATTTGAAAAAAAAAATTAAAAAAAAAAAATTTTGAAAAAAAAAATTATA AAAATTTCGAATCTGAAAACATATAATCTGAAACTATAAAAAAAAATTCTTTTTTTCATTTTTTTATTTT TATTTTATTTATTTTTATTTATTTTTGTTTGTTTATTTAATTTTAAACCAAGGGTATTATGGATATTTTA CCCTTTAATGAATGTTATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAAGG TGCTATTATTGACAATTGCCCATATTGAAAACGATAAAACATTCAAAAGAATGTATATGAAGAAAAACTA AACTCTAATCTAAACCCTAAATTAGAATAAGGAAGTACAAACATATTTAAACGATAAACCAATAGCAAAA ATTTAGTGAATCCAAACTGATTAAAGTACAATAGGAGGGGTCCACAAAAATGATAGGACTAAATTAGCTA ACACTGAGAAGCTGTTGGGCTTTAATAAGATTTGCTGGGCTTTAGCTTTTTATCACCTGTAAATAAAAGA AAAGTTAGTAAAAGACTGAACTATCTCTGCTCAGCCGCCACTGCAAAAAAAAATGCCACCTATTATTATC TTCTCATTCATTACATTTCTCTCACCAACTTAAGTTCCTGTCCTAAATACCATTTGGTCTTTTTTTTCTT TTACTCCTCTAGATCTGTACTGTCCGTTGATTCATCATGGCTTCACATAATTACTAGTTCTGTTCTGTCT GTGTGATAATTTTGGTAAGGAAAGAAAAAACGAGGGCTGTAATCAATTCGATTGATTTGAAGATATGGCA ACTTTGAACCCTTTTGATCTGTTGGGTGACGACGCAGAGGATCCGAGCCAGATCGCCGTCTCCATCTCTG CTGATAAGCCCAAGAAACCTGCACCTGTTTCCGCTAAGTCATCTGCTCCGTCGAGGCAGCTTCCTCAACC TGGTGAGATTCGCTTCACACGATTAGCAAGTTATTAAACTTTCGTCTCTATTTGATTCCATCCGTGGTAT CTGATTGTTGTTTTTTAAATGATGTTGATTAGTGAGGGAGGCTAGGAGTGATGCTCCACGCGGCGGTGGA CGTGGTGGTGGTGGAGACCGAGGATCTAGCCGTGGTCGTGGTGGTTACAACCGTGATTTTAGAGGCGGTG ATGGTAACAGTGGAGGATACAATAAGCCCTCTGAGGAAGGAGGGGTTTCAAAGCCTTTCTTTGAGAAACG TAGTGTATATGGCGGTGCTCCTCGTGGTGGTGGTCGACGTGGTGAAGCTGGTGAAGGTGAACGTCCTCGA AGGACATTCGAGCGTCGTAGTGGAACTGGCCGAGGGTCTGTCCTAACCTCAGTCAGTTTTTGTTGTTGTT GTTGATACATTAGTCTCTTTTAAGGTTAAGCTTTATGTTTTTTGGTGAAGGGGTGACTTCAAAAGGGAAG GAGCTGGTCGTGGAAATTGGGGAACACCAGGAGAAGAAGTTCTTGTTGTGTAAGCATTTCTGATGTTTTA TTATGATAGTAGTGCTTGTGAATTTGGAATAAAAAAAAGAAGCTATTTGTCTCTTATAGGGAGACTGAAG AAGTTGCTGGTGCTGAGATTGAGAAGCCTGCTGGTGATGAGGTTGTTGCTGATGCTAAGAAGGAGAACGC TGCTGAAGTCGAGGAGCAGAAAGAGCCTGAAGATAAGGTAAGCAGAGGAATTAAGAGAGATGTTAAGTTG CTATAATAGGACATGGAACTGAACTTACACTTGTCGCTTTTTTTTTTTTTTTTTTTTTAAATTCTCATTA TTATGGCTTGTGCTTCTGTAGGAGATGACTCTGGATGAGTATGAGAAAATACTCGAGGAAAAGAAAAAGT CTCTTCAGTCTCAGACCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATCAATGCAACAACTCTC AAACAAGAAGAAGTCTAACGATGAAATCTTCATCAAGCTGGTAAGACATATTACCTCCCTGTCTTGTCGA CTAGAAACACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAAC GCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGTAGAA GCCTAATAAGTTTACCTATGGATGTGTTCTATGTTTTGCAGGCTGTGAGCATTAATGAGTTTCTGAAACC AGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGAAGGGGACGTGGTGGTCGT GACCGTGGAGTTGTTTCTGGTGGTGGATTTGATGGTTACCGTAGTGAAGCTGCGCCTGCCATCGGAGATA CTGCTCAGTTCCCATCTCTTGGGGGAAAGTAAGATCCAACCTTGGACACTCCTGCTGTCTCCTTCAGTTT TCCTCATCATGACTGAAGTGTTTCATGCTGAGTGTTTGCTGGTCTGTTGTTGTCAGGTGTAAATTGTTAG TTGTTGTCAGTTTTTAGAGTTTCTGAAAACTTATGCCTGACCGGTCTTTTTTTTTTAACGTTTGGAACAA TAATACCCTTTTCTATTTTGGTTTTACCACTTAGTCTTTATAGTTGTTTGTGAAAAGACAGACAGTTCTA ATGTTATATGCTTTGGGTCTTCTTTGGGTTCACTCTATTTGCTCTTACATATGTTACAAGATCTATAATA CTTTGATCTCTTGGAATGCCATGATCTCTGGTTACGGGAATTTGGAAATGGCATCAGGTTTCTTCCAAAC GGCTCTGGTTAGAGGCGTCCGTGGGTCGGTGATTATCACAAGGTACATGAAAGGAAATAAGGTTAAATTA GCTGAAGTCTTCAAAGACAAATCTGGTAACTTGGAATGCATCAGTTATGTCTGAAATTTTCTCGGCCAGA AGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAG TGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAACAATATAAA ACTTTGTCAGATCAGTATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTC AAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTGACGGAAGTGCTAGTAGCCTTCCGCTGC TCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAGAGTTGAAAACAC TTTTCTTTCTTTAAAAGAAAAAAAGAAGAAGAAGAAGATAGATAGTGTGGCCTATGATATGGATCTTTGT TACGGTTTTACTGGACTGTAACCATGCTGGACTAGTGTTCAAAAACCTGATAAATTAATCTAATAGTGAT TGCCATATAGTAATCAATTGTATCACGATCAGAGAAAGAGAGACGAGAGATCATAGTGAAAGACACCACA TGGTTTCACCATTTCATAGATGGGTGTTGCTCTTGTGTCGGTTACTTGTTATTATTAAAAAAAAAAAAGG AGAAGAGCGTTGACTCTCTACTGGACAAATCTGACGTGACGAGACGAGAGTATTTAAATGCGTTCATGTG CGTTAAAAAGTTTCGACACTTTTGACTTGACAAGTTGCGTTTAAGGAGAGGAAGATGCGTAGATCCGCGA GTGGCTCAAGAGTTTCAGATCAATTTTCCCAGGCGAAGCCGTCACACTCACGGTCTATGAGTCGATCTCA GAGTGTTAGACTTGTTGAAGATGCCGAGCTGCATTTGCCAAGGTACGACCCGAGCTCTCAATCGGGTAAG AGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCT GTGTTATAATCCTCTGGCTCTTCTCTCGTTCAGGTAAACCATTCGTGCTTGGTTTAATTGGTTCGATGTG ATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCTTTTAAGGAGTCGA GGTTGAAGAAGCTAAAGGCTGTTACTTGTTTCCTTTGGGAAAGAACCAACTTTTTACTGCCAGGACTGGC GCCACGCAAATGTTTTTTTCCTTTCTTTTTTTGAATTTTGTTTTTTCTTTTCGACAAACCAGCCTTCATT TATATAACATTATTTTGTTATAAATGTGAAATTTCACTATGTAATACTATTTCTACGTCAATACTCAAAT ATTGTAAGACATACAAACTCATTTTCAGCGAATCACTAATCTAAAGTTTGTATGTCTTACAATTTTTTAT TAATTGAGCATTTCATAAAATTGTTATATGGATTCGTGTTTTAATTAAATTAAATTAAATCAAAGAGAAT AAAGTTTTTTATTATCTTATGATTCCCTATGCTATAAGACACACTTTCTGTAGAACACCTCCACTAAAAG GTTTTTAACCAAAGTATCTCAGAAAAATATCTATAGAAAAAATGACTGAGATACAGGTTCTGCATAAAGA ATTTCCAAAATCTTTTTAGAAACCCACAAAACAAATGTTACTTTCTTTTAAATACTTTAAATTTAACTAG TTAATAAAATAAAATTTAAAATAATAGTACTTTGTTATTTAGATACTCATATTGAGTATACTCAAATAAT AGTACTTTATTAGAGATGGGTAAACAAGCCGAACTTGAAAACCCGAACAGAATTCGATCCTATAAAAAAT GAATCCGAACTGATTCGAACCCGACATAAATATCAAATATATCTTGTTTTATGGTATTTCGGATTATGGG TGTTATCCAAACCGAACCCGAATACCCGATAAAACCCGAAACATTCAAAATCCCAAAAAAAAACTTGTAC CAAACATGATTTCAATTCATAATATGTATCTAAGTACACTCAAATATTATTGAACATCTAAAATAATTAT ATATTACATGAAAGTTGATGGCTGAAGGTGATGGTTAAAGTTTGAAGATTTTTTAGACTTTGTTTTTATC ATAACTTGGTTTTCGTTTTATGCTAACCCAACCCGAATCTGAACCGGTTCGAACCAAAATTTTGTATAAT CCGAATGAAACTAATTTTGATATATCCAAAAAATTGAGATTCTATTGGATAAAACCGAAATCTGATTGGG ACCCAGTTATAGGTTGTGCCATTGGGGTTGTTCTTTAATAAAGAAAAATATTATGATTTTTTTTTTGTCA ACCGAAAACTATTATGATTAATATAATACGTTTGGGGTAAAAGAAAAAAATAAATAAATAATATTTCAAT TTGGTGACCAAAAAGGAAATAAATTGGGATCTAAATCAAATCCAGCAAAGAGTTACTACTTACATATAAA GTGGTTAAACTTGAAATCTATCCTTCCAAGAAATCTTCCAGGTTTGTCTGGAATCTTAGATTAGATCGTA ATCAAGTCAACCGTATTGATAAACCTGTGATTTAATCTGACAAGAAAGCACCAATTCCTACTCATATTAG ATTTCAGAGTTCAAACAAATATCGACTCAGTTTTGAAGACAATCATGGCTGAAGTAAAGCGACCTGGTTT CTTCTTCTTCTCACACCAGGGCCTAAACCCATCTCTGAAGTCATCTTTTGCTTCAGTGAAGTCCTCGTGG ATGCGAGTAACATTAACTTCCATTGTTGTCTACGGTCTCCTCTTCCTCTACTCACCAGTTCCCATGTTTA TTTCTATCAGCTCTCTTCGGTTACACACCTACACTGCGTCACCTCATCAGAGTTCTCTGTCTCGGCATTG AGATCGTATACATAATGGCTATAACAGGGCTTGGCCTTGTCGTCTCTGTAGTAGAAGAAAGATACGGTTA AAGAAGGAGCGGCTCTGATGAAAGGGAGGAGGATAACAGGATTGGCTTGAGAGATGTCAATCAAAGTCCC ACATTGGATAATTAGACAAGGAGTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTT TGGGAAGGAAACCAAAAGTAAATCCATGCGGGCTAGCCTCCTAGGCCCAAAGTGGACAATATCGTACTAA TAAGATAAGATAGAGTTGGACACGGGATTTCGCAATCCCAACAATTGGTATCAGAGCGGTTGACGAGAAA TCTGCAAGAAGACCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAG AAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTA AGGGTGTCGAATGTCGAAGATGCGACAAGGCACCGAGATGATTCGCTAGAGGAAAAAGGGCACAAGGTGT GTGGTCCTTAGCTTGAGGGGGAGAATGAGAGATGTCAATCAAAGTCCCACATTGGATAATTAGACAAGGA GTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTTTGGGAAGGAAACCAAAAGTAAA TCCATGCGGGCCAGCCTCTAAGGCCCAAAGTGGACAATATCGTACTAATAAGATAAGATAGAGTTGGACA CGGGATTTCACAATCCCAACATGGCTTTGGCGGGTGTGTTGGTGTTTCTGTCGAGTTTCATTGGTCATGG GATGGAGAAGCTGGCGAAGGAGACTGGTTTGATAACAAGGAGAAAGTGGAAGGTTCAACGATGCTCCTTT GCCATGAAAGTTGCTAGAAGAAACTGATGACGACGGTATCTTCCTACTTCTAAAAGAACCCTGTGCAGAA GCTTCTCCCTCCCCTAATGAAAGATCCAGACCTGGAGCCGTCAATTATGCGTTTTCTTCTGTTCTTTGGC TACAGAGTAAGTGGGAAGATTCTTCAGATGTTCTTACTGTCATCTGCATTAAAAATGAAAAGATCGAAAA AGGAATAAAGGGGTAGCTTTGTAATTTACTGATCAGTTTAAACTTAAGCTTACCCGCATTCGCCTCTTGC TTCTCTCAGTCGCTTCATCACATCTCCATTGTTTTCACTTTCAGCTCCACCTGGTGATGGAGAGAGATTC AAGACTCTTACACCACATCCTTTTATCCTCTCCAGAGACAAGGGACAAGTTTGCGTGTACCGTTCAAGCC AGGCCCAAATCTCACGCAAGAACAGGCATAGTTATGGAGGAAAAACTCAAACTCCACATGGTTGTAGCCT AGTTTAGATGGAGGACTATAGACTTCTCCTAGCGGGAACCCGAAGTGGAACATAACCAGATGATCCATCT TACATGAGTCCACGTCAAGGTAGAAATAATGCACGCCGCTTTTGCCTCCGACGTACCAGCGCACCCCGAT GTTTACAGAACGATCCTTGGGGTCAGTTGGGGGTTCAAGAATGATGCAAGCCTTGAATCCCCAAATCTTT TGAGAAAGAGAGCTCTGAGGTAAAGAGATAACTAGGTTACTTCCACCAGCTCGATGCATGAAATATGTTG GCACTTCTCTACCGGGTGAGATGGCATAGTCGAAATCTGATTGCAGAATGAGTTCCCGCGCATTTTCATC CATATTGAAGCAGTTATAGAATTCAAGACGACTCATTGGATTGACGAAGGGGTGAGATAAAACCCGGAGA GATTCACAATTCTTTGCACAAGCTTACTACCTGGGATTATGAGTTCAACGAGATATTCTGCGCAGAAATC AGAAGGCATATATCTCATAGGACAGTCACTCCAAACAAGTTCAGTGAGCCTAGAAATAATGCCAATGAAG AAACAGTCTTCGTCTTCTACTATGGAAGTTCCACCTAGTAAGAGCCTTGAAATGTTACTTGAAATCCGAG GGAAACTTCTCAACCTTGCGCATCCAGTGAGATTAAGATAGTGGAGAGATGCCAAGTTGACATCTGACGG AAGAAACTCGAGTCTTATACATCCACTCATGCGCAACACCTTGATTTCATTTAGATTACGAATTCATGAG GATGGAAGAAAAACCAAGCTTTTGCAATCGTTGAGTTCCAATCTCTGGAGTTTGGTGGCCTCTGAAAGAT CTGGAATTTCTTTCAGGTTTTCGCATCCTGACAAATCCATATACACTAGATCTTTAAGCAGCTGGAAACA GAAATGAAAGATGCATTAGTTGATGTTGAATGTGAAGAAAAAAAGGGAAATATATGAATGAAGTAGTTTT AGTAATCTCAACCCAAGCCAATCCTAGGTAGAGTCTTTCGTAAATCTTCCCATTTATATTCGCTTAGCCT AAGCCTAACCACCCCATCAAACTTTATTGGGAATTTGTGACACTAGCCAATCAGGAGATGCAATAGCAAC ATGAAAAAAGACCAATAGTTCCTCCTCCTATGCACAAAAACATTAGTAATGAAGATTAAGAGACCGTTAC CTGTTTGCTCAAAAACAAAAACAAAAACAAAAACAAAAAAGAGACCGTTACCTGAATTCCTTCCCACAAC ACCTTTGCCAATTTCGTCGGTCCCATCGTAATCTCTCGCTTCTCTCCCCTTGTAACCTAAGATATTTTAA AAATCTATCAAATAAGAAAAGTTTAGGTTAATGTAACTAATAAAAAGCCATATTTCATATTATCTTCTTC ACTGCAAGTAAATTCAGGAATCAGACAAATGCTAATCAACTCATTCTCAAGCAGAACATACTTAAAACTT CACTTCGATTGATTAAATATTCACTCTTCATATCAAGGGACCAAAAAAGCTAACGCAAAAGCAGGTATAA GACTAACCTAGACTCAAATCACCGATCTCATCAAGTGTTATTTAAATTATTTTGTTATTTAAATTAATTT TGTCATATGAGAAAATTGCTTGATATAAAAATAGATTTATTAATTTAAAATTTATATTATTGTATTTAAG ATAATTATTAATCAGCATTCTATGAACTTTCCCTTTTTTATAAATCATATTATGTATAATGTATAATTTG TTTTTAAATTTAATAATTGTTTCCTATAATAAATGTTTATATATATGTTATTTGAAAAGAATATAAAGAA ATAAGGTTTAATAATGACGATTAGATATAATATTTTGAAGTAATTGTGAGTACCATTATAATTAACCGTC ATAAAAATTAAAATGATATGGAGAAGTACGAAAAACCAGAAAATAAATTAATCCATAATTGAAAAACCGT ATGCCCAAACCTAGATATTCTGATTAGTGATTACAATAAGATATCAAACTTAATTCAAGTGTTGTCCTAT CCTTACTTCACCTAATTTTATAGACTTATAATGAGTTAGGATTTAAGAGAATACATTTGATCAAGCATTC AAGTGTAATAACGGTCGCAATTCATGAATCGACTAAATGTACAAGCTTCGTCGATTAAAATTCAAATCAC TTTTATGCAAATATGAGATGATCGAGAGTATATATGGAACATGTGCGTTGTTGTGATGGTCTAATGTAAG AAGATGGTTAAATAGTAAATGAGGGCCACAGAGTACTGGTGTGAGACAAAGAAAATAGTATGGGGACAAC CATAAATGGCGGTTTGTGAGTGCGAACATAATATTTGGCCGTGGAGTTTATTAAGATGCGTTACCTAATA CAACACGTATGGTCCCTTTTTGTTGTTTGTTTTGTAACCTAGCATTATGGTATTTTATCCTTTTCTACTA GATTTTTGTAATGGCCAGATCCAGATGGCTGATTCATTAATTTTGGAAGACTCAAATGACTTGTGTTTTT TTTTTTTTAACTCAAATGACTCGTTTAGTGACTTTCTAATTAGTTAGTGCTGTTCTTGTGTTTTTCTTTC ATTCGTATGCGGTATGACGTTAAATATTATTTCTGATATATCATTCACCCTTAAATTATACTAAATCAAA CATATTTCACTTTAGAAATTTTTTAACTGATTAAAACGATAAATGCATTTTAATGATATTATATATAGAC AAATCGTTTTGTAAAGCTCTCTACATGCTCCACTCCACCATTTTCGTATTATGATATTATAGGATATATA TATATATAATTATATATATATTGACTTGACTTGGTTATAATATAGTCTAACCCAAAATATATATATATGA ACATCGTTCTACTATATTAATGGCTAACAAACATCATTAATGTCCTTGCTAATAATTTTGATGGTCCCTT AAAACCAACCCGTGAATCGGATTGAATCAAAAATATAAAGAATCAAAATAAAAGACACCATAACAATAAT AACCCCGTTTCCATGTCTATTGATTATTCTACCTGTACTTACAAAGAGATATGTGGAGGAAAATAAATCA GCATCTCATGCCTATCCATCGACTGATACGTTTCACACTATATATCCAACGGTCAAAATTTTTAAAACAA ATAAACTCTAATATATATATATATATATATCCCCAATAGCACAAAGAACCTTCACTTTTCTCTCCCATTC TTTTACAACTCACATTGCACATCCTTTTTCTCTATATATTACTTAACATAAACCACTATTCACAACACAA ATACACACATAACCATGGCCTCTTCACAAGCTTTCCTTTTGCTCACATTGTCTATGGTTTTAGTTCATTT CTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGCGGC TCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACCACCTATGCCAATGATGGCTC CACCACCTATGGCTATGGCTCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCC AATGGCTCCATCTTCAAGTCCAATGAGCCCACCAACTACTATGGCCCCAAGTCCAGAAACAGTCCCTGAT ATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGG CCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCA TTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAGCGTCGTGTTTGTGTAATTTACTTTCATTTTTTC TCGAGCCATTAGTTTTCATGTTTTATCATATATTTGGGTTTGTGTTTGATATGGTACGATTCAGACATTT GTTTGCTTAATAAGTTTATCGTTGACTCTATTTGATGCATGTGATGTAAATTCATTTTTATCCAAATTTT CACAGACGAACTATCAATAACCAGTATTATCAATATATATCTCGTTGTTAGTTGGATGATATCAAATTAT CAATGCATATGGTGGTTCACAAGAAAAGGAAAAAAAAGAGATAAATGTGTATATATTTAACAAGCTTGAG GTAACTATTTGTAGCAAATAAAATAAAATACGTTAGTGAGAAATGTTATCTTTCTAGAACGAATACGAAT AAAGCAAAAAGCTAAAATTGCAAGCTGTGTGTCATAAGAATCGCATATGTAAAGAAAAAGAGGTCGCCAT CTTGGATTTTTCTATAGAATAAATTATTTTTAATTCTGTGTAGGTTACATTTATTTTAAAAAATAAAAAA TAAAAAAAACATTTATTTTTTTTATTTTTTTGAGCAAGGTTACATTTATTTTATTTCATGGAATAATACA TGTACAAGATTTGAATTTGTAAGAAAATTAAGAAAATTCAAAAAAAGAATGGGAAGAATATGAAAGAGGT AGTGAATAACAATTGTAGGGAATAGGGATAAAGCAGGACTCGAGAGGACAGCTAAAAAGAAAGAGACGTT CACATGACTGTCTTTTTCATTTGCCCCCACCATTTTCCAATGTGTATTATTAGAAATCATAACGCAGTTT AATTGTCTTTAAGTCATGTTAGTTATTTATCTAAAGCCATGTGGTGCATAGGTGCTATGTTTAAATCATT TTTTGAATGAATGTTAACTTTATTCATCAAAAAGCCATGTGGTACATAGGTGCTATGGTTTTTACTGTTA TAAGCTATACAAAAGGATACCGTCTGCTACCAAACCAACATAAAAGAATGTTTCCAAATCTATTATTATC GGATTGCGTCAATAATCTGAGATGATTTCAAACATTCTTGTCAATCATTTTTGCCAAGGTTTGATGAGGC GTAGGCGTAGGACCACAAGCCTCAGATTTTTTGGGTTAGTAAAAATATAAATGTAGATACATCATCAACC TACGGCGTGTTGTTTGTTAGCTATGGACTGTCAAATGTGTACAACATATTTGTAGGATTTGAGATTGGTG TTGTTTACAAGCCCTGCAAGTGAGAACACGGATGTGGCTGGGATGTTCTTGGGGAAGTCCAGCCATGAAG AAGAGATGCATACCGTGGTTTGCAAGCAAATAGCTTGTACATTCTATCAGCTACATTATGTTGCAGTACA TGTTCTCTTTGTCGATGAAGTTTCTGTGATGGTAACACACATCAGTACATGTTTTTTCCAGCCCCAAATT CTCTCTCAACTCATTAATACTACTAACAATAATTGACCAGTCTGTAAAAATTAGCAAGTGTTTTTATACA ACAGTAAAAACAAACAAACTCGCTTCTGTTACTTCTCAAAGATCAACCCAAATTACAAGACACTCTCGTG TGAGAACTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACA TGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAAGCAGCAGCACAAA CAGAAGGTTTTTTGACGACGACTGCAGCTTCCTTAGATTCTCCATTGATCATCGAGGTTACAACTCTTTT GATCCCACTTGCTTCTTTGTACCTGAGGCAACCCTGAGGAAATGCATAAAATTATCAGATCACATGCTGA TATTAAGGTAACAGTTGTTTATATGTGGAAAACAAGCGTGGTTCTCTCAAGTGAGACACTGCAACTACTT TGTTTTCTGATTAAAAAAAAAAACAGTTTTCTACCTCTTGCAGTTCACCATATCTTCAGAGGCATCGTGT CTAACAAGTGTTTTTGTGGATGTTCCTCTTAAATATTTTGACCTGGAAGTTGTGTTCTTCTCAAGCTGCA GTTGAAATTAGTATGTCACATAAAGAAAGAAAAAAGCCCCACGATGACCATACATGGATATGAGAGAACT TACTGGAGCTGGCTCTTGTTTTGGACCCAAGATTTCACCATGGAAGCCAAGAATGTTGGTAGTTTCTTCT TCTTTCCTTAAAAAACATGAAATTATTCTTCCCTCAGAAGAAAAGAACAAACAAGAGTTGCATACTACTA GTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATACTTGA CGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTAAC AAGTACATGAGCAACACATGATAGATAGATACATAGGAGAAACACAAAGTATACACAAAGAAACTGAGAT ACCCTTTGAGTGGTTTTGCAAGTTTCTTTATTGCCAAAGACATTGTTCTTCAACAGGGGGTAGGTTGCTG CTTGGTCGACATTCCTGTGAAATTCAGACAAAACAAAGTATATCTGGTGAGGTGGTAGGAAAAAAAAAGA ATAACTGAAGCAAATAAACAATATTTTCCACACCTGTTATTCTTAAAGGCTGAAGAATTTTCTTTGTCAT TGCTTCCTTCGTCTGCTTTGATGTATCCTTTATTACAGCAGGATCTTCTCCGGCCTGGAGTTGATCGTCT ATATTTCTCTTCAGTTTAACCAGCTTCTTTGGGGAATGAAACACCAAAAGCCTTTGCAACAACTCCTAAA CCCTGCTGGACTCTTCTTATGCCTCAGTTAATTCCTTGTGATGACTTTGGAGTTGCATTCTTGTTTGTGG GAACTGCTTTCACTTCTCTTGGCCTCAACTTACCACCATAAGCTTTGTGAGGAAGTGATGAGATCATAGC CAATCTAGAAACTCGTGATCTTGAAGGTTACCGTGTTGGGGAATTTGGGAGGATCCTCACTGTAATAACA AAAGCATGTAGAACATGTAACGTTAAACACACACTACAGTGACAAAAAGATAAAACACAAGTCTCATAGT TTGACTTTCATGTAACCTCAAGTCCTTTCTGTAAAAAGCTTTACGAAGAAGACGAACACTAGGACTCCTA GCTGCCATGACCTAGGTAATGTTCATCAAACTCAAAAGTCTTAATCTTGAGAGATGACCCGAAGACCGAA TCACTGTGCTTCTGATCACATCCTAATTACACATTATCACCAGTCGGGATTAAATCAAGGGAGATTAATC CATATGCCCTCTACCCTCCAAAAAAATCCCCATTTATCCCTTTATTATAATATAATTTCTTTTTCATTTT TTTTTAAATAGAAAACGTGGCTAAAGACAGATTGCCCTAAACTAATTTAGTTATTTACAAGATCCAACCA GAAAGATCCGACCCATACAATACAAACCCTAAAACCCGACCCATCTAAACCAAAACGATGTCGTTTTGTA TCACTCAACATTCTCTTCTCCAAAATTTTCAATCATCGGGTCTGTCTCTCCTCATGCGACACTCTCTATT GCAAAATCGGAGATTGAAACCCTAGAGTATCTATTTTCGTTCTTCCTTGTTTGTTTTCTATCTAAATCGA AAATCCATCTTCCTTCTTCCTTGTTGGTTCGTGTCTCAACTATCTCTTTGTCTCTCTTGTCTGAAACCCT AAAGTCGAGACCGCTTCGTTTCTTCATCCTCCTTTGTCGAAATCGAGGCTCCATCTTTGTTCCTTGTGGT AAGTGATTAGTTTCCCTTTATTTGGTTGTTATTTGGTCGAATTTGTATGTAGATTTGAAAACAAATTTGG GGAAAACTTTGAATGTGTCTTATGTTTAGATATTGGTTTTGAAATTGGATAAGAACTTGGTAAATCTATT GTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTTTGTTAA TAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTGAG TGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTC AGTCTCTTAGAGTCAGGAAACCGGACTCGGCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAA AAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTC TCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGT ATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACT AGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTAC TTCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGC TCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCC AGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGAT GATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTG GGTTAGACTGCGGTGATTATCCACCAAACTATGAGAAGTTGGGAGGTTATAAGTTTGTGGATTATTACTT CCATGACAGAAAGAAGATCACCATCACTGATGTGAAGCAGAAGATGTTGTCTATGCCGCCGTGTCCAGAT AGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATT TAGACGACTTCATATTAAGGATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAAC GTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGC GCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGCATATAGTTTAGAAAAATTTTAATTGTTTTATAA TTCAAATTTGACACTGTGACAATGGATTTTCTAGGTTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAG ACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGT CCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTGTTGGAGAAACAAAGGTACATGTATAAAT GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACA GTGTCTTAGTTCCAACTATTGGTGAGCAAATTATGCTGGCTCGTATCATTGATGAGGAGCGAGAGTATGA CCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAAGAATATTTGGTGGGAA GAGCTATATGAGTTGGATCAAGCTGCACGAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGT TTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTGGAAGAGAGGATTTTGGA GTTCATGGGAGAAAGATTTGCTGGACTTCACGTCACGGTGGAGACAATGTTAGAGGCTCAAAGCTCAAGG ATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT CTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGATACATA TGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGAGGCTGGAAAAGAAAAG GATAACATCGAGAATACTGAGGAAGAGGGTGAGAAAGAGGCTGATGACAATGCTCAGCAAGAGGGTGAGA AAGAGAAGGAAAATAGTGAGGCTGATGAGGAAGAAGACAGTGAGAGTGAAAGTGAAGAGTTGAAGCAAAT GAAGGAGAGAAGTAGAAGACAAGCTGCTAAATTGTGGAAGGAAATTGCGAATGAGGAAAAGATTGGAGGG AAACATGATGAAGAAGAAAGTGAAGAGAAAGAAGCTGAAACCAGTGAGGAAAAGGATGAGAACAATGATG AGAAAGATGAAGAAAAAGTGGTGGAATCTGAGGCTGAAGGAGAAGATGATCAAGTAGAGGTTGGAGGGAA AGAGGATCAAGAAGAAGAAGTTGAAGGAAAGGAGTCTGAAACCAGGGAGAAAGAAAAGGAGAAAAATGAG ACTGAGGAGGTGGAATCTGAAGCACGGGAGACAGAGATAGAAAAAGGAACTCCGACACCACCACGTGGGA ATCAGACAGAGAGAACTCCCAAAGATGATGACAATGAGCCTCGGGTTGAGCCTCGGGTTGAGACGAACAG AACCGGTGAAACTCCAACACCACCACATGGGAGTCAGTCAGAGGGAACTCCCAAAGTTGATGACACTGAG CCTCGGGTTGAGACAAACAGAACCGGCATATCTATCAGTTTCATCATCCTCTTCTGAAAGTTGCACTTCT TCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGATAACCAAAAA CGTCTTCATCATTCCAGATGTATGATGGCTTGTACGAATACAATACCATTGGAAAGTAACTAATCTTCAC TTGCACCTTAGATTCATCTACCCTTATCTTTCTGCAAATACGCTCAACCAAAGCATAGTAAGTGATATCT TCCATTGATTTCCTCAACACAATCGTGTGGATTTCATCTTCTCCTTCACCACCTCCTGAGATCCATTTTA TTTCAGCCCCATCTTTCATATAATATCCCCCATAATCAAAACAAATGATTGTGCAATTCGGATTTTGCAT TTTCCTGAAATAAAATAGAATATCATTAGAATTCTCATTATTAAGATGTTTAGAATTAATTATCACACCG TACAATCTTCTCTTACTAATACTAATTTAATTCAGTACTATACATAGTAATACTAGAAATTACAGTAAGA AATATCAATATAGTAATCCTAGTATTTCCAGTAAACCTTTTTTCTTTAGTAAAACTAGTTATACCAGTAA TACCCAGAACTTATCCTTGAACTAACTAATTCGCTTTTAGGACCCTATTGTTAGTATTTTACATCAACCA TGATGTATAATTCATCTTAAATGAAATTACACACAGAAAATCATCGAAACACACATAAAAATACCCAAAA TCTATAAACACAGTTTTCAAAATCTTTTTAAATCTCTCATAATTTTCACTGGATCTTCTTTTTTTTTACA CTAGCCGAGATATACACTTTTTTTAATAACATTTCAGCAAAAAAATTCATCCAAAACGGACGTTAAAAAT ACCCGATAGCCCTAAACACAGTTTTTGAAATCGTTTTTAATCTCTCAAATTTTCATCAAATCTTACTTTT TTAACGTTACCTATCATATACACGATTTTTAAATGTAATATCACAAAAAAAAATCATCGAAAACGAACCT GAATTGCCTATTTTTTGAGCTTCAAAAAACGCTAATGGAGGATGAGAGGAAGAAGCTTGTACGATGAAGA AGGAGACATGTGGGTCAGGAGAAATCTGATTGGTTAAGGTTGTTTTGTGGGCCATATAGGTTGTTGAATT ATGGTTGGTTTATTTAATTGGAGAATAAATGAAAGGCTAGTTTGGGGAGTGCAAGGATAAAAGGGTAGGA AGAATAGAGAAGGGGCAGTAAGAATTCATTTAAGGGGGTATGGGGCATATGGAGTTAATCTCCTAAATGA AGAAAACTGTTCACTCAAAAACCCTAATTTAAACACATAAAGTAATGAATTAAGTCATATTTGTCTACTA GGTATATACCTATGCTTTGAGTTTGGAAATTATAAAATGAATTAATGGGCTTTATTGGGTCTAAAGGGGC TTTACATTTTTAACAGGAGGAGGAGGGAGGACCGTCCGATTGAAAATACTTAAGAGGACGAAGACAAATC GTGACCGTCCGATTGAACATATATCCGTTACGGTTTAAAGATCCAACAATACACATACCAAAGGGATTTT TAAGGTTTTCTCCCCAAATGTCTTGGACGACGACGACTCATACAACAGTGAGTATTCTTTTTGCCGATCG TTAATTTGTTTATTTTCCGTTCTTAATCATGAAATTGACGCAATCGATTGAGTTTTCTTCCTCTTATTTG CGATTTTATTCAAAGGTTTCTCTAATCCTCGTCACATCTCTAGATCCTAAATTCGTTTTTTTTTTTGTGA TGCGATGGATTAAGTTTCCTCGTCTTCTTTGTGATTCGAAAATCCTTGTCTCAATCTCTCTCTAGATCAT GTATCTGTGTTTAATTTTGTTTTTAGGGTTTCTTTCCCGACTCCACATGAAACCAACCACCGTCGTCGAG GCACGTCTTTGTCTACAACAAATCTTTGCGGGCTACTTGATGTAAAGCGAACAAAGTAGATCAACAATGG TATATATATACTCGAATCTACTTTGTTTTTATTTTTGAGTTAGCTATTTTCAACTTTTTAAAGTAATAAA GTCTCTTGCTTTCCTCTTTTTCTTGACAGGGTTCCATTACATCCACAACTCCGAACAGAGTCACTGAAGC TCTACTATCGCCTGATATTAGGTAGAGACGACTCTTGTGCTCTACCGATTCTTACATTTGGTTTTAGTTT AATCCCCAAAAAGATCATATAGGCTGACACTAATCTAATAGTGTTGTGCTAGATTCTTATTTGGGGACAT TGTCCCGTCGGTTGGTAGTGCATGCGATGTTTGGGGATGAAACTTTAAGTACCCACGGCTTATTAAGAAA ATGACCAGCGGCTTAAAAAAAATAAGGCAAAGACTCTTGTGACCAAGTCTTTAAGCAAAAGGTTACAGAT ATGTTCATGTTGGATGGATAAAACGAACAACAATGAACAACAACATGTCTTTAGACAAAAGGCCATGAGA TTGTTGGAATGGAAAAAAGCGATAAAAAAAGGGCTTAAAAAGAGGTCTTTGATGAGACAATGATTGTGAT ACCCACGGCTTAGAAAAATTCATAAGACAATGTCTGAATTGGTCTTATTTGTCCCGTCGGTTGGTAGTGC ATGCGTTTGGGGATGGATAGTACCCACGGCTTATTACGAAAGCGACCAACAACTTGAAAATAAAGACTGT AAATTTGTTGGATGGACTAAACGACCAACGGTTTACAATAAAGTCTCTGTAAACAAAGATTATGACTGTG TTGGATGGATAGTACGATCAACAATAGCCGTGTTCGTTTGTTAACCGCAAGACGCTCCCGCTGCGGCAAG AAAAAGCACGGTGATGATGATCAAAATAATAGAAACTTAAGTTAAAGTAACCGCCAACTATTTTCGGAGA CACAAAAAACGAGACGCCGGTGCCGCTAAAATTTTCAGCGTCCCTTCTACTGCTCCTGCGTCATCGGTGT TGCGTGTTGTTAATCGCCGCTGCGGTCATGGGTGTTGTGTGTTGACGTGATTCCCGTTTAATTTTTGGTT GCTGCCGCTGCGTCTTGCGGCTAAGAAACGAACACGGCTAATGAACAAAAATGTCTTTAGACAAAGGTTA CAGATATATGTTGGATGGATAAAACGATCAACAATAAACAAAATGTCTTTAGACAAGAAGAAAAAAGTGG TCTTTGAGGCAATGATTGTGTGATACCCACGGCTTAGATAAATTCATGTGAACCTGTTGAATGGCTAAAG CGATCAACAGTTTACAAAACGTCTTCAGACAAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGAC AATATTGCTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGG TCTTAGACAAAGATTTTGTAGTTTGGTTTTCTGAGTTTTTCTGCTGTAAAGACAACCAGCGGTTAAACAA GTCTTTAGACATCAGAGCCAGAGACTACTTATTTACATTACCACAAGGCTTGAAAATCGTTACAAGGAAA AGACCAACGAGTGGAAAGAGTTTAAGACAAAGACTATCAAAACATGCTCCTTACTTCACAACAAGCCTTG GCAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTTAGACAAGTC TTTAAGACAACGACTATGAACCAAGTCGATTAAGACAAAGACTATCAAAATATGCTCCTTACTTCACAAC AAGCCTTGGCAAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTT AGACAAGTCTTTTAGACTATGAACCAAGTCGATTCTTGGTTTTTGTTGGATGGTAAAAACGACCAACAAT ACCAAGTTTTGAGGATAGGCACTTTGAACCAAACACTGAGCTTGTTGGATGGTAAAAACGAACAATGGCA AACCCATTCTTAGACATAAACTACGAAACAAAAAATTGATGATAAAAACGACCAACAAGCCAGGTTTAAG TCAGAGACTGGGCCGATAATTGATTCTTCACTGCACTACTAACGTGTTAGAAAATTCGTTTTCAAAGTTG CTGTGAGAAGCGGCTTGAAAAAGTCCTTACTATGGGATACAAAAAGACGATCAATCTCATAAAGAAAGTT ATGAAAAAGACTCTGAACATTAACATATTCCTTACTTTACCACTTACAACGTTAAAAACTCACAAGGTGA GTATGAATCATTTTGCGTGAAGTAAAGACTAATTAATTGTGATTTCCTCAGGTTTTGTATATATGTGCTT CAGTAGGATCGGAGCAAATTTCAAGTGTAGCAGATTCTTTGACAGGTATGTGCTCTTCAAACTTGTTTGT TATTTAGTTAATACGATTATGAAAATCACAAGATTGTGACATAAACATGAAGTAAAGCTATATTTTCGTT TATGTGGGTATGTGCTTCACAAACTGTTCATATCCTCCTCACTAATTCCAAGGATTTTCAGGTAGAGTCT TTTCCTTACTTTCTTTATTTATTTAGTTTTCCTTACTTTCTTTCTTATTCATTAGTATTATTACATTATT ATAATCTACAACCTAAGTTAAGTGATATGTAAAGGTAATGAAGATCTTAGCTCCGTTTTTAACTAAAAAC GTTTTATTAAGCTGTCTTGACAACATTTCTCTCATTGATCTAGCATCCTTGAGGTTCTAGAAACTTATTG CTAACATTTCCATTGATGAACAAGTAGATTCTTTTTACTATTAGAACAGTATATTGTGCGTTTACAGTGT TTTACTGTTTTGTAATCTCTATTTTGCTTGAATGTATTATAAGGTTTTTTTTAGTTTTTGAAATGGATGT ATCTTGGAGTTTCTTGTATATCAATGTAGGTGTTAGACTCCTGCAGATTGTGGTGGTACTTTCAATGTTT CTGTTTTGTGTCATGCTCCCAAACCTCCTTGCTCATTATTAACAGTGTTAGAATCTCTGTAGTTTGGTGC TTGTATGTATTATAAAGTCTCTTATTTTGTGAAAATCAGTTTGTCTTGGAGTCTCTGATAGATCAACGTA GGCGAGAGACTCTAGCATGTTGTTGTAGTAGTTTTTCTTAAGAAAATTTATGAATGTTTCTGTTTTGTGT CATGCTCTTAATCTTAAACGGTGTTATTTGGTGCTAGCGTGTATTATAAGGTCTCTCGTTTATGAAATGG AAATATTTTAGAGTATTGTTGATCAACATAGGTGAGACTCGTGAAAGTTGTGATAGTAGTTTCCTTGAAT GTTTATGCTTTCTGCTCATCCTAACCTTCAGTGTTCACTGTTAGTAGTATTTATGTTGCTTAGAAAAATA TTTATTAATTTTAGTTAGATCGGTGCTTGTGTGTCTATTATAATGTCTCTTAGTTTTTCTTAAAAAAAAT GTCTCTTATTTTTCATGAAATAGATGTATATTGGAGTCTCTTGCAATTGTAAACCAACGTTGGTGAGAGA CTCTTCAAAATTGTGGTCGTAGTTTCCTTGAATCTCTAGTGTGTTATGTTTTGTGCTATGCTCATAATCG ACTCTACTACTGATCTTAGATCTTCGCGAGTCCTTAAACACACAAAACCCTAAGATTTATAATCGGCTTT GTTTTCTTTGGACATAAGAAACCGAGAAAGTTGATCTTTTTCCAAAATCTCAAAATGAAAAGAATCGTTG TGTTTAGATTACATGCGGCTAGAGAAATGGTAAACCTGGCCGGTGTTGGAGAAGACGATAAGAGCGAGCA GAGAATCGAAAGATCGTTAGCCTTCTTCATCAACACTTTACGTCTGTTGGTGAAACTGACTTGAAGTCTG TTCACATTCTCGATCTTCTTTAACTCAATCCTTCCTCTCCCCATCTTCTTCTTCTCTTAACACAAGCAAT CAATCTGGGTTGATCTGTAAAATCGAAACAGGAGAAACAGAGAGCTAGATGGAAGTAGTAAGCCTTTGTA TCATAGGTATGTATTTCAAATTTGTTTGTTATTGAGTTATACATTTATGGAATTACAAAAAAGAGATAAA GACATAAAAGTAACAAATAGTTTCATTGGTTAAAAGCATATACCTGATACTATTGTTGGCCGAGGAATTG TTCAGGTATATCCTTTCTTGACTTTTTTTTCTTTGATAAATCGATACTATTACAAAAGAAAATTGACAAA CTAAGTTACACGTAAAAGTAAATAAATTGGAAACGAAGATCTCAGCTCCATTTATAGTTGAAAATGTTCT ATTAAGGTGTATGGACTCTCAGTGTTTTAGCATCTTTGTGAGATTCTTGAAACTGATTGCTAAAATATTC ATTGATGAACAGGTGGATACTTTTTTAAAAAAATATTGGAACATTACATTTGTGTTTACAGTGTTTGTCA TCTCTATTTTCTTCATTTTGGTTATTGTATGTATTATAAGATCTCTTATTTTATGAAATTGGTGTATCAT GAAGTCTCTTGTAGATCAACGTAGGTGATAGTCTCCTGCAGATAGTGACAGTAGTTTCTTTGAATCTTGA ATGTTCTGTTTTGTGTCATGCTCTTAACCCTCAGTGATAATTATAAACGGTGTTAGTTATTTCTTTAGTT TGGTGCTTGTGTGTATTATAAGGTCTTTATTTTTTGAAATGGATATATTTTTGAGTCTATGCTCAAGATA GGTGAGACCCTTTTGCTCAAAAAAAAAGGGTGAGACCCTTGAAAATTATGGTAGTAGTTTCCTTGAATCT TGAATGTAATTGTAACAATGACCAGGAGTAGAATATGCCAAATTAATTAAACCCTATGAGCTCGTAAATG ACCAAACTGAGTTTTGGATAAAGTTAGATACTCGAGATATATGGACTGCAGAGCTGTGCCTCAATGTAAA AATTTGAAGCATTGGCTTAGGGCATCCAATTTTCTCAAAACAATAAGGGAATTTTTTAGTGTTATCAATT CAATTAAAAAGAATACAAATGAAATGAAATGCTTACAGAAATTTTTCTGATAGTTAGAATAAAGAAAACA AGAGTATATTATAAAATTATAATTTTCATATTTACGAAATTAAAATTGTATATAATTATTTTAAATGTAA TACAATAAATAAAAGTTGGTCATATCATATAAAAGATTGTATGATTTGACTATTTTATACTTGTTTAAGA ACATCATATAAAATATTAGTCATATTATTTATTTTAACAGAATTGGTTAAATGATTTAAATTTTAAGTTT ACTTAATATTTTGCTTTGTAAATATAAATACTAATATTTTTGTATAGTTGATTAGTTTTATTTATTTCTA TTATATGTACAAACTACGGTAACATTTTGTAAATAAATGTAGGCATTTTATTTATAATCGCTTAGGGCAG TTTTAAAGGATGGACTGCTTATGGATGGTGAAAAACTATGGTAAAACCAGTACTAAGGAACTACATCAGA ATGGATTCATGTCTTACTATATATTGTTCAATGATACGATACCTCGGTGAATGTGCCCAGCTATTTAGCC AAAAGATCATTGTATTTTATTTGAAGTTCAGACTTCTCAGCGTGAAACTTCTCGTAGTCAGAGACTGAAG GACCTCCTCCTAGTTTTTGCTAAAATCAACCATGTTCCCATCGTAACTATTCCTAAAATCCTCTCTAAAT AAAGGGAAAAAAATGAGAAGTAACAGAGGAAGGTTTTGGTTACCGTACAAGAAGAAGACAAATGGTGATC TAGGTTCATCTTTAAAGCTTGGTTTCGAGATATCATCATCGATCTTGTCACTCGAAACACACTTAAATCT TTTCACTTCACTTCGTTTCTCTCCGCACTCGTGCATATCAAATAGAGCAATCGCGATCATAACTCCATAT TCCTCACTAGAATCAAATCCCAAAACAGAGTATCACAAATCTAGATTGAATCATAAGAAAACTCAAATCG ACAAATCAAAAAAAAAATTAAGACTTTAGAGATGTGAGAGCAGTATCATTTCTCAAAAGTGCTTCCATCA GCCGCACGACGAACAGCTTCAAAAGAGAAAGAAGAAGATAGAAAGAAGAACCCCTTTAATGCTTTTTTAA TTTTTTTTTTGTATTTTTCTTAAGAACCCCTTTATTGGAGGTGGTCACTTGAAGAGAACACTTGGTCCTA CTGTACTACACTCAAGCTTTTTTTTTGTCATCTGTTGATTAACATTAAGGAAACCGAAGGTTCAAGAATT ACAAACTTCGGACACAAGCCATAACAGCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGC ATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG TAAAAGTTCTTATAGTAACCCTTTGTAGAGGGAGGGATTATCTCACTGTCGAAGATGTGCTTGAGCCACA CTGGACACTCAAAAGCTATTTGATCCCCCATTAATTATACCATCCTTATTTGGTACGTTCCCGTTAATAA GAAACTAAACTCGCCCGAAGAAAGCTTCCCATGAGAACCCCTAAGCCTAGTTGCCTTGGGGGCTAACAAA ATCTCATCATCAGAATCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTC CTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTCTTAACCCCAAA CCCGTCACGAGGCGTACTCACCAAGGATCTCTTCGATCTAACCCTAAATCCATCCACACCGTTACTCTCG TTCTCACGATCCACATCCTGATCGTTCGGTTCAACGGCCGTGGAAGTCACCGACGCTAACTCCATAGCAT CCAAAACAGGGAACAGATCCCCCGAGGAAGAGAACTTGCCTGGTTTGGTGAGACACCGCTGCTTCTCGCC GCGGTAACGTTTCCGGAGCTTCTCGATCTTGTGCCGGCATTGGATGGCTGTTTTCGCCGGACCTCCAAAG GTAGGCAACGACGCGGCCACGTCGTCCCAGTCAGCCGCACGGAGGTTCCCACGGCGGAGGGCGAACGAAC CACTTGTCTTTGTAGGCATTGACGAGCGCGGCGGTCTCCTCGTCGGTCCAGCACGGAGGCGGGACTCTCC TGGTAGTGGTGGTCGAGACGGTGACGGCGGTGGAAGGATCGATGGCGGTGGCGACGGGGGATTCATTATC GGGGGTTGACATGCCGGTGGCAAAGAAGAAATTAGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAA GAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAGGAGGTGGCCGGTTTGAGATTGTGCTAAAT TGCACCGCGTAGTGATGACGTGTGCGCAAGTATGAACAAGTTTAAACCGGAAAATGAACCAAATAGATGA CATCACAACACAAGAATCAGTATTCGTAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAG CAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGA TTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGTTAACAAACTAAGAATGTATTATACTG AGTGAGGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCT AGAAGTAAAAACAACATTAAAACTAAGATACTTACTTTGACATGAAGTACACCGTGTTCTGTCTCAAAAC CAACAATGCCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCAT CACCCGACACATTAATTTCACAGATTAGAAGGAAACTGAGAACACAGTAAGAATATATCTTATGAAATCG GATGAGGAGAGCAGTTATGAACATCCCAATCAGGTAGACAGATCAATACAAAAAAAAAAAAAAGGCAAGA GTAACTTCGTGGAGTAGTAAACTATGGCAATCAACCGAGGTAAATTTTTTTAAGACATGACAGATAGACT ACCTGGCCTTGTCCGAAGATCAGCCCAGATGTCCACATAACTTTCTGCCCACCACCTTCCTGTCGAGCAG GCACCAATACATCTTTTTGCTTCTTCAACCAACACTGCGCAGAGAAGAAACAGAACCCATAAACTTATTA AGTCAATCTCTGTAACTTGAACCTATGTCAAGTGTCTTTTGTCCAACACTTAGGCGGCATGATCCAAGGA CAGTACAACTTAAAACAAGGCGATTCTCGCAGACTCACCTCTCCGAACTTGGACCCGCAAGCCTCTTTGT CCCCGCAGAAGACCCATGAATCGCACAAGCAAGGTCCGTCGTCGCCACTGCACATAACTTTACACGCCTT GCAACATTCATCCGACGAATTAAACTTGAAATCCGTCCCCCACTTCACCGCCGAACCCCACAGCTCCAGA TTATCTACTCCACGGCAACACCCTCCGCCGCCATCTACACGGGAGTGATCTCGCGAGTCAGTGAACCGGA CGGCGGAATCGAGTTTGTGACCTTGGGGACGGAGAAGAGCAGTGAAGACAGCGTAGACGACAAGACACGA TATCAGACCGATGAAAAGGAGCGCGGCGGCGGTAAAACGGCCAGGATCTCCGTCGTTTAATCGACGGGGC ATGGCCGGAGTAGTCTCCGAGGGTTGGTTGACTTTTGTGAGGAAGATGCGAAAGCGAAGAGGATAGAGAA GTGAGGTTTCATGAGATATTGAAAATACGAGAATCAATAATGATGAAGAGATGGTTGGTGAGTCAACTCG TGCGGCTGCCTCTCTGTAACCTTTGAACTATCATGGAAGATTGTGATCTCATTATTTTGTTTTCCTGTCT TCCTTTCGGAAGTTTCCTCTACGCTTACGTCAGTTTGAAGTAATCAAAACACTGTCGTTTTAGAATTCCT TTTTGGGTTGAAAAATCCACTGATATATACGTACCATTTGGTTTGACCAAAGAAAATATGTACCATCATC ATTGGTTGTATTAGGGATACTAGATTTTAACCCGCGCTTTCAAAGCGCGAGATCGTTTCTTTTTAAAATT TCATTTAAATTAATAAACATTTGTCGAATCTATATTTTAATAGATTTTTTTATTTGTTTATAGTCAATTT TTATAATATTGTCTTCTTTATTTTTTTTTATTATTATTAAAATAAAAATGTTTGTCCTATATTATCCTAC GTAGATCCTGTTGGTTTGTTCGAATGTGTGGGTTTGAATAGGAAATCGGTGTTGCCTATTTATAATATTG ATCGGATTCAAAGCGAGGTGTTAGATTTTAGGAGAAACTTGGAGAGGAAGTTGGGAGATCTTCTCTTTAA AATCGAATCTCTCTATATTTTAAGATTAGTTTTTGAAAAATTTAGTTACTATGTCAAATAGTTAAAATAT TTTTCTGCGTGTTCCTAAAATTAGGGCATCTTCTTTTTATTTGATTTGATTCCGTAAATCTTTGAGTACA AAATGGGATTTAAAACGATTTAATCAGCTTAAAAACAAAAATGTAAGTAGCAAATTGGTTGGGCTTTTCA TTTTCGAAAAACATTTAAAACAATTTAAAAAACAATTAAAAAAGGAATGAAATGTTTTGTAATTAATAGG AAAATTCAGGGGCAGATTCATAAGAAGTATTCTGCTTTAATAGTATAGATATATCCCATATCGGGAATTC TAAGGGATATTAAATAATATATAAAGGGTTATGATCAATTCATTAATTACTAATTGGTTTTAAGTTGAAA GCTCATAATAAAGAGAAAAAGACCAAAATAGCACTAAATCAAGTTTTTATTCCCAAACTAGCACTCAAAG CCAAAAGTCACAAAAATAACACTCAAGGGGTGGGGTTTAGGGTTTAGAATTTAGGGTTTAGGTTTTAGAG TTTAGGTTTTAGGGTTTAGAGTTGAGAAATGAGGTTTTGAGGATAAGATTTCAAATTTTGAAAAATAAAA AAATTTAAATTTTTCAAAAGATAAAATGCTATTTTGGCCATTTTAATTTTTGAGTGCTATTTTTGTGATA TAAACTTAGAAATGTGCTATTTTAGAGATTTGCCCCATAATAAACCCGAATCTAACATGGTATCAGAGCC CATATCCTAAATATCCTAAAACTCTTAATTAAAAATTAAAATTAAAAATTAACCCTTCCGACGGGGTATA AAGGTCGTGATTAACCCTTCCAACCGGGTATAAAGGTTGTGTTAAACTCGCTCGACTGAGTATAAATGTC TTAAAATTCTGAGATTTCTGGCCGATAACAGCCATCATCTCGAGGAGGGGTATTAGGGATATATATCCAC ATCGAAAATTTTAAGGGACACTAAATAATATATAAAGGATTAGGGTCAATTCATTAATTACCAATTAGTT TTAAGTTGGAAGCCCGTAATAAACCTGAATCTAACAGGTTGGTAGTTTGAATTAGTGCAAGAAGCAGCCG GTTCCAAACTAGTGTAAGAGTTACCATAAACATAAGATAGTTTTGCTTCAATTTGTTATTTATAATAGAT GAATGCTATATTTGTGGAAATTCTCTTAATTGAGTGGTTTAATTTGAGGGTTCGTCAATGTTTATATATT AGTTTCGAGTACAAGAGAAAGAAATTTATGAATATTAATGAAGACAAAATGTACAAATATCTTCAGCATC GTGTAAGTATAACCGTCAAATCGTATATTTTCAGAACATGTATAAAACAGTATAGTTAAATGTAAATTAT CATAAAACATGTTATATAATATTTATAACTAGGGTCGGCCCGGGCTACGCCCGGGTTTTTTGTTTAAATT TTAATTTTGATTATATATTTTGTATATTTATTTAATATATATATAGTATAACCTATTATAAAAATATAAG CTATTAAATTATTTATAACTATGCATTTTTTTGTCTTATGAATTGAAAAATTTTAAATCCAAATTTTAAT ATCCAATTTTTTATATTTTGTAATTGGAAACTTTATATAAGGTGAAGAGAAAAATTAACAAAAATTAATT AAATTTTAGTTATAGTGTTTGATTGGTTGGACTATAGATATGTTTCATTTCACTTACACCTTTTTATATC TTTTGTTTCCAATTAGTTCTAAGCAATTTAATTGACCATCCCCCTTGAAATCTACAATCTTACTTAATGT TTTTTTTTCAAAAATCAGCGGTTAAAATGTTATAATATTTTCTACATCAAAAATTTACAATTACATCAGT AAAAATTACATACTAAATTATTTAAACAAATTTTCTGCATTTATAACTAACTAATCGGACCTATAATCTG AATATTTTTTTATCTCACTTATATAAGTTTTTCGATTACATATTGTTAAATGGACAACCCGATAAAATTT TATTTAAGTTTTAGAACCATTGAATTCATAACTTTAATAGGTGTTTGAAAATTTGTCTTTCCAATTTTGT ATGTTCCGCTTCATCATGCAATATATTTTGATGTAATTGCACCATCTATGTTTATATATACATTGTTTCA AAAAAAAATCTTCTATATATATATATATATAAAGTGGATATATATAATCAATTTTGAACAATGACCATAA TCGTATAACAAATTGTCGTTACCAAAGTATAACAAATTTTGTGTTGTTGTTTTATTTATATTATAGCAGT GATGTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGC CAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTTGCTT GTTCCAAGCAGCAGTAAAGTAATTCACAGTTAACAAAAAAAACAGATGATACATGATAGAGCACCTCCAA CAATCTTGGAGGTTTATGCTTGTAGCAACAACTATTAGATCAACACAGAAGCCTTCCAGGTGGTTGTGAA ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATC AGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATAT GAATCAAATACCTGTCGATTTTAATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTA TGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTG TAGGGTCACTCACAATACTCTTCACAGCTGTGAGCTCACAGATAAGGTCTACAAAGAAATCAAGATGTCA ATATCTAATCACTTTCCAATGTTGATCCTGGGCTAAAGAGATATGAAGACGATTACCGGGAAGGTGTGTG TTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAA CCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTC TGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAG CCGTGAGACGGTGGCGGTATGAGGGTTGCTTGAAACATTAAAAAAATGAAAAAAATAATCAATAAGGGGA TTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTG TCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCA TCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC CAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAGGTTTTGCTGATATTAGGAGCCG GGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCACTGCCTGCAAGGAAGATAA GAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATC ACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAA GTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTAGGGG AGATGACGAACCCCTAGCTTCTTCTGTCGACATTCTCGATGAAGGTGCAAGAGGAGAGACGAACTCAATT TTTGCGTAATCAAACTTAGGGTTTTCGATTACAGGCTGCCGGGCCGCAGAAGAAAATATCAGCCCAATCA CGTTTCACAGTCAAAGCCCATCGGATTAAATGAAGTGATGCGTTTTGCTTGTCTGGAACACGTGTCATGC TGAGGTGGCATCACCAGGAGAGAGCAAACCATACTTTATATATAAAGATAATTTGCAGTATCGTAATAAA CTAGTGAGTTTGTTAGAAAACGAAAACAAAGTGTGAAATTAGGAAAATATCCAATACAGTGAAACTAGTA CACGCACATATACATGTCATAATACAAATTATCTTTGTCGAACTGTGAATAATAGTGTCTTTAGGTATAT AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGA TTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC TTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCAT GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCG ACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACACCACGAAGT CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG GCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCG GAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA AGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACATCTTTTGTAG CCACCAGAGGCAGATTATCTTTTATCTTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTC ATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTA ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG TTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTA GTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA AGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT TAAAGATGCTAAGATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTT GATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT TAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCT ATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT AGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGAT ATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC ATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA AGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACT TGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG GAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAA CAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG AGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA TCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGT TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTG TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGA AATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCA GCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATCTTG GAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGA GCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC TTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAA GCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAAC TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT CTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGT GAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTG GTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT TGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCT TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG GAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGA AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGA GTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCAT ACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGAC ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC ATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAAATCAATCATTTAGTTTGCATCA TTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATG CCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGC CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGT TGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCC TTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGT ATCGGGAACGACAATGCTTGATCTTCATTCTTGCTAGATTGGACACTCTATTGTCTAGCTATAGGTGGGG GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAAT TGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCAGCCTAAAAAA AAAAAGGAAAAAGAAAAACGAAAAAAAAAAAGAGAAAAAAAAAAAGAAAAAAAAAAGAAAAAGGGGGCTA GCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGA GTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATT GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGAT ATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCT CTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGA ATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGATG AGTGTAAGAACAAAAAGAGTTAAGATAGGCCTAGAGAAGCTAGAGTGTAATAAGAGAGTGTGCTAGTTGT GTTTCTTTTGGCTATGTGCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGAC AAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTG CATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGG TATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAG TGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCT ATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACG AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTC CCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCT CTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCT CCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTA CATTTCTAAAACCTATGTTTTAAACATCTTTTGTAGCCACCAGAGGCAGATTATCTTTTATCTTTTGATC TATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGT TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCAT GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAG GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCC ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT AGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGT AATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCAT CTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCC TTAGTTCGATACTTGATCACCCAAGGTCTAATCCTTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAGAA AGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCATTGGTTGCACTT AGATTAAGTGAGTACTTGCATTCCCAGTGCTTTGATATCCCTCAGAACTGGATCGACAATCTTCTATACT ACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAATAATTATGAGATAATATTAAAGTATGTGA TGCAAATACTCTGAAAAGAGTGAATAATAATGTCTTTAGGTATATAGCTAATTATGAGATAATATTAAGG TATGGGATGCAAATACTCTGAAAACAATATAACAAAACTACACATTGTAGTGTTTCCACGTGGGTACCAT AGAAATGGAAAATTAAAACCGAAGTTGAACCAGCCAACAAGAGCATCAGAAAAAAGAAATCAAAACAAAA CTCCACCAGAAAAAATCTTGAAGAGGAACATTAATCTCTAGTAGCACCATCAACGAAGGAAGCACTAGCG GAACCATAAATACGCATAGTTGAAGAGCCATCTGCCTAAAAGAACTCACCACTATATAAGCTAGGTTCAA GCCTTCAAGGAAAACCTTTGATCAACTAATTAGGTGTAATATTTTTTGTATTGAAAATGAATTATGGAAC AAACCGTTGAGCAACATATTTTAAAATGCTTTCTAAATAAGTTTTGAGTGGGGTATTTTTTACGGACTTA CTATACTACCCCATTTGCTTTGAAAGCATATGTCACCTTGTATTTGCTGTGCTCTTATTACCTTTCCAAT CACATTTTATATTTATTTACAAGACTTTGTCCGAATATAGATATTTATCTGCAGTGGACAGATGCGTTTG GGAGCCCATAATAAAGGATAGAGAGACATGCACTTTTGGATGATAGCTGAATATAGAAACTAGAAAGCCA AGTCGATAAACTTATCCATCCCTCCACTCACTCGATCGGTATCGAATGGTGTCGTTCCTATCATCTCGAG GCATTGTCGATAGCCGCTTTATATCTGACACGTGGTAGTAGATTAGCATATGTCCTCTATCATCTTTTTT TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTACTCTATCATCTTGTTACTTACAATACTGTCCAT GTTGCTAATCTTCCTTTACTTGCACTGGAAGAAAAAAGTAATTATCAATCCTAACCGCTAATTTATGATG AATCTAAATAACACAAGACACAAAGTTCAATATTTATGACTAGATTGATAATTATTCTATTCTTTCAAAA GCATTCTTGTTATTTGTAAGTGTTTAGATTCTCTGTGTTTTTTAAATTACATATTTTTGTATTTAATACA TATTAAAAATTGATTATAAATATATCATTTTATATAACTAACTATTTTCTGAAATTTAACAAATAGTACT TGAATAAGCGTAACTTAATTTTTTTAAATTTATCATTCTTAACTGAAAAAATTTACAAATAAATGTAAAA CATAACCTTACAACAAATAAAAGTTCAAACCTTTTTTTAATAGAAGAAATATTAATTTTAACACAATATA ATGATTATAAATATTAGGAGTTGAAATTTCATTTTAATCATTATTGGACTTTTTAGTTTAGGGATGAGTC TATGTGTAATGATATTCATTTTAGCTGTTAAATCTTATATATTAAAACAGAAGTAATGATGACTTCTTTT CATGTGTGATTTTTTTAGTTTGAACCATTCCTAGAAAATATCATATTTTACATAAGTTCGTTATTATATC TTTTAATATCTTTATCTTTTTATTTGAAATACAAATGAATATATTTAAAATGTTCTAACAAAAATTATTT AAAATCTTCTTAGAATCTTTTTAAATTTACTTTCAAAAATTAGTCAGTTTTAATTTAAATTATCATAAAA TATAATTAGAAATTAAAATTGAATATATTTTTGGTTTATAAACGAAAATTTAAATAAAATGAAATTAATT AATTTCACAAATACATTTACTAATAATTTTTAAAGATTTTGTTAGAAATAAATATTTATATTTATTTTAT TTTTTTTTCAAATTTGTTTTCTAATAAAATAAAAATCATGATTTTTTTATGAATGATATTTTTATTTGGA CCATCATTTAAATTTTATATTAAATGTATATCACTAATGCTAATATACATAATATTTTTAACTACTTTAA TCATAATATATTTTATATCTTTTAATTTAAAAAAAATCTAACAAATCTCTTGAAAAAGATTATAATAAGA TCTTAATTGTCATAAATTGAATATAAATATTTTCAACTAATTTTGTAATTAGTAATGAAATGTTACTAAA CGAATAAAATTATATCCTATTTTATCAATTTTATAATAATATCTATCATTTTAAAATAAAAATGTTATAT TGAACAAAGTATGATAAAATTATTTTAAATTGATAAGTTAACATATTTTATTTTCATAAATATAAAATAT CTATGCTAAAAATATAATATGTTGGTAGAACGGGTTATATTAGTAAACTATATAATACATGTATAAAAAT TTAACTTATCTTAAACTTTTTAATATACAGTAATTTATTATATAAAATTAATAAAAATTAAAAAATTACT AAAAAAATCTAGCGATTTGAATTATGGATCATGATTATAATAAATTAAATACAAAATTATTTTCATATAT GTTGTTTCATGCATTAAAAAATTTAGTTTAGTAATCAAACGCAAATTCAATAAGACAAATATATGATAAG CAACATATATATGTGATGATTTTAATTTATAACATGAAAACTATAAAATTATTATATTTGTCATAATTAT ACAAACATTTAAATATGTGAGTAACATTAAAATATATAATAATTATGTAAAACAAATATCTATATATATA AATGTGAAAATATATACCCGCACAGTTGTGCAGGTGGAAATCTAGTTATATGTTTAATAACCCTTTTATT ATTATACGAATACTATTCATTAAACTATATTGGAAGTTGCATTACCCTACAATCGGATTTAACCAATTTT ATCAACATCATTTTTATAAGTCCCGTTATTAATAGATTATGTGTTATACTTATTTGGTTAACAACATAAT TTAGAATAACTAAAAAATGAAAATGATAAAAAAATGAAAATGATCAATGTTTGTTACGCTAATGGCAGAC ACGTAAAGACCGTACAAGTCAAAATCATTGTATTAAGTCACACAATTCAACAAAACCATCCACAAGAAAA GGAAAATTTCATTTTTCTTGCCACTTTTACAAGTTATTGACACAATTATTACCTAAAATAGTCTTTAATA GGAGAGACTTAATTCACCAACCCGAATTCTATAATGGTATGTACGGCATTAATGTTTGAAGAATAAATCG CTAAATCATTTAATTACTCGTGATCTGTATGATTAATGACGTGAGGCATTTAACTAATCACATTAAACAA AAGCCAATGATCAATGGCATAACGGTAAAATAAAGCGAAATACAGGGGTCTTAACTTAACTAATCCTCTT TACCTTAGCTTCAAAACTCAGCTCCTTGCTACTCTTCTCTCGGAACGAAGACAGTTTTAAAGGAAGAACA AAAAAAAGCAACAGAAACCCTAATTCGCGAAGAACCCTAATCTCAAAATTTATGTATGTAAATGCATCTG TAGCAGAACGGCGGTTCATCGGAAAAGAAGCCGCCGCTTGTTTACCTTCCGATCCCAAACCTAAGATCAA ACATCATCTTCCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCAC CCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGCGA CGAACCAGAAGCTCCTCCGCCAAGTGATTCGAGTCCGTTTGATATGCTTCCACCTCCGTTTCCTGCTTCT CCTCTCCGTCCCTCCTCTCTACGTCTTCTTCCTCTTGATCAGTTTCCGCTTCTTCCTTGTCTTCGTCTTC TCCATTCTCGCCTTCTCCTTCTTCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCGCCTTCCTTCGATTC GCCTGATCATCGCTCGCTTGCTATCCCTCAAGCTGAGATCATCCTCCTCCTCCTCCTCCTCTCAGGTTGT TTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAGC TCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTTTATTACTACTCGA TGAAGGGTAAGTACGAAGGGGATTGGGTTGATGGGAAGTATGATGGGTATGGAGTTGAGACGTGGGCTAA AGGAAGCAGGTACCGAGGTCAGTACAGGCAAGGGATGAGGCATGGAGCTGGGATCTATAGGTTTTATACA GGGGATGTGTATGCTGGTGAGTGGTCTAATGGACAGAGCCATGGGTGTGGTGTGTATACCTCTGAGGATG GTAGTCGTTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCATTACCATTTCAGGTGAGA AGTCATCAGTTTTCGTTTGTTAACTTTGTGCGTTCTCATTAATTAACATGCCAAGGTGAGGTGGTGTGGG GTTTGAACACTGCAGAGTCGTTTAACTTTTGTAGAAATCGTGAAGCTTTCTGTATAAGGGCCAACTATTA ACCAGTTTGGAATTGAAATTAATGTGGTTTCTGATAGTTTCTGACTTCGAATCTGAACTTTATTGCTAAG CCTCTAATTGTGTTTTGACTTAGGATGCTGTGTTAGGCCTATGTCTGTGTTAGGTCTAAGTTTATGGCTT TCGATTTTGAATTGTTGATGGATTGTTAGGCTGCCTATACGTTTTGTTGTTGGCGTCACTCACCTTTTTA GGAGCAAATCAATTTTTGAAGATTAACTATTACTGCCATTGATAAATGCACGAGATAATAAATTTTAAGA TTCTGTCTTTCAGTTCCTGTTACATTTGGACCAAGAGTTTTATGTTGGACGGTAGTTCTTACCTTTGAAA CATTATAAGTCTAGGATGGCCTCAAGGTTCAAGCTTTTTTTTTGTTTGCTGGCATAAGCATTGATCTTAA AATAATTCGATCGGTTACTGTGTTGTCTTCTCTAGTGATACCTTCCTAACTAACTTGAAACTACACCTCT GTTGCAGAAATGGCGATACCTACGCTGGAGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTTTACCA ATTTGGAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGGCTTGGTATGTACACA TTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGCA CCCGTCCTGGTTCATCCTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCT TATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAGAG ACCAATTTGTAAAAATAGTATTTAATGTTCATATCATTCAACAGCAAGCTAGGAAAGCAGCCGAGAAAGC ACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAGCAGCAAATTCT GCTAGAGTTGCTGCAACAAAGGCTGTTCAAACAAAAACATATTACAGTAGTGGCGGCGATGATCCCTTAT GAGTTCGTGTGTCAAAGCTTTTGATATAGTCACAGTCATGAATCTCACCTCGAACTTCTTCGGTGACATG AGAGAGAAAAAGAGAGACATCTAGAGAATGGCAGTCAAAATTCGCATCTCCGTTGAGATTATCTTGAAGG TGGAAACCACTTGGAACCAATGTCGAGATCTCATATAAGTATTAAATAAGAGATCTGGCCATGGAGCAAG CAATGCAGGTTTACTTTTTTCATCTTTTCTCCCAGCTCTTTTCTTTTTTATGAGCAGGCTGGTTTATAAG CTGTACATAGGTTGTTGAAGAGTAAGCAATGTGTGTTAACAAAAGATCTTTGTAACAAGCGTAACCCATG TAGAGAAGCAACAAAACATTGTCTTTTACGTTTTCACCGTGTGAATAACAACATCTCTTCTTACTAGATT TCTTTTCAACAGAAAACGACAAGTTATAATCAACTTGACACAATCAACCAAGATGATGTATAATGAATTG ACAGAAGATTACATATATAATGGCCAATGACAAGTGCCAACATATTCATCTGTTCTTGTAAATGGTTATG GTCTTGAGGTACGATCAGTGCTGTCATAAGTCCTAACCATTCAGACACAATTAATGAACCAGAACTATGA AAGAAACTAACCACAAGCTAGAAGAATTAAACAACTGGTTTCTTGTAGCCATAGCATAACCCGAGCTTTA CAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC TCAGGTCCGTTTTAGTCTAACATGACCGGAGAACTCCCAAAAAAAAAACTAGAATAAGAGAAGAGATGCA GAAATCGTTCTCGTTGATCCAAACGGTGGCAATCTCCGGCGTATTCTCCGCCGTCTCTTGCTGGTGAGTG ATTATTCTCCCCCCGCCCCCTTAACTCTCATTTCTTCAATTTAGGGTTGATAATAATATGTCGTGTGTTA ATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGA TCTCCGTCGCGGAGGTTCGGACTCTGGTTGTCCTCCCCATTCTTGAGTTAGGTGACGACGATAGCTCTTT TTGCACTCTTGTTTGAGCAATTATCATTGTATCTTTTGTTTGAGTTATATGAAAAATCACTAGACATTTA CTATCAGTGTAAACCACATTGATTAAGATCATAAAGATTGTAACACTGTACTCTCTCATCTCCCATGTTT ATTATGTATTAGACATCAAGAACATGAACTTTACAATCAGGGCCGTTGATTATTTGAGACTAAATGATCA ATACATATTGTTATTTGATATTTAAATTTGGGGACGAGAATGTTTCATCTCATTATGTTCAAGATCGCCT ATGGATACAGTATATGTGAGAAATTAAACTAGAGAAGTCTCTTCAACCTTCTCAATGATCCTCCTGCCTT TGACAAATCCCACATAAACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCT TAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCTCTTGTTCATTTTTAGGTAAGTAAA TTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAGTCATAT CTCCCTTAACGCTTTCTCCCCTGCTAGCTCAGTTCCAGCCTGCCTTGTCACCTTCTACACTTGTTTAACC AGACCTTCCGGCGAGCAATTTGCCGTGTTTGCGTAATTCAGGTTGTTCTCCATGCAGGTGAAGCTGAACA CAGCACCATGTGTGTTGAACAGCTTACTATTGGTAAGTACCCGTCATGGTTTATTGTGTTGTAAATTTGT AATACCCATCGGTTAGCTCAGCCGCGTTTGACCTGGTGTTGTAGTGCCAGTATATTCCGGCTACTTTTCC TGATAGCTTTGCCCCGGTTCCTTGAAAGATTGCTTTCGCTGAAGCTAGAAGTTTGTGTCCCTGTTCCAGT AACTTCCCTGAATACCAATCCATGAAAAACTTTCCATATTTATTTATACTGTTCCATGTTCCATCTCTCC TGAAAGAACTCAGTATCTTCTGGAAGGTTCTTGTACTAGCCAGCATCATGAGGCCCACTTGTTCCCCTAG TTAGTCTTCTCGACTGATGATTCAGCATATGCTTGAAGCGACGATCTCAAATACTGCAAATCAAGAAGTA TATAGTTATGTATAATATTGGTGCAGTTAACTGTACACTATACAATATCTCACTAGCTTAAGCTATACCT TTTCATAGCACTGAACTCTCCAATTCTCGAGAACCTCCGGGTCCCATTGCTCTCAGGGTATGATGGGTAT CTCAACTCTCCACAAGGTCCCATTCCTACTTGAATTTCCTGCAATACATGAAGAAATGATGTGATTAGGT CACTGCATATATATATACTGCCCATGTCTTATATGAAGTTGATTATTTTTTTCTTTAAAAGAGTCTAGAT GCTTGCTTACCGCAAATGACAACTTCTATGTAATTTCTGAATCTTTCACGGAAACTCCTTATAAAATCTG AATAGACCTGGATAGGTGTACATGCACATAATCACATCCCAAGGAGATATACTCTGGATTCCTTCTCCCA GATTTGTCTGTGTAGACAAGATCAGGGTTCTTACTGATTTCTTCAAGCACCCATGGTTGCAAGGGAATAC TAGATTTTAAAAGAGACAAACATTAGCTACGCTAGAAGTTTGAGACAGATTTTGTTCAAAAGGGAGAAAC TAAAATTGCTTTCATTACCTGCAAAAGGCTCCAACGTTTCTTCCACATTGATGGGAAGACATAACGACGT GGAGTTTGAGACCGTGCATCTGAACCATCTGTATAAGCGCGGCATAGCCTTCCCAGTTATACTTCATAGG TCCATCTTTCTCAATCAATTTCCACCAAGCAAGCACCAACCATTTACAGTACTGCCTCAAACAGGTACGC TCTTCGAACCCTCATTTCGTAGTTAAGAAACAAATTTGTGACAATAACTGATCGTATAAATTATTGAACA TACATCCCCCCATTCTCTATCATGATTCCTTATGTTAATTCAAAGACACTAGTAATGTATTCTTGCCAAG CATATAGATAGATACATGAGCTCAGTTTCTGGTTTTGTTCGGTTAACAATGATAATATGCATGTTGTGAG CCTTATGACCTCTCCGGACGCTTTAGTGCGACTCTTTGTTTCAAGAGTCTACGGTACGCAGCATTGTAGG ACAAACATGTAGTAATATTATGTACATGCAAAGTTTTGAGCTTTATTATGGACCGATGGTAGAAAAAGTA CAAAGGTTATGGATCTGTTCATACATGCATCTGCAAGAATCAGTAAAAAAATAATGAGTAAAATGAGTTG ATATTTTCTTTTCACGTACATAGTTTCTGACTTTGATGTTCGTTGCTTGATCTAATTTAGTCTACATCTG ATTAGTGCTTTGTGTCTTGACGTTGGTTAGAAAAATCTAGTGTGTGAGTTAAAAATCGTGGGATGGTGAC TTGTTTTATTGACTTAAGGGAGTTTGATACAGTTGAAATAATGGTAAAATTCATTCATGTGTGTATTTGC TGGGGCTGAGCTTGAGTGAATGTCGCTAATCTTCGTAGACAGAAGCATATAGTGGCTAAAGCAGACTATA TGGTTTGTGGCTAGCTCAGTGGTCATATGGTTTTGTCACCAATTCATCATAGGCTTAAGTTGTTAAACTA AACAAGTCAGAACCTTAACATCTTCGAAACCTACCACTTAAATTATTACTTACCTATTTGCGTCACCAGA TAGCATGTGTATTTAACTCCCATGTAGAGCAACTGGGTTTGCCCGGCCCCTGGGAATTAATCCAGCCTTC GGGTTTACCTTGGGATATCAAAAAATAGAACCCTTAACAATTAAGCTTTATAGTGTCATTGTCTTGCTTA GATATTTTTCTGCTTTGTGAAATGTGATAAGTGTTCATCCAATAGGTATGTGAGAAAGTTAACGAGTTTG TATTTTACCAATCAAATAAATATCTTTTCGCATTAGTACAAGATATATTCTCCCACTCTCCTCTTATGTT GAAGCATGGCAAGACATAGTCTCTTCACACGAATAAAACACATTGTGTAGAGAGCCAACTCGAACTCTGG ACTTACTCCAACTAGAGTACTTGACACTGATTTTAGAACACAGTTCCACTAGAATTCGATCGTTAGCAGC TGAGTCTCATGAATCAGGCCGTAACGGAATCATAAGTGTGATACCTCAGTTAAACAGCGGCATGTTTCGT TAGCATGTATATTGGAGGAAACATTATGTGATGAATTGAAAGATATGTTACTTTAAACAATTTCACCAGG GAAATCTATATAGCGTTGATAAACAAAGTTTAAGCAAAAAAGAAGAAGCTTCTACGTATTGTGTTCTTTT CAGCTAAATCTATCGAAACTCCTTTAGGTTCTGAGTGAAAGGAAACTTAAAAGCACTATCTTAATCTAGA TTTGGTAGTTGGGTCACGACACTATTCTATTATGTTTTCACCGCTCGCTTCTCTTTAAATGCTTCTCCAG TTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGG TCGTTTGTACTTGCTGACAGTTAGTTGATTTTAATTCTACAAGTACAAATGAAAAGAAAAAAGATAATGG CTCATATACGATAGTGCCATAAAACGTGTTCCATTTCAGTAAATTTCGTAATTAGAGTAACAAATGTTAA CTATTGTGGAGGTATAGTAATTGGTAGATATATCAAAAATATGTTCCTATTTTCTACCGAAATGAGATAG TTGACTCATAGCATGCAAATTTACGAATACATAGTAGTACAATCACAAAAGAGGTGTTTAGAATTAAAAT TGTATTGATAAAATGTTTTAAAATATTACAAAGAGGATCTTTACTTTACTAAGAACACTCTTTGTAAACT TGAGAGATTCTTCGGTACTTAACTCAAATCAATTGGCTCGTATTACAACACACTCCAAACCTTTTTATTT ATAGTCCAATGTCTAAAAAATATTTTTTGGAATATCCTTTAGAACTTTAATGTCTTACAATATATAGTAC ATAAATTATATCTTACATTATTCACCACACATAATTGATGTTGACTCTTTTGGCTAATATGATGACATAG ATATCATAATATTAATATTATCTATGTTAACATCAACTAAGTACGACATATATTAGTTAAAAGAGTCAAC ATTAATTATGTGTGGTGTATAATATAAGGTATAATTTGTGTAGTGTGTATTGTAAGATATTAGATATCTA AAAAATATTCTACTACAAGTCAGCGAGTGTCGCCGTATGCAGATAAACAATGCTCATAATAATCAATCAT AATCCTATGTAGTTTGGACGCCTAAATCATGAAAACCAAAATAATGTTTTTGGTACGATCTATTTTTCTC TCTCGTAACTATCACGTAGCACTATATCCACACAAAGTTAATGCCTCATTCTATATACCCATCAAATGAA TATTAAATACCAGTTTCCCATAAATTCAAAGTTCAAATCTTATTTACCCCCGAATTAAAAATTCAAAATC TATTCACCCTAAACCATTATTAAGCTTGGCTTAATGTGTACCAACATATGTTTAACCATTAAACACCAAT CAAAATCCAAATTAAACTAAGAAAATTCCTTATTAAAGCGATTAATCTCACACTCACTGGAAATAAAACC CAAGACTTAAAAGATAAAAATCCCCAAATCATTAAAACCAGTAGGGATAAAATAATCCGATTCTTCTCGA TTTTGATGATTTGGGAATTTTGATGAGTGTAAAATGAATACCTTTTCTAGAGTATTTTCTTGGTTTAATT TGAGTTTTGCCACGTATATGGTTAAGAATATAATTGGTACACATTAAACCAAATTTAATCATGGTTTAAA AGTGAAATTTAAACTTTGAATTCACGGAAAACATGTATTTAACATTCGGGTACATAGAATCAAACCTTAA CTTCGTGTGGACATGGTACTATACCAAAGTTAAGAAGATCGTTAACCATATAAACAAAATAATATCGATG ATAAAAAAGATTGAAAAATATTGAAAAAGTCTTTCGTGTTATTTGGTAAAAACAAGGACAACAATAAAGG ATTCTTTTACAATTTTATTGAAAGAAACTCAAATGTAAAAGATAAGAAGCATTTATGTTTGAGAAGAAAC TAAACATTTGGGTTTTGTAACCAAGCAAAGTAACCTCCCAGAATGCCTAACTCTGTTATAGACAAATGTT ACACAGATCAACTTAAAAGCTCTCTTTGGGAAAACCAAAAAACACATAAAAAACTCACTCTTTGCAAAGT CTAGTTCTTTACAATAAAGCAATAACTTCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCA AATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTC TTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCAC GGATACGAGTCAGGTGACGACCAAACCTTCTGTTCCTCAAACTCTGTCTGCTCAGCTAGAGACGTCGGCA TGCAATACACTGTGTTGGGCTCTGGCTCCTTGAAACTAGCAACTGCAACGCATCCAGGAGATACGAATCC TTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA GAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGTTAGCACTTTTTTA TGCTCTACACTCGCTACAAGTTCACGGTTGAGAAAAATTCAATGGATTAAGGGGTCATATTAATTGATGA GAGATACTTACAAGGTCATAACCCACTGGAAGTGCAAACACTCCCTCGGTGTTATTGTAAACAGCAGCAA CATTTGGCGGATGGCTACCAACATGAGCTACATCACCCACTGACACAAATCTGGCAAAACAACAACACGA AACTGCTTCAGTTTCAAGAACAATTGAGCGCAACTACAGTATCATCATTAGCGTAACAGATAATACTTAC CCCTCTGGACAACTAGGTCTCCAGATAGTGCACACTCCTCCATCTTCAGAAACCTGAAAGCAAAAAATAA AAGTAAAACAATTGTAAGTAAACCTTGAAACAGTTGATCGTGTGGGTGAATTCTTAAAGTTTCGTCTCAT AAGAATTCTTATTTGACATCTATTGAACCTCAATGACACCGAGAGCAATCAAACGAAAATTACCTGCTTT TTGCACAAAGTACATCGACCTTTGGATTCTCGCTCACTACTCCAGATTTTTGAGAAATTGATACTATGTT TGACAAACTTTCTATCATCTGAGACAGAACTTGAGGAAGAAGAAAGGTCTCTTGATTTTATAATAGCCTT GTTGCTGTACGATTTCGAGTCTCTTCCATCAGCCTCGTTCCAAGCAAAATACACATGTCGCTGGCTTGAA GGAACCTGTGACGAGAAGATATAAAGTGTATTAGGTAGGTGCGTTGCATTCGCACGAGCTTCTCAATGCT TGCCAGTGTTAAACATGTTTATGGTCAAGTCGATATTATTATAACACAGAAGACCAAAACATCTTGAGAA TGGTCATTTCGAATGAAGATCTCCCTTTATTCAAACTCAGTTCATCTGTTTCAAATATTGATCTAATAAC TATGATGAGATAAGGAATAGCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCAC ATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGC ACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCT TTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCACATCCCACATAATCTTGCTG GGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTT AAGACGCTAATGTGAAATGGTATGGTAGTGGGTCTGACCTGTAATAACACAACTCTCTTGTTGGTCACAA TGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATAAAGCGAATTTTGAAGGTTC CCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAACAGA TAACAAACAGAAATCAGAACCAGCTTGGAAGTTTGAGCATGAATGGTAAGCTTGACCAAAAGAATGCAAA TTAATAGCTTTCTGGTAACATTAACAACATAATTATCCTCAAAGGAGACTTAGATGTCAACAATTATATT TAAATAATTCATGCTAGAATAGCCGACTTGTAGTTAGAAATTTTGGATTTGGTCGTAGACTAAAGCTTCC AAAATTTCTCAATATGCAGTCTCACTAATAGACAATAAAAAGAAAGTGAGGCAGTACCTGGCCTGTAGCT TCCTTCTCATCATATTCCCTGAGTATACCATCAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAG CGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAA AAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAAC CCTAAGATACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACAC CCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCCGCCTCGACCAAACCTG ATCCATTTTTCAGCCCTCTATTAGGCAAACTGCCAAAGTAATCAACTTAATTTTGTTGCAAGAAATATGT ACCTGTCTTTCCCTCAGATGTAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAG CCAATGTTGAGCTAGTCATACCCAAAACATCCACTGAGAAAATTAAATGTAAGGGATTGTGGATCAGATC TCTCCATATGCGATTTCCGATGGCTGGAAGTATTGAACTTTTCCGTATGAACCGATCTCTGTGCATTACT CTCCTTAGATGGACCTAAACGTAGATATTTTTTTGAAACATTAGCAACATTCTCGCTCTCTTTTTTCAGC AGTAAATATTCCGAGTATAGCAAAATGATGAATTAGCTTGTGGTGCCAGGAAGTAGAAAGGCTTTCTAGC CACAAGTTGTTCCATGACAATCCAAGTAAAAAAAACTCTCCTATGATGTCGTAAGATCTTCTGAGCTACT TATCCCATGTTGGGAGTCAAAAAGGAACATGACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACA ACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAATCTACCATGAAATGGAACCACGTATCCATAGTTA GTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAGAATGATTGTAGTTCACTATTTCATTTATGGTA ATAACTTCAAAGAAAATCAATTACCTGAATTTTGAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAA ACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCCTTACCTCTGAAA CATCTATGAGGCTGAAAATCAAAAACAAAATTAGGTTTAAAATTTGCTCGATTTGCATGCCAAAATGGCC ATATACTATAAATTTAATCCCCGAAAAATGGTAAAGTTTTATAGAAGGCAAGAATACTTTATATGTATCT CAGGATCAACTTGCGCGACACTAGTACTTTTCGGGAGACGATCCATCTGGAGCTTATTGCAGAAGTCAGC CGAAGCCCAAATGATAGGCTCGTGAATGTTTACTCGCCAAGTATTATCTGTCACCTACCAATCAAATAGC AAATCCATCATGCACTTCAAATAGGATCTCATATGTTTGAGTACATTGAAGATAAACCTGACTAGAATAC ATACCCGTACATATACATATGGATACACTTGAATGCCATCAGTTTCTTCATTACACATAGTAATTGTCAT CTTAAGCACTGGTTGATGACTGTCTCCAGTGTTATCTGGTGCCAGTAGAACTGGCATTAGAGTTAGAGGT AGCTGGTTATCAATCTGTAAATTGCCCAGAATGACTTTGAACCTGTAAACCATAGAAAAGAGTTGCTAGT TCAGATTTCCGAAGGTATTTCATGCGGTTGCATCGCTTCCTAATACGAGAGAACATATGACACTGAAAAA TTTACACGAATGTGCAACCTAAAGACCACAAGTTTTGTTGATAACACCATGTTGCCTAAAATTAGCACAT TTTGATTCGTATTTTCCAAGCATAGGAAAGAACATGAAGTATATTCATATTGTAACCCATTTATACGTAA AAACAGACAAAAAAAACAAAACAATACTGCAATATTTGAGTTTACCTGCTAGTTCTTCCCTCATCATACC CAGTGGAGTAAGATACGAAAACTTTCTCAAGGTAAAAATATGATAACTCTTTTGGCACGTGATCTACAAG AGAGATCCCCACTAGTCCCATTTCAATTATGAACTCCAGAGTGGTGGTCTTTTGTTCTGAAGGTGTCTGA CGAGTAGAATATCTATTATTCCCAACCGATGATAAAGATATGATTTCATGAGGACTCTGTGAAGTACTGT CATCATCAGTGAATCTAGCAATCTTGATGTCACCAATTTCTTTAACATGAAAGTTCACCTCTAAGTCCCT ACACAATTCAGAATCCACAACACCATTTTCCATGTCTAGTCTGAAAACCCCAGAGCGGTGATCATTTTCA ACCTTAGCATCCAAGAATTTCTGACCATAAGGATCTTCCCAAGCAAAATTTACTGTCGTAAGAGGTTCCA ACAAAACCCACGAATCTTCACCAAAACCTGATTGGCGGACACTGATTCTTTTGACAGCTGTTCTATTCTC AACCCTTGTTTAAGAAGTTTAAAACAGAAAAGAAATTAGTAAATTAATGATGGTTTCACAAATATGTATT TACTAATTGTAGAGAGGATACCTCATAGGACCATTGCTTGGTCCAAGTCGAAATACAACAATAAAACGTG ACCCTTCTTCAAATCCCCGTATCTCTGCTTTCAAAAATCTACGAGCACCATTTTGACACCTTAATACAAG AACAATTGTGTCTTCTCGAGCAACTTGAACAGGAAATGACCACTCTGTTTCTCTTAACCGAACCTGAAAA TAGGCCAGAGAATAAAAATTATACATCATTAGATAATAACAGAGATGCTCTTACCTCTCAAATGAAAACA TACGTGGTGGCCAGGAGAAAGCATCCACATGCCAAACAATTTAACAATATAAAACATAATCGATTTGCAT TCAAACTTTAATTCACTGCTCACTTCAAGAAGTGTCACTGGTTTGACTGAGAACATATCATACTACATGC TCCAGTGGACATCCTAAACAACAGCCTTATTCATTTTTTTCTCTCGCAGTTTTGCAACTCATTGACTAAA ACAAAGATAAGAGGAATAAAAATTAAAAAAATTCTGCAACATAAACAGCTCACCTGGAGTTCATCTCTCC CACTTGGTTGGAAAACAAAGGAGACCCGCGAATCATATGCATTGAGTACCTTTGGTTCATCGTCACTGTT AAGTTTAATATATATATCTTCACCGATCCTGTTGGTGAAAGTCATGAATGGTCGAACAGATATGATCTGC GAAGTAAATTCGAGTCAGCAAGTAATAATAGAGAAGGTGTAGAAAATAAACTGCTTATTACCTTTGTAGG AACTGACTGATAACCGCAAGGTTTTGTAGACAGAAATAGCCGCATACATTTTCCATCGGGATCATACGCA TCAACATCCAAAGATCCATCCTATCAAAATAAGTACGAATCATAAGAATGATAGGGGAAGCAAAGCTCAA TTTTAGAGGAAACTAGTCTATCGAACAAATAAAATAGCATACAACTGACCATGTCACCAAGGGCAGAAAG ATCTTTTGCAGGACCATGTTGCTGATTGCCAAACTGAGATATAGACACTGACATGCCCATATGTTTGAAA TTCAAAGTAGAAGCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCAT TTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAG TGTAAGCGAGGGACATCTTGCAATCGAAAACCAGAACGGAGCATAGATTCTGATCATCTTCGTCAAAACT TTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCTGTTCGCATATATTCAACAGTATG AGACCAAATAAACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCA GAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAGCTTCCTGCCAAA TTCGATAAACCAAATAACTAAACAAGGGAGAATAAAAGAAATGGAACAACAATGTGTTCCTAGCTGATGT GAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCAGCAAGGAAAAGTAT AAAGGCTTCCTTATATCGACAGTATGCACCTTCACAGTTTCTCCAGAACCAATGAATTCTCTGCTCTGAG AATGACGAATCAAATCACCATTGTCTTGCTTCTCTAGCACTGAGTACTCAGCTCCAAATGGAAGATAATT TGCTATAGAAAACGGTGATTTGACCACAAGAGTCCAATCCTGAATAGGGTCCGAACGTATATCTTTAGCG ATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACTGCTTATCT GAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATACATATTTCAGACTCTGATTCACAAGC AACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCATCAGTCATTACACAC TTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCCTGACAAGGGAACCGGTAATATATCGCCAGGCT TCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTC AGTATTGTTTTCCACTGAAACTAGAGACCTGACATTTACGTATCTGTTTCCATCCTCCATACTAACTTCA CTTGCAACAACATCATTTCCCAACCGCCAGCAAGCAGCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCC AAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATTTCTTTTCACTTGAGGATTTTCCTTGCTC CACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTTGATCCCCT TGGTTCATGCTCTGCAGAAAACATGAAAAAGGTAAGAAAACTATTGCATTTATCTTTTGCAATCTTTGAA CCCAAAAAGCCGTGACATTTGCATTTTTAATATCATATTTGGACAATGAAGTCTACATAGGCGAAAGGCA TTCAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGT ATTGGTTGTCCTTCATATATCGTGCTACCTGCTTGCAATGGAGCTGAAAATGCGCCAACAGGTGCACCTA ATTTATATACCAAAAATGAAAGAAACACTTAACTCAGATTTAGTAGTGCTTGAGATGTACGACGAAAGAA TGAAGGAAACAAACCATTTCCGACGTCCGACACTATTAATTCCAAGAGATAGTCATCCTGGAAAAATAAA AAACAATAAAATATCAAAGCCGCAATAACCTTGATCTTGAAGACCAAAAAATAACAAAGAGAAAGAAATA CTCTTAATATAATTTATTCTTAAGTTCTTGTACAAGAGAGGTACATGCACCAAGATTAGTAACTAAGATT TGCCAAAGTTATAGCAATGCATAAACTGTTTCAGAATCAATCTGAAGAACACAAGTAGTAGAGATACAAA TGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCC AGCAGTATTCAGGGGATAAAATAAACATTAGGCCAACAAAAGAATGTTAGACATAGTGGAAAAGAGAATA CCAGCGAGTCAATTTTGAAGAAAAATATTTCACTCCAGTCAACGACTTCCAGCTCAGAGGAAAACATATT TGAAACACTTCCACAAGTACGTGCACATTGCTGGCGAAGCACTGGCTCCGTTGGGGAGGTCTGTTTGGGA GAGAGACGTATAACTCCAGTGTATTGATGAGAAGACAATCCAGAAATTCTTGGAAGCTACAAAAAAAGGT TATTCCATATAACACATTCTCCAAAGAGTCTATGAAAAACAAATATCATAAACTTAGTAGAAAGAGTCGC ATGGAGCATCAAATGAAATCACTTCCTTGCTTTATTACCATAGAAAAGTAAAAGAATAGGAAATAAAAGG AGATTCATGAGAGCCTGAGCGGTAGAAGTATATGAATGAAAAGGCATCACGACAAATGTGACCTTTGTTT TAGGCAGAAAGGTACCTGTGCATCCACCACAATAACTGTAACCATTATTCTAGGGTTACTGCATAGTTCT CCTCTGAGGTGAGAATCCAACATATTGGTCAAGACGGGAACTTTTACAGGTCTCATGTCCCCAGATGGCA TCTTTACAATATCTTTAAATCCTTTGATTTCGGTGGGTCTAATATATATATCCTGCCCAAGCTTGTTTTG TGGAATTATGAAATAGGTTTTCTTCTGATGCACCTCAATAACAGATTTTCCATTGTCAACTAGAGGAAAT GCGCCCTGTAAGACGTAGCAAACATAAATCAAGAGAGAAAGAAGACTGCGTCACCATGTGGCACATAGGA ACCAAAGGAGAAGTTCTCACTCTCTCTTTATGGTATTCATGGACGTTGCTAAGGTTGTTCCAACTAGAGT ACGCCTGGATAATTGTATTAGCATTTGAAACTGAGAAATTCACATTCAAGTCCGTTGTAGATGTCAGGCG TAACTCAGAAACCGCACCAAAGGATCTAGGGTTGAACTGGTACCTACAGCCCAATGGAGCGTAGCCATTA TATAGAATATGCTCGACATTAGTTGGAGTAAATAACAAACAAAATAAACAGAGCAAATCACCCGCAGCCA CAGGTGTTTAGACCTACACATTTCTGTAATAATGAGCTTTAAAGTAACACAAAATTAGAACAAAAAAAAC CTTAAGAATCCATCTGCAGGCTCGATGAGAGGCTCCCACGCTTCATACTTATCATTGTATGACCTTGCCG CTAAGGAGAAGTTGATGGTTGACTTTGTGTAGTTGGTTTTGCCAAGTAATCCAAAACATATATTACTCAA AGATACATTAACCAATGGAACCATCTGCAAAGTACATAGATACGCCATTATTTTCACGCAGATAAGTACG CCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCC AATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAAT CTCCTTGGTGGTTTTTTCAAACCACTACGGACGATAAAGGTCTTCAACTCATTGCCTATGCCCCATATAC TAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGC TACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATGCAACA CAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTT TCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAGGATATCTTGCTCACCATCATCACGAAG AACCACACAAGAGTTTGGAGGTTCATACCTACAAATTAACCCCCGAAAGTAATTAACATGCACCTTGCCA CCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAA ATAAGCCATCCCCTCAGTAATGATTGGTCTCCATATTGAAACTTTCTTCTGCGAGCCTGAGCCCCTATTC CACCATATCAACTGAAAGGAAGCAACAGCTTCAAATCGCTGACCAGATCTAACAGAATTCAGTGGCTGTG ACTGTGGCTGTATAGGCTGAATATTATCAGTAGTACGAACATCCACGTAGCTGGATTCTTTTGGCAAGAC TCCAGTGGATCCAAATAATATATGACGTAGCTCGTATGGTCTTCCTGATAAGCTGAGAGAAGACGGATCC GCAGGTAAGAAACTGCCAACAGAATTATCCACCCGCCAGAATGCTAAACTTGATTGAGAACTGCATTGAA TACAAAAGCAAGCCTAAAATGTCAAATCATCAATGAAGGAAGATAAACCACACTGAGGTGACCAGCACAG ACGTACACTGAAGTACTAAAATGGAATCATTTATTAATATTAACCAAAATCTGACAAAAAAAAACAAATG AACAAACAAATTTCTGCATCTGCAAAACCGGATACTACCAACTAAATTCCAGTTCGTTTGAAACAAGCGC ATGAAACCAATATAAATCACATAGACACATGGCAAAACACATACGAAATGTCAGGAAAAACAGACAGTAA GCATGTTGGCACATCTCTACAGAAGGGAACATGCAGCATTGTATCCATGTATTCAGAAAGTGAGCAACAA CTAAAAGTGAGAGGTTCGTTGCAGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACA AGGGGATACGGAAGAAGCTAGAATGCAGAAGACAGAGGCCAGTGGAGGCGGTGTACATCCACTGGATACC ACACAGCTTAACGCCACATAACCCTTTGGTGCTTCAGGGAACCAAATGGAACACAAATTGTCTCTTTCAT CTTTGTCATCCGTTGAAGTATCACCTAACCCGTTGGAAGCTAAAGGTGACCAAATCAATCTGAAAGATAA AGGCCTCTTCACTCTCATCAAATTGGTGTTGACAACAAGAACCCCTTTAGTAGGTGGTTTGTCCCTGCCA TGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGAT GACTAACAATGGTGTCAAATAGTCGCCAAGACTTGCAAAACCAGGAGGCGGATGGGGTCTCCAGAATGCA TATTTTTGATCTGTACAGGGATCTGCATGAAATGTAAGTAAGTACCACGTAACAAACCTTAAATGAACTG AAAAATTTCAGCAATAATTGGACATACTTCTGATGATCCCGACTTTATCAAACTCTGTGCAGACGACAGT CATTTTTCTGGATGTCATCCTTAGAAATGATAAAATGTCTTCTTCAACAGCTATAAACAATCTCAAGATG CTGAATGAGAAGTTCATAAATATGTTTGAAACTGAAAGCTCTATGTTAGTCGTCCCAGAAACACTTGAAT ACTTTACAGAGGTGTCGAACGGTTCCAGAATTTTCACTCCATTACTCTCCATGGTCAGACCCAATGTATG AGCACTCATTTCAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGA TAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTC AGCTCTAACAGTAATATCACGGAGAAGCCATTGACCTGCCATAAGCATCCAGCTGAGCATGCAAAAGTTT GTTGGAGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCC TGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCCATACAAAGA AGAATGTTAGCAACAATAAGAACCTGAAACTCAATGATCATTTCCGTGGACTTCTCCGTTGTGATGCTAG GAGATTGGGAAACCGGATCTTCCTTGCTCTCAGAGTCTTGTTTGGGGACTTTATGATATTCTTCCAACAC AACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGG CCATTCTTGATCATAATAGAAAGAAAAGTGAGAAACTATAAGGACGACAGAAATAATAAAGTTCAGATTT GACAAAGAAATAATGTAAGGACTTCTGTTGTACCTTGAAGATTACATTTCTGAAATGCAACTTTTTTCCA CTTCCCACATATATAACAGGCTCTGTACTGGGAGAAGAAAGGATGCCTCCATGTCTATCTTTCAGGTACA ACGTTCCACCATTACCATCATACACAAAATCATCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGG AGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATTA AGGTTTTTATCCTCTTCACTTGATAGGACACTTACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTA GAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAA TTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTT AATCTCTGATCTCCATCAGTCAGAGAATGTGAGTCACCAAAATCTAAGTCTGCAGGTCTTCCTACAGCAA GTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAAGGAA ACCCTCATCGTGTGTATTGGATTTGTAGAGAAGCCAGCCACCAGAGATCTGTAAACCAAACACGATAGAT TTAAGATGTTAACTCAATGTGCCATGAGATTGTTAACATAAATTTAAGATGTTAACTCTGCTGTAAAATT CCCTTTGAGATTGTAACATAAAATCTCTACGAAGCAACAAACATGAGAAGAAAAAGTGGGAACAAAGAGG GGGAAGAGTAGAGTCCTATAAGAACGATAAAATTGCTGATCCACAGAACTAGAAAGGAATTTAAACAGAA GCCTGATTTGATAATGTCAAAGAGAAATTACAATAAAGCAGAAATCAAATTACTGAAGTCTTTCTGGAGA ACCAATTCCGGACTGAGTCAAGGCCTATTCAAGATTAAACTTCACAAATGCATAGGCCCAAATTCTTAGT CAGAAGTTTGACATCAAACAATATTTGGTCAATCACTTTTATCCCCCAAATCTATCAGCTATGACAGGTC CAAGGGACATAAGAATACTATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCG GACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACAAACACAACTCCACCAGATTGATG ACAACAGAAACCTTCATTGATATCCAAGCATCACTTTTTTCAGTTTGAGCAGCATTAGGATCCTCGGAAG TAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGCGGAAT CTCAGAAATATTAGACTGTGCACACTCTGTCAAGATCTGGTATTCCCTATTCGAGAGGGCTGCTCTTAGT TCGTCTATCTGATAAAGCAGAAATTTAAAGAACGTATGAGTAAGAAAGTATTATGCTACAGACTGGATAT AAGACATTATCCTTTACCTCTACAGAGACTTCAATGCTTGGTATCTGATGCAACAAGTCTCGCAGAGACC TGTTAATGGTTACAGAAACCCCATTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACCAAC ATTAAGGTTGATATCCATGACCTAAGTTAAGGTTGTTTTCGTCAAAAGGTGTAGAAAAAACTAATTGTAC GATAAGGTAGTATGAATTTAAAGTGATATCAACCAGAATGAAATATGCTCAACCCAACAGCCAAACAACG AGAGTTCTCACCATCACTTTCATAGTTTCCATGTGAACTGCATTCAGCTCGTTTTTATCTCCAGCAAACC ACTGAAAGGTATTGTTCACAGTTATATGCACAACATCAAGCTTCAGGTAACTGCAAATAAAAGAAAACCC GAAAAGTAGAGAAAGGTAAATCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATA ACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATCAAAATCCAAGCATGAACTTACTC AGGGCTCTCAGTATGTCGAGGCATAACAATTATAGGCTTCTTAAGAGATAGATCCAACTTAAGAGCAGGA GATCCTTCAATTTCGCTAGTCGTAAACCACTTCTCGGAGTCCGTAATTTGATCCTTCATCTTGACAACCC CTTTTGAATCGCTTGGCACAAGCCCCATAAAGTATTCAGCAACCTACATTGCAGAGACTGATTGTAGGAA GCAAGACAAATTTACTCGCATCTACGTAGAGAGAATAATGAACTACCTCTTGAATAAAGCGATTCAGATA AACAATGCGCACTTCAGAAAGTTGTCCAGAGAGGCAGTAGTCAAAACCTTCATGGTCTTCATCAATGACA CTGAATGATGTAAATGCCAACTAGGAACGGAATCAAAGAAATGAAATTAACACGGAAAAAAACTCATGCA TCTCATCTGCACATCAATTCATATTCAACGAAAAAAAGAAACAAACAACGAATACCTCAACAAAAGAAGT TCCTCCAGGGTCTCGCATATCACAGATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATT CGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTA CGGAATACCTTGGATATTGATAGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAA AAGTATAATCTAACCTTAATATCTGTTAGCAAATTGTCTTGTGACAATGTCGCAAACTTAGTTCCATTCT CATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTT CCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCT CCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGATAGCATTTACAAACT CCAAAATAGCAAGAATTGTTGGCCTCCGGCAGTAAAATGATAATGTGGCTAGGCTTACGGTCACCTACAA TGTGTGAAACATCAGCCACAAAAGATAGTAAGCCTTGACTTTAAAACAACGGAAAAAACTAACATCTCCG GACTGAAAGATGTATAAACAGAAATCTCTTGACCTGATTATCAATATTATTATATTGAGGTGACGTCTGA TGGTATATGACTATTTGAGCCTTAACAAAACTATCCAGAGACTCAATTCTCTCACTGCTTGGCATAGTGA TATTCCTGTTGTCGACAGGGAGCAATCCATCCATTCGACTAAAACTGGGGGTCCTAAGAGATGTATAGTC AACGGAGTCAACCAAGATCTCTGGTGCTTCATAAAATTTTTCCTCCCCTTCGCTAGAAGAAAGATCATTT CCTTCAGGGTTTTTAATCTCAGCATCTTTAAAGGATGGAAGCACCACAGAAGACTGAATAAAAGATCTTG CTAAATAACAAGACTCATTTGAACCAGAACGGCTCACCAAATCTTCTATTTCCAAAGATTTTAGAACAGT CCCAATAAACATATCACTCCCTCTCATCGAGACTTCAACCTGGTTCGACAAAGACAAACAGACATTCATA AAAAGGAATAAGAAATGACAAAGATAATTAAGAAGCAGATCATATACCTTCCCACCTATGGCCCTAAACT CAAACAGTTTACTCTCTCTTGCAAGAAGCACCGCCATGAAGGAAGCATCGTGCTATATTAAAATATACTC AGTCAAAGCATGTCCCATAATAACAACAAGCCGTGGAATTTCACACGCAGAAATAATTTATATTTACCTG TTGACCATAGCTGAAACATATTTTGAGTTCATCAAGCACACCGGTTACATATAAACTCTCCAACTTAGAC AAATCCCAAATATCTTCTTTATGTTCTGTTTCTGATTCCTCACTGTCAGATGACGTATCCGAAAGACCGG CTATGGGAGCAGAACCCTGTACATTAAAGTGAAATTTAAACTTAAATCATCTATATAAACAGGTAGATCA TCAATGGAACTGTCTCATGGTAAGACGTCCTATTGATAACTGGAAGTAAGGTTCAAAATTAAATTTACCG AGGCCCGGTAGACAGCGCTCTGCAAACGGCTGTGCCAAGTCTTTCTAGACTCTTCAGAATCAAACATTAA TATGAGTGCATTCACATCCTCCATAACCTAGAGACCATAAAATTAAAATATTCAGCGCCAAAATTCATTG AAGTTTACAATCAAGATCCTCGAATCCTCATTGATGAACACACAATAAAAACATAAAAGTCATGACCAAA CTCCGCCTGCATTTATTAATTCAACTACATGAGATGTAAACCTTCTCATTGATTCGAGAAGCATTGCGAA TGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGTAAGCT ACAAAAGATACAAATCCTTAGAAATATGACAAATACCAACTAGAACGAACAGATAGAGTTAGGAAAATAT CAAAACAGCTAGTAACTTTAACTGCTGGGTGAAACAGCATAAAGTTTAGGTAATGAATTCTTACACTAGA TTTATGAACCTAGATAACTGGACTTTTAGTGGGTCTTTAGTTAGACAAGGAAACTTAATAAGCCCCTTAA ATAGCACAACCGAGAGAAATTCATTTCTTCCGTGTCTTTTTCACCTTGACTTCACTAGTTATATAATACA ATGCATAGCATTGGTTTAATTTACAAATGGCTACGATAACATAAACATTGAGCAAAAAAGGCAGTCTTGC CATAGTCTTTCCACATGTCAATCCTCGTATCTTATTCATTGTAAACACACGCAAACATTACATATAAGAG TACTGCACTTCATCGAGTTTGTACAGACCATCCATTTTATCTAAAGTCTAATCTATAAAGCCTCATCCAT TTTATCTAAAGTCTAATCTATAAAGCCTATCACTACTATAACGAAATTGCAAGAGTTCGAATCATACCTG GTATACTGCTTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGT ACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAATAAATAAATAGTGTCCAA GAAGATAAGAGAGCTTGCAACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGT AAAGACAACCAACCCTCAAAATCAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAG TTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGTGAGAAGTGAAAACCAAGTGACGG TAGCCGCACGGCAAGTCTGGTTGACGGGTACGATGGGTTTGGCCTACGAATCTACAAACCAAAACAGGAA ACAATAGTGCTAAATATCTACAGTTTGAAGCATAACTCTTTTACCAAAAATGTCTATGCCAGATGTCCAG AATTTTACCTGTTGTAGTTTTAAGAGTACCCCACACTTGTCAATAACTGGCAAGAAAGTAACACTGCTTT CCTTACCAGAAGATTTTTTCGAGGATAACTGTTTCCAGGAGTAGTCACCATCAACAAGTAATGCGGACAC ATCACTCAAAACTAAATCAAACTGTAGATACATATCCATTTCCTCTGACAGTTCACGCTTATAGTCGTCC TGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCATATTGTTAAAAAAGT TGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT AGAACGATGGTTATCAGGACGAAATTCGGTTGGAATTGTGATTTTGGGTGCTGCAATGTCTAAGTCGAGC AGAAACCTGGTTGTTTTGTAAAACGTCATTTACTAAAACAAGCATGGGCATAAATTTGACCACGAGCTCA TGAGAGTACGAACAGACCTTGCATGATCTTTCAATGCTCTATTCATTCCTTGTTGAGCAGTGCGTCTAAC TTCATCAATAGTTGACTGAGACGGTAAGCAAGTGAATTATAATGATTAAAGTGGCTCCCACGGGCAGTTG AATATAAGTAAGGAACAGAAATCTAATTCGAACAATTTTTGAATACACTGCAAGGATCAAGCTCTACAAA TTGGAAAGTTCGAGCAGAAATACTGACAAAAAACAGAAATGCATACTTACTAGATCCCATATTACCATTC CTTAGATTAGATATACAGTTAATAATGAGATTACAATTACCAGGCTATATAAAACCAATATGCACTCATT TTTGTCAACTTTTCACACCACGGCAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATT GTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAATTCCATCAATAGAGTCCTTCAGATACTGCA GGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATACAAAATTTTCTTAGAGAGAGGGG CACGCACAGTCATATAACACGGAGAAGCTTTTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTT ATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGCACTCTGCAAGAGAAGAGACATTTTTAAGGGA TTTTAAGAAATCACTGACAATGTTCTGTAGCCTGAAGAAAACAAATTCCACCTAACAAACCTCAGCAAGC GGGCCATTTGGCGATGACAAGCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCT TAATGGAGCAATTAAGATCTTCACATGATAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGA AGCATTACGCCTCATGTGTACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGAC TGCTCATCACCTTCTTTGTACCCTATGACTTTATTTAACCGTTCCCAATCTTCATCGGTGAATTGAACAG ATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATACAAAATACTTTAGAAAAAAATTG GGAGAAGGAGTTGGGAATTTGGAAGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTT AGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTT CATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTACTTTCGACATCCTA CTCATGTATTGACAATGAAAAGAAAACAGAGAAGCATCATAGGTACAAATAGAGAAAGAAATAACGAATT AGTCCTAATGAAAATTTATAGAACTACACAAGACCAAACGTTTGAGAAAGCTAATTGATCTGCTAAGATG CAACTAAACAATAATATTTTACCTCCATTGCAAAATGACTTCGGTATCAAGTCCCCGATCAAGGGCCTTG ATTTCTTCATCATCATCAACCACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGT ATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGGTAACA ATCTCAGAAAACGTAAACAGAAGAGAAGTGAAGTTAGGAACCGCAAGGAAACGGTTTCCAAAACGAATGC AAATTATAGAGAAATACGGCAGTAGCAAGACGACAGAAATGAATATCTCTAATTCGATACCTTGCTATCT TAATTTGTTCTGAAACAACTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGA TGGACGGTAATGTGCATATTTCAAACGCTGATTAAACGCAGAAAAATTATCAGCAAGTTTCATGACATCC CTGTATCCTCCCTGAGACAAAAAAAACACACACACACACAATCTAGACCTCCGCAGACATCCAAATAAAA AAAGAAAGAGCAGGAGCCTCAAATTTTGGCTTAACCTTTGATAAACAAAGTGTCACATCGTCCAAGTTAA CATATGCCTTCTGCAAAGGTTGATCAGTATTGGAAGAACCATTTGCTTGGGACTTAATGTACTTTGCATT CCCTGAGACAGGTTGCAGAATATAGAAATGTTTTCTCGTTAGGTCTTCAGCTGGCTTACCATCTTTGGTT CCGTATCTAAAAATCTAGAAATATGCATGCACCAAAAAATTAGATTTTGGGGTAAGAGACAAATTATGTT CCACTATATACATAACTTCGCTTATGAATACCTGATCCCACTCAGAAGGAAGTAAATCCTCCCATGGTTT GTCAATATACCACGGAGACATGTCAGAATCAAGATAGAATGCAAGCCGATCAAGTTCAACAGACTGCACA AAGGCAAACATAATTATAACAGGAATGTAAAGTGCCTTTGTTTTCTTTCTTGGCAGGGGTGATCCTTTCA CCATGCAATTAATCCATATATGAATTCCACATAAAGTTTTTCTCTATATCACTAACCCTTCCGGAGAGCA CCCTAAGTCAATCTTCCTCGGGTGCTTCTTACTATACCCACATAACTATTTGAACTAGATTATTAAAAAC AAACTACCTAGCTACTTACTACAAGCAAGCATAAGCGCAAGAGATCTGAACACAACACCTTCCCAAAAGT ATAAAACCGAGGGACAGAGACCTTTATAAAATGTTTTCCATAAGACCAGAAAAGCTTGTGCCAGACAGAT ATTAATGAGCAAATTTATACCTTTTGGATGGAAGCCAGAGTGCCGCCAGTAATAAAGGTCTCCTTCCCAT TCTCATCAACTGTTACAGCTAAGAGTTTTTCTAGTGTAAAACCAGCTGAAAATGGGTGGCCGGGATTGCT GCACTTATAATGTAAGCTTTAATCACAATGGGAAGACAATCAAAAACAAGAAGAAAAAAATTGTCATATT CTATTTACCTCTCTAGATCCTCGTATCTTATGTGAATATTTGATATTGACAGCTTCAAGTTTCCCATGAC TGTGTCGACCAATGATCCTACCCATGATTTGTTCTTATAAGAGAACAAGAAAAATATGGTAGTTAGTTTA ATACAATATTTCTGAACACACACTATCTACTTTGATGAGTAGCACTAGCCACACCATTTCCGTATGTAGT CGACGAGCTCTTTCTACTAGTTTTGTTTCCATTTCCTGTATATTGCAAACATAAAAGTGATTCAATGACT CAAATCAGATAATGAAAACAATCATAACATGAGCGACCTATCTCACCAGTATTAGCTTTCTTTTTTTCTC TTGGATAGAATCCTCACTACATCCTTCAACATCAGTTGCGGGTTCGGCTAATAAAAAAATTCGATCAAGA TAAACCACTACAGGTTCCTGGCCAAGCCTGCTCCATGGTACCTAAAATGATTTGAAACGTATCAGTAAAT GGGTGTAACCGAGTGTAGAAAAATCTGTAAACAGGAAGGTAAAAGACCCCTGCCCAGAAAAAAAATCGAT ATCACCCGGAAAAAAATGTATGATATTGCGTCACTTACAGAGACTACAACAGCAGTTGAAATACAATTTG TGAGCAAATGTGTAGAAAAACGGGAAGAAAATGAACGCACTCAAGCAGACATACTTTAGCTTTAGATACA ACAGACAGAAGAAAAAAACACAACACACCTTGAGTTTGACTGATCCAAGAAATCCAGCTTTAACCTTGAC AGGTAATTTCAAAGCGTTAAGTGCTTCTGGTTTTAGTTGCATATTCTTCAGCTCCACATCCCCTGCGAAA TTAAGTAGAACCAAGAGCTAATTAACAAATGAGAAAACTAAAAGTCCTTCCTTTTATTCAGTCGATCTGT TCTTAGTAACAAATGGGAAAACCAACTAAGCATTTACGAAGTGAACAATCAATGTAAACGATGAAGAAAG CAAGCAAGCCGATATTCTCCATCATCTTTGAAGAGTTCCAACCAACTAAACCCCAAAAAATCACAAAATC TGAACTTTACTCCCACCCTTCTTCCAAAATCAAAGAAGACTTTGCCGTTTAGCTATACGAATATTACAGC TCTTTATCCAACTACAACACAACACAAAACCTAAATTCGCTACTGAATATCACAGAAGAAACCAATCTGA CCTTGCCAGACACTGATCTTAAGGGCTTCCTTACTCAATCCCCTGACGTAGTTCCCCAAGTACCGCTGTA ACAAGTAGGCTACTTGATCTTCCAACATCTTCGTATCCTACAAATCAAAAACTGGGAAAAACAAAATCAA GAAATCTATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTA GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTA GGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACGGCTCCGTTAAAAAGGAATAT TAAAAATATCCTCTCCGATTCTTGGCGGTGCTGCTTATCAATTGTTGCCTAAACAAGAAAATTAAAACAT TTTTAATTCCATATATGTACAAAATCTATTTGGGAAATATCTAGGATATCACTAAAATTTTTTTATCACA AATATAGACTTTAATGATCAAAATGTTTCATTCAAGAAATTATATCCTTATACCCTAAGGATTAACTAAT CCAAATTTTAAGATTTAAAATCAAAGAGTGGGATTTGGGTTTGAGATTTAAAAATTTTATAAAACAGAAA ATAAATATTAAAATTTTGAAAATAAAATTTTTTAAAATAGTTTCAAAAATTATTTTCGAATTACAAAAAA AAAATTTGCCAAAAAAAATTAAAAACAAAATTCCAAAAGACAAATTCCAAAAAAAAAAATTATAAAAAGT TCGAATTTGAAAACCTATAATCTAAAACAATAAAAAAATTTATTTTTTATTTATTTTATTTTTATATATC TAGGGTATTAGTATCCTTTTACCTATTAAATGAAACATTTTGGTCATTTTCTTCCTTGTGATCTATTTTT GTGACCAAAACTTGAAAATAGTCTATTTATGAGAATTGCCCAATATATTTTGCCATCATACATTTAAATT TACAAAAAAATATTCTGAATATTTTTTAAATATTATGAACATTAAAATTAAATTAAGAGAAATTCCATTG GATAGCCATTTTTAGTTTATTTTCACAAAATAGTCTATCAATGAGGAAAATGACCAAAATAAATTTTATT AAACGGTAAAATATGAATTTATACCCCTTGAGTTAACTAAACTTAGGATTAAGAGTTAAGGGGTGGATTT TGGGAATGCGTTTCAAATTTAAAAAAATTTAAAATTAAAATTTTCAAAACAAAAATGGGTTATTATGGTC ATTTTATTTATTTAAGGCTATTTGTGATAAAAACTTAAAAAGCCTATTTGAGAGAATTGGCCTTAAATTA ATATAAACTAGGTGTTTTATCTGTACATGCAGATATAATTCTTTTATAGATAATTATTAATAAGTGTATT ATTAGTTTATAGATCAAAAAATAAAATAAAGGGGTAAACATTATATTTATATTTTTTATGAATCTTTAAA TTTCTTAATTTAAATTTTTATTGATTTAAAACATTATTTTAGATAACAACATTAATATTTTATTTTAAAA TATGCTGTTATTTTTAACCAATTTTTATTATATTAATTTATATATAATGATCTAATTAAATAAACAAATA TATAATTGTTAATACAAAGTGATGTTGTTAAACTAAATTTTTGAAATTACCAAAACCTACAAAATTTCAA AATAAATCAAAAGCACAAAAATGTTAAACCGAACCCAATTTTACATATTATATTAATCAAAGTAAATAAA ACTATGGATATATGTATAGTTATATTGTAAAGTATCTTCCATAATAACTCAAGGGAAATTACACCCCATA TACTAGACTTTTACCATAATTAACCAAATATCATAAATCCCACAATATTATACCTTTCTCTATAGACACA AACTAGTCACATCATAGGTATTTTCAATTTTTTAGGGTTTTAAACCAATTCACCCATAACTAAATAAACA TTCAAACAGATGAATCATGTTGTCAAACAAAATATTAATATTGTATAAGACAAAAACATTTCCAATCTAT TTTTATTTTCATTTCTAAATATTATAGTAGAGAAAAATAAGATATAGTCAATCTATATTTTTTACTTTAA AGTATATATTGCTATTTCCCTATAAATTATTATTCCTCTTATTATAAAATTATAATTTGTTATTTTCAAA TGGTCTTTTAACTTTAAAACTTTGATAATTATAAATAAGACTATCATTTTAGAAAATACAGTTTTGATAA TATAAAAATCACATTTTTCTTTACTTTATAGTCTCTTAAAGAAATTTTAATCTAAAAAGTTATAATTCTC TGAAACTCTTGAAAAAAAATAAAAGTAAACAGAGTTAATTTTAAATTTTTATAAATATAAGATACTTGTT GTAATATAAAATTAATATTTTGAAAATATTCTCTTTTGGAAGCAGATATTTTGAAACTATTTAAAAAGGA TAATTACATTCCCAATTAAAAAAATATTTAGAACAACAAAAACAAATAAATATTAATTTTCAACTTAAAT AACAAATAAATGTTATTCTTGCAACTGAATAATAAGAATAAAAATAAAAATACCAAAAAATCACGTTAAC AAACAAATATAAATCAAATTTTTGTTATTGGTTACATACCTATTTTAGTGCTAAAATAAATTTCATATTT AAAAAAATATGACATGACATATTACGTCTACAAACAAATATAAATATATTTTTCTTCATAAAACTATTTT TTATTATTTTAATATAATGAAAAATCAAATTATGTGTATATATACTACCTAATTATAAAAATTAATAAAT AAGAAAGAAAGATGTATATAAACACAAAATAAATACATGGAATTATCTTTTCTTTTTCCAAACATGTTCT CCATTTATTTTCTGAGATAATTTTTATAATATTAATTTGTAATCAGTTAAATAATGAATTATATAGTTAT GTATTAAAACTTTAATCAGTCTAATTAAAATGTATTATTAAAACTAATGGCTCAGATTAAAATCAAGGAG TACATGACAAATAAACAAAAAGCAAATTCACTTCTCAAATAATAGTATAGATTATAAAAATAATATTTTG ATGAATTTTCAATCAATAATTTTATGTGTGTCACAAAAATTAAAAATACATATCCGATATTTTTATTCAT ATGATGTTAAAAGTTATAAAACTTTTTCATTAATCCATGTGTGGAGAGTAAAGAGTTACTTCACAGTTTT CCAGTATATTAAGCTAAGTAAAATGATCAAACTGTAAGTTTTCATTCTTCGAAATTGTATCTTCCATTAT GATTATATAATACATTTATATAAAAATTCTTTTAATCAACAAAATAAATGTTTTACACCCAAAAAAAAAA ATGTTAGACGGAAAAAATATATGATTCGAATTTCAAATTACTTTATATAGACTAACTTTTAATAACTATC AAATTTCTAAGCTAAAATTATTTTCAAATTATTTTTAACTTTATCATGTTATTTTATTATATCTGAACCC AAACAAAATAAAATATGCTTATGGTTCAGACCAAGACTGAAAATCATAGTCCATAAGTCAATGCCTTATA TTAACGTTGAAGAGGAAACGCACACATTTGCACGTGTATAACTGCACGCTGTAACGCTTCAGATCCAATT GTTGTGGGCCTGTGTACAGTGTGGTTTCATTAACTTGTTCTTGGGTACATGCCACATGGTACATTCTGTT TTTTTTTTTTTTTTTTTTTTTTTTATAATAAGTACTTATATTATAAAATCTGCCCGAAGAATCGGGAATC AGATACGGTTACAAGCTTGTTTTGAACAAAATGTCAAAATCTAACTATTACAAGCCTAGCTTCGCCCACC CACTAAACCCGGCACGTTCCGCTAAGTTGTTTTTCGAAGTCATTCGATATCGGTAGCCGTTCTTGATGTT AGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATC AAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATG ACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGG GATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGC CTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCAAA TGTCTTTGGTTGAATAATATGAAAGCAATCATTACTAACAAGTCTATTAGCTATCTTAGCACCTTTAACA ACAAATGTCTTTGGCAAAGTATACTAAAAGCCTAGGAGAGTTGTCTCGAGCATTTCATCGAACACCTTTC GGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATGATTACTCTACTAG CAAGGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCCTTAAAAAAAACCTCCCTAGCTC CTTAACTAAATCACCCCTTAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGA TTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACAC AAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCC AAAAGATCCAAGATCATCTGCCTCTGGTGGCTACAAAAGATGTTTAAAACATAGGTTTTTCCAAGTGCAA AACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCG ACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAG CGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCCAGGCTTC GCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA GTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGAC TTGGTGGTGTCGCTCCGGACTGGTCACTCCATGCCTTGCTCGCCCAATGACCACTCTAAACACTCCTTTT TTAGCTCCAAATGCATCCAAATGTCTCCAGAAACTCCATGTGGTACTCAAATACCTGATAGAGACATATG TATGCAAAATGCAACCTAAACATGTCTAAATCCTAATCTATATGATGAAAATGTTTATGAATGAATGGAT AAAACAATGTAAATATGCAAGATATCAGTTCTCAACCATCAACATAATTCTCGGGAATGTGAGGTTCTCC TTGTTTCCTTGGATGCCGGGAGTTCCCTTAACGTTTCCGGAGTAGCTAGTTTCCGATGATCTCCACAAAG CTCATAACTTTCTCTGTCAATGAAGCTCAAGACAGCCAAAGGGGAGAGTTCAAGTACATACCAATGCCTT GCTAATGCCACCAAAGCCGGGATGAATGAAGCGCCACACGACGCCTGAACCGATTCCCAAAACGAGTAAG CACTCGCTTCAGCCATCAACGAAACCTGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAG TCCCTAAAACCTGCAAGAAAGTCAGCTACACCACCATAGAACACTACGGCGCCGGGATGTGAGCATTGAC GAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGCATCCATGGCCTTTGAGAACCAA AGGACCAATTCCTTGACTGCTAACACTTCATCCCTTGAGCCAAAGGAATGATACAACAATTAAGTCCAAG AGACTTAAACTCCTCAAGAGAAGCCGTCGCTAAACTCCCGGAGAAAAAACTAAACAGGACACCGGGAATG AGAGTTCCGAAAGAGTTGTGGTGCGTCTTGAAACCTCCTTATGGCCATAGACGACCCATCAAAACGTAAC CAGAAACACACACACGAGGAATCAAGCAGGACACTTTCACCACGATTACATCCGCTGTCAACCTAGCCTC CAACACCAATACAGTACCGGAGCACTCTTGATAACGGCGAATGGGTACCAGAATCTCTTCGACCCGAAGA AACCCTAAGCAACCACCACCATTACCGAACAAGCACGGGACACAGGATCTACAGCAGCGAACCACCACGA GCCCAGCCGTGACAAGACCCAGCGCTGTCACTCCACGACGACAAACACCGGAGAGATCCGAAGAGAGAAA AATGAATCACTCCAAAACCCAAAAAAACCGACTCTAAACCGCTCAGCCTCGCTGTACTCTCGCCGCAGGT CCGGAGAAGGAACCACCTCGACCAGAATCAGCTCCTCGCGACTGAAGCTTCCGCCAGTCTCTGCGAGCTC CATCCTAGAAACGCGAGCATATCGAGCAAAGGATGACAGATGCGATCGAGAGCAAAGGTGAAAACAAGGA AAGGGGAGAAGAGACCCCTCCGGCCCCGGCACTCGCGCGGACGCGCCGGCCGTACGCCGGAGGGTGAGAT GCACGCGTCTGTGTTGTTGTTTGTCGAGAGAGAGTTTGTCGGTAGAGGAGAGAGAGTTCCAACTAATTCT GATATCAGATCACATTCTGTTTTTTTTTGTCATAAGGAGTTTTAATTTCACTAGTAATTTGGATTAGTTT TGCATTTGTTCAAATTGGAATATACCTTTTTGTTTAAAATCAAGTTATGAATCATATTTGACAATTTCCT TAAAAAAGTTAGGTACAAAGGAATGTTTATGTTTCAATAAGAGATGTGAAACTTGCATTCTTTATTTATC CCAACATAAATCACTTAACTTTTGTCACATTTTCTAACGAGCATTGTAGTTTAAACTCTTTTGTGTTTCA AAAAACAAAACAAAAAAACAAAAACTCTTTGTACTATCTTAGTTTTAGTATACACTAACTAAGTGGTTCT TACATGTTGGATAAATATACTTGTTGAAGTACAAGAGTGTCTTTCTAACTCCATGATATGAAACTACAAA TACTCCACATATGACAGATGTGTGTGCAATGTTTTGCTCTTTAGGAAGAGAGTTTTCAAAAGTATGATCC CACTTAGCTGATTTTAGACTTAGCTCAAAGACTATTAACGTTCTTGGTTGTTTTCCTTAGTTTTTTTTTT AGGTTTAGAGTTTGCTATGGCTGATTACAAATTACTTTGCAAGCTCACTTCCTATTTTCATTCTTTTTAT TAGTCTGGTTTGCAGTAGATTTTTCCGTTTGATTTATCTTCAAAATCTTGTTTTTATACACTGCAAATCT TACATATGCATCGTTCTCTTCATCTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGATCT TTTTTTCAAATCATATATAATCTGATATTCGTTCCACTATAACATGAAGGATATTAATGACGTATGCAAC CTCTCTTGCACCAATATCAGCTTCACATGTCATAACTTCGGTATATCTTCGAGTCGGAACCACTATGCCA TCATTTTGTCTAAGTTGGTGATTTAACAGTGTTACTAGATCTTGACACGCGCAACCATGCGCGTTTTATT GTAAGTTTTATATGCATATATATATTTACTTTAGATAATTAGTGGTATACATTTTCAATTTTAATCATAT ACTTAAATGTTTTTATAACTATTTCAAATACAATAATTTATAGTTTACATGTTGTAAATAATTGATTGTT TAAAATCTTCACATGTATTTGTTGTTTTTATTATATATTTACCGTATTGTATTTGCATTTAATTATTAAA CAAAATAATATGTGCATGAAAAAAATCATCTTTGAAAATTATTTTGTATTTAATTTATGTTTTATTTTTA CCCCCCCCCCCCTCGAAATGGATTTCTTTTTTTGCAATATTTCTTACGTTTATTCATTTTACATAATATA TTATTGTATATACAAAAATCTAAGATATGTTAATTTTTAATCATGTATTATATAGTATGCTAATGTTAAG ACGTTATGTCATCATATTAGATTTTTAACATAAATATGAAAATAAAATTTATCAATTTAATATAATTTAT GATATTTAGTTCAATATAATAATTTAACATGATTGATTATGATTATAAAATAGATAAAGTAAGACATAAT TTCTATCTTTAATTTTATAAACAATAACTGAATATATATATATATTAATGCATAATAATAGTTCATTGCT AATTACGAAATTAGTGAAAATATTTATATAAACTTTTTGAAAATTAAGATATTGTTAAAATATTCAGATC AACATAATAAATTTTTTTAATATGATTGATTGTGATGATATAATAGATAAAAATATGATAAAATATTTAT TTTTCATTTTATAAACGATAACTGAATATATTAATGTATAATAATTTTGAAAATTAAGATTTTTTAAAAA TATTTTTAAACAGACTTTCAAAAATTTAATATATATATATATATGTATATATATATATTAAATGAAAAGA TATCAACAGATATTATGATTAAATTAGTTCAAAAATTTTATATATTATTAGTCCTATTAAAATACATATA ATCTGTTTTAAAAGATTAATTTTTTAACAAAATAAATTCTGAACGAAAAATATCATGGATAAATGTAGTT GCCGAAGTACAAGAGTGTCTTTCAACTCCATGATAGGGAACTACAAATACTCCACATATGACAGGTATGT GTGCAATGTTTCCTCTTTAGGAAGAGAGTTTTCTAGGATATGATTCCACTTTATAGCTGATTTTAGACTT AGCTCAAAGACTATTAATGTTCTTGGATGCTCGCCTTAGTCTTTTTAGGTTCAGAGTTTGTTGTGGCTGA TTACTAATTACTTTGCAAGTTTACTTCCTACTTGCATTCTTTTTATTAGTCTGGTTTGCAGTAGATTTTT TTCGTTTGATTTATCTTCAAAATCTTCTTTTTATACACTGCAAATCTTACATATACATCGTTCTCTTCGT CTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGAAATTTTTTAAAAATCATATATAATCC AATATCCGTTCCTCTATAACATGAAGGATATTAATGACGTATGCAGTCTCTCGTGCACCAATATCAGCTT CACATGTCATAACTTCGGTATATCTTCGAGTGGAACCACATGCCATCATTTTGTCTAAGTTGGTGATTTA ACAGTGTTATCCTTAAGAGTTAAAATGACAAGTTGTGTAAAAGAGGTGTGGATTTGCCAAATTATATAAT ACAATTCTACGGTTTTAGAATAAACTCGTTTAGTGAAATAATAATAATAATAATAATAATATTTTTTTAT GATCTAGTCTTATGTATTTGATCGCATACACAAAAACATAAAATTGTTTATAAGCTATTCGAATAAATTT TGATGTTTTTATATTTTTATATTCTCATTTCGGCAGATTTTTGGAGCAATCACAATTTCCTTCCTCTGAG ATAGGATAAATTTTAAAGTTCTGGCCGACTTAACAATGAACACATGATAAACACAAACAAATCAGATTCG AAGTTACGAGTGTACTTTGTGGTCTTTGAAGTGGTATCTACTTTCAGCAAATTCCTGGAGCAATATCTTT TAATGTTTTGGCTATCTAAACAATGAACACAATCCAATTTGAAAATTATCATTAGGCTTTTTTCGTGCTT GAATCTCAGCTTCTGTTTTTTTTCTCAGATCACTCAATGGCTAAAGATAGTTCACAAAAAATTGTGAGGG TATTTCGATTTAAAATTAGCTACGGCTGGTAAGAGATGACTGAGTTGGGCTGCATTTACCAAAGTCAAGA ACAAATCCATTGTGATTCTCATGCGGAGGTAGTCAGAGATAGTGCTCAAGAATGCACAACTTATCTGCCA AAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATT TTTGTTATAACTAAAAATGAAATTCAAATTTATAATTAAAATTGATTTGATATTAATATCTTTTTGATTA TTAATATTTTTTAAAATGTTATATATTTGATTGATTAATTTAAATAATCAAATATGTCATATTAATTAAT TAAATAGTTCTACTATGACTTGTCAACAATAGATAAAAATAGAAATTCTATTTAAGTGAAATAATAATAA TAATTTCTTTCATTTATGACTTATCAACAATAGATAAAAGGGCAATTCTCTCAAATAGATTTTTTTTTTT AATTTGTCACAAAAATAGACCCCAAAAACTAAAATGACAAAAATAGAATTTTTTATTTTAAAAATTTAAT TTTTTTTAATTTTTAAAATTTGAAATCTTATCCCCAAAACCCCACTCCTCAACTCTAAACTCTAAACCCT AAATCTTAAACCCTAAACTCCACTCCTTTACTTTAAACCCTAATGTCTAGATTAATTAACCCTAAGAGTA TAAGTGTATATTTACTTCTTTTGATAAAACATTTATAATTAATTAATTAATTAAATAGTAGATTCTTTAG AATTAAAATGACAAGGTGTAGAAAAAGGTAGAATCGCCAAGTTATATACTAATTCTATGTTTTTTTAGAA TAAACTCGTTTAGTGAAATAATAATAATAATTTCTTTCATTTATGATCCAGTCTTGTGTTTTGAGCGCAT ACACAAAAACAAAAAAATTGCTCATGAACTACTCAAATAGATTTTGATGTCTTTTTTTTTTTTTTTGCTA AATAGATTTTGATGTTTTTATATTTTTATATTCTTTTATAAATGCTCTGACGCATAAATCCGGTGTTCAT GAGTTTAGTTTAGGGCCAGCTGATTTTATCTGCAAGAAGAATTATTTTGGAGCTATATATTTGGTAACTG TGAAATACGATTTAGATGGTTATCTCACAACTCAAATATAACAAATTTGACCTACCATCTAGATGATTAT TACATGATGCTTAAAATGAAGTATATTTGATTGTTAGACGTCACATTAATATCACCCCTAAACTTTAAAA AGATTAGATACTTTCTTAATTTGATTAACATTTACAGAGCAAGAGACATGTCCATATATCACTGTCACTT AGTGAGCTGGAGAGGAAAGGAGCAGCAACCTGACGAGGACTTTTCCTAAACACATAATCTAAGCTTTACA GATCCACACATCACTCATGATGAGCTGGAGACGAAAGGCACGCATTAGTGGCAGTGACCAGAAGGACCCG TGTTCGAACTCCCTCAAAATAAACATCGTTTCTTTGTTACTTTCTCGACAACATCTCGAGATCTGAAACC TGATCCCTACCTTTTTCATTTCCCCTTCTCAAAAGTCGCGGCCTTTGAATAGTGTTCCTCTCTCATCAAA TCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAGCTTTCTT CTTTCTTTCTTTTTTTAATCCCTTCCAGCTAGTAATACCGTAGTAGGTAACTTTTGGGTGGTCTTACTTG CTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCTCAGAAGCTTATATG GGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCTCTTGCTGAAGACGAAGCAATG TGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGTACTTGGAGGACTCAAGA TGATTGACCAGTTCATCAACTTTGTTATTCGCCCTCCCAGGTACCTTTTGCTTCTCTAAAGTCTCAACCT TTTCTTGCATTCAACTGATTGGTAGCTGTTGGAACAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGA GAAGGACTTTAGCATCGGTGGCACAAAGTGTAAAAGGCAAGACTTGGAGGCAAGTATGATGTGCAAAACC AGTTACTGTTCTCTTCAATTAGTGGTTTCCTCATGTGGCTAATCTTAAAGGTCTTATGTTTTTTCTCTGA AGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAA TACTACTCCTCTTCCTTGCGTTATATACTGCCATGGTAATAGGTACATAACTAAAGACTTTGCACACTCC TCTTCTTGGGAATGAATATTTGATGAATAAGAACTTCCATTTGATCAGTGGATGTAGGGCAGATGCAAAT GAGGCAGCAATGGTTCTTCTTCCATCTAACATTACTGTTTTCACACTTGACTTCTCCGGTTCTGGCTTAT CTGATGGTGATTATGTTAGCCTTGGCTGGCATGAGGTGTGTTTTCCTTGTTCTTACTTACTTCCATAGCC TTCTCTTTCTCTTCCAAATAGTTACACTAACCTTTTGCCTGTTAAACTTAAGCTAGAAAGATGATCTCAA GACTGTGGTTTCTTACCTGAGAAGCAGCAATCAGGTGTCTCGTATTGGACTTTGGGGACGGTCTATGGGT GCAGTTACCAGGTTACTTCTTGAACTAGCTCTTAATGTCTCATCAGCTTTCTTAATGTCTGTGATCTGGA ATGTGTTCCTTGTGTGGCTCTCTTCATCATTTAATGAAGTTGTTAATGAAATGTGCAGCCTTCTCTATGG AGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACAGTGCATTCTCAAACTTATTTGATCTTATGATG GAACTAGTGGATGTTTACAAGATCAGACTTCCTAAATTCACAGTATGCTCTCTTTTTCCCCCAAGTCATA TTCTTCATTGCTTATATCTTCACATGGCTACAAGAGTCCAAGAAGATAGTTCCCTCTCTTATCCCTTCCA ATGATGATAGCATACTGTAGACATTCTGAAACTCTTATCTCACTTTTCAATCAGGTTAAAGTGGCTGTAC AGTACATGCGGCGAGTAATTCAGAAAAAGGCCAAGTTTAATATCATGGATCTCAATTGTCTCAAGGTGTT ATTTAGTTACCTCTTTCTATATTCTTATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATT TCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGCGGAGACAAATTC ATCCAACCTCATCACTCTGACCACATTCTCAAGTGCTATGCGGTTAGATCAAAGTTGCTATCTTTTTTGC ATTCATGTCAGTGTTGTTTTTAATGTTATGTAGTAATCTTATAATGCAGGGAGACAAAAACATCATCAAG TTTGATGGTGATCACAACTCCTCACGGCCGCAGTTTTATTATGATTCAGTGTTAATATTCTTCTACAATG TTCTACGCCCGCCTCAAGTTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATAGCGCTGCTGGTTTGGA CGAGGTAGTTTGCACTCCTCCTCTGGATCAAGCAATCCAAATATCATGTCTGTTTATATGTCTACACTTA GATAGTATATAAACATAAAGATCTTGCCTAGACATTCTACTCGAGTCACTTACAAGGTAGCTCAAAATAG ATGAGGGTTAAGAACTTGTGGTCACACAGCATTATGGATTAATCTCAATTACAGTTAGCATGGTGAAATA TGATGCACATGAATCTAACTGCTTGGTTTTTCCTTGTACTGCCAGAATTTTCTGTATGAGATCATCTCTG GGCTTCGTTCGGCATGTATCGATGTTGCAAGTTCTTCTTCTTCTGCACCTCCTGCCTCTCTAACAACAAA GCCAACAAATGAGCTCATCTCAGAAGCCATGCCCATTATGGATACTGTATATTTTCTGTTGCATGAATTT TTATTTTCTTTTGCTTTGATTATTCCTTTTGATAAATCAAATCATTAATGAAACAGGATGACTTGCTTGT AGCAGACAATGATCAGAACATTGATGAACCTGAGGTAACTGGAGCATGTGGAAACACACAATTAATATAT ATATATATATATGATGACTTAGAGCTCCTTTTAAATGGAGTCCCTCAAGTGTTAGCCTTTATGAACCTTG CTGACATTATAGGTTTTGACTGTTGTTATTTGGCAGGGGATGCCTATTGATCAGTTTGAAGAAGGATGTT CATTCACAAGCTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAG CTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCT GATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAACACAGAACAGAAGCCAATAGAGTCCACTAGA CAACAAGAAGAAGAAGAAAAAGAAGAGAGGAAGGAGAAGAAAATGAAGAAAGGAGTTGAAACAGATGCAA AGAAGCCTAAACGAGAGAAACTGGAAAGGTTAGAGGCTTTCAGCAAAAGACTCAGGCTTGGCATCATAAA GCGAGTAAACCATGGAAGACACCGTTCTTCGCAACCTTAACAACAAAGTTCAACAAAATACTCTAAATTT GTTATATATGTTCTCTGCATCTTGCCATGTACACATGCAGCAAATCAAATATGTACTACCGTATCGATTG TCATTGCAAATGGACTACATTCCTAATCATATCCTTAGATAATCAAACACACTTCTTTTAGATAAATTAA TAATCCGTCCCGAGCTTCACCAGAACACAAGTCACCAAATCGAAAATAAAATGGATTTACAACAGTAGAA AAAAGAATCACAGAAGTTTTTGTTCACATCATTATGTGATGATTGTTTTATACGTGATGATATAGACACA CCATTATTAATAGATTAGCCGCAGCAACCTCCTTGCGGTGT From adsj at novozymes.com Tue Jun 1 09:42:02 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Tue, 01 Jun 2010 15:42:02 +0200 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: (Chris Fields's message of "Wed, 26 May 2010 06:53:50 -0500") References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> Message-ID: <87eigqj2dx.fsf@topper.koldfront.dk> Ok, so coming back to the reason for the changes in my fork?. It has been a while (the test in the application I am working on is from August 2007, so I have been using/carrying the patch for three years?), so I have to dig a little before it comes back to me. Basically, I would like to make a class that inherits from Bio::Seq::RichSeq and extends it. When I call ->seq on features on my modules, I'd like to get an object of my own type back. That sounds a little convoluted, so let me illustrate my thinking with a self-contained script you can run: = = = #!/usr/bin/perl use strict; use warnings; use Bio::SeqFeature::Generic; my $seq=MySeq->new(-seq=>'actg'); $seq->extra_method; print "len: " . length($seq->seq) . "\n"; my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); $new_feature->add_tag_value(note=>'test'); $seq->add_SeqFeature($new_feature); foreach my $feature ($seq->get_SeqFeatures) { my $obj=$feature->seq; print ref($obj) . "len: " . length($obj->seq); print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; $obj->extra_method; } exit 0; package MySeq; use base qw(Bio::Seq::RichSeq); sub extra_accessor { # ... } sub extra_method { # ... print "extra_method called\n"; } # ... 1; = = = The output I expect (what my changes give rise to) is: extra_method called len: 4 MySeqlen: 2 OK extra_method called But the output I get is: extra_method called len: 4 Bio::PrimarySeqlen: 2 FAIL Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. That is what the changes on my fork try to address. If there is a better way to accomplish the same result, I'd be flowing over with joy :-) Best regards, Adam ? http://github.com/adsj/bioperl-live - this commit in particular: - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 ? There actually was a little discussion about this, way back, on this list: * Thread start, Oct 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 * Patch as per suggestions from Hilmar Lapp, Nov 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 -- Adam Sj?gren adsj at novozymes.com From maj at fortinbras.us Tue Jun 1 12:36:00 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Tue, 1 Jun 2010 12:36:00 -0400 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation In-Reply-To: <1275379428.24468.20.camel@lafs-746g12s> References: <1275379428.24468.20.camel@lafs-746g12s> Message-ID: <3666E24BF5BC4A17935800B99A2C1C4A@NewLife> Thanks Jiri, I've created a bug report and assigned it to myself. See http://bugzilla.open-bio.org/show_bug.cgi?id=3088 cheers, Mark ----- Original Message ----- From: "Jiri Stiller" To: Sent: Tuesday, June 01, 2010 4:03 AM Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation > Hi, > I am trying to process bam file using Bio::Assembly::IO. I attached test > script and output. > When I am retrieving contigs I get correct contig number and position > but contig objects build from reads of different orientation don't > contain any read sequences. Contigs built from the reads of the same > orientations are fine. > > Your help/advice would be greatly appreciated. > > Cheers, > > -- > Jiri Stiller > Senior Bioinformatics Researcher > Australian Centre for Plant Functional Genomics > School of Land, Crop and Food Sciences > University of Queensland > Brisbane QLD 4072 > > j.stiller at uq.edu.au > Phone: +61 (0)7 3346 7082 > Mobile: +61 (0) 422 941 581 > Fax: +61 (0)7 3365 1177 > > > -------------------------------------------------------------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Tue Jun 1 13:38:46 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 12:38:46 -0500 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: <87eigqj2dx.fsf@topper.koldfront.dk> References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> <87eigqj2dx.fsf@topper.koldfront.dk> Message-ID: <17457107-2C9F-4F07-9BD5-EEA17F2F4901@illinois.edu> On Jun 1, 2010, at 8:42 AM, Adam Sj?gren wrote: > Ok, so coming back to the reason for the changes in my fork?. > > It has been a while (the test in the application I am working on is from > August 2007, so I have been using/carrying the patch for three years?), > so I have to dig a little before it comes back to me. > > Basically, I would like to make a class that inherits from > Bio::Seq::RichSeq and extends it. When I call ->seq on features on my > modules, I'd like to get an object of my own type back. > > That sounds a little convoluted, so let me illustrate my thinking with a > self-contained script you can run: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use Bio::SeqFeature::Generic; > > my $seq=MySeq->new(-seq=>'actg'); > $seq->extra_method; > print "len: " . length($seq->seq) . "\n"; > > my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); > $new_feature->add_tag_value(note=>'test'); > $seq->add_SeqFeature($new_feature); > > foreach my $feature ($seq->get_SeqFeatures) { > my $obj=$feature->seq; > print ref($obj) . "len: " . length($obj->seq); > print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; > $obj->extra_method; > } > > exit 0; > > package MySeq; > > use base qw(Bio::Seq::RichSeq); > > sub extra_accessor { > # ... > } > > sub extra_method { > # ... > print "extra_method called\n"; > } > > # ... > > 1; > = = = > > The output I expect (what my changes give rise to) is: > > extra_method called > len: 4 > MySeqlen: 2 OK > extra_method called > > But the output I get is: > > extra_method called > len: 4 > Bio::PrimarySeqlen: 2 FAIL > Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. > > That is what the changes on my fork try to address. > > If there is a better way to accomplish the same result, I'd be flowing > over with joy :-) > > > Best regards, > > Adam > > > ? http://github.com/adsj/bioperl-live - this commit in particular: > - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 > > ? There actually was a little discussion about this, way back, on this > list: > > * Thread start, Oct 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 > * Patch as per suggestions from Hilmar Lapp, Nov 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 > > -- > Adam Sj?gren > adsj at novozymes.com This is where some of the confusion lies: Bio::Seq is both a Bio::SeqI and a Bio::PrimarySeqI. This inheritance just indicates Bio::Seq fulfills both interface methods, but note that the way this is done (regarding PrimarySeqI) is the methods delegate to a PrimarySeqI (normally a simple Bio::PrimarySeq) contained within Bio::Seq. A Bio::Seq's contained SeqFeatures are attached to this, not to the Bio::Seq itself, for a very good reason: no circular references (so no need for Scalar::Util::weaken). If you are subclassing MySeq from Bio::Seq (or RichSeq in this case), maybe the way to go is to subclass a similar MyPrimarySeq class that does what you need, bless any data from the MySeq constructor into the new MyPrimarySeq, then add methods that delegate to that within MySeq. Does that make sense? chris From robfsouza at gmail.com Tue Jun 1 16:23:41 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 16:23:41 -0400 Subject: [Bioperl-l] blastxml to table Message-ID: Hello! I'm trying to convert BLAST XML output to a BLAST table which should be identical to a BLAST output generated using "-m 8". In the script below, if $type is "BLAST", the script works if $writer is TextResultWriter but when I try to generate BLAST compatible (i.e. like "-m 8") tables using $writer = "HSPTableWriter" it fails with the message Using default column map. ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't locate object method "iteration" via package "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. STACK: Error::throw STACK: Bio::Root::Root::throw /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 STACK: try{} block /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 STACK: Bio::SearchIO::write_result /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 ----------------------------------------------------------- Is there a way to fix this? Or should I use another approach to get "-m 8" compatible tables? Thanks, Robson #!/usr/bin/env perl #==================== use strict; use warnings; use Bio::SearchIO; use Getopt::Long; my $writer = "TextResultWriter"; my $type = "PSIBLAST"; GetOptions("w=s"=>\$writer, "t=s" => \$type); # Load writer use Module::Load; my $writer = "Bio::SearchIO::Writer::".$writer; load $writer; $writer = $writer->new(); # Open and convert input my $out = Bio::SearchIO->new(-writer => $writer); foreach my $file (@ARGV) { my $in = Bio::SearchIO->new(-format => "blastxml", -file => "<$file"); $in->blasttype($type); while( my $r = $in->next_result) { $out->write_result($r); } } exit 0; From cjfields at illinois.edu Tue Jun 1 17:47:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 16:47:48 -0500 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. Can you report this? I can't get to it (going out of town until Friday). chris On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > Hello! > > I'm trying to convert BLAST XML output to a BLAST table which should > be identical to a BLAST output generated using "-m 8". > In the script below, if $type is "BLAST", the script works if $writer > is TextResultWriter but when I try to generate BLAST compatible (i.e. > like "-m 8") tables using $writer = "HSPTableWriter" it fails with the > message > > Using default column map. > > ------------- EXCEPTION: Bio::Root::Exception ------------- > MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't > locate object method "iteration" via package > "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. > > STACK: Error::throw > STACK: Bio::Root::Root::throw > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 > STACK: try{} block > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 > STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 > STACK: Bio::SearchIO::write_result > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 > STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 > ----------------------------------------------------------- > > Is there a way to fix this? Or should I use another approach to get > "-m 8" compatible tables? > Thanks, > Robson > > #!/usr/bin/env perl > #==================== > > use strict; > use warnings; > use Bio::SearchIO; > use Getopt::Long; > > my $writer = "TextResultWriter"; > my $type = "PSIBLAST"; > GetOptions("w=s"=>\$writer, > "t=s" => \$type); > > # Load writer > use Module::Load; > my $writer = "Bio::SearchIO::Writer::".$writer; > load $writer; > $writer = $writer->new(); > > # Open and convert input > my $out = Bio::SearchIO->new(-writer => $writer); > foreach my $file (@ARGV) { > my $in = Bio::SearchIO->new(-format => "blastxml", > -file => "<$file"); > $in->blasttype($type); > while( my $r = $in->next_result) { > $out->write_result($r); > } > } > > exit 0; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From robfsouza at gmail.com Tue Jun 1 19:16:04 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 19:16:04 -0400 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: Hi Chris, just submitted the problem to Bugzilla (Bug 3089). Robson On Tue, Jun 1, 2010 at 5:47 PM, Chris Fields wrote: > That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. ?Can you report this? ?I can't get to it (going out of town until Friday). > > chris > > On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > >> Hello! >> >> I'm trying to convert BLAST XML output to a BLAST table which should >> be identical to a BLAST output generated using "-m 8". >> In the script below, if $type is "BLAST", the script works if $writer >> is TextResultWriter but when I try to generate BLAST compatible (i.e. >> like "-m 8") tables using $writer = "HSPTableWriter" it fails with the >> message >> >> Using default column map. >> >> ------------- EXCEPTION: Bio::Root::Exception ------------- >> MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't >> locate object method "iteration" via package >> "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. >> >> STACK: Error::throw >> STACK: Bio::Root::Root::throw >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 >> STACK: try{} block >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 >> STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 >> STACK: Bio::SearchIO::write_result >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 >> STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 >> ----------------------------------------------------------- >> >> Is there a way to fix this? Or should I use another approach to get >> "-m 8" compatible tables? >> Thanks, >> Robson >> >> #!/usr/bin/env perl >> #==================== >> >> use strict; >> use warnings; >> use Bio::SearchIO; >> use Getopt::Long; >> >> my $writer = "TextResultWriter"; >> my $type = "PSIBLAST"; >> GetOptions("w=s"=>\$writer, >> ? ? ? ? ? ? ? ? "t=s" => \$type); >> >> # Load writer >> use Module::Load; >> my $writer = "Bio::SearchIO::Writer::".$writer; >> load $writer; >> $writer = $writer->new(); >> >> # Open and convert input >> my $out = Bio::SearchIO->new(-writer => $writer); >> foreach my $file (@ARGV) { >> ? my $in = Bio::SearchIO->new(-format => "blastxml", >> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -file ? => "<$file"); >> ? $in->blasttype($type); >> ? while( my $r = $in->next_result) { >> ? ? ? $out->write_result($r); >> ? } >> } >> >> exit 0; >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From dimitark at bii.a-star.edu.sg Wed Jun 2 00:34:22 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Wed, 02 Jun 2010 12:34:22 +0800 Subject: [Bioperl-l] general perl question Message-ID: <4C05DF4E.2090507@bii.a-star.edu.sg> Hi guys, firstly i am sorry ive sent this email first to the wrong email(bioperl-l-request at lists.open-bio.org). Secondly, i am sorry to bother you with such problem but i do not know how to google that one :) Here is the problem. I want to start several simultaneous processes through my script but i found i cant do that unless i start them as background processes because otherwise 'system' waits for the process to exit. Now i use something like this: my @args=("$program $seqinput $$specname $eval &"); system(@args) == 0 or die "system @args failed: $!"; But that is a bit weird when i want to terminate the program then all the processes are still running and i have to kill them manually. Is there a way to start several simultaneous processes without '&'? Thank you for your patience and help Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Wed Jun 2 01:00:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 2 Jun 2010 17:00:33 +1200 Subject: [Bioperl-l] general perl question In-Reply-To: <4C05DF4E.2090507@bii.a-star.edu.sg> References: <4C05DF4E.2090507@bii.a-star.edu.sg> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B66A8@exchsth.agresearch.co.nz> It's not really a BioPerl question, more one of reading the Perl documentation. There's several ways of executing commands from Perl: * The exec() function executes a system command and never returns * system() exactly the same thing as exec(), except that a fork is done first, and the parent process waits for the child process to exit * backticks Eg. $date=`/usr/bin/date`; * open() and parse Eg. open PS, "/usr/bin/ps -ef |"; Up to you which you use, --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dimitar Kenanov > Sent: Wednesday, 2 June 2010 4:34 p.m. > To: 'bioperl-l at bioperl.org' > Subject: [Bioperl-l] general perl question > > Hi guys, > firstly i am sorry ive sent this email first to the wrong > email(bioperl-l-request at lists.open-bio.org). > > Secondly, i am sorry to bother you with such problem but i do not know > how to google that one :) > Here is the problem. I want to start several simultaneous processes > through my script but i found i cant do that unless i start them as > background processes because otherwise 'system' waits for the process to > exit. Now i use something like this: > > my @args=("$program $seqinput $$specname $eval &"); > system(@args) == 0 or die "system @args failed: $!"; > > But that is a bit weird when i want to terminate the program then all > the processes are still running and i have to kill them manually. > > Is there a way to start several simultaneous processes without '&'? > > Thank you for your patience and help > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From staffa at niehs.nih.gov Wed Jun 2 16:32:59 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Wed, 2 Jun 2010 16:32:59 -0400 Subject: [Bioperl-l] rebase file withrefm Message-ID: Could someone please tell me where in a normal bioperl installation the rebase file withrefm downlaoded from NEB goes. Thank You Nick Staffa Telephone: 919-316-4569 (NIEHS: 6-4569) Scientific Computing Support Group NIEHS Enterprise-Wide Information Technology Support Contract National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park, North Carolina From pengyu.ut at gmail.com Wed Jun 2 17:35:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 2 Jun 2010 16:35:13 -0500 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? Message-ID: Hi, I'm interested in query some keywords and retrieve the results automatically. For example, I go to the above webpage and query BIC. Then I get 1167 results. http://www.ncbi.nlm.nih.gov/sites/entrez I'm wondering if there is any tool in bioperl to help me retrieve query results. In particular, I also want to retrieve the MeSH terms, links to the papers, paper titles and abstracts. Would you please point me what tool I should use? -- Regards, Peng From florent.angly at gmail.com Wed Jun 2 19:27:58 2010 From: florent.angly at gmail.com (Florent Angly) Date: Thu, 03 Jun 2010 09:27:58 +1000 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? In-Reply-To: References: Message-ID: <4C06E8FE.30106@gmail.com> Hi Peng, I think you could do all of this with Bio::DB::EUtilities See http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook Florent On 03/06/10 07:35, Peng Yu wrote: > Hi, > > I'm interested in query some keywords and retrieve the results automatically. > > For example, I go to the above webpage and query BIC. Then I get 1167 > results. > > http://www.ncbi.nlm.nih.gov/sites/entrez > > I'm wondering if there is any tool in bioperl to help me retrieve > query results. In particular, I also want to retrieve the MeSH terms, > links > to the papers, paper titles and abstracts. Would you please point me > what tool I should use? > > From dimitark at bii.a-star.edu.sg Wed Jun 2 23:15:36 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Thu, 03 Jun 2010 11:15:36 +0800 Subject: [Bioperl-l] BlastPlusMethods Message-ID: <4C071E58.3070008@bii.a-star.edu.sg> Hi guys, i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize the psiblast(and most probably rps and rpst) result and therefore doesnt parse it. The problem was in the 'run' method where the match doesnt match properly: ------ m/^[t]?blast[npx]/ && do { ------- So i modified it pretty ugly into the following but now it works for me: ------ m/^(t|psi|rps|rpst)?blast[npx]?/ && do { ------ I dont know if it may be more beautiful but i suppose it could :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From maj at fortinbras.us Thu Jun 3 12:29:31 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Thu, 3 Jun 2010 12:29:31 -0400 Subject: [Bioperl-l] BlastPlusMethods In-Reply-To: <4C071E58.3070008@bii.a-star.edu.sg> References: <4C071E58.3070008@bii.a-star.edu.sg> Message-ID: Hey Dimitar, Beauty is in the eye of the beholder. Looks beautiful (since it works) to me. Can you do a git pull request on this? The guys who understand those things can then pull it in-- Thanks Mark ----- Original Message ----- From: "Dimitar Kenanov" To: Sent: Wednesday, June 02, 2010 11:15 PM Subject: [Bioperl-l] BlastPlusMethods > Hi guys, > i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize > the psiblast(and most probably rps and rpst) result and therefore doesnt parse > it. The problem was in the 'run' method where the match doesnt match properly: > ------ > m/^[t]?blast[npx]/ && do { > ------- > > So i modified it pretty ugly into the following but now it works for me: > ------ > m/^(t|psi|rps|rpst)?blast[npx]?/ && do { > ------ > I dont know if it may be more beautiful but i suppose it could :) > > Cheers > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From David.Messina at sbc.su.se Thu Jun 3 13:45:19 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 19:45:19 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From staffa at niehs.nih.gov Thu Jun 3 13:59:20 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 13:59:20 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Message-ID: I was thinking about where the default restriction information is kept. I remember trying to use the withrefm file in the manner outlined below, and it didn't work. I did not know about File::Temp. I must find out about this. On 6/3/10 1:45 PM, "Dave Messina" wrote: Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From David.Messina at sbc.su.se Thu Jun 3 14:14:55 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 20:14:55 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From staffa at niehs.nih.gov Thu Jun 3 14:17:42 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 14:17:42 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> Message-ID: Thanks Muchly. I'll give it a try. On 6/3/10 2:14 PM, "Dave Messina" wrote: > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From gopal.cshl at gmail.com Fri Jun 4 07:23:59 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 07:23:59 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast Message-ID: Hi, I am trying to run standalone blast and parse the files, both using BioPerl. When running a moderately big file, I keep getting this message: "Error in tempfile() using /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not create temp file /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. please help me how to fix this problem, thanks, -gopal From pengyu.ut at gmail.com Fri Jun 4 10:47:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 09:47:13 -0500 Subject: [Bioperl-l] How to print get_available_databases? Message-ID: Hi, I want to print get_available_databases using foreach. But it prints all 1's. I know that this is a perl question. But I still ask it here because people on a more general perl mailing may not have bioperl installed. use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar',); print $factory->get_available_databases, "\n"; print "available databases: \n\t", join("\n\t",$factory->get_available_databases),"\n"; foreach($factory->get_available_databases) { print print "\n"; } -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 11:10:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:10:48 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: You should post code examples that cause the problem (the more concise the better). My guess is you are somehow caching the files by persisting the SearchIO instances; files for these are normally cleaned up when the SearchIO instance is destroyed. If needed you can also call cleanup() from the standaloneblast instance to clean them up manually. chris On Jun 4, 2010, at 6:23 AM, Gopal wrote: > Hi, > > I am trying to run standalone blast and parse the files, both using BioPerl. > > When running a moderately big file, I keep getting this message: > > "Error in tempfile() using > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > create temp file > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > please help me how to fix this problem, > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 4 11:14:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:14:08 -0500 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <8F4443A9-6517-400F-AA9E-B00F511CC600@illinois.edu> On Jun 4, 2010, at 9:47 AM, Peng Yu wrote: > Hi, > > I want to print get_available_databases using foreach. But it prints > all 1's. I know that this is a perl question. But I still ask it here > because people on a more general perl mailing may not have bioperl > installed. > > ... > foreach($factory->get_available_databases) { > print > print "\n"; > } > > > -- > Regards, > Peng You are missing a semicolon: foreach($factory->get_available_databases) { print; print "\n"; } Without it, the first print() prints the results of the second print() (which prints the newline), which evals to success, or 1. chris From asidhu at biomap.org Fri Jun 4 11:33:44 2010 From: asidhu at biomap.org (Amandeep Sidhu) Date: Fri, 4 Jun 2010 23:33:44 +0800 Subject: [Bioperl-l] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010) Message-ID: IEEE CBMS 2010 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 Perth, Australia, 12-15 October 2010 http://www.cbms2010.curtin.edu.au/ The 23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS 2010) is intended to provide an international forum for discussing the latest results in the field of computational medicine. The scientific program of CBMS 2010 will consist of invited keynote talks given by leading scientists in the field, and regular and special track sessions that cover a broad array of issues which relate computing to medicine. RELEVANT TOPICS Network and Telemedicine Systems Medical Databases & Information Systems Computer-Aided Diagnosis Medical Devices with Embedded Computers Bioinformatics in Medicine Software Systems in Medicine Pervasive Health Systems and Services Web-based Delivery of Medical Information Medical Image Segmentation & Compression Content Analysis of Biomedical Image Data Knowledge-Based & Decision Support Systems Hand-held Computing Applications in Medicine Knowledge Discovery & Data Mining Signal and Image Processing in Medicine Multimedia Biomedical Databases CBMS 2010 invites original previously unpublished contributions that are not submitted concurrently to a journal or another conference. Many of the above listed topics are represented by corresponding Special Tracks, while others are solely covered by the general CBMS track. Prospective authors are expected to submit their contributions to one of the corresponding Special Tracks or to the general track if none of the special tracks is relevant. SPECIAL TRACKS ST1: Computational Proteomics and Genomics ST2: Knowledge Discovery and Decision Systems in Biomedicine ST3: Ontologies for Biomedical Systems ST4: HealthGrid & Cloud Computing ST5: Technology Enhanced Learning in Medical Education ST6: Intelligent Patient Management ST7: Data Streams in Healthcare ST8: Supporting Collaboration among Healthcare Workers ST9: Telemedicine ST10: Computer-Based Systems for Mental Health ST11: Image Informatics in Biomedical Research and Clinical Medicine ST12: e-Health SUBMISSION GUIDELINES Papers should be submitted electronically using EasyChair online submission system. The papers must be prepared following the IEEE two-column format and should not exceed the length of 6 (six) Letter-sized pages. LaTeX or Microsoft Word templates can be used when preparing the papers. Please, note that only PDF format of submissions is allowed. Submission web site: http://www.easychair.org/conferences/?conf=cbms2010 All submissions will be peer-reviewed by at least three reviewers. The proceedings will be published by the IEEE Computer Society Press. At least one of the authors of accepted papers is required to register and present the work at the conference; otherwise their papers will be removed from the digital library after the conference. IMPORTANT DATES Submission deadline for regular papers: 24 June 2010 Deadline for tutorial submission: 24 June 2010 Notification of acceptation for papers and tutorials: 2 Aug 2010 Final camera ready due: 2 Sep 2010 Author registration: 2 Sep 2010 INTENDED AUDIENCE Engineers, scientists, clinicians and managers involved in medical computing projects are encouraged to submit papers to the symposium and/or attend the symposium. The symposium provides its attendees with an opportunity to experience state-of-the-art research and development in a variety of topics directly and indirectly related to their own work. In addition to research papers, keynote speakers and tutorial sessions it provides participants with an opportunity to come up-to-date on important technological issues. The symposium encourages the participation of students engaged in research/development in computer-based medical systems. Organizing Committee GENERAL CHAIRS Tharam Dillon, Curtin University of Technology, Australia Daniel Rubin, National Center for Biomedical Ontologies, USA William Gallagher, University College Dublin, Ireland PROGRAM CHAIRS Amandeep Sidhu, Curtin University of Technology, Australia Alexey Tsymbal, Siemens, Germany PUBLICATION CHAIRS Mykola Pechenizkiy, Eindhoven University of Technology, Netherlands Tony Hu, Drexel University, USA SPECIAL TRACK CHAIRS Maja Hadzic, Curtin University of Technology, Australia Jake Chen, Indiana University, USA TUTORIAL CHAIRS Phoebe Chen, La Trobe University, Australia Xiaofang Zhou, University of Queensland, Australia PUBLICITY CHAIRS Carolyn McGregor, University of Ontario Institute of Technology, Canada Meifania Chen, Curtin University of Technology, Australia From David.Messina at sbc.su.se Fri Jun 4 11:39:44 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 4 Jun 2010 17:39:44 +0200 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <1402B6DE-5EB6-4436-B139-704C7DA66F1C@sbc.su.se> Hi Peng, In your code > foreach($factory->get_available_databases) { > print > print "\n"; > } > You're not printing anything that's coming from get_available_databases. You say print print Which means print the return value from the print command, which is true, or in other words, '1'. Not what you want. Here you have encountered the peril of implicit variables. When you write a foreach loop, the idea is to put a name on each item, one after the other, from an array of items. So it's good idea to be explicit about what that name is. For example: foreach my $database ($factory->get_available_databases) { print $database, "\n"; } In this way it's much clearer what you are doing (and it actually works! :) ). Dave From gopal.cshl at gmail.com Fri Jun 4 11:45:03 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 11:45:03 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: Hi Chris, this is the code. Sorry I did not realize I should post the code: my @params = ( program => 'blastp', database => '/Users/XXX/Desktop/genomes/BAA/all.faa'); my $blast_obj = Bio::Tools::Run::StandAloneBlast->new(@params); my $in= $ARGV[0]; print "Query_name\t". "Hit name\t" ."Hit description\t" ."Hit length\t" . "percent_identity\t" . "start('hit')\t" ."end('hit')\t" ."start('query')\t" . "start('query')\n"; my $seqio_obj = Bio::SeqIO->new(-file=> '2cs2151.fasta', '-format' => 'Fasta'); #print $seq_in->name."\n"; my @seq_array =(); my $seqc=1; my $blast_report; my @reports; my @hits; while( my $input = $seqio_obj->next_seq() ) { # $blast_report = $blast_obj->blastall($input); push(@reports,$blast_report); } foreach(@reports){ #print $_->next_result->num_hits."xxx\n"; while(my $result=$_->next_result){ #if($result->num_hits){ my @stats = $result->available_statistics; my @params = $result->available_parameters; while(my $hit= $result->next_hit){ while ( my $hsp = $hit->next_hsp ) { if ($hsp->percent_identity >=90){ my $id = $hit->matches('id'); my $cons = $hit->matches('cons'); my @accs = $hit->each_accession_number; my @qidentical = $hit->seq_inds('query','identical'); my @qconserved = $hit->seq_inds('query','conserved'); my @hidentical = $hit->seq_inds('hit','identical'); my @hconserved = $hit->seq_inds('hit','conserved'); #loop 2b stuff removed from here print $result->query_name. "\t"; my $name= fix_name($hit->name); print $name . "\t"; #print "Hit\taccession\t" . $hit->accession . "\n"; if($hit->description=~/.+(.ESA.+\d+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+\w)\s*\[.+turicensis.+/){ print $1." [ct3032]"."\t"; }else{ print $hit->description . "\t"; } print $hit->length . "\t"; my @hrange = $hsp->range('hit'); my @qrange = $hsp->range('query'); my $aln = $hsp->get_aln; my $alnIO = Bio::AlignIO->new(-format=>"clustalw"); my $p=sprintf("%.1f", $hsp->percent_identity); print $p. "\t"; # print "HSP\tstrand()\t" . $hsp->strand() . "\n"; print $hsp->start('hit') . "\t"; print $hsp->end('hit') . "\t"; print $hsp->start('query') . "\t"; print $hsp->end('query') . "\n"; # print "HSP\talignment\n"; # print $alnIO->write_aln($aln); } } } #} } } On Fri, Jun 4, 2010 at 11:10 AM, Chris Fields wrote: > You should post code examples that cause the problem (the more concise the > better). My guess is you are somehow caching the files by persisting the > SearchIO instances; files for these are normally cleaned up when the > SearchIO instance is destroyed. > > If needed you can also call cleanup() from the standaloneblast instance to > clean them up manually. > > chris > > > On Jun 4, 2010, at 6:23 AM, Gopal wrote: > > > Hi, > > > > I am trying to run standalone blast and parse the files, both using > BioPerl. > > > > When running a moderately big file, I keep getting this message: > > > > "Error in tempfile() using > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > > create temp file > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many > open > > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > > > please help me how to fix this problem, > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From jessica.sun at gmail.com Fri Jun 4 12:03:06 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 4 Jun 2010 12:03:06 -0400 Subject: [Bioperl-l] Highlighted short sequences Message-ID: Does any one know if there is any existing function of bioperl that can locate and highlighted short stretch of nt sequences within long genomic sequences ? Thanks in advance. -- Jessica Jingping Sun From pengyu.ut at gmail.com Fri Jun 4 12:15:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:15:10 -0500 Subject: [Bioperl-l] The usage of $field->$_ Message-ID: In the Eutilities cookbook, http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook I see the following code, print join(',', grep {$field->$_} qw(is_date is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; I'm not quite familiar with the usage of $field->$_. I don't see where it is covered in man perlvar (I don't the usage of $_ for pattern matching, but not in $variable->$). Would you please let me know where is the document that explain this usage? -- Regards, Peng From pengyu.ut at gmail.com Fri Jun 4 12:33:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:33:10 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? Message-ID: Hi, It seems that term_count is not available for einfo. $ ./main.pl Can't locate object method "term_count" via package "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. $ vim ./main.pl pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ cat ./main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar', -db => 'pubmed'); while (my $field = $factory->next_FieldInfo) { print "term_count: ",$field->term_count,"\n"; } But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' doesn't say so. Could you let me know where to find which methods are available for which eutilities? -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 12:44:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 11:44:44 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> On Jun 4, 2010, at 10:45 AM, Gopal wrote: > Hi Chris, > > this is the code. Sorry I did not realize I should post the code: > > > ... > while( my $input = $seqio_obj->next_seq() ) { > # > $blast_report = $blast_obj->blastall($input); > > push(@reports,$blast_report); > > } > ... Yep, you're caching your SearchIO instances here. No need; if you want to cache you should cache the Result object instead. Something like push(@reports, $blast_report->next_result); Probably best to rethink this strategy unless you have absolutely no other way to deal with your data, if you have lots of BLAST reports you will suck up memory very quickly. > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 chris From pengyu.ut at gmail.com Fri Jun 4 12:57:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:57:43 -0500 Subject: [Bioperl-l] get_dbfrom document Message-ID: According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, get_dbfrom is alias for get_db(). get_dbfrom Title : get_dbfrom Usage : my $origdb = $link->get_dbfrom; Function : returns referring database Returns : string Args : none Note : alias for get_db() I'm not sure what get_db() is but I only see get_db. Is get_db the same as get_db()? If this is true, then get_dbfrom is not an alias for get_db, because I get different result for the two variables. Am I understanding it correctly? -- Regards, Peng From gopal.cshl at gmail.com Fri Jun 4 13:51:04 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 13:51:04 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: Hi Chris, I followed your suggestion and changed the loop into: On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > > > while( my $input = $seqio_obj->next_seq() ) { > > # > > $blast_report = $blast_obj->blastall($input); > > > > push(@reports,$blast_report); > > > > } > > ... > > Yep, you're caching your SearchIO instances here. No need; while( my $input = $seqio_obj->next_seq() ) { $blast_report = $blast_obj->blastall($input); while(my $result=$blast_report->next_result){ Now no objects are cached in arrays. The script worked fine with one genome already and the other is running. thanks for cleaning things up. I will remember to avoid this snag. best, -gopal > if you want to cache you should cache the Result object instead. Something > like > > push(@reports, $blast_report->next_result); > > Probably best to rethink this strategy unless you have absolutely no other > way to deal with your data, if you have lots of BLAST reports you will suck > up memory very quickly. > > > -- > > Gopal Gopinathrao, PhD > > Bioinformaticist / Biologist > > CFSAN, US FDA > > www.patrn.net/patrn > > gopal.gopinathrao at fda.hhs.gov > > P: 301-210-7881 > > > chris -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From pengyu.ut at gmail.com Fri Jun 4 15:58:09 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 14:58:09 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms Message-ID: Hi, I think that there is a typo in the document of get_replaced_terms. The following is from perldoc Bio::DB::EUtilities. $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? (Note 's'). get_replaced_terms Title : get_replaced_terms Usage : my $term = $eutil->get_replaced_term Function : returns array of strings replaced in the query Returns : string Args : none Notes : only applicable for espell Also, I tried the following code. I'm not sure I got the following error. Would you please let me know what I'm wrong? $ cat ./get_replaced_terms/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; $ ./get_replaced_terms/main.pl Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. get_replaced_terms: -- Regards, Peng From maj at fortinbras.us Fri Jun 4 16:06:55 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Fri, 4 Jun 2010 16:06:55 -0400 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4F3323F9671041598734EFC85C395925@NewLife> This is a fairly basic perl idiom. $_ is changing with the outer loop containing the print statement, which is probably looping through the accessors for the object represented by $field. ----- Original Message ----- From: "Peng Yu" To: Sent: Friday, June 04, 2010 12:15 PM Subject: [Bioperl-l] The usage of $field->$_ > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From pengyu.ut at gmail.com Fri Jun 4 16:26:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 15:26:53 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: <4F3323F9671041598734EFC85C395925@NewLife> References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: I know this is not a hard question. But I'm still learning perl. I don't see the usage "->$_" in man perlvar. Would you please show me where is the documentation that has detailed discussion on this? On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen wrote: > This is a fairly basic perl idiom. $_ is changing with the outer loop > containing the print statement, which is probably looping through the > accessors for the object represented by $field. > ----- Original Message ----- From: "Peng Yu" > To: > Sent: Friday, June 04, 2010 12:15 PM > Subject: [Bioperl-l] The usage of $field->$_ > > >> In the Eutilities cookbook, >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook >> >> I see the following code, >> >> ? print join(',', grep {$field->$_} qw(is_date >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; >> >> I'm not quite familiar with the usage of $field->$_. I don't see where >> it is covered in man perlvar (I don't the usage of $_ for pattern >> matching, but not in $variable->$). Would you please let me know where >> is the document that explain this usage? >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > -- Regards, Peng From Kevin.M.Brown at asu.edu Fri Jun 4 16:46:36 2010 From: Kevin.M.Brown at asu.edu (Kevin Brown) Date: Fri, 4 Jun 2010 13:46:36 -0700 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: <1A4207F8295607498283FE9E93B775B406C40162@EX02.asurite.ad.asu.edu> That's because you are mixing up two things. -> is an accessor and not part of a variable. $_ is a variable and is in perlvar. And this isn't a list for learning PERL. There are plenty of resources out their for learning general PERL information. Kevin Brown Center for Innovations in Medicine Biodesign Institute Arizona State University > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, June 04, 2010 1:27 PM > To: Mark A. Jensen > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] The usage of $field->$_ > > I know this is not a hard question. But I'm still learning perl. > > I don't see the usage "->$_" in man perlvar. Would you please show me > where is the documentation that has detailed discussion on this? > > On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen > wrote: > > This is a fairly basic perl idiom. $_ is changing with the > outer loop > > containing the print statement, which is probably looping > through the > > accessors for the object represented by $field. > > ----- Original Message ----- From: "Peng Yu" > > To: > > Sent: Friday, June 04, 2010 12:15 PM > > Subject: [Bioperl-l] The usage of $field->$_ > > > > > >> In the Eutilities cookbook, > >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > >> > >> I see the following code, > >> > >> ? print join(',', grep {$field->$_} qw(is_date > >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden > is_numerical)),"\n\n"; > >> > >> I'm not quite familiar with the usage of $field->$_. I > don't see where > >> it is covered in man perlvar (I don't the usage of $_ for pattern > >> matching, but not in $variable->$). Would you please let > me know where > >> is the document that explain this usage? > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > > > > > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From armendarez77 at hotmail.com Fri Jun 4 17:47:39 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Fri, 4 Jun 2010 14:47:39 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 Message-ID: Hello, I'm noticing that Bio::Tools::Run::Primer3 doesn't always give me the same results as the Web Primer3. For example, I provided Bio::Tools::Run::Primer3 the following: Template Sequence: atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg PRIMER_LEFT_INPUT: atgagncttctaaccgagGTcGAAACGTA PRIMER_TASK: pick_left_only I just want to know if the Tm is between 60 and 80C. However, Bio::Tools::Run::Primer3 returns nothing, while Web Primer3 returns a result, as expected: OLIGO start len tm gc% any 3' seq LEFT_PRIMER 1 29 69.11 46.43 4.00 2.00 atgagncttctaaccgagGTcGAAACGTA SEQUENCE SIZE: 225 INCLUDED REGION SIZE: 225 1 atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTC >>>>>>>>>>>>>>>>>>>>>>>>>>>>> 61 AAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAg 121 GCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTn 181 GGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg _________________________________________ Here is a snippet of my code for the above parameters: my $template = "atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg"; my $leftInput = "atgagncttctaaccgagGTcGAAACGTA"; my $templateObj = Bio::PrimarySeq->new(-seq=>$template, -id=>'Template'); my $primer3 = Bio::Tools::Run::Primer3->new(-seq=>$templateObj, -path =>"/usr/bin/primer3_core"); unless ($primer3->executable) {print STDERR "primer3 can not be found. Is it installed?\n"; exit(-1)} $primer3->add_targets('PRIMER_LEFT_INPUT'=>$primerSeq, 'PRIMER_TASK'=>'pick_left_only'); my $results=$primer3->run; my $numberResults = $results->number_of_results(); if($numberResults > 0){ for(my $n=0; $n < $numberResults; $n++){ my $pr = $results->primer_results($n); my $primer = ${$pr}{'PRIMER_LEFT_SEQUENCE'}; my $gc = ${$pr}{'PRIMER_LEFT_GC_PERCENT'}; my $tm = ${$pr}{'PRIMER_LEFT_TM'}; my $selfAny = ${$pr}{'PRIMER_LEFT_SELF_ANY'}; my $selfEnd = ${$pr}{'PRIMER_LEFT_SELF_END'}; my $endStability = ${$pr}{'PRIMER_LEFT_END_STABILITY'}; print "$primer\t$gc\t$tm\t$selfAny\t$selfEnd\t$endStability\n"; } } This seems pretty straightforward, but I don't get any results. Can you see what I am doing wrong? Thank you, Veronica _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From David.Messina at sbc.su.se Fri Jun 4 18:31:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:31:50 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: On Jun 4, 2010, at 9:58 PM, Peng Yu wrote: > I think that there is a typo in the document of get_replaced_terms. Fixed, thanks. Dave From David.Messina at sbc.su.se Fri Jun 4 18:47:36 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:47:36 +0200 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: References: Message-ID: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Hi Jessica, > Does any one know if there is any existing function of bioperl that can > locate and highlighted short stretch of nt sequences within long genomic sequences ? I don't think there is an out-of-the-box BioPerl solution for this. You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. A simply way, requiring no special code, would be to change the case of the letters: agctagcatgcatgcAGACTGATCATCagctagctac Or use HTML: agctagcatgcatgcAGACTGATCATCagctagctac For some more sophisticated options, take a look at Bio::Graphics: http://search.cpan.org/perldoc?Bio::Graphics Dave From David.Messina at sbc.su.se Fri Jun 4 19:06:06 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:06:06 +0200 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > It seems that term_count is not available for einfo. The method is actually get_term_count, not term_count. Thanks for catching that (now fixed). Dave From David.Messina at sbc.su.se Fri Jun 4 19:21:41 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:21:41 +0200 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <575B0EED-748C-40AE-A0C2-4EE94E0315A1@sbc.su.se> > I'm not sure what get_db() is but I only see get_db. > Is get_db the same as get_db()? Yes. Think about how you call most functions. They take arguments in parentheses after their name. Such as: my $string = join("\t", @array); "\t" and @array are arguments to the join function. Or: my $lowercase_string = lc("MY UPPERCASE STRING"); "MY UPPERCASE STRING" is an argument to the lc function. So in Perl we often write join() or lc() to indicate that join() and lc() are functions. > If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. >From looking at the code, I think you're right. get_db() and get_dbto() are aliases for get_database(), all of which refer to the queried database. But get_dbfrom() gives you the referring database, that is the database linked from (as pointed out in the synopsis. Fixed this. Dave From David.Messina at sbc.su.se Fri Jun 4 20:10:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:10:20 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Please be sure to "reply all" so that this conversation stays on the mailing list. > Could you also take a look at the question in the original email? Thank you! Oops, missed that. > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: I think you might have pasted two different examples together. From http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#espell the correct method to call when using espell is get_corrected_query: print "Did you mean \"",$factory->get_corrected_query, "\"?\n"; instead of the get_replaced_terms one. Dave From David.Messina at sbc.su.se Fri Jun 4 20:16:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:16:57 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: Message-ID: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Hi Veronica, Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? Dave From pengyu.ut at gmail.com Fri Jun 4 20:46:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 19:46:53 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Fri, Jun 4, 2010 at 7:10 PM, Dave Messina wrote: > Please be sure to "reply all" so that this conversation stays on the mailing list. > >> Could you also take a look at the question in the original email? Thank you! > > > Oops, missed that. > >> Also, I tried the following code. I'm not sure I got the following >> error. Would you please let me know what I'm wrong? >> >> $ cat ./get_replaced_terms/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::DB::EUtilities; >> >> my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', >> ? ? ? ? ? ? ? ? ? ? ? ? -term => 'brest cnacer', >> ? ? ? ? ? ? ? ? ? ? ? ? -email => 'mymail at foo.bar' >> ? ? ? ? ? ? ? ? ? ? ? ); >> >> print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; >> >> $ ?./get_replaced_terms/main.pl >> Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. >> get_replaced_terms: > > > I think you might have pasted two different examples together. No. I want to try get_replaced_terms instead of get_corrected_query. Could you give me an example in which get_replaced_terms is used? -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 06:51:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:20 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: Most of these methods have changed to get_* methods (nothing is settable). I'll go through and check them for consistency, just to make sure. chris On Jun 4, 2010, at 11:33 AM, Peng Yu wrote: > Hi, > > It seems that term_count is not available for einfo. > > > $ ./main.pl > Can't locate object method "term_count" via package > "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. > $ vim ./main.pl > pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ > cat ./main.pl > > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', > -email => 'mymail at foo.bar', > -db => 'pubmed'); > > while (my $field = $factory->next_FieldInfo) { > print "term_count: ",$field->term_count,"\n"; > } > > > But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' > doesn't say so. Could you let me know where to find which methods are > available for which eutilities? > > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:51:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:30 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4A770918-B0F3-4BD8-9DAC-2B7BD2CCF4F3@illinois.edu> $_ is the value being iterated through in a grep of a list of values. This is just using that list as methods (like $field->is_date, but for each method), testing the return value as defined, and if so adding to the list for the join. chris On Jun 4, 2010, at 11:15 AM, Peng Yu wrote: > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:55:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:55:17 -0500 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <44C403BF-1C78-4793-ACD5-BA6A18D6A153@illinois.edu> That's incorrect; get_dbfrom for elink is the originating database; get_db should always be the database that is queried (for elink this is dbto). Will look into it. chris On Jun 4, 2010, at 11:57 AM, Peng Yu wrote: > According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, > get_dbfrom is alias for get_db(). > > get_dbfrom > Title : get_dbfrom > Usage : my $origdb = $link->get_dbfrom; > Function : returns referring database > Returns : string > Args : none > Note : alias for get_db() > > I'm not sure what get_db() is but I only see get_db. Is get_db the > same as get_db()? If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. > > Am I understanding it correctly? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:56:49 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:56:49 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: <4EA71510-CF81-4D93-921A-F479309281E4@illinois.edu> We do have the cleanup() method if caching, but in practice I've found that caching is very rarely ever needed. chris On Jun 4, 2010, at 12:51 PM, Gopal wrote: > Hi Chris, > > I followed your suggestion and changed the loop into: > > On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > >> >>> while( my $input = $seqio_obj->next_seq() ) { >>> # >>> $blast_report = $blast_obj->blastall($input); >>> >>> push(@reports,$blast_report); >>> >>> } >>> ... >> >> Yep, you're caching your SearchIO instances here. No need; > > > > > while( my $input = $seqio_obj->next_seq() ) { > $blast_report = $blast_obj->blastall($input); > > > while(my $result=$blast_report->next_result){ > > Now no objects are cached in arrays. The script worked fine with one genome > already and the other is running. > thanks for cleaning things up. I will remember to avoid this snag. > > best, > > -gopal > > > > > > > > > > > > >> if you want to cache you should cache the Result object instead. Something >> like >> >> push(@reports, $blast_report->next_result); >> >> Probably best to rethink this strategy unless you have absolutely no other >> way to deal with your data, if you have lots of BLAST reports you will suck >> up memory very quickly. >> >>> -- >>> Gopal Gopinathrao, PhD >>> Bioinformaticist / Biologist >>> CFSAN, US FDA >>> www.patrn.net/patrn >>> gopal.gopinathrao at fda.hhs.gov >>> P: 301-210-7881 >> >> >> chris > > > > > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:34:34 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:34:34 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Message-ID: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. chris On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > Hi Veronica, > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > Dave > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:36:18 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:36:18 -0500 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> References: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Message-ID: On Jun 4, 2010, at 5:47 PM, Dave Messina wrote: > Hi Jessica, > > >> Does any one know if there is any existing function of bioperl that can >> locate and highlighted short stretch of nt sequences within long genomic sequences ? > > > I don't think there is an out-of-the-box BioPerl solution for this. > > You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. > > For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. > > See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. > > Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. > > A simply way, requiring no special code, would be to change the case of the letters: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > Or use HTML: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > For some more sophisticated options, take a look at Bio::Graphics: > > http://search.cpan.org/perldoc?Bio::Graphics > > > Dave GBrowse (via Bio::Graphics) does highlighting for text searches, so you could probably dig out the code used for that as a start. chris From cjfields at illinois.edu Sat Jun 5 08:37:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:37:26 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> References: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> Message-ID: <6C1D172A-B59A-4EE8-90E4-FC693CC031DB@illinois.edu> On Jun 4, 2010, at 6:06 PM, Dave Messina wrote: > > On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > >> It seems that term_count is not available for einfo. > > The method is actually get_term_count, not term_count. > > Thanks for catching that (now fixed). > > > Dave Thanks for the doc fixes dave. I'll go through and see if there are any more. Peng, let me know if you run into anything else (or you can submit them to bugzilla if needed). chris From cjfields at illinois.edu Sat Jun 5 08:40:29 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:40:29 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Jun 4, 2010, at 7:46 PM, Peng Yu wrote: >> I think you might have pasted two different examples together. > > No. I want to try get_replaced_terms instead of get_corrected_query. > Could you give me an example in which get_replaced_terms is used? > > -- > Regards, > Peng Peng, This is just a value that NCBI returns, indicating which terms have been replaced in a query. chris From cjfields at illinois.edu Sat Jun 5 09:20:19 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:20:19 -0500 Subject: [Bioperl-l] Leftover SVN tags Message-ID: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... chris From cjfields at illinois.edu Sat Jun 5 09:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:35:51 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <6B14D526-D9F8-416B-8B7A-273817892C7A@illinois.edu> On Jun 4, 2010, at 2:58 PM, Peng Yu wrote: > Hi, > > I think that there is a typo in the document of get_replaced_terms. > The following is from perldoc Bio::DB::EUtilities. > $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? > (Note 's'). > > > get_replaced_terms > Title : get_replaced_terms > Usage : my $term = $eutil->get_replaced_term > Function : returns array of strings replaced in the query > Returns : string > Args : none > Notes : only applicable for espell > > > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: > > > -- > Regards, > Peng There were no replaced terms returned, you can see this in the raw XML (see below). So the method doesn't return anything, hence the warning. You can get around this if you do something like: print "get_replaced_terms: ".($factory->get_replaced_terms || '')."\n"; chris pyrimidine1:email cjfields$ cat espell.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print $factory->get_Response->content."\n"; pyrimidine1:email cjfields$ perl espell.pl pubmed brest cnacer breast cancer chris From hlapp at drycafe.net Sat Jun 5 10:50:23 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 5 Jun 2010 10:50:23 -0400 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Message-ID: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. -hilmar On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > Looks like we have $Id$ tags left over from SVN. The question is, > so we want to keep these in and have them expanded via > gitattributes? Personally having the SHA in there seems kinda > pointless.... > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 5 11:12:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 10:12:26 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> Message-ID: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> That was the only reason I could think of, but truthfully I generally have the user indicate which $Bio::Root::Root::VERSION and/or 'perldoc -l Bio::Root::Root' (the latter which gives the location of the bioperl install). chris On Jun 5, 2010, at 9:50 AM, Hilmar Lapp wrote: > It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. > > But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. > > -hilmar > > On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > >> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sat Jun 5 11:44:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 10:44:43 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) Message-ID: The following problem generate exceptions, because certain parameters are not passed to reset_parameters. However, I think that it is reasonable to avoid setting any parameters that have already been set using new(). If my understand is correct, I'd suggest that reset_parameters should only take parameters that need to be reset but not to take parameters that don't have be reset. #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'protein', -term => 'BRCA1 AND human', -email => 'mymail at foo.bar', ); print "get_retmax(): ",$factory->get_retmax(),"\n"; my $count=$factory->get_count; print "count: ",$count,"\n"; $factory->reset_parameters(-eutil => 'esearch', # -db => 'protein', # -term => 'BRCA1 AND human', # -email => 'mymail at foo.bar', -retmax => $count ); print "get_retmax(): ",$factory->get_retmax(),"\n"; -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 16:09:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 15:09:37 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) In-Reply-To: References: Message-ID: <00436010-A1D5-441F-91A7-591E7E7D4F79@illinois.edu> On Jun 5, 2010, at 10:44 AM, Peng Yu wrote: > The following problem generate exceptions, because certain parameters > are not passed to reset_parameters. However, I think that it is > reasonable to avoid setting any parameters that have already been set > using new(). If my understand is correct, I'd suggest that > reset_parameters should only take parameters that need to be reset but > not to take parameters that don't have be reset. You need to use set_parameters() to carry over parameters to subsequent searches. Just as the name of the method implies, reset_parameters() resets pretty much everything, then sets what you pass, and is necessary between certain steps to ensure you aren't carrying over parameters that cause problems when switching eutils if using the same instance (this used to be a problem with elink in particular). I may add an exception for email and tool parameters as a convenience for the obvious reasons. However, changing the below to set_parameters() works for me. > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'protein', > -term => 'BRCA1 AND human', > -email => 'mymail at foo.bar', > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > my $count=$factory->get_count; > print "count: ",$count,"\n"; > > $factory->reset_parameters(-eutil => 'esearch', > # -db => 'protein', > # -term => 'BRCA1 AND human', > # -email => 'mymail at foo.bar', > -retmax => $count > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > > > -- > Regards, > Peng chris From pengyu.ut at gmail.com Sat Jun 5 17:28:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 16:28:18 -0500 Subject: [Bioperl-l] bioperl support for running blast locally Message-ID: There is a module to run blast remotely Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and I think that it makes more sense for me to run blast locally. Is there a way to let bioperl parse the output from my local command line blast? -- Regards, Peng From florent.angly at gmail.com Sat Jun 5 18:55:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Sun, 06 Jun 2010 08:55:56 +1000 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: Message-ID: <4C0AD5FC.1070907@gmail.com> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / BlastPlus.pm Then to parse the results, you can read this: http://www.bioperl.org/wiki/HOWTO:SearchIO Florent On 06/06/2010 07:28 AM, Peng Yu wrote: > There is a module to run blast remotely > Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and > I think that it makes more sense for me to run blast locally. Is there > a way to let bioperl parse the output from my local command line > blast? > > From pengyu.ut at gmail.com Sat Jun 5 19:16:40 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:16:40 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0AD5FC.1070907@gmail.com> References: <4C0AD5FC.1070907@gmail.com> Message-ID: It seems that StandAloneBlastPlus is a higher level wrapper than BlastPlus. Is it better to use StandAloneBlastPlus? Essentially, what I need is to compare pairs of sequences. Note that I want to use the bash Process substitution to avoid generating temp files. Does StandAloneBlastPlus support this? If yes, would you please how me what command to use? blastn -query <(echo GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) -subject <(echo CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: > To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ > BlastPlus.pm > Then to parse the results, you can read this: > http://www.bioperl.org/wiki/HOWTO:SearchIO > Florent > > On 06/06/2010 07:28 AM, Peng Yu wrote: >> >> There is a module to run blast remotely >> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >> I think that it makes more sense for me to run blast locally. Is there >> a way to let bioperl parse the output from my local command line >> blast? >> >> > > -- Regards, Peng From pengyu.ut at gmail.com Sat Jun 5 19:19:06 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:19:06 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? Message-ID: http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus The following cpan link shown in the above page is not working. Could you let me know where to download the module? http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 19:57:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:57:56 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, Re: StandAloneBlastPlus, is this not covered in it's HOWTO? http://www.bioperl.org/wiki/HOWTO:BlastPlus As for CPAN doc links, the wiki page links are autogenerated via a template; unfortunately the BlastPlus code hasn't been added to CPAN yet (hence the broken link). There is a tentative plan to push through a 1.6.2 very soon, which should include this. chris On Jun 5, 2010, at 6:19 PM, Peng Yu wrote: > http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus > > The following cpan link shown in the above page is not working. Could > you let me know where to download the module? > > http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 19:59:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:59:41 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> Message-ID: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). For the rest, please see the associated documentation and the HOWTO: http://www.bioperl.org/wiki/HOWTO:BlastPlus chris On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > It seems that StandAloneBlastPlus is a higher level wrapper than > BlastPlus. Is it better to use StandAloneBlastPlus? > > Essentially, what I need is to compare pairs of sequences. Note that I > want to use the bash Process substitution to avoid generating temp > files. Does StandAloneBlastPlus support this? If yes, would you please > how me what command to use? > > blastn -query <(echo > GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) > -subject <(echo > CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) > > > On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >> BlastPlus.pm >> Then to parse the results, you can read this: >> http://www.bioperl.org/wiki/HOWTO:SearchIO >> Florent >> >> On 06/06/2010 07:28 AM, Peng Yu wrote: >>> >>> There is a module to run blast remotely >>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>> I think that it makes more sense for me to run blast locally. Is there >>> a way to let bioperl parse the output from my local command line >>> blast? >>> >>> >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 22:38:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 21:38:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch Message-ID: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: Bio::Tools::Match Bio::Tools::Phylo::Gerp Bio::Tools::Phylo::Gumby As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. chris From cjfields at illinois.edu Sat Jun 5 23:40:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 22:40:54 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch In-Reply-To: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> References: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> Message-ID: <3F0840D3-F8CF-4503-99DF-2A550788C9DE@illinois.edu> After removal and some changes for API consistency, all tests pass on the branch, so it's ready to merge. chris On Jun 5, 2010, at 9:38 PM, Chris Fields wrote: > As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. > > However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: > > Bio::Tools::Match > Bio::Tools::Phylo::Gerp > Bio::Tools::Phylo::Gumby > > As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: > > http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated > > If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. > > chris > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 08:04:22 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 14:04:22 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> Message-ID: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository?" If there is, I'm fine with dropping the in-file $Id$ rev/author/datestamp information. (Seems like that's the Way of Git, anyway). If not, though, I'm kinda inclined to keep some sort of author and datestamp in each file. I am prepared to be convinced otherwise, though. I've done a little reading on this issue, but I don't fully understand the arguments against. Dave From pengyu.ut at gmail.com Sun Jun 6 09:01:14 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 08:01:14 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run Message-ID: I downloaded bioperl-live and bioperl-run by svn. bioperl-live is installed correctly. $ echo $PERL5LIB $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Perl; print Bio::Perl->VERSION, "\n"; $ ./main.pl 1.0069 However, bioperl-run seems can be compiled but can not be installed. bioperl-run$ ./Build install Building BioPerl-Run I'm wondering how to fix the problem. -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 09:16:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:16:51 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <7120F98E-43B2-4E71-9838-F41F06D9C668@illinois.edu> Peng, Are you installing this locally? I never recommend installing the various in-development bioperl distributions system-wide unless you absolutely need them for some particular reason; it's better to keep them local if possible. chris On Jun 6, 2010, at 8:01 AM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. bioperl-live is > installed correctly. > > $ echo $PERL5LIB > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Perl; > > print Bio::Perl->VERSION, "\n"; > > $ ./main.pl > 1.0069 > > However, bioperl-run seems can be compiled but can not be installed. > > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 09:28:23 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:28:23 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. By svn from Github? > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. We'll need more information to figure out what the problem is. Can you post the whole transcript of your failed install? Dave From cjfields at illinois.edu Sun Jun 6 09:44:35 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:44:35 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> On Jun 6, 2010, at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? There is read support for using svn and github. Also experimental write support. http://github.com/blog/626-announcing-svn-support http://github.com/blog/644-subversion-write-support >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? > > > Dave Agreed. Would be more informative. chris From David.Messina at sbc.su.se Sun Jun 6 09:47:39 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:47:39 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> Message-ID: <10FD26AE-C8BD-4717-8548-7CE3548709EA@sbc.su.se> >>> I downloaded bioperl-live and bioperl-run by svn. >> >> By svn from Github? > > There is read support for using svn and github. Also experimental write support. > > http://github.com/blog/626-announcing-svn-support > http://github.com/blog/644-subversion-write-support Right. Sorry, didn't mean to imply it wasn't possible to get it from Github via svn. I was intending to confirm that he was indeed getting the latest version. (Although, now that I think about it, these day there isn't anyhere else that it's possible to get BioPerl via svn other than Github.) Dave From David.Messina at sbc.su.se Sun Jun 6 10:16:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 16:16:20 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> > My perl is installed in a directory in my home. I think that bioperl > will be installed in the directory in the perl directory in my home, > right? Hmm, I think you still have to tell Build that you want it to install in your private directory. Have you read http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA ? > BTW, the following web address better be changed to 'Using_git". > http://www.bioperl.org/wiki/Using_Subversion Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? >> Can you post the whole transcript of your failed install? > > I assume that you are asking the Build script. Please see the > attachment. Let me know if you mean something else. No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Dave From pengyu.ut at gmail.com Sun Jun 6 11:15:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 10:15:24 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >> My perl is installed in a directory in my home. I think that bioperl >> will be installed in the directory in the perl directory in my home, >> right? > > Hmm, I think you still have to tell Build that you want it to install in your private directory. > > Have you read > > http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA I actually read the description. But I don't understand why it is the case. When I download other packages from CPAN. I don't need to specify anything. They get automatically installed in a directory (I think it is site_perl?) in my local perl installation directory. Why I have to explicitly say where bioperl should be installed ? > ? > > >> BTW, the following web address better be changed to 'Using_git". >> http://www.bioperl.org/wiki/Using_Subversion > > Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. > > Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? Please see the following webpage.Search for "Using Subversion". http://www.bioperl.org/wiki/HOWTO:BlastPlus >>> Can you post the whole transcript of your failed install? >> >> I assume that you are asking the Build script. Please see the >> attachment. Let me know if you mean something else. > > No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Once, I saw some installing command after "Building BioPerl-Run" when I run '.Build install". But I can not reproduce it any more. I delete the download and run the installation process again. But it still doesn't seem to work. $ git clone git://github.com/bioperl/bioperl-run.git Initialized empty Git repository in /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ remote: Counting objects: 11230, done. remote: Compressing objects: 100% (2502/2502), done. remote: Total 11230 (delta 7360), reused 11184 (delta 7322) Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. Resolving deltas: 100% (7360/7360), done. Checking out files: 100% (379/379), done. $ perl Build.PLInstall scripts? y/n [n ] n Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ] n - will not run internet-requiring tests Creating new 'MYMETA.yml' with configuration results Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Creating new 'Build' script for 'BioPerl-Run' version '1.006900' $ ./Build manifest File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' Added to MANIFEST: AUTHORS Added to MANIFEST: Build.PL Added to MANIFEST: Changes Added to MANIFEST: DEPENDENCIES Added to MANIFEST: INSTALL ..... Added to MANIFEST: t/TCoffee.t Added to MANIFEST: t/TigrAssembler.t Added to MANIFEST: t/Tmhmm.t Added to MANIFEST: t/TribeMCL.t Added to MANIFEST: t/tRNAscanSE.t Added to MANIFEST: t/Vista.t $ ./Build install Building BioPerl-Run $ -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 12:25:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 11:25:59 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <413AB412-CE27-4091-9E94-D9A345F59AF3@illinois.edu> On Jun 6, 2010, at 10:15 AM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >>> My perl is installed in a directory in my home. I think that bioperl >>> will be installed in the directory in the perl directory in my home, >>> right? >> >> Hmm, I think you still have to tell Build that you want it to install in your private directory. >> >> Have you read >> >> http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA > > I actually read the description. But I don't understand why it is the case. > > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? That's not the point. You are not installing code from CPAN; you are installing code in development from our git/github repository. We can't always guarantee that it would pass tests, as the CPAN release does, nor should we need to. I know there is a need to install the latest and greatest bleeding-edge code, but there is a reason it's called 'bleeding edge'. It may not always pass tests, so installing it system-wide is definitely not recommended. I would go as far as saying that installing it locally is probably also not a good idea unless you know what you are doing. >> ? >> >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Looks like that was corrected to point to the proper location. I just want to point out something: we've now been on git/github for just over a month now. It's very possible there are links on the wiki that point to the older page. It's also possible to simply edit said pages to point to the proper page; it is a wiki, after all. If you see a link to the wrong page, feel free to edit it after logging in (anyone can get an account). >>>> Can you post the whole transcript of your failed install? >>> >>> I assume that you are asking the Build script. Please see the >>> attachment. Let me know if you mean something else. >> >> No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? > > Once, I saw some installing command after "Building BioPerl-Run" when > I run '.Build install". But I can not reproduce it any more. > > I delete the download and run the installation process again. But it > still doesn't seem to work. > > $ git clone git://github.com/bioperl/bioperl-run.git > Initialized empty Git repository in > /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ > remote: Counting objects: 11230, done. > remote: Compressing objects: 100% (2502/2502), done. > remote: Total 11230 (delta 7360), reused 11184 (delta 7322) > Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. > Resolving deltas: 100% (7360/7360), done. > Checking out files: 100% (379/379), done. > > $ perl Build.PLInstall scripts? y/n [n ] > n > Do you want to run tests that require connection to servers across the internet > (likely to cause some failures)? y/n [n ] > n > - will not run internet-requiring tests > Creating new 'MYMETA.yml' with configuration results > Can't find dist packages without a MANIFEST file > Run 'Build manifest' to generate one > > WARNING: Possible missing or corrupt 'MANIFEST' file. > Nothing to enter for 'provides' field in metafile. > Creating new 'Build' script for 'BioPerl-Run' version '1.006900' > > $ ./Build manifest > File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' > Added to MANIFEST: AUTHORS > Added to MANIFEST: Build.PL > Added to MANIFEST: Changes > Added to MANIFEST: DEPENDENCIES > Added to MANIFEST: INSTALL > ..... > Added to MANIFEST: t/TCoffee.t > Added to MANIFEST: t/TigrAssembler.t > Added to MANIFEST: t/Tmhmm.t > Added to MANIFEST: t/TribeMCL.t > Added to MANIFEST: t/tRNAscanSE.t > Added to MANIFEST: t/Vista.t > > $ ./Build install > Building BioPerl-Run > $ > > -- > Regards, > Peng I added a default MANIFEST, just in case. However, this shouldn't prevent installation, it just builds one for packaging up the distribution for CPAN. This does install on my machine locally (see below). If you reinstall (also demonstrated below) you won't see any install messages b/c no modules have changed from the build process. So, maybe it already installed successfully, and you haven't set the include path correctly so it isn't showing up? Make sure you are setting PERL5LIB or your 'use lib' directive to point to the proper location; in the below, that would be '/Users/cjfields/local/lib/perl5'. chris pyrimidine1:bioperl-run cjfields$ perl Build.PL --install-base ~/local/ Install scripts? y/n [n ]y Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ]y - will run internet-requiring tests Do you want to run tests requiring a valid email address? y/n [n ]y Enter email address: cjfields at bioperl.org Creating new 'MYMETA.yml' with configuration results Creating new 'Build' script for 'BioPerl-Run' version '1.006900' pyrimidine1:bioperl-run cjfields$ ./Build Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run Installing /Users/cjfields/local/man/man1/bp_bioperl_application_installer.pl.1 Installing /Users/cjfields/local/man/man1/bp_multi_hmmsearch.pl.1 Installing /Users/cjfields/local/man/man1/bp_panalysis.pl.1 Installing /Users/cjfields/local/man/man1/bp_papplmaker.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_neighbor.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_protdist.pl.1 Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/SoapEUtilities.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap/WSDL.pm .... Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::tRNAscanSE.3 Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::Vista.3 Installing /Users/cjfields/local/bin/bp_bioperl_application_installer.pl Installing /Users/cjfields/local/bin/bp_multi_hmmsearch.pl Installing /Users/cjfields/local/bin/bp_panalysis.pl Installing /Users/cjfields/local/bin/bp_papplmaker.pl Installing /Users/cjfields/local/bin/bp_run_neighbor.pl Installing /Users/cjfields/local/bin/bp_run_protdist.pl pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ cd pyrimidine1:~ cjfields$ perldoc -l Bio::Tools::Run::StandAloneBlastPlus /Users/cjfields/local/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm From David.Messina at sbc.su.se Sun Jun 6 12:26:04 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 18:26:04 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <594C1A8B-D33D-43FA-9B47-53B59F2D481C@sbc.su.se> On Jun 6, 2010, at 17:15, Peng Yu wrote: > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? Ah okay, I misunderstood. If it works for other CPAN installs, it should work for BioPerl. >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting >> Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to >> point to Using_git. May I ask where did you see ? that is, how did >> you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Thanks. > I delete the download and run the installation process again. But it > still doesn't seem to work. I'll take a look at this later. In the meantime, you can certainly do as Chris recommended earlier and not 'install' and just add bioperl-run/lib to your PERL5LIB. As he said, that's better anyway, since you can keep up-to-date with the latest bug fixes and changes by simply doing 'git pull'. Dave From David.Messina at sbc.su.se Sun Jun 6 14:29:45 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 20:29:45 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? > > We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? To anwer my own question, yes: http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob I copied the Perl script to here: http://gist.github.com/427769 If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. Dave From pengyu.ut at gmail.com Sun Jun 6 15:11:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 14:11:24 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: I don't see how StandAloneBlastPlus can help extract all the information I need. For example, I need to know the starts and the ends of the pair of sequences that match (1 and 33, and 1 and 33 in the following example). How many gaps and mismatches there are (no gaps and no mismatches in the following example)? The strand information. Would you please let me know if these are possible with StandAloneBlastPlus from git? $ blastn -query <(echo CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) -subject <(echo ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) > HWI-EAS11X_10097_4_1_1909_9532.txt $ cat HWI-EAS11X_10097_4_1_1909_9532.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 Score = 62.1 bits (33), Expect = 1e-15 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 ||||||||||||||||||||||||||||||||| Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: > StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). ?StandAloneBlast is the C-based legacy BLAST (they have different parameters). > > For the rest, please see the associated documentation and the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:BlastPlus > > chris > > On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > >> It seems that StandAloneBlastPlus is a higher level wrapper than >> BlastPlus. Is it better to use StandAloneBlastPlus? >> >> Essentially, what I need is to compare pairs of sequences. Note that I >> want to use the bash Process substitution to avoid generating temp >> files. Does StandAloneBlastPlus support this? If yes, would you please >> how me what command to use? >> >> blastn -query <(echo >> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >> -subject <(echo >> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >> >> >> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>> To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ >>> BlastPlus.pm >>> Then to parse the results, you can read this: >>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>> Florent >>> >>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>> >>>> There is a module to run blast remotely >>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>> I think that it makes more sense for me to run blast locally. Is there >>>> a way to let bioperl parse the output from my local command line >>>> blast? >>>> >>>> >>> >>> >> >> >> >> -- >> Regards, >> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 15:26:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 14:26:05 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: According to the SYNPOSIS and the HOWTO, the factory returns a $result object, which I assume is derived from Bio::SearchIO parsing. For more information on that see that relevant HOWTO, which gives some illustrative examples. http://www.bioperl.org/wiki/HOWTO:SearchIO chris On Jun 6, 2010, at 2:11 PM, Peng Yu wrote: > I don't see how StandAloneBlastPlus can help extract all the > information I need. For example, I need to know the starts and the > ends of the pair of sequences that match (1 and 33, and 1 and 33 in > the following example). How many gaps and mismatches there are (no > gaps and no mismatches in the following example)? The strand > information. > > Would you please let me know if these are possible with > StandAloneBlastPlus from git? > > $ blastn -query <(echo > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) > -subject <(echo > ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) >> HWI-EAS11X_10097_4_1_1909_9532.txt > $ cat HWI-EAS11X_10097_4_1_1909_9532.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > Score = 62.1 bits (33), Expect = 1e-15 > Identities = 33/33 (100%), Gaps = 0/33 (0%) > Strand=Plus/Minus > > Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 > ||||||||||||||||||||||||||||||||| > Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > > On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: >> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). >> >> For the rest, please see the associated documentation and the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:BlastPlus >> >> chris >> >> On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: >> >>> It seems that StandAloneBlastPlus is a higher level wrapper than >>> BlastPlus. Is it better to use StandAloneBlastPlus? >>> >>> Essentially, what I need is to compare pairs of sequences. Note that I >>> want to use the bash Process substitution to avoid generating temp >>> files. Does StandAloneBlastPlus support this? If yes, would you please >>> how me what command to use? >>> >>> blastn -query <(echo >>> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >>> -subject <(echo >>> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >>> >>> >>> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>>> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >>>> BlastPlus.pm >>>> Then to parse the results, you can read this: >>>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>>> Florent >>>> >>>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>>> >>>>> There is a module to run blast remotely >>>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>>> I think that it makes more sense for me to run blast locally. Is there >>>>> a way to let bioperl parse the output from my local command line >>>>> blast? >>>>> >>>>> >>>> >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 17:10:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 16:10:05 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> On Jun 6, 2010, at 1:29 PM, Dave Messina wrote: > > On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > >> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? >> >> We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? > > To anwer my own question, yes: > > http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob > > I copied the Perl script to here: > http://gist.github.com/427769 > > > If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. > > Dave For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: http://progit.org/book/ch7-2.html chris From David.Messina at sbc.su.se Sun Jun 6 17:27:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 23:27:50 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> Message-ID: > For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: > > http://progit.org/book/ch7-2.html Thanks for the pointer. Yeah, agreed on the date. The .gitattributes setup sounds good, particularly since it's automatic. Dave From pengyu.ut at gmail.com Sun Jun 6 18:29:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:29:39 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? Message-ID: There are many classes defined in Bio::Search, which is confusing to new users. Is there an inherentance graph and a dependency graph to help new users understand how they work? http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm For example, Bio::Search::HSP::GenericHSP is an implementation of Bio::Search::HSP::HSPI (if I'm correct), which is documented in the text. But I feel it would be much easier to see this relationship, if this is drawn graphically. -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 18:52:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:52:18 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? Message-ID: The following perl program generate tmp files at the current directory, which is annoying. Is there a way to put the tmp files in a tmp directory say /tmp? #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first.fa'); my $seq2 = Bio::Perl::read_sequence('second.fa'); print $seq1->seq, "\n"; print $seq2->seq, "\n"; my $blast_result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); -- Regards, Peng From David.Messina at sbc.su.se Sun Jun 6 19:18:28 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:18:28 +0200 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: Our class diagram is way out of date, but I believe the SearchIO part is still basically the same. http://www.bioperl.org/wiki/Class_Diagram > But I feel it would be much easier to see this relationship, if > this is drawn graphically. Absolutely. Speaking of which, this has long been on our to-do list ? would you be interested in taking a crack at this? There's also the Deobfuscator, which allows you to see all of the methods available to an object, regardless of how far up the inheritance tree the method originates: http://www.bioperl.org/wiki/Deobfuscator Dave From cjfields at illinois.edu Sun Jun 6 19:23:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:23:44 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: <13884F06-106A-4D1B-A4EB-B2AF23ACA400@illinois.edu> Peng, Within Bio::Search, the hierarchy is easy enough. I'll leave out the full namespace for now to make this easier. Each ResultI object represents a single report; it may have multiple HitI objects (the hits), which further have multiple HSPI objects (the high-scoring paired alignments). Depending on the parser and the need for additional methods, each ResultI/HitI/HSPI may be implemented generically (GenericResult/Hit/HSP) or more specifically (e.g. ModelHit), but all observe the common interface (ResultI/HitI/HSPI) methods. So, you can hierarchically iterate through all the data in a report as follows: while (my $result = $in->next_result) { # grab ResultI stuff here while (my $hit = $result->next_hit) { # grab HitI stuff here while (my $hsp = $hit->next_hsp) { # grab HSPI stuff here } } } Much of this is already in the HOWTO. Not sure how much more we can explain to you via email. If you are really concerned about the objects returned to look up specific methods, just check them with ref() to get the class. Re: module usage: the module usage and inheritance graph for BioPerl is extremely complicated, but if you have a checkout of the git repo you can generate some of these using the (completely unsupported, don't ask for help :) module_usage.pl script in the maintenance folder. I agree a simple graphic might help; feel free to contribute one if you have the time. chris On Jun 6, 2010, at 5:29 PM, Peng Yu wrote: > There are many classes defined in Bio::Search, which is confusing to > new users. Is there an inherentance graph and a dependency graph to > help new users understand how they work? > > http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm > > For example, Bio::Search::HSP::GenericHSP is an implementation of > Bio::Search::HSP::HSPI (if I'm correct), which is documented in the > text. But I feel it would be much easier to see this relationship, if > this is drawn graphically. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 19:32:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:32:57 +0200 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <2696B150-4993-4844-8FBB-A6A59944BE47@sbc.su.se> > Is there a way to put the tmp files in a > tmp directory say /tmp? Hmm, that probably shouldn't be happening. And indeed, BioPerl modules use File::Temp, which creates temp files in /tmp (or the equivalent). It's possible that it's a side effect of using Bio::Perl, which is composed of convenience methods for the beginner and is not really intended for serious use. For that reason, it may be writing in the current directory to minimize the possibility of write permissions errors which could be hard for a beginner to deal with. But that's only a guess. If you use Bio::SeqIO directly instead of read_seq and write_seq, and if you're still seeing temp files in your current directory, please let us know. Dave From cjfields at illinois.edu Sun Jun 6 19:37:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:37:32 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): Cleaning up temp files Temporary analysis files produced under a single factory instances can be unlinked by running $fac->cleanup; Tempfiles are generally not removed unless this method is explicitly called. "cleanup()" only unlinks "registered" files and databases. All temporary files are automatically registered; in particular, "anonymous" databases (such as $fac->Bio::Tools::Run::StandAloneBlastPlus->new( -db_data => 'myseqs.fas', -create => 1 ); without a "-db_name" specification) are registered for cleanup. Any file or database can be registered with an internal method: $fac->_register_temp_for_cleanup('testdb'); chris On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > The following perl program generate tmp files at the current > directory, which is annoying. Is there a way to put the tmp files in a > tmp directory say /tmp? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first.fa'); > my $seq2 = Bio::Perl::read_sequence('second.fa'); > print $seq1->seq, "\n"; > print $seq2->seq, "\n"; > > my $blast_result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sun Jun 6 20:33:59 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 19:33:59 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Chris, Sorry if I ask some question that is documented. I'm trying to read as much relevant document as I can, but I can't guarantee read everything that is relevant. I don't understand why "registered" files and databases are relevant for my use case. (BTW, what are "registered" files and what they are for?). I don't specify any database option when I call StandAloneBlastPlus in my example. If I call blast directly, I'll not get any tempfiles. Therefore, it is reasonable to expect not seeing any tempfiles with bioperl module as I understand StandAloneBlastPlus is a wrapper for blast+. What is the purpose of leaving temp files in the current directory? Is it better not to leave any tempfiles in the current directory by default? On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: > Peng, > > You really need to read all relevant documentation prior to firing off emails to the list. ?This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): > > ?Cleaning up temp files > ? ? ? Temporary analysis files produced under a single factory instances can > ? ? ? be unlinked by running > > ? ? ? ?$fac->cleanup; > > ? ? ? Tempfiles are generally not removed unless this method is explicitly > ? ? ? called. "cleanup()" only unlinks "registered" files and databases. All > ? ? ? temporary files are automatically registered; in particular, > ? ? ? "anonymous" databases (such as > > ? ? ? ?$fac->Bio::Tools::Run::StandAloneBlastPlus->new( > ? ? ? ? ?-db_data => 'myseqs.fas', > ? ? ? ? ?-create => 1 > ? ? ? ?); > > ? ? ? without a "-db_name" specification) are registered for cleanup. Any > ? ? ? file or database can be registered with an internal method: > > ? ? ? ?$fac->_register_temp_for_cleanup('testdb'); > > > > chris > > On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > >> The following perl program generate tmp files at the current >> directory, which is annoying. Is there a way to put the tmp files in a >> tmp directory say /tmp? >> >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::Tools::Run::StandAloneBlastPlus; >> use Bio::Perl; >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> my $seq1 = Bio::Perl::read_sequence('first.fa'); >> my $seq2 = Bio::Perl::read_sequence('second.fa'); >> print $seq1->seq, "\n"; >> print $seq2->seq, "\n"; >> >> my $blast_result=$factory->bl2seq(-method=>'blastn', >> ?-query=> $seq1, >> ?-subject=> $seq2 >> ); >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 21:25:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 20:25:50 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? Message-ID: It is not clear to me what is_remote is for in Bio::Location::Simple. Neither the perldoc or the following webpage discuss what it means. http://www.bioperl.org/wiki/BioPerl_Locations $ is_remote/main.pl Use of uninitialized value in print at is_remote/main.pl line 11. $ cat is_remote/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Location::Simple; my $location = Bio::Location::Simple->new(-start => 1, -end => 100, -strand => 1 ); print $location->is_remote(), "\n"; ######## I looked at the source code Simple.pm. I don't see is_remote() is defined in it. Is it deprecate? Should the document for it be removed? -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 23:03:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:03:21 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: On Jun 6, 2010, at 7:33 PM, Peng Yu wrote: > Chris, > > Sorry if I ask some question that is documented. I'm trying to read as > much relevant document as I can, but I can't guarantee read everything > that is relevant. I found the appropriate answer to your question within 2 minutes of reading your post, using a simple ack search (or grep if you prefer) on the StandAloneBlastPlus documentation, then used perldoc as previously mentioned. If you are unwilling to spend 5x that (only 10 minutes), and are unwilling to read the relevant documentation, and are so ready to admit it, why would you expect us to spend our (extremely valuable) time helping you? > I don't understand why "registered" files and databases are relevant > for my use case. (BTW, what are "registered" files and what they are > for?). I don't specify any database option when I call > StandAloneBlastPlus in my example. If I call blast directly, I'll not > get any tempfiles. Therefore, it is reasonable to expect not seeing > any tempfiles with bioperl module as I understand StandAloneBlastPlus > is a wrapper for blast+. What is the purpose of leaving temp files in > the current directory? Is it better not to leave any tempfiles in the > current directory by default? We have provided you an answer. You possibly have a point (why not remove the tempfiles), but you'll have to ask the module author(s) that for their reasoning. You can always make that suggestion, or perhaps even submit a patch, and work around the problem in the meantime. Contribute something constructive. We value that. But your posts at this point come across as rote complaining, not suggestions, and your general lack of appreciation/gratitude for any answers we've already given you does not exactly endear yourself to those whose time is very limited. chris > On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: >> Peng, >> >> You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): >> >> Cleaning up temp files >> Temporary analysis files produced under a single factory instances can >> be unlinked by running >> >> $fac->cleanup; >> >> Tempfiles are generally not removed unless this method is explicitly >> called. "cleanup()" only unlinks "registered" files and databases. All >> temporary files are automatically registered; in particular, >> "anonymous" databases (such as >> >> $fac->Bio::Tools::Run::StandAloneBlastPlus->new( >> -db_data => 'myseqs.fas', >> -create => 1 >> ); >> >> without a "-db_name" specification) are registered for cleanup. Any >> file or database can be registered with an internal method: >> >> $fac->_register_temp_for_cleanup('testdb'); >> >> >> >> chris >> >> On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: >> >>> The following perl program generate tmp files at the current >>> directory, which is annoying. Is there a way to put the tmp files in a >>> tmp directory say /tmp? >>> >>> #!/usr/bin/env perl >>> >>> use strict; >>> use warnings; >>> use Bio::Tools::Run::StandAloneBlastPlus; >>> use Bio::Perl; >>> >>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >>> >>> my $seq1 = Bio::Perl::read_sequence('first.fa'); >>> my $seq2 = Bio::Perl::read_sequence('second.fa'); >>> print $seq1->seq, "\n"; >>> print $seq2->seq, "\n"; >>> >>> my $blast_result=$factory->bl2seq(-method=>'blastn', >>> -query=> $seq1, >>> -subject=> $seq2 >>> ); >>> >>> -- >>> Regards, >>> Peng >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 23:21:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:21:56 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: Message-ID: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > It is not clear to me what is_remote is for in Bio::Location::Simple. > Neither the perldoc or the following webpage discuss what it means. > > http://www.bioperl.org/wiki/BioPerl_Locations As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. Huh. is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). That is one thing that needs additional documentation (see below). > $ is_remote/main.pl > Use of uninitialized value in print at is_remote/main.pl line 11. > $ cat is_remote/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::Location::Simple; > > my $location = Bio::Location::Simple->new(-start => 1, -end => 100, > -strand => 1 ); > > print $location->is_remote(), "\n"; > > ######## > I looked at the source code Simple.pm. I don't see is_remote() is > defined in it. Is it deprecate? Should the document for it be removed? > > -- > Regards, > Peng No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: Title : is_remote Usage : $is_remote_loc = $loc->is_remote() Function: Whether or not a location is a remote location. A location is said to be remote if it is on a different 'object' than the object which 'has' this location. Typically, features on a sequence will sometimes have a remote location, which means that the location of the feature is on a different sequence than the one that is attached to the feature. In such a case, $loc->seq_id will be different from $feat->seq_id (usually they will be the same). While this may sound weird, it reflects the location of the kind of AB18375:450-900 which can be found in GenBank/EMBL feature tables. Example : Returns : TRUE if the location is a remote location, and FALSE otherwise Args : Value to set to chris From pengyu.ut at gmail.com Sun Jun 6 23:46:04 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 22:46:04 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: > On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > >> It is not clear to me what is_remote is for in Bio::Location::Simple. >> Neither the perldoc or the following webpage discuss what it means. >> >> http://www.bioperl.org/wiki/BioPerl_Locations > > As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. ?Huh. > > is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). ?That is one thing that needs additional documentation (see below). > >> $ is_remote/main.pl >> Use of uninitialized value in print at is_remote/main.pl line 11. >> $ cat is_remote/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::Location::Simple; >> >> my $location = Bio::Location::Simple->new(-start => 1, -end => 100, >> ?-strand => 1 ); >> >> print $location->is_remote(), "\n"; >> >> ######## >> I looked at the source code Simple.pm. I don't see is_remote() is >> defined in it. Is it deprecate? Should the document for it be removed? >> >> -- >> Regards, >> Peng > > > No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. > > Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: > > ?Title ? : is_remote > ?Usage ? : $is_remote_loc = $loc->is_remote() > ?Function: Whether or not a location is a remote location. > > ? ? ? ? ? A location is said to be remote if it is on a different > ? ? ? ? ? 'object' than the object which 'has' this > ? ? ? ? ? location. Typically, features on a sequence will sometimes > ? ? ? ? ? have a remote location, which means that the location of > ? ? ? ? ? the feature is on a different sequence than the one that is > ? ? ? ? ? attached to the feature. In such a case, $loc->seq_id will > ? ? ? ? ? be different from $feat->seq_id (usually they will be the > ? ? ? ? ? same). > > ? ? ? ? ? While this may sound weird, it reflects the location of the > ? ? ? ? ? kind of AB18375:450-900 which can be found in GenBank/EMBL > ? ? ? ? ? feature tables. This explain sounds to abstract to me. Would you please give me some examples on what it means? -- Regards, Peng From cjfields at illinois.edu Mon Jun 7 00:46:13 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 23:46:13 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> On Jun 6, 2010, at 10:46 PM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: >> ...No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. >> >> Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: >> >> Title : is_remote >> Usage : $is_remote_loc = $loc->is_remote() >> Function: Whether or not a location is a remote location. >> >> A location is said to be remote if it is on a different >> 'object' than the object which 'has' this >> location. Typically, features on a sequence will sometimes >> have a remote location, which means that the location of >> the feature is on a different sequence than the one that is >> attached to the feature. In such a case, $loc->seq_id will >> be different from $feat->seq_id (usually they will be the >> same). >> >> While this may sound weird, it reflects the location of the >> kind of AB18375:450-900 which can be found in GenBank/EMBL >> feature tables. > > This explain sounds to abstract to me. Would you please give me some > examples on what it means? > > -- > Regards, > Peng Like it says; the Location indicated may not be found in the current location or group of locations, but may be located remotely (in another sequence). For instance: http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank BRCA2 has a split location, one located in this sequence record (AL137247), and one located remotely, in another sequence record (in AL445212.9): join(AL445212.9:83662..166657,101..841) In order to contain both of them together and have them splice correctly when needed, one must indicate that the sequence of interest for the location is not remote (is the current one) or is remote (and needs to be retrieved prior to additional work). chris From pengyu.ut at gmail.com Mon Jun 7 02:04:55 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 01:04:55 -0500 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? Message-ID: I have the following two sequences which don't have any hits. But the perl code gives num_hits =1 (see below). Is it a bug in parsing blast results? $ make blastn -query <(echo CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) -subject <(echo GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > HWI-EAS11X_10097_4_1_1523_15064.txt $ cat first1.fa >first1 CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC $ cat second1.fa >second1 GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG $ cat HWI-EAS11X_10097_4_1_1523_15064.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 ##### But the following code and output shows that there is one hit? $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; use Data::Dumper; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first1.fa'); my $seq2 = Bio::Perl::read_sequence('second1.fa'); my $result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; print 'ref($factory): ', ref($factory), "\n"; print 'ref($result): ', ref($result), "\n"; print "num_hits: ", $result->num_hits, "\n"; while(my $hit = $result->next_hit()) { print ref($hit), "\n"; print Dumper($hit), "\n"; } $ ./main.pl ref($factory): Bio::Tools::Run::StandAloneBlastPlus ref($result): Bio::Search::Result::BlastResult num_hits: 1 Bio::Search::Hit::BlastHit $VAR1 = bless( { '_hsps' => undef, '_iterator' => 0, '_description' => '', '_query_length' => '75', '_accession' => 'second1', '_length' => '75', '_name' => 'second1', '_rank' => 1, '_algorithm' => 'BLASTN', '_root_verbose' => 0, '_hsp_factory' => bless( { 'interface' => 'Bio::Search::HSP::HSPI', 'type' => 'Bio::Search::HSP::GenericHSP', '_loaded_types' => { 'Bio::Search::HSP::GenericHSP' => 1 }, '_root_verbose' => 0 }, 'Bio::Factory::ObjectFactory' ) }, 'Bio::Search::Hit::BlastHit' ); -- Regards, Peng From adsj at novozymes.com Mon Jun 7 11:04:44 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Mon, 07 Jun 2010 17:04:44 +0200 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels Message-ID: <87sk4ynasz.fsf@topper.koldfront.dk> Does an easy way exist to use unicode/utf-8 characters in labels on tracks with Bio::Graphics::Panel? A script like this: = = = #!/usr/bin/perl use strict; use warnings; use utf8; use Bio::Graphics::Panel; use Bio::SeqFeature::Generic; use File::Slurp; my $label='?-glucosidase'; my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); $panel->add_track($feature, -label=>$label); write_file('panel.png', $panel->png); = = = Gives me a panel.png that very much looks like the label was interpreted as something like, say, latin1, which makes sense from a quick search in the GD pod - it refers to stringFT() for using unicode characters, and a quick ack for stringFT() in Bio/Graphics/ only shows hits in DrawTransmembrane. This makes me guess the answer is no, but I thought I'd ask anyway, in case I overlooked something. Best regards, Adam -- Adam Sj?gren adsj at novozymes.com From scott at scottcain.net Mon Jun 7 11:42:28 2010 From: scott at scottcain.net (Scott Cain) Date: Mon, 7 Jun 2010 11:42:28 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Hi Adam, I don't know for sure, but I'm guessing that the reason BioGraphics doesn't use stringFT is because it requires that libgd be compiled with TrueType in order to work, and frequently, libgd isn't compiled with it, and it frequently gives people a hard time getting it compiled, and would add one more barrier to entry to people who want to use BioGraphics and GBrowse. Scott On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > ?Best regards, > > ? ? Adam > > -- > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Adam Sj?gren > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From hlapp at drycafe.net Mon Jun 7 12:14:35 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Mon, 7 Jun 2010 12:14:35 -0400 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> Message-ID: On Jun 7, 2010, at 12:46 AM, Chris Fields wrote: > For instance: > > http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank > > BRCA2 has a split location, one located in this sequence record > (AL137247), and one located remotely, in another sequence record (in > AL445212.9): I guess we should replace the sample (apparently bogus? I thought it was real.) in the doc with this one, so people can be expected to type this in at NCBI and go check it out for themselves. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From lincoln.stein at gmail.com Mon Jun 7 12:14:41 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 7 Jun 2010 12:14:41 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Unfortunately, Bio::Graphics doesn't take advantage of TrueType capabilities in GD. There were too many problems associated with installation. This could be added in some sort of generic fashion (invoke the truetype calls if GD supports it, and fallback to bitmap characters if not), but will require a lot of detailed changes to the source code. If anybody would like to volunteer to do this, I can explain the process. Lincoln On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, > -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > Best regards, > > Adam > > -- > Adam Sj?gren > adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From rondonbio at yahoo.com.br Mon Jun 7 12:33:54 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 09:33:54 -0700 (PDT) Subject: [Bioperl-l] How to do a megablast with Bioperl? Message-ID: <594075.68159.qm@web63705.mail.re1.yahoo.com> Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. thank you Rondon From David.Messina at sbc.su.se Mon Jun 7 13:30:16 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:30:16 +0200 Subject: [Bioperl-l] How to do a megablast with Bioperl? In-Reply-To: <594075.68159.qm@web63705.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> Message-ID: <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> > Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. http://www.bioperl.org/wiki/HOWTO:SearchIO From David.Messina at sbc.su.se Mon Jun 7 13:58:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:58:12 +0200 Subject: [Bioperl-l] Res: How to do a megablast with Bioperl? In-Reply-To: <952808.56069.qm@web63706.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: Hi Rondon, Please keep the list on the Cc so everyone can follow along. > Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From rondonbio at yahoo.com.br Mon Jun 7 14:01:23 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 11:01:23 -0700 (PDT) Subject: [Bioperl-l] Res: Res: How to do a megablast with Bioperl? In-Reply-To: References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: <466678.83185.qm@web63707.mail.re1.yahoo.com> Thank you! Rondon ________________________________ De: Dave Messina Para: Rondon Neto Cc: BioPerl List Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12 Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl? Hi Rondon, Please keep the list on the Cc so everyone can follow along. Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? > Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From armendarez77 at hotmail.com Mon Jun 7 14:27:33 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 11:27:33 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: Hello again, We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Thanks, Veronica > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: cjfields at illinois.edu > Date: Sat, 5 Jun 2010 07:34:34 -0500 > CC: armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > To: David.Messina at sbc.su.se > > Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > chris > > On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > > > Hi Veronica, > > > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > > > > Dave > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From David.Messina at sbc.su.se Mon Jun 7 14:41:00 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 20:41:00 +0200 Subject: [Bioperl-l] Fwd: Bio::Tools::Run::Primer3 vs Web Primer 3 References: Message-ID: <5FF5637B-2248-4E33-9F40-0048D268C7E3@sbc.su.se> On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From pengyu.ut at gmail.com Sun Jun 6 10:04:23 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 09:04:23 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: My perl is installed in a directory in my home. I think that bioperl will be installed in the directory in the perl directory in my home, right? On Sun, Jun 6, 2010 at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? I was confused. Yes, I meant git. I downloaded the files by the following commands. BTW, the following web address better be changed to 'Using_git". http://www.bioperl.org/wiki/Using_Subversion git clone git://github.com/bioperl/bioperl-live.git git clone git://github.com/bioperl/bioperl-run.git >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? I assume that you are asking the Build script. Please see the attachment. Let me know if you mean something else. -- Regards, Peng -------------- next part -------------- A non-text attachment was scrubbed... Name: Build Type: application/octet-stream Size: 1881 bytes Desc: not available URL: From dave at davemessina.com Mon Jun 7 14:33:28 2010 From: dave at davemessina.com (Dave Messina) Date: Mon, 7 Jun 2010 20:33:28 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From jessica.sun at gmail.com Mon Jun 7 15:12:42 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Mon, 7 Jun 2010 15:12:42 -0400 Subject: [Bioperl-l] Get variation included in genbank file Message-ID: Does any know how to include variation(dbSNP) in the genbank file format automatically using NM_ accession number using bioperl? thanks -- Jessica Jingping Sun From jason at bioperl.org Mon Jun 7 15:58:58 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 07 Jun 2010 12:58:58 -0700 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? In-Reply-To: References: Message-ID: <4C0D4F82.1060104@bioperl.org> You always get a hit with BL2Seq with the Query= and Subject= in the report - but you'll notice for your parsed example there are no HSPs. The fact that the bl2seq format reports the subject means you get a hit no matter what. What exactly are you trying to do this seems like a bad example. Just run a BLAST of a query against a database or look at the example reports in the t/data directory if you want to try and parse a BLAST report. If you are using short reads to do alignments to reference sequences you really don't want to be using BLAST anyways. -jason Peng Yu wrote, On 6/6/10 11:04 PM: > I have the following two sequences which don't have any hits. But the > perl code gives num_hits =1 (see below). Is it a bug in parsing blast > results? > > $ make > blastn -query<(echo > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) > -subject<(echo > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > >> HWI-EAS11X_10097_4_1_1523_15064.txt >> > $ cat first1.fa > >> first1 >> > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC > $ cat second1.fa > >> second1 >> > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG > > > $ cat HWI-EAS11X_10097_4_1_1523_15064.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > ***** No hits found ***** > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > ##### > > But the following code and output shows that there is one hit? > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > use Data::Dumper; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first1.fa'); > my $seq2 = Bio::Perl::read_sequence('second1.fa'); > > my $result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > $factory->cleanup; > > print 'ref($factory): ', ref($factory), "\n"; > print 'ref($result): ', ref($result), "\n"; > > print "num_hits: ", $result->num_hits, "\n"; > while(my $hit = $result->next_hit()) { > print ref($hit), "\n"; > print Dumper($hit), "\n"; > } > $ ./main.pl > ref($factory): Bio::Tools::Run::StandAloneBlastPlus > ref($result): Bio::Search::Result::BlastResult > num_hits: 1 > Bio::Search::Hit::BlastHit > $VAR1 = bless( { > '_hsps' => undef, > '_iterator' => 0, > '_description' => '', > '_query_length' => '75', > '_accession' => 'second1', > '_length' => '75', > '_name' => 'second1', > '_rank' => 1, > '_algorithm' => 'BLASTN', > '_root_verbose' => 0, > '_hsp_factory' => bless( { > 'interface' => > 'Bio::Search::HSP::HSPI', > 'type' => > 'Bio::Search::HSP::GenericHSP', > '_loaded_types' => { > > 'Bio::Search::HSP::GenericHSP' => 1 > }, > '_root_verbose' => 0 > }, 'Bio::Factory::ObjectFactory' ) > }, 'Bio::Search::Hit::BlastHit' ); > > > > From armendarez77 at hotmail.com Mon Jun 7 16:32:15 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 13:32:15 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? zlawson at blaze:~/source/bioperl-dev$ git-clone http://github.com/bioperl/bioperl-dev.git Initialized empty Git repository in /home/zlawson/source/bioperl-dev/bioperl-dev/.git/ Getting alternates list for http://github.com/bioperl/bioperl-dev.git Getting pack list for http://github.com/bioperl/bioperl-dev.git Getting index for pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 Getting index for pack f4ab7dabc9b978eefae48bfcbb60adf121d67544 Getting pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 which contains 773d8780bb982f858883cecca28cc45a919755bf error: Unable to get pack file http://github.com/bioperl/bioperl-dev.git/objects/pack/pack-8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767.pack transfer closed with 20247502 bytes remaining to read error: Unable to find 773d8780bb982f858883cecca28cc45a919755bf under http://github.com/bioperl/bioperl-dev.git Cannot obtain needed object 773d8780bb982f858883cecca28cc45a919755bf Thank you, Veronica > From: dave at davemessina.com > Date: Mon, 7 Jun 2010 20:33:28 +0200 > To: armendarez77 at hotmail.com > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > On Jun 7, 2010, at 8:27 PM, wrote: > > > Hello again, > > > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? > > Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: > > http://github.com/bioperl/bioperl-dev > > > Dave > > > > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > From: cjfields at illinois.edu > > > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From David.Messina at sbc.su.se Mon Jun 7 16:38:48 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 22:38:48 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> On Jun 7, 2010, at 10:32 PM, wrote: > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave From David.Messina at sbc.su.se Mon Jun 7 17:18:03 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 23:18:03 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: Message-ID: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Hi Jessica, > Does any know how to include variation(dbSNP) in the genbank file format > automatically using NM_ accession number using bioperl? I'm not sure I understand the question. As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. More information here: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook If that's not what you're after, could you clarify what you want to do? Dave From Russell.Smithies at agresearch.co.nz Mon Jun 7 17:27:51 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 09:27:51 +1200 Subject: [Bioperl-l] new record? In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Is there a class assignment due? I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From jay at jays.net Mon Jun 7 19:38:00 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 7 Jun 2010 18:38:00 -0500 Subject: [Bioperl-l] new record? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Message-ID: <7BEC3D64-7C3E-4F77-898A-103707DEAD3C@jays.net> On Jun 7, 2010, at 4:27 PM, Smithies, Russell wrote: > Is there a class assignment due? > I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) Join us in IRC for some peace and quiet. :) http://bioperl.org/wiki/IRC Jay Hannah Email Haters United Against Icky Email - Eww! http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Mon Jun 7 21:14:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 20:14:50 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? (Bio::Seq::Quality) Message-ID: Hello All, I want to retrieve the original encoded quality string. But it seems that Bio::Seq::Quality has already converted them into numerical array. Is there a method that can help retrieve the original encoded quality string such as "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb"? -- Regards, Peng $ cat main.fastq @HWI-EAS11X_10097:4:1:1909:9532#0/1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC + ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb @HWI-EAS11X_10097:4:1:1948:6460#0/1 CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGAT + dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBBB @HWI-EAS11X_10097:4:1:1986:2311#0/1 CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT + effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL] $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::SeqIO; my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq-illumina'); while (my $seq = $in->next_seq()) { print ref($seq), "\n"; print $seq->qual_text, "\n"; } $ ./main.pl Bio::Seq::Quality 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 25 20 30 12 20 34 Bio::Seq::Quality 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 31 2 2 2 2 2 Bio::Seq::Quality 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 25 29 12 26 12 29 From dimitark at bii.a-star.edu.sg Mon Jun 7 22:02:31 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 10:02:31 +0800 Subject: [Bioperl-l] about blast Message-ID: <4C0DA4B7.9000009@bii.a-star.edu.sg> Hi guys, i stumbled upon a problem. How can i run a psiblast with StandAloneBlastPlus without the query? I mean in normal psiblast there is a possibility that one can actually blast with the option '-in_pssm' instead of query. Of course first you need to run a psiblast with more than one iterations with option '-out_pssm' which produces the file which can be used by '-in_pssm'. Now in BioPerl i removed my query from the options and i got: ---------- MSG: Blast run: query data required, use -query STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::Tools::Run::StandAloneBlastPlus::run /usr/lib64/perl5/site_perl/5.10.0/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:216 ---------- Somehow it would be nice to check the method args in the module and when there is the option '-in_pssm' the check for query should be different(opposite to the one now). I hope i made it clear :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Mon Jun 7 22:59:34 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 14:59:34 +1200 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> A bit hacky and there's probably a "proper" way to do it but this works: while (my $seq = $in->next_dataset()) { print %{$seq}->{'-id'},"\n"; print %{$seq}->{'-raw_quality'},"\n"; print %{$seq}->{'-seq'},"\n"; print join ' ',@{ %{$seq}->{'-qual'}},"\n"; } > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Tuesday, 8 June 2010 1:15 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to print encoded fastq quality string? > (Bio::Seq::Quality) > > Hello All, > > I want to retrieve the original encoded quality string. But it seems > that Bio::Seq::Quality has already converted them into numerical > array. Is there a method that can help retrieve the original encoded > quality string such as > "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L > Tb"? > > -- > Regards, > Peng > > $ cat main.fastq > @HWI-EAS11X_10097:4:1:1909:9532#0/1 > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT > C > + > ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT > b > @HWI-EAS11X_10097:4:1:1948:6460#0/1 > CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA > T > + > dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB > B > @HWI-EAS11X_10097:4:1:1986:2311#0/1 > CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA > T > + > effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL > ] > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::SeqIO; > > my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- > illumina'); > > while (my $seq = $in->next_seq()) { > print ref($seq), "\n"; > print $seq->qual_text, "\n"; > } > $ ./main.pl > Bio::Seq::Quality > 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 > 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 > 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 > 25 20 30 12 20 34 > Bio::Seq::Quality > 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 > 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 > 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 > 31 2 2 2 2 2 > Bio::Seq::Quality > 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 > 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 > 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 > 25 29 12 26 12 29 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Mon Jun 7 23:17:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:17:08 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> Message-ID: <1B63775A-EC2A-4BC2-9F4D-47EDEB101B7B@illinois.edu> Yes, this is the way to currently do it from the hash ref, but the actual key/value pairings there may change depending on a few things. I'm probably going to get something started up amongst the various Bio* to see if we can standardize generically parsing this data into somewhat standardized data structures, both for downstream use (creating objects) and other purposes. The current k/v pairs won't change until that happens, but if we manage to come up with some standard I assume we will change them accordingly. chris On Jun 7, 2010, at 9:59 PM, Smithies, Russell wrote: > A bit hacky and there's probably a "proper" way to do it but this works: > > > while (my $seq = $in->next_dataset()) { > print %{$seq}->{'-id'},"\n"; > print %{$seq}->{'-raw_quality'},"\n"; > print %{$seq}->{'-seq'},"\n"; > print join ' ',@{ %{$seq}->{'-qual'}},"\n"; > } > > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Tuesday, 8 June 2010 1:15 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to print encoded fastq quality string? >> (Bio::Seq::Quality) >> >> Hello All, >> >> I want to retrieve the original encoded quality string. But it seems >> that Bio::Seq::Quality has already converted them into numerical >> array. Is there a method that can help retrieve the original encoded >> quality string such as >> "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L >> Tb"? >> >> -- >> Regards, >> Peng >> >> $ cat main.fastq >> @HWI-EAS11X_10097:4:1:1909:9532#0/1 >> CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT >> C >> + >> ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT >> b >> @HWI-EAS11X_10097:4:1:1948:6460#0/1 >> CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA >> T >> + >> dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB >> B >> @HWI-EAS11X_10097:4:1:1986:2311#0/1 >> CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA >> T >> + >> effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL >> ] >> $ cat main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::SeqIO; >> >> my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- >> illumina'); >> >> while (my $seq = $in->next_seq()) { >> print ref($seq), "\n"; >> print $seq->qual_text, "\n"; >> } >> $ ./main.pl >> Bio::Seq::Quality >> 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 >> 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 >> 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 >> 25 20 30 12 20 34 >> Bio::Seq::Quality >> 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 >> 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 >> 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 >> 31 2 2 2 2 2 >> Bio::Seq::Quality >> 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 >> 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 >> 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 >> 25 29 12 26 12 29 >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From dimitark at bii.a-star.edu.sg Mon Jun 7 23:22:04 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 11:22:04 +0800 Subject: [Bioperl-l] more problems with blast Message-ID: <4C0DB75C.6010901@bii.a-star.edu.sg> hi guys, im sorry but i got another problem. So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: ---- MSG: no data for midline Query ------------------------------------------------------------ STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 ---- so there are couple of places where the alignments look like the following (i put here only the problem part): --- Query ------------------------------------------------------------ Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 --- My code for running psiblast: ---- my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); system(@args) == 0 or die "system @args failed: $!"; my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); $blastreport=$report->next_result; ---- Thats not nice :) But how can i go around that stuff so i can get the file parsed? Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From cjfields at illinois.edu Mon Jun 7 23:44:02 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:44:02 -0500 Subject: [Bioperl-l] more problems with blast In-Reply-To: <4C0DB75C.6010901@bii.a-star.edu.sg> References: <4C0DB75C.6010901@bii.a-star.edu.sg> Message-ID: <37AA42E4-1783-47DA-853E-9D8C90FCFE81@illinois.edu> This parsing issue is due to changes in BLAST+, but should be fixed in the latest github code. Can you run a clean checkout and test this? chris On Jun 7, 2010, at 10:22 PM, Dimitar Kenanov wrote: > hi guys, > im sorry but i got another problem. > So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: > ---- > MSG: no data for midline Query ------------------------------------------------------------ > STACK: Error::throw > STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 > STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 > ---- > > so there are couple of places where the alignments look like the following (i put here only the problem part): > --- > Query ------------------------------------------------------------ > > Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 > --- > > My code for running psiblast: > ---- > my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); > system(@args) == 0 or die "system @args failed: $!"; > my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); > $blastreport=$report->next_result; > ---- > > Thats not nice :) But how can i go around that stuff so i can get the file parsed? > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Tue Jun 8 07:35:23 2010 From: jay at jays.net (Jay Hannah) Date: Tue, 8 Jun 2010 06:35:23 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <20100608104921.493F1422B7@smtp1.rs.github.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> Message-ID: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb > http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb > Author: Florent Angly > Date: 2010-06-08 (Tue, 08 Jun 2010) > > Merge branch 'master' of github.com:bioperl/bioperl-live I'm fascinated by these commits, and my git-fu is still weak. I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). Am I reading that correctly? I find that history very confusing. In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). git remote add rkhaja git://github.com/rkhaja/bioperl-live.git git fetch rkhaja git checkout -b rkhaja-merge rkhaja/master git rebase master git checkout master git merge rkhaja-merge git branch -d rkhaja-merge That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. Thanks, Jay Hannah seeker of git enlightenment http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 09:07:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 15:07:29 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276002449.6704.27.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 06:35 -0500, Jay Hannah wrote: > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. Yes, that's just what's happening here. > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. So the question if this is the "better" way of doing things depends on what you're aiming for. At Samba, we have decided in trying to keep the history linear by using the rebase method you outlined above. This is mostly based on the reasoning that nobody cares about our private git trees we have on our development machines. If you're actively developing code in multiple public branches, like e.g. the Linux kernel does, it might be interesting to preserve where these branches split and merge. Personally, I like the readable history the rebasing gives me. Additionally, if you write only a few patches, and pull often, you'll end up with a high "merge commit"/"real commit" ratio, aka "noise". :) Hope this helps, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From cjfields at illinois.edu Tue Jun 8 09:55:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 08:55:51 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 6:35 AM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live > > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. Yes, via git pull. > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? This is probably the best way, sure, to avoid those additional 'Merge branch' messages. The rebase is the key part, which is where one is just setting the current branch pointer to point to the same place as master HEAD. So, what would be the workflow for a simple commit like florent's? Or one from a topic branch? Maybe something to add to the 'Using git' page? > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah I think we all are :> chris From hlapp at drycafe.net Tue Jun 8 11:44:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Tue, 8 Jun 2010 11:44:46 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Tue Jun 8 11:59:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 10:59:24 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <26543D06-6211-498D-A6BE-89E99705074C@illinois.edu> On Jun 8, 2010, at 10:44 AM, Hilmar Lapp wrote: > On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge > > > When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. > > -hilmar Good idea. Also, one of the key distinctions we also need to make clear is how branches differ on svn and git (and why it is easy to branch with git). However, I don't want to necessarily repeat documentation that is better described elsewhere, so maybe a brief explanation of the above with links to Pro Git (http://progit.org/book/) or other resources? Can't recommend that book enough... chris From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 12:25:51 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 18:25:51 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276014351.6704.36.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 11:44 -0400, Hilmar Lapp wrote: > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git This adds rkhaja's github fork of bioperl-live as a remote. You only need to do this once per repository (read "checkout") and remote. If this was a new repository, it now has the "origin" remote pointing to where it was cloned from and the "rkhaja" remote pointing to rkhaja's fork. > > git fetch rkhaja This gets the changes from the rkhaja remote. If you want to keep a lot of different remotes up-to-date, I suggest using git remote update instead, which updates all the remotes. > > git checkout -b rkhaja-merge rkhaja/master This creates a new branch called "rkhaja-merge" based on the "master" branch in the "rkhaja" remote, and changes to that branch. > > git rebase master This basically removes all the patches from the current branch up to the point where it diverged from the "master" branch, forwards the current branch to the tip of the "master" branch and then reapplies all the patches it removed, so they're now on top of the "master" branch. This allows you to do a fast-forward push of them later (read, no need to do a merge commit). > > git checkout master This switches back to the master branch. > > git merge rkhaja-merge This now merges over the changes of the "rkhaja-merge" branch. As all of these changes are on top of the current branch, they can be fast-forwarded to, no merge commit is created. > > git branch -d rkhaja-merge This removes the rkhaja-merge branch, to clean up. git branch -d will refuse to delete a branch that has objects not in your current branch, forcing you to use git br -D instead if you really know what you're doing. > > When this gets adopted and documented, it'd be really great to > annotate each line with what it is motivated by (i.e., why do this), > as otherwise this sequence reads rather obtuse to probably most people > except the fully git initiated. HTH, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From florent.angly at gmail.com Tue Jun 8 19:53:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Wed, 09 Jun 2010 09:53:56 +1000 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <4C0ED814.5070004@gmail.com> For the record, this is what I have been doing: I have my git clone to get my local git repository. I make changes to the BioPerl code, then git commit I make more changes, then git commit Regularly, I do git pull to keep my repository up-to-date Eventually, I git push my changes upstream. I am not too familiar with git but I think this is essentially the easy steps describes on the wiki. If it's better to explicitely make a new branch (not 'master'), let me know. I just don't see the advantage for me. Florent On 06/08/2010 09:35 PM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live >> > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. > > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From pengyu.ut at gmail.com Tue Jun 8 21:00:07 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 20:00:07 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? Message-ID: Hi, I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following command. blastn -task blastn -query first.fa -subject second.fa I tried the following code, which works like without the '-task blastn' option. Would you please let me know how to supply the option in Bio::Tools::Run::StandAloneBlastPlus? my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $result=$factory->bl2seq( -method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; Thank you for you help! -- Regards, Peng From razi.khaja at gmail.com Tue Jun 8 21:18:07 2010 From: razi.khaja at gmail.com (Razi Khaja) Date: Tue, 8 Jun 2010 21:18:07 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <4C0ED814.5070004@gmail.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> <4C0ED814.5070004@gmail.com> Message-ID: This is awesome! Looks like my contributions became a topic of conversation overnight. Razi On Tue, Jun 8, 2010 at 7:53 PM, Florent Angly wrote: > For the record, this is what I have been doing: > I have my git clone to get my local git repository. > I make changes to the BioPerl code, then git commit > I make more changes, then git commit > Regularly, I do git pull to keep my repository up-to-date > Eventually, I git push my changes upstream. > > I am not too familiar with git but I think this is essentially the easy > steps describes on the wiki. If it's better to explicitely make a new branch > (not 'master'), let me know. I just don't see the advantage for me. > > Florent > > > > On 06/08/2010 09:35 PM, Jay Hannah wrote: > >> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> >> >>> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >>> >>> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >>> Author: Florent Angly >>> Date: 2010-06-08 (Tue, 08 Jun 2010) >>> >>> Merge branch 'master' of github.com:bioperl/bioperl-live >>> >>> >> I'm fascinated by these commits, and my git-fu is still weak. >> >> I think what's happening here is that any time anyone commits anything >> fangly is merging those changes into his own repo, which he then merges back >> to bioperl/bioperl-live again. >> >> So fangly's procedure (whatever it is), is re-committing other people's >> commits? Making history twice as long with (empty?) "Merge branch 'master'" >> messages? The diff of these commits reports that fangly is the author of >> other people's changes(!) yet somehow git annotate still reports that >> t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday >> (correct). >> >> Am I reading that correctly? I find that history very confusing. >> >> In #moose they taught me to merge other people's commits using the >> procedure below. This is what I did yesterday to merge rkhaja/bioperl-live >> into bioperl/bioperl-live (per conversations in IRC). >> >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge >> >> That procedure did not create a "Merge branch 'master'" commit. So is that >> procedure cleaner than fangly's? Is it the rebase command that makes the >> difference? >> >> I'm not picking on fangly here, I'm simply struggling to improve my own >> git-fu. >> >> Thanks, >> >> Jay Hannah >> seeker of git enlightenment >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 8 21:28:03 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 13:28:03 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Have you read the docs? http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Wednesday, 9 June 2010 1:00 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > Hi, > > I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > command. > > blastn -task blastn -query first.fa -subject second.fa > > > I tried the following code, which works like without the '-task > blastn' option. Would you please let me know how to supply the option > in Bio::Tools::Run::StandAloneBlastPlus? > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > my $result=$factory->bl2seq( > -method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > $factory->cleanup; > > Thank you for you help! > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 8 22:20:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 21:20:39 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell wrote: > Have you read the docs? > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Yes. But they don't say how to supply option '-task blastn' to blastn. I tried my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); But it doesn't work. > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > --Russell > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> Hi, >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> command. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> I tried the following code, which works like without the '-task >> blastn' option. Would you please let me know how to supply the option >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> ? my $result=$factory->bl2seq( >> ? ? -method=>'blastn', >> ? ? -query=> $seq1, >> ? ? -subject=> $seq2 >> ? ); >> ? $factory->cleanup; >> >> Thank you for you help! >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:09:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:09:33 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Why are you trying to supply option '-task blastn' ?? I think the docs make it fairly clear that this is not one of the available parameters. The option " -method => 'blastn' " (as detailed in the docs) is the one to use. http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html # create a factory: $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); # do a bl2seq $fac->bl2seq( -method => 'blastn', -query => $seq_object_1, -subject => $seq_object_2 ); Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 2:21 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > wrote: > > Have you read the docs? > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > > Yes. But they don't say how to supply option '-task blastn' to blastn. I > tried > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); > > But it doesn't work. > > > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > > I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > > > --Russell > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> To: bioperl-l at lists.open-bio.org > >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> Hi, > >> > >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > >> command. > >> > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> > >> I tried the following code, which works like without the '-task > >> blastn' option. Would you please let me know how to supply the option > >> in Bio::Tools::Run::StandAloneBlastPlus? > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> ? my $result=$factory->bl2seq( > >> ? ? -method=>'blastn', > >> ? ? -query=> $seq1, > >> ? ? -subject=> $seq2 > >> ? ); > >> ? $factory->cleanup; > >> > >> Thank you for you help! > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:12:12 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:12:12 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: See the help page of blastn. By default blastn use the option "-task megablast", which is less sensitive than the option "-task blastn". $ blastn -help .... -task Task to execute Default = `megablast' ... On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell wrote: > Why are you trying to supply option '-task blastn' ?? > I think the docs make it fairly clear that this is not one of the available parameters. > The option " -method => 'blastn' " (as detailed in the docs) is the one to use. > http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > # create a factory: > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > # do a bl2seq > ?$fac->bl2seq( -method => 'blastn', > ? ? ? ? ? ? ? -query => $seq_object_1, > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. > > --Russell > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> wrote: >> > Have you read the docs? >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. I >> tried >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); >> >> But it doesn't work. >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. >> >> > --Russell >> > >> >> -----Original Message----- >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> To: bioperl-l at lists.open-bio.org >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> Hi, >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> >> command. >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> blastn' option. Would you please let me know how to supply the option >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> ? my $result=$factory->bl2seq( >> >> ? ? -method=>'blastn', >> >> ? ? -query=> $seq1, >> >> ? ? -subject=> $seq2 >> >> ? ); >> >> ? $factory->cleanup; >> >> >> >> Thank you for you help! >> >> >> >> -- >> >> Regards, >> >> Peng >> >> _______________________________________________ >> >> Bioperl-l mailing list >> >> Bioperl-l at lists.open-bio.org >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > ======================================================================= >> > Attention: The information contained in this message and/or attachments >> > from AgResearch Limited is intended only for the persons or entities >> > to which it is addressed and may contain confidential and/or privileged >> > material. Any review, retransmission, dissemination or other use of, or >> > taking of any action in reliance upon, this information by persons or >> > entities other than the intended recipients is prohibited by AgResearch >> > Limited. If you have received this message in error, please notify the >> > sender immediately. >> > ======================================================================= >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:31:54 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:31:54 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:12 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > See the help page of blastn. By default blastn use the option "-task > megablast", which is less sensitive than the option "-task blastn". > > $ blastn -help > .... > -task 'megablast' 'vecscreen' > > Task to execute > Default = `megablast' > ... > > On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > wrote: > > Why are you trying to supply option '-task blastn' ?? > > I think the docs make it fairly clear that this is not one of the > available parameters. > > The option " -method => 'blastn' " (as detailed in the docs) is the one > to use. > > http://doc.bioperl.org/releases/bioperl-current/bioperl- > run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > > > # create a factory: > > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > > > # do a bl2seq > > ?$fac->bl2seq( -method => 'blastn', > > ? ? ? ? ? ? ? -query => $seq_object_1, > > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is > completely broken (which is possible as it's development code) something > similar to the example should work. > > > > --Russell > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> wrote: > >> > Have you read the docs? > >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> > >> Yes. But they don't say how to supply option '-task blastn' to blastn. > I > >> tried > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > task='blastn'); > >> > >> But it doesn't work. > >> > >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > >> > >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > problem. > >> > >> > --Russell > >> > > >> >> -----Original Message----- > >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> To: bioperl-l at lists.open-bio.org > >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> Hi, > >> >> > >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > following > >> >> command. > >> >> > >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> > >> >> > >> >> I tried the following code, which works like without the '-task > >> >> blastn' option. Would you please let me know how to supply the > option > >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> ? my $result=$factory->bl2seq( > >> >> ? ? -method=>'blastn', > >> >> ? ? -query=> $seq1, > >> >> ? ? -subject=> $seq2 > >> >> ? ); > >> >> ? $factory->cleanup; > >> >> > >> >> Thank you for you help! > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> >> _______________________________________________ > >> >> Bioperl-l mailing list > >> >> Bioperl-l at lists.open-bio.org > >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > ======================================================================= > >> > Attention: The information contained in this message and/or > attachments > >> > from AgResearch Limited is intended only for the persons or entities > >> > to which it is addressed and may contain confidential and/or > privileged > >> > material. Any review, retransmission, dissemination or other use of, > or > >> > taking of any action in reliance upon, this information by persons or > >> > entities other than the intended recipients is prohibited by > AgResearch > >> > Limited. If you have received this message in error, please notify > the > >> > sender immediately. > >> > > ======================================================================= > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:36:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:36:50 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: I made a wrapper. Then I call bl2seq in bioperl. The result changes, which means bioperl call blastn rather than bl2seq in the command line. The results are consistent between bioperl and blastn command line. $ cat `which blastn` #!/usr/bin/env bash /myinstallation/blastn -task blastn $@ On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell wrote: > Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) > > If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? > When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " > > > > --Russell > > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> See the help page of blastn. By default blastn use the option "-task >> megablast", which is less sensitive than the option "-task blastn". >> >> $ blastn -help >> .... >> ?-task > ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> ? ? ?Task to execute >> ? ? ?Default = `megablast' >> ... >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> wrote: >> > Why are you trying to supply option '-task blastn' ?? >> > I think the docs make it fairly clear that this is not one of the >> available parameters. >> > The option " -method => 'blastn' " (as detailed in the docs) is the one >> to use. >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> > >> > # create a factory: >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> > >> > # do a bl2seq >> > ?$fac->bl2seq( -method => 'blastn', >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is >> completely broken (which is possible as it's development code) something >> similar to the example should work. >> > >> > --Russell >> > >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> To: Smithies, Russell >> >> Cc: bioperl-l at lists.open-bio.org >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> wrote: >> >> > Have you read the docs? >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. >> I >> >> tried >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> task='blastn'); >> >> >> >> But it doesn't work. >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my >> problem. >> >> >> >> > --Russell >> >> > >> >> >> -----Original Message----- >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> Hi, >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the >> following >> >> >> command. >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> >> blastn' option. Would you please let me know how to supply the >> option >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> ? my $result=$factory->bl2seq( >> >> >> ? ? -method=>'blastn', >> >> >> ? ? -query=> $seq1, >> >> >> ? ? -subject=> $seq2 >> >> >> ? ); >> >> >> ? $factory->cleanup; >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> >> _______________________________________________ >> >> >> Bioperl-l mailing list >> >> >> Bioperl-l at lists.open-bio.org >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > >> ======================================================================= >> >> > Attention: The information contained in this message and/or >> attachments >> >> > from AgResearch Limited is intended only for the persons or entities >> >> > to which it is addressed and may contain confidential and/or >> privileged >> >> > material. Any review, retransmission, dissemination or other use of, >> or >> >> > taking of any action in reliance upon, this information by persons or >> >> > entities other than the intended recipients is prohibited by >> AgResearch >> >> > Limited. If you have received this message in error, please notify >> the >> >> > sender immediately. >> >> > >> ======================================================================= >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:47:25 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:47:25 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> I really think you need to spend more time reading and less time emailing. http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 The BLAST+ package includes the ability to compare two or more sequences to each other in each of the search programs. Using the -subject option instead of the -db will cause any of the search programs to behave as a BLAST 2 sequences program. This eliminates the need for the BLAST 2 sequences utility (bl2seq) included in the traditional BLAST package. While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a wrapper as there's no longer a bl2seq executable as there was with the older version of BLAST. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:37 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I made a wrapper. Then I call bl2seq in bioperl. The result changes, > which means bioperl call blastn rather than bl2seq in the command > line. The results are consistent between bioperl and blastn command > line. > > $ cat `which blastn` > #!/usr/bin/env bash > > /myinstallation/blastn -task blastn $@ > > > On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > wrote: > > Without digging thru the code, I think the developer can call the > parameters whatever he likes and if he wants to use "-method " instead of > "-task " there's probably a good reason (right MAJ?) > > > > If you write code as in the docs, does it give you the same results as > when you run bl2seq manually from the command line? > > When you run it via BioPerl, does " -method => 'blastn' " give you a > different result to " -method => 'megablast' " or " -method => 'dc- > megablast' " > > > > > > > > --Russell > > > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> See the help page of blastn. By default blastn use the option "-task > >> megablast", which is less sensitive than the option "-task blastn". > >> > >> $ blastn -help > >> .... > >> ?-task megablast' > >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> ? ? ?Task to execute > >> ? ? ?Default = `megablast' > >> ... > >> > >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> wrote: > >> > Why are you trying to supply option '-task blastn' ?? > >> > I think the docs make it fairly clear that this is not one of the > >> available parameters. > >> > The option " -method => 'blastn' " (as detailed in the docs) is the > one > >> to use. > >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> > > >> > # create a factory: > >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> > > >> > # do a bl2seq > >> > ?$fac->bl2seq( -method => 'blastn', > >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> > > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus > is > >> completely broken (which is possible as it's development code) > something > >> similar to the example should work. > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> wrote: > >> >> > Have you read the docs? > >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> > >> >> Yes. But they don't say how to supply option '-task blastn' to > blastn. > >> I > >> >> tried > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> task='blastn'); > >> >> > >> >> But it doesn't work. > >> >> > >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > objects? > >> >> > >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> problem. > >> >> > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option > from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> Hi, > >> >> >> > >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> following > >> >> >> command. > >> >> >> > >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> > >> >> >> > >> >> >> I tried the following code, which works like without the '-task > >> >> >> blastn' option. Would you please let me know how to supply the > >> option > >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> ? my $result=$factory->bl2seq( > >> >> >> ? ? -method=>'blastn', > >> >> >> ? ? -query=> $seq1, > >> >> >> ? ? -subject=> $seq2 > >> >> >> ? ); > >> >> >> ? $factory->cleanup; > >> >> >> > >> >> >> Thank you for you help! > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> >> _______________________________________________ > >> >> >> Bioperl-l mailing list > >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> > > >> ======================================================================= > >> >> > Attention: The information contained in this message and/or > >> attachments > >> >> > from AgResearch Limited is intended only for the persons or > entities > >> >> > to which it is addressed and may contain confidential and/or > >> privileged > >> >> > material. Any review, retransmission, dissemination or other use > of, > >> or > >> >> > taking of any action in reliance upon, this information by persons > or > >> >> > entities other than the intended recipients is prohibited by > >> AgResearch > >> >> > Limited. If you have received this message in error, please notify > >> the > >> >> > sender immediately. > >> >> > > >> ======================================================================= > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:58:09 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:58:09 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> I've lost track of what your main problem is, please restate your original question? I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or what part of the documentation is incorrect? --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:53 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I knew this I should use blastn as bl2seq command is not available in > BLAST+. I'm not sure what you think I should read? > > On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > wrote: > > I really think you need to spend more time reading and less time > emailing. > > > > http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > > The BLAST+ package includes the ability to compare two or more sequences > to each other in each of the search programs. Using the -subject ?option > instead of the -db will cause any of the search programs to behave as a > BLAST 2 sequences program. This eliminates the need for the BLAST 2 > sequences utility (bl2seq) included in the traditional BLAST package. > > > > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a > wrapper as there's no longer a bl2seq executable as there was with the > older version of BLAST. > > > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I made a wrapper. Then I call bl2seq in bioperl. The result changes, > >> which means bioperl call blastn rather than bl2seq in the command > >> line. The results are consistent between bioperl and blastn command > >> line. > >> > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> wrote: > >> > Without digging thru the code, I think the developer can call the > >> parameters whatever he likes and if he wants to use "-method " instead > of > >> "-task " there's probably a good reason (right MAJ?) > >> > > >> > If you write code as in the docs, does it give you the same results > as > >> when you run bl2seq manually from the command line? > >> > When you run it via BioPerl, does " -method => 'blastn' " give you a > >> different result to " -method => 'megablast' " or " -method => 'dc- > >> megablast' " > >> > > >> > > >> > > >> > --Russell > >> > > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> See the help page of blastn. By default blastn use the option "-task > >> >> megablast", which is less sensitive than the option "-task blastn". > >> >> > >> >> $ blastn -help > >> >> .... > >> >> ?-task >> megablast' > >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> ? ? ?Task to execute > >> >> ? ? ?Default = `megablast' > >> >> ... > >> >> > >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> wrote: > >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> > I think the docs make it fairly clear that this is not one of the > >> >> available parameters. > >> >> > The option " -method => 'blastn' " (as detailed in the docs) is > the > >> one > >> >> to use. > >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> > > >> >> > # create a factory: > >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> > > >> >> > # do a bl2seq > >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> > > >> >> > Unless I've missed something and > Bio::Tools::Run::StandAloneBlastPlus > >> is > >> >> completely broken (which is possible as it's development code) > >> something > >> >> similar to the example should work. > >> >> > > >> >> > --Russell > >> >> > > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Have you read the docs? > >> >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> > >> >> >> Yes. But they don't say how to supply option '-task blastn' to > >> blastn. > >> >> I > >> >> >> tried > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> task='blastn'); > >> >> >> > >> >> >> But it doesn't work. > >> >> >> > >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > >> objects? > >> >> >> > >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> >> problem. > >> >> >> > >> >> >> > --Russell > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > option > >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> Hi, > >> >> >> >> > >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> >> following > >> >> >> >> command. > >> >> >> >> > >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> > >> >> >> >> > >> >> >> >> I tried the following code, which works like without the '- > task > >> >> >> >> blastn' option. Would you please let me know how to supply the > >> >> option > >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> ? ); > >> >> >> >> ? $factory->cleanup; > >> >> >> >> > >> >> >> >> Thank you for you help! > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> >> _______________________________________________ > >> >> >> >> Bioperl-l mailing list > >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> > > >> >> > ======================================================================= > >> >> >> > Attention: The information contained in this message and/or > >> >> attachments > >> >> >> > from AgResearch Limited is intended only for the persons or > >> entities > >> >> >> > to which it is addressed and may contain confidential and/or > >> >> privileged > >> >> >> > material. Any review, retransmission, dissemination or other > use > >> of, > >> >> or > >> >> >> > taking of any action in reliance upon, this information by > persons > >> or > >> >> >> > entities other than the intended recipients is prohibited by > >> >> AgResearch > >> >> >> > Limited. If you have received this message in error, please > notify > >> >> the > >> >> >> > sender immediately. > >> >> >> > > >> >> > ======================================================================= > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 00:10:46 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 16:10:46 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 4:10 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I think it is better to document the mapping between blast options and > bioperl options. I searched 'task', but I don't find anything. Thank > you for letting me know. > > On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell > wrote: > > Bioperl's equivalent is blastn -task blastn -query first.fa -subject > second.fa > > We've just used 'method' instead of 'task'. > > > > You can always use the legacy_blast.pl script that comes with blast+ > then you can just use your old bl2seq commands. > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 4:03 p.m. > >> To: Smithies, Russell > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I've solved my problem by using the wrapper. Note that this is a hack > >> as it is not done in bioperl. > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> Anyway, I restate my original problem below. > >> > >> bioperl's bl2seq by default is equivalent to the following command. > >> blastn -query first.fa -subject second.fa > >> > >> I want to add the option '-task blastn'. > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> But I don't find such option in bioperl's bl2seq. > >> > >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell > >> wrote: > >> > I've lost track of what your main problem is, please restate your > >> original question? > >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or > what > >> part of the documentation is incorrect? > >> > > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. > >> >> To: Smithies, Russell > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> I knew this I should use blastn as bl2seq command is not available > in > >> >> BLAST+. I'm not sure what you think I should read? > >> >> > >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > >> >> wrote: > >> >> > I really think you need to spend more time reading and less time > >> >> emailing. > >> >> > > >> >> > > >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > >> >> > The BLAST+ package includes the ability to compare two or more > >> sequences > >> >> to each other in each of the search programs. Using the -subject > >> ?option > >> >> instead of the -db will cause any of the search programs to behave > as a > >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 > >> >> sequences utility (bl2seq) included in the traditional BLAST > package. > >> >> > > >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just > a > >> >> wrapper as there's no longer a bl2seq executable as there was with > the > >> >> older version of BLAST. > >> >> > > >> >> > > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result > changes, > >> >> >> which means bioperl call blastn rather than bl2seq in the command > >> >> >> line. The results are consistent between bioperl and blastn > command > >> >> >> line. > >> >> >> > >> >> >> $ cat `which blastn` > >> >> >> #!/usr/bin/env bash > >> >> >> > >> >> >> /myinstallation/blastn -task blastn $@ > >> >> >> > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Without digging thru the code, I think the developer can call > the > >> >> >> parameters whatever he likes and if he wants to use "-method " > >> instead > >> >> of > >> >> >> "-task " there's probably a good reason (right MAJ?) > >> >> >> > > >> >> >> > If you write code as in the docs, does it give you the same > >> results > >> >> as > >> >> >> when you run bl2seq manually from the command line? > >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give > you > >> a > >> >> >> different result to " -method => 'megablast' " or " -method => > 'dc- > >> >> >> megablast' " > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > --Russell > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> >> >> To: Smithies, Russell > >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > >> option > >> >> >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> See the help page of blastn. By default blastn use the option > "- > >> task > >> >> >> >> megablast", which is less sensitive than the option "-task > >> blastn". > >> >> >> >> > >> >> >> >> $ blastn -help > >> >> >> >> .... > >> >> >> >> ?-task 'dc- > >> >> >> megablast' > >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> >> >> ? ? ?Task to execute > >> >> >> >> ? ? ?Default = `megablast' > >> >> >> >> ... > >> >> >> >> > >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> >> >> wrote: > >> >> >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> >> >> > I think the docs make it fairly clear that this is not one > of > >> the > >> >> >> >> available parameters. > >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) > is > >> >> the > >> >> >> one > >> >> >> >> to use. > >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> >> >> > > >> >> >> >> > # create a factory: > >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> > > >> >> >> >> > # do a bl2seq > >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> >> >> > > >> >> >> >> > Unless I've missed something and > >> >> Bio::Tools::Run::StandAloneBlastPlus > >> >> >> is > >> >> >> >> completely broken (which is possible as it's development code) > >> >> >> something > >> >> >> >> similar to the example should work. > >> >> >> >> > > >> >> >> >> > --Russell > >> >> >> >> > > >> >> >> >> > > >> >> >> >> >> -----Original Message----- > >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> >> >> To: Smithies, Russell > >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task > blastn > >> >> option > >> >> >> >> from > >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> > >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> >> >> wrote: > >> >> >> >> >> > Have you read the docs? > >> >> >> >> >> > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> >> >> > >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' > to > >> >> >> blastn. > >> >> >> >> I > >> >> >> >> >> tried > >> >> >> >> >> > >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> >> >> task='blastn'); > >> >> >> >> >> > >> >> >> >> >> But it doesn't work. > >> >> >> >> >> > >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be > Bio::Seq > >> >> >> objects? > >> >> >> >> >> > >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is > not > >> my > >> >> >> >> problem. > >> >> >> >> >> > >> >> >> >> >> > --Russell > >> >> >> >> >> > > >> >> >> >> >> >> -----Original Message----- > >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl- > >> l- > >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > >> >> option > >> >> >> from > >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> Hi, > >> >> >> >> >> >> > >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to > run > >> the > >> >> >> >> following > >> >> >> >> >> >> command. > >> >> >> >> >> >> > >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> I tried the following code, which works like without the > '- > >> >> task > >> >> >> >> >> >> blastn' option. Would you please let me know how to > supply > >> the > >> >> >> >> option > >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- > >new(); > >> >> >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> >> >> ? ); > >> >> >> >> >> >> ? $factory->cleanup; > >> >> >> >> >> >> > >> >> >> >> >> >> Thank you for you help! > >> >> >> >> >> >> > >> >> >> >> >> >> -- > >> >> >> >> >> >> Regards, > >> >> >> >> >> >> Peng > >> >> >> >> >> >> _______________________________________________ > >> >> >> >> >> >> Bioperl-l mailing list > >> >> >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > Attention: The information contained in this message > and/or > >> >> >> >> attachments > >> >> >> >> >> > from AgResearch Limited is intended only for the persons > or > >> >> >> entities > >> >> >> >> >> > to which it is addressed and may contain confidential > and/or > >> >> >> >> privileged > >> >> >> >> >> > material. Any review, retransmission, dissemination or > other > >> >> use > >> >> >> of, > >> >> >> >> or > >> >> >> >> >> > taking of any action in reliance upon, this information > by > >> >> persons > >> >> >> or > >> >> >> >> >> > entities other than the intended recipients is prohibited > by > >> >> >> >> AgResearch > >> >> >> >> >> > Limited. If you have received this message in error, > please > >> >> notify > >> >> >> >> the > >> >> >> >> >> > sender immediately. > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> -- > >> >> >> >> >> Regards, > >> >> >> >> >> Peng > >> >> >> >> > > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From armendarez77 at hotmail.com Wed Jun 9 08:38:24 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Wed, 9 Jun 2010 05:38:24 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? Thanks again, Veronica Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 From: David.Messina at sbc.su.se Date: Mon, 7 Jun 2010 22:38:48 +0200 CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org To: armendarez77 at hotmail.com On Jun 7, 2010, at 10:32 PM, wrote:Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From cjfields at illinois.edu Wed Jun 9 08:44:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 07:44:54 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: <7A526D4B-AED6-4957-B2F3-CA22D5578BAB@illinois.edu> I'm thinking of releasing it separately as a focused package (wrappers, parsers and all). That way it's not reliant on releases of BioPerl for updates. chris On Jun 9, 2010, at 7:38 AM, wrote: > Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. > > When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? > > Thanks again, > > Veronica > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: David.Messina at sbc.su.se > Date: Mon, 7 Jun 2010 22:38:48 +0200 > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > To: armendarez77 at hotmail.com > > > On Jun 7, 2010, at 10:32 PM, wrote: > > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? > > No, it should be git://github.com/bioperl/bioperl-dev.git > > On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. > > Dave > > > Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. Learn more. From pengyu.ut at gmail.com Wed Jun 9 10:51:31 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 9 Jun 2010 09:51:31 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: My original code use -method=>'blastn' as Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent to blast+'s command line option -task blastn. On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell wrote: > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 4:10 p.m. >> To: Smithies, Russell >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> I think it is better to document the mapping between blast options and >> bioperl options. I searched 'task', but I don't find anything. Thank >> you for letting me know. >> >> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >> wrote: >> > Bioperl's equivalent is blastn -task blastn -query first.fa -subject >> second.fa >> > We've just used 'method' instead of 'task'. >> > >> > You can always use the legacy_blast.pl script that comes with blast+ >> then you can just use your old bl2seq commands. >> > >> > --Russell >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 4:03 p.m. >> >> To: Smithies, Russell >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> I've solved my problem by using the wrapper. Note that this is a hack >> >> as it is not done in bioperl. >> >> $ cat `which blastn` >> >> #!/usr/bin/env bash >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> Anyway, I restate my original problem below. >> >> >> >> bioperl's bl2seq by default is equivalent to the following command. >> >> blastn -query first.fa -subject second.fa >> >> >> >> I want to add the option '-task blastn'. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> But I don't find such option in bioperl's bl2seq. >> >> >> >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >> >> wrote: >> >> > I've lost track of what your main problem is, please restate your >> >> original question? >> >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >> what >> >> part of the documentation is incorrect? >> >> > >> >> > >> >> > --Russell >> >> > >> >> > >> >> >> -----Original Message----- >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. >> >> >> To: Smithies, Russell >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> >> from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> I knew this I should use blastn as bl2seq command is not available >> in >> >> >> BLAST+. I'm not sure what you think I should read? >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >> >> >> wrote: >> >> >> > I really think you need to spend more time reading and less time >> >> >> emailing. >> >> >> > >> >> >> > >> >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >> >> >> > The BLAST+ package includes the ability to compare two or more >> >> sequences >> >> >> to each other in each of the search programs. Using the -subject >> >> ?option >> >> >> instead of the -db will cause any of the search programs to behave >> as a >> >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >> >> >> sequences utility (bl2seq) included in the traditional BLAST >> package. >> >> >> > >> >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >> a >> >> >> wrapper as there's no longer a bl2seq executable as there was with >> the >> >> >> older version of BLAST. >> >> >> > >> >> >> > >> >> >> > --Russell >> >> >> > >> >> >> >> -----Original Message----- >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. >> >> >> >> To: Smithies, Russell >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> option >> >> >> from >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result >> changes, >> >> >> >> which means bioperl call blastn rather than bl2seq in the command >> >> >> >> line. The results are consistent between bioperl and blastn >> command >> >> >> >> line. >> >> >> >> >> >> >> >> $ cat `which blastn` >> >> >> >> #!/usr/bin/env bash >> >> >> >> >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >> >> >> >> wrote: >> >> >> >> > Without digging thru the code, I think the developer can call >> the >> >> >> >> parameters whatever he likes and if he wants to use "-method " >> >> instead >> >> >> of >> >> >> >> "-task " there's probably a good reason (right MAJ?) >> >> >> >> > >> >> >> >> > If you write code as in the docs, does it give you the same >> >> results >> >> >> as >> >> >> >> when you run bl2seq manually from the command line? >> >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give >> you >> >> a >> >> >> >> different result to " -method => 'megablast' " or " -method => >> 'dc- >> >> >> >> megablast' " >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > --Russell >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> >> -----Original Message----- >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> >> option >> >> >> >> from >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> See the help page of blastn. By default blastn use the option >> "- >> >> task >> >> >> >> >> megablast", which is less sensitive than the option "-task >> >> blastn". >> >> >> >> >> >> >> >> >> >> $ blastn -help >> >> >> >> >> .... >> >> >> >> >> ?-task > 'dc- >> >> >> >> megablast' >> >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> >> >> >> >> ? ? ?Task to execute >> >> >> >> >> ? ? ?Default = `megablast' >> >> >> >> >> ... >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> >> >> >> >> wrote: >> >> >> >> >> > Why are you trying to supply option '-task blastn' ?? >> >> >> >> >> > I think the docs make it fairly clear that this is not one >> of >> >> the >> >> >> >> >> available parameters. >> >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) >> is >> >> >> the >> >> >> >> one >> >> >> >> >> to use. >> >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> >> >> >> >> > >> >> >> >> >> > # create a factory: >> >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> >> >> > >> >> >> >> >> > # do a bl2seq >> >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', >> >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> >> >> >> >> > >> >> >> >> >> > Unless I've missed something and >> >> >> Bio::Tools::Run::StandAloneBlastPlus >> >> >> >> is >> >> >> >> >> completely broken (which is possible as it's development code) >> >> >> >> something >> >> >> >> >> similar to the example should work. >> >> >> >> >> > >> >> >> >> >> > --Russell >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task >> blastn >> >> >> option >> >> >> >> >> from >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> >> >> >> >> wrote: >> >> >> >> >> >> > Have you read the docs? >> >> >> >> >> >> > >> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> >> >> >> >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' >> to >> >> >> >> blastn. >> >> >> >> >> I >> >> >> >> >> >> tried >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> >> >> >> >> task='blastn'); >> >> >> >> >> >> >> >> >> >> >> >> But it doesn't work. >> >> >> >> >> >> >> >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be >> Bio::Seq >> >> >> >> objects? >> >> >> >> >> >> >> >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is >> not >> >> my >> >> >> >> >> problem. >> >> >> >> >> >> >> >> >> >> >> >> > --Russell >> >> >> >> >> >> > >> >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org >> [mailto:bioperl- >> >> l- >> >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn >> >> >> option >> >> >> >> from >> >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> Hi, >> >> >> >> >> >> >> >> >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to >> run >> >> the >> >> >> >> >> following >> >> >> >> >> >> >> command. >> >> >> >> >> >> >> >> >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the >> '- >> >> >> task >> >> >> >> >> >> >> blastn' option. Would you please let me know how to >> supply >> >> the >> >> >> >> >> option >> >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >> >new(); >> >> >> >> >> >> >> ? my $result=$factory->bl2seq( >> >> >> >> >> >> >> ? ? -method=>'blastn', >> >> >> >> >> >> >> ? ? -query=> $seq1, >> >> >> >> >> >> >> ? ? -subject=> $seq2 >> >> >> >> >> >> >> ? ); >> >> >> >> >> >> >> ? $factory->cleanup; >> >> >> >> >> >> >> >> >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> >> Regards, >> >> >> >> >> >> >> Peng >> >> >> >> >> >> >> _______________________________________________ >> >> >> >> >> >> >> Bioperl-l mailing list >> >> >> >> >> >> >> Bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > Attention: The information contained in this message >> and/or >> >> >> >> >> attachments >> >> >> >> >> >> > from AgResearch Limited is intended only for the persons >> or >> >> >> >> entities >> >> >> >> >> >> > to which it is addressed and may contain confidential >> and/or >> >> >> >> >> privileged >> >> >> >> >> >> > material. Any review, retransmission, dissemination or >> other >> >> >> use >> >> >> >> of, >> >> >> >> >> or >> >> >> >> >> >> > taking of any action in reliance upon, this information >> by >> >> >> persons >> >> >> >> or >> >> >> >> >> >> > entities other than the intended recipients is prohibited >> by >> >> >> >> >> AgResearch >> >> >> >> >> >> > Limited. If you have received this message in error, >> please >> >> >> notify >> >> >> >> >> the >> >> >> >> >> >> > sender immediately. >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> Regards, >> >> >> >> >> >> Peng >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> Regards, >> >> >> >> >> Peng >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> Regards, >> >> >> >> Peng >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Regards, Peng From cjfields at illinois.edu Wed Jun 9 10:57:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 09:57:17 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: <1BE50888-A4BE-4DCB-AC53-6C6BC5529EF0@illinois.edu> Peng, If you think this is a bug, can you submit it to bugzilla? It's very possible it's implemented but I'm not completely familiar with the code yet (though I will be very soon!). Mark could also probably answer most of these questions but I think he's been pretty busy as of late, but I can probably take a look. chris On Jun 9, 2010, at 9:51 AM, Peng Yu wrote: > My original code use -method=>'blastn' as > Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent > to blast+'s command line option -task blastn. > > > On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell > wrote: >> >> >>> -----Original Message----- >>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>> Sent: Wednesday, 9 June 2010 4:10 p.m. >>> To: Smithies, Russell >>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >>> Bio::Tools::Run::StandAloneBlastPlus? >>> >>> I think it is better to document the mapping between blast options and >>> bioperl options. I searched 'task', but I don't find anything. Thank >>> you for letting me know. >>> >>> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >>> wrote: >>>> Bioperl's equivalent is blastn -task blastn -query first.fa -subject >>> second.fa >>>> We've just used 'method' instead of 'task'. >>>> >>>> You can always use the legacy_blast.pl script that comes with blast+ >>> then you can just use your old bl2seq commands. >>>> >>>> --Russell >>>> >>>>> -----Original Message----- >>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>> Sent: Wednesday, 9 June 2010 4:03 p.m. >>>>> To: Smithies, Russell >>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>> from >>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>> >>>>> I've solved my problem by using the wrapper. Note that this is a hack >>>>> as it is not done in bioperl. >>>>> $ cat `which blastn` >>>>> #!/usr/bin/env bash >>>>> >>>>> /myinstallation/blastn -task blastn $@ >>>>> >>>>> >>>>> Anyway, I restate my original problem below. >>>>> >>>>> bioperl's bl2seq by default is equivalent to the following command. >>>>> blastn -query first.fa -subject second.fa >>>>> >>>>> I want to add the option '-task blastn'. >>>>> blastn -task blastn -query first.fa -subject second.fa >>>>> >>>>> But I don't find such option in bioperl's bl2seq. >>>>> >>>>> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >>>>> wrote: >>>>>> I've lost track of what your main problem is, please restate your >>>>> original question? >>>>>> I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >>> what >>>>> part of the documentation is incorrect? >>>>>> >>>>>> >>>>>> --Russell >>>>>> >>>>>> >>>>>>> -----Original Message----- >>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>> Sent: Wednesday, 9 June 2010 3:53 p.m. >>>>>>> To: Smithies, Russell >>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>>>> from >>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>> >>>>>>> I knew this I should use blastn as bl2seq command is not available >>> in >>>>>>> BLAST+. I'm not sure what you think I should read? >>>>>>> >>>>>>> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >>>>>>> wrote: >>>>>>>> I really think you need to spend more time reading and less time >>>>>>> emailing. >>>>>>>> >>>>>>>> >>>>> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >>>>>>>> The BLAST+ package includes the ability to compare two or more >>>>> sequences >>>>>>> to each other in each of the search programs. Using the -subject >>>>> option >>>>>>> instead of the -db will cause any of the search programs to behave >>> as a >>>>>>> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >>>>>>> sequences utility (bl2seq) included in the traditional BLAST >>> package. >>>>>>>> >>>>>>>> While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >>> a >>>>>>> wrapper as there's no longer a bl2seq executable as there was with >>> the >>>>>>> older version of BLAST. >>>>>>>> >>>>>>>> >>>>>>>> --Russell >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>> Sent: Wednesday, 9 June 2010 3:37 p.m. >>>>>>>>> To: Smithies, Russell >>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>> option >>>>>>> from >>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>> >>>>>>>>> I made a wrapper. Then I call bl2seq in bioperl. The result >>> changes, >>>>>>>>> which means bioperl call blastn rather than bl2seq in the command >>>>>>>>> line. The results are consistent between bioperl and blastn >>> command >>>>>>>>> line. >>>>>>>>> >>>>>>>>> $ cat `which blastn` >>>>>>>>> #!/usr/bin/env bash >>>>>>>>> >>>>>>>>> /myinstallation/blastn -task blastn $@ >>>>>>>>> >>>>>>>>> >>>>>>>>> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >>>>>>>>> wrote: >>>>>>>>>> Without digging thru the code, I think the developer can call >>> the >>>>>>>>> parameters whatever he likes and if he wants to use "-method " >>>>> instead >>>>>>> of >>>>>>>>> "-task " there's probably a good reason (right MAJ?) >>>>>>>>>> >>>>>>>>>> If you write code as in the docs, does it give you the same >>>>> results >>>>>>> as >>>>>>>>> when you run bl2seq manually from the command line? >>>>>>>>>> When you run it via BioPerl, does " -method => 'blastn' " give >>> you >>>>> a >>>>>>>>> different result to " -method => 'megablast' " or " -method => >>> 'dc- >>>>>>>>> megablast' " >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> --Russell >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> -----Original Message----- >>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>> Sent: Wednesday, 9 June 2010 3:12 p.m. >>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>>>> option >>>>>>>>> from >>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>> >>>>>>>>>>> See the help page of blastn. By default blastn use the option >>> "- >>>>> task >>>>>>>>>>> megablast", which is less sensitive than the option "-task >>>>> blastn". >>>>>>>>>>> >>>>>>>>>>> $ blastn -help >>>>>>>>>>> .... >>>>>>>>>>> -task >> 'dc- >>>>>>>>> megablast' >>>>>>>>>>> 'megablast' 'vecscreen' > >>>>>>>>>>> Task to execute >>>>>>>>>>> Default = `megablast' >>>>>>>>>>> ... >>>>>>>>>>> >>>>>>>>>>> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >>>>>>>>>>> wrote: >>>>>>>>>>>> Why are you trying to supply option '-task blastn' ?? >>>>>>>>>>>> I think the docs make it fairly clear that this is not one >>> of >>>>> the >>>>>>>>>>> available parameters. >>>>>>>>>>>> The option " -method => 'blastn' " (as detailed in the docs) >>> is >>>>>>> the >>>>>>>>> one >>>>>>>>>>> to use. >>>>>>>>>>>> http://doc.bioperl.org/releases/bioperl-current/bioperl- >>>>>>>>>>> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >>>>>>>>>>>> >>>>>>>>>>>> # create a factory: >>>>>>>>>>>> $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >>>>>>>>>>>> >>>>>>>>>>>> # do a bl2seq >>>>>>>>>>>> $fac->bl2seq( -method => 'blastn', >>>>>>>>>>>> -query => $seq_object_1, >>>>>>>>>>>> -subject => $seq_object_2 ); >>>>>>>>>>>> >>>>>>>>>>>> Unless I've missed something and >>>>>>> Bio::Tools::Run::StandAloneBlastPlus >>>>>>>>> is >>>>>>>>>>> completely broken (which is possible as it's development code) >>>>>>>>> something >>>>>>>>>>> similar to the example should work. >>>>>>>>>>>> >>>>>>>>>>>> --Russell >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 2:21 p.m. >>>>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task >>> blastn >>>>>>> option >>>>>>>>>>> from >>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>> >>>>>>>>>>>>> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >>>>>>>>>>>>> wrote: >>>>>>>>>>>>>> Have you read the docs? >>>>>>>>>>>>>> >>> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >>>>>>>>>>>>> >>>>>>>>>>>>> Yes. But they don't say how to supply option '-task blastn' >>> to >>>>>>>>> blastn. >>>>>>>>>>> I >>>>>>>>>>>>> tried >>>>>>>>>>>>> >>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >>>>>>>>>>> task='blastn'); >>>>>>>>>>>>> >>>>>>>>>>>>> But it doesn't work. >>>>>>>>>>>>> >>>>>>>>>>>>>> Do query and subject ($seq1 and $seq2) need to be >>> Bio::Seq >>>>>>>>> objects? >>>>>>>>>>>>> >>>>>>>>>>>>> I think so. I just get $seq1 and $seq2 from SeqIO. This is >>> not >>>>> my >>>>>>>>>>> problem. >>>>>>>>>>>>> >>>>>>>>>>>>>> --Russell >>>>>>>>>>>>>> >>>>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>>>> From: bioperl-l-bounces at lists.open-bio.org >>> [mailto:bioperl- >>>>> l- >>>>>>>>>>>>>>> bounces at lists.open-bio.org] On Behalf Of Peng Yu >>>>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 1:00 p.m. >>>>>>>>>>>>>>> To: bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> Subject: [Bioperl-l] How to run blastn with -task blastn >>>>>>> option >>>>>>>>> from >>>>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I need to use Bio::Tools::Run::StandAloneBlastPlus to >>> run >>>>> the >>>>>>>>>>> following >>>>>>>>>>>>>>> command. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> blastn -task blastn -query first.fa -subject second.fa >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I tried the following code, which works like without the >>> '- >>>>>>> task >>>>>>>>>>>>>>> blastn' option. Would you please let me know how to >>> supply >>>>> the >>>>>>>>>>> option >>>>>>>>>>>>>>> in Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >>>> new(); >>>>>>>>>>>>>>> my $result=$factory->bl2seq( >>>>>>>>>>>>>>> -method=>'blastn', >>>>>>>>>>>>>>> -query=> $seq1, >>>>>>>>>>>>>>> -subject=> $seq2 >>>>>>>>>>>>>>> ); >>>>>>>>>>>>>>> $factory->cleanup; >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Thank you for you help! >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> -- >>>>>>>>>>>>>>> Regards, >>>>>>>>>>>>>>> Peng >>>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>>> Bioperl-l mailing list >>>>>>>>>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> Attention: The information contained in this message >>> and/or >>>>>>>>>>> attachments >>>>>>>>>>>>>> from AgResearch Limited is intended only for the persons >>> or >>>>>>>>> entities >>>>>>>>>>>>>> to which it is addressed and may contain confidential >>> and/or >>>>>>>>>>> privileged >>>>>>>>>>>>>> material. Any review, retransmission, dissemination or >>> other >>>>>>> use >>>>>>>>> of, >>>>>>>>>>> or >>>>>>>>>>>>>> taking of any action in reliance upon, this information >>> by >>>>>>> persons >>>>>>>>> or >>>>>>>>>>>>>> entities other than the intended recipients is prohibited >>> by >>>>>>>>>>> AgResearch >>>>>>>>>>>>>> Limited. If you have received this message in error, >>> please >>>>>>> notify >>>>>>>>>>> the >>>>>>>>>>>>>> sender immediately. >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> -- >>>>>>>>>>>>> Regards, >>>>>>>>>>>>> Peng >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Regards, >>>>>>>>>>> Peng >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Regards, >>>>>>>>> Peng >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Regards, >>>>>>> Peng >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Regards, >>>>> Peng >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From amackey at virginia.edu Wed Jun 9 10:50:48 2010 From: amackey at virginia.edu (Aaron Mackey) Date: Wed, 9 Jun 2010 10:50:48 -0400 Subject: [Bioperl-l] patch: fix parsing of FASTA results Message-ID: Hopefully someone a bit more git-savvy than me can drop this little ditty in to Bio/SearchIO/fasta.pm? [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 @@ -623,7 +623,7 @@ $_ = $self->_readline(); my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* (?: bits: \s* (\S+) \s+ )? - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; + (?: E|expect ) \s* \((?:\d+)?\) :? \s*(\S+)/ox; $bits = $score unless defined $bits; my $v = shift @hit_signifs; From golharam at gmail.com Wed Jun 9 11:59:01 2010 From: golharam at gmail.com (Ryan) Date: Wed, 9 Jun 2010 08:59:01 -0700 (PDT) Subject: [Bioperl-l] How to determine match type from Bio::Coordinate::GeneMapper Message-ID: <8838cc42-fc66-4b46-bf46-43053333e664@x27g2000yqb.googlegroups.com> Hi - I'm using Bio::Coordinate::GeneMapper to map from CDS to Gene Coordinates. I'm using the example given in the code: # Collection representing exons # cds 1 5 6 10 11 15 # exon 1 5 1 5 1 5 # gene 1 5 11 15 21 25 # |---| |---| |---| #-----|-----------------------|---|-- # chr 1 5 9 15 19 25 29 # pair1 pair2 pair3 If I map cds(1-5) -> gene(1-5), the first 5 bases of the cds map to the first 5 bases of the gene, as expected. my $cds_pos = Bio::Location::Simple->new(-start => 1, -end => 5, - strand => 1); my $gen_pos = $m->map($cds_pos); is ($gen_pos->start, 1); is ($gen_pos->end, 5); If I map cds(6-11) -> gene(11-21), I get 2 sublocations $cds_pos = Bio::Location::Simple->new(-start => 6, -end => 11, -strand => 1); my $gen_pos_split = $m->map($cds_pos); is ($gen_pos_split->start, 11); is ($gen_pos_split->end, 21); My question is, how do I determine, after mapping, that my result is in ONE consecutive location, or in multiple locations? I can't figure this out from the documentation on Bio::Coordinate::GeneMapper or Bio::Coordinate::Result. From jessica.sun at gmail.com Wed Jun 9 12:28:58 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:28:58 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 12:46:51 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 18:46:51 +0200 Subject: [Bioperl-l] patch: fix parsing of FASTA results In-Reply-To: References: Message-ID: Committed. Tests pass. Thanks, Aaron! Dave On Jun 9, 2010, at 4:50 PM, Aaron Mackey wrote: > Hopefully someone a bit more git-savvy than me can drop this little ditty in > to Bio/SearchIO/fasta.pm? > > [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm > --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 > +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 > @@ -623,7 +623,7 @@ > $_ = $self->_readline(); > my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* > (?: bits: \s* (\S+) \s+ )? > - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; > + (?: E|expect ) \s* \((?:\d+)?\) :? > \s*(\S+)/ox; > $bits = $score unless defined $bits; > > my $v = shift @hit_signifs; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Wed Jun 9 12:30:35 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:30:35 -0400 Subject: [Bioperl-l] Fwd: Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: ---------- Forwarded message ---------- From: Jessica Sun Date: Wed, Jun 9, 2010 at 12:28 PM Subject: Re: [Bioperl-l] Get variation included in genbank file To: Dave Messina Cc: bioperl-l at lists.open-bio.org I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 13:20:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:20:12 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: Hi again Jessica, Forgive my slowness here, but is this what you want to do? 1) Start with an NM_ mRNA record in your example, NM_001110556.1 2) Obtain the corresponding NG_ genomics locus record in Genbank format which would correspond to the example file you attached. Accession number NG_011506 Is that right? There are probably more clever ways to do this, but here's how I would approach it: 1) extract the GeneID dbxref from the NM_ mRNA record using Bio::SeqIO. See http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Features for details. 2) Use that to query the Gene database and get the related NG_ record I don't know exactly what the field name is for the NG_ record, but you can list them all using this example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#What_information_is_available_for_database_.27x.27.3F and figure it out via trial and error. 3) Once you have the NG_ id, you can retrieve the genbank record Here's the relevant example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#Retrieve_raw_data_records_from_GenBank.2C_save_raw_data_to_file.2C_then_parse_via_Bio::SeqIO So, by now it should be obvious that I'm presenting a general strategy. You'll have to do some legwork to get exactly what you want. Good luck, and if you come up with a nice solution, please add it to the wiki! Dave > I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. > > thx > > > On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > > > > -- > Jessica Jingping Sun > From David.Messina at sbc.su.se Wed Jun 9 13:51:25 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:51:25 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Hi Jessica, Please keep the BioPerl list on the Cc line so everyone can follow along. > Follow your approach it did not seem to me you can have Variation tag included which > list the know dbSNP location, id and allele changes? Ah okay, I assumed the file you attached was obtained directly from Genbank and that the variation info therein was already included. (It appears that's not the case ? the variation information is not present in the version of NG_011506 I found at Genbank.) If you want to include your own custom information in a genbank file, you'll have to pull it out of dbSNP (or wherever the variation info is). There are a couple of scripts that might be able to help with that (search for snp): http://www.bioperl.org/wiki/Bioperl_scripts You can then insert them into a RichSeq object as features and output in genbank format. For that part, see the HOWTO: http://www.bioperl.org/wiki/HOWTO:Feature-Annotation Dave From jessica.sun at gmail.com Wed Jun 9 14:37:46 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 14:37:46 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: Thanks Dave. the variation information is not present in the version of NG_011506 I found at Genbank.) -- Yes, then if you click on the right side customer view there is a check box Features added by NCBI :209 snps, if you check that it will add all the variations in the gbk fomat. I found this would be a neat feature if it can automatically load by bioperl with an option turn on. On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > Hi Jessica, > > Please keep the BioPerl list on the Cc line so everyone can follow along. > > > > Follow your approach it did not seem to me you can have Variation tag > included which > > list the know dbSNP location, id and allele changes? > > Ah okay, I assumed the file you attached was obtained directly from Genbank > and that the variation info therein was already included. (It appears that's > not the case ? the variation information is not present in the version of > NG_011506 I found at Genbank.) > > If you want to include your own custom information in a genbank file, > you'll have to pull it out of dbSNP (or wherever the variation info is). > There are a couple of scripts that might be able to help with that (search > for snp): > > http://www.bioperl.org/wiki/Bioperl_scripts > > > You can then insert them into a RichSeq object as features and output in > genbank format. For that part, see the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > > > Dave > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Wed Jun 9 15:08:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 21:08:50 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <088E96F2-E26D-4142-AEB8-A8EFD26DEE68@sbc.su.se> > I found this would be a neat feature if it can automatically load by bioperl with an option turn on. Enhancements of that sort are normally contributed by BioPerl users who have a desire for them. (hint hint :) While I can't promise anything, of course, feel free to submit an enhancement request to our bug tracker: http://bugzilla.open-bio.org/ Dave From cjfields at illinois.edu Wed Jun 9 20:06:42 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 19:06:42 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. #!/usr/bin/perl -w use Modern::Perl; use Bio::DB::EUtilities; my $id = '224809339'; my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', -id => $id, -email => 'setyourown at foo.bar', -verbose => 1, -dbfrom => 'nuccore', -db => 'snp', -cmd => 'neighbor_history', ); my $hist = $eutil->next_History || die "No history data returned"; $eutil->set_parameters(-eutil => 'efetch', -history => $hist, -retmode => 'text', # 'chr', 'flt', 'brief', 'rsr', 'docset' -rettype => 'chr' ); $eutil->get_Response(-file => 'snps.txt'); # or ... $eutil->set_parameters(-eutil => 'esummary', -history => $hist, ); $eutil->print_all; # chris On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > Thanks Dave. > the variation information is not present in the version of NG_011506 I found > at Genbank.) -- Yes, then if you click on the right side customer view there > is a check box Features added by NCBI :209 snps, if you check that it will > add all the variations in the gbk fomat. I found this would be a neat > feature if it can automatically load by bioperl with an option turn on. > > > > On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > >> Hi Jessica, >> >> Please keep the BioPerl list on the Cc line so everyone can follow along. >> >> >>> Follow your approach it did not seem to me you can have Variation tag >> included which >>> list the know dbSNP location, id and allele changes? >> >> Ah okay, I assumed the file you attached was obtained directly from Genbank >> and that the variation info therein was already included. (It appears that's >> not the case ? the variation information is not present in the version of >> NG_011506 I found at Genbank.) >> >> If you want to include your own custom information in a genbank file, >> you'll have to pull it out of dbSNP (or wherever the variation info is). >> There are a couple of scripts that might be able to help with that (search >> for snp): >> >> http://www.bioperl.org/wiki/Bioperl_scripts >> >> >> You can then insert them into a RichSeq object as features and output in >> genbank format. For that part, see the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >> >> >> Dave >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From bimber at wisc.edu Thu Jun 10 09:43:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 08:43:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix Message-ID: hello, a little while ago i posted a bug about commandexts when you pass an array ref. when you pass an arrayref of files, instead of a string with 1 file, you get an error saying 'cannot use string '......' as an array ref while strict refs in place'. i believe i understand the bug, but am not entirely sure the best way to fix it. here's the original code from commandexts.pm, starting line 989: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@files, $_, 1, @{$files[$_]}); splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); } } It throws the error on the second splice(). The reason is b/c $files[$_] isnt an array ref anymore, b/c we just expanded it in the line before. Truthfully, I dont entirely understand why we're expanding out @switches for each file. Maybe i'm missing something obvious, but why would we want these copied? however, there's couple ways around it: 1. save the value of @{$files[$_]} by adding: my @tmp = @{$files[$_]};, then using @tmp on that line 2. put the second splice() before the first 3. if the idea is actually to expand @switches against every file, then move this outside the for loop I originally posted that this could be fixed by surrounding the problem line with 'no strict'/ 'use strict'; however, that really only worked b/c the command I was using did not actually have any switches. I doubt it would work properly if your command had them. -Ben From cjfields at illinois.edu Thu Jun 10 10:58:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 09:58:56 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: Message-ID: On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > hello, > > a little while ago i posted a bug about commandexts when you pass an > array ref. when you pass an arrayref of files, instead of a string > with 1 file, you get an error saying 'cannot use string '......' as an > array ref while strict refs in place'. i believe i understand the > bug, but am not entirely sure the best way to fix it. here's the > original code from commandexts.pm, starting line 989: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@files, $_, 1, @{$files[$_]}); > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > } > } > > It throws the error on the second splice(). The reason is b/c > $files[$_] isnt an array ref anymore, b/c we just expanded it in the > line before. Truthfully, I dont entirely understand why we're > expanding out @switches for each file. Maybe i'm missing something > obvious, but why would we want these copied? Maybe @file and @switches are in-sync and thus need similar expansion? Not sure, personally. > however, there's couple ways around it: > > 1. save the value of @{$files[$_]} by adding: my @tmp = > @{$files[$_]};, then using @tmp on that line > 2. put the second splice() before the first > 3. if the idea is actually to expand @switches against every file, > then move this outside the for loop The first one seems safest. The real question is, do any of these solutions work? Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > I originally posted that this could be fixed by surrounding the > problem line with 'no strict'/ 'use strict'; however, that really only > worked b/c the command I was using did not actually have any switches. > I doubt it would work properly if your command had them. > > -Ben I think, if one of the proposed solutions works, pick which you think is the best and go with it. Test it out, then we can commit this to github. BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. chris From armendarez77 at hotmail.com Thu Jun 10 10:54:18 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 07:54:18 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID Message-ID: Hello, Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a 'Bad Gateway' error. While my system admin is looking into this, I've decided to go another route. Therefore, I've downloaded the NCBI nr database. The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. Thank you, Veronica _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From gopal.cshl at gmail.com Thu Jun 10 12:24:31 2010 From: gopal.cshl at gmail.com (Gopal) Date: Thu, 10 Jun 2010 12:24:31 -0400 Subject: [Bioperl-l] recursion limit reached for a gbk file Message-ID: Hi, I get a error message "Complex regular subexpression recursion limit (32766) exceeded " when I try to parse CDS from a microbial genbank file. Apparently recursion limit is universal and that means, others have somehow overcome this problem. The subroutine that triggers this error is pasted below: (based on "Beginning perl for Bioinformatics" as I am trying to adapt an example in that book for my work) $fh = open_file($library); $offset = tell($fh); while( $record = get_next_record($fh) ) { my $locus=( ); ($annotation, $dna) = get_annotation_and_dna($record); $offset = tell($fh); # Extract the fields of the annotation %fields = parse_annotation($annotation); Sub-routine that triggers the error message: sub parse_annotation { my($annotation) = @_; my(%results) = ( ); while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { my $value = $&; (my $key = $value) =~ s/^([A-Z]+).*/$1/s; $results{$key} = $value; } return %results; } thanks, -gopal From bimber at wisc.edu Thu Jun 10 12:46:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 11:46:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: i suspect this piece of code is seldom encountered. if any existing bioperl wrapper actually tried to pass an arrayref to commandexts, it would hit this same error. i only encountered this using samtools merge. I looked a little more into exactly what @switch is doing. it seems to allow you to supply switches specific to a given file. the bowtie wrapper uses it with paired end data (the first fasta gets a -1 and and second gets a -2). however, i dont see anywhere where this actually applies in a multi-file situation. nonetheless, reversing the order of the two existing splice() (lines 991-992) I think will preserve whatever functionality was there and prevent the error: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); splice(@files, $_, 1, @{$files[$_]}); } } As I write this email and look at the code above a little more, I think that the current approach used to expand these arrayrefs will also break down in other situations, including when the arrayref is not in the last element of the @files array or when 2 arrayrefs are passed. However, it seems that this is barely used and it really depends how much time/thought you want to put into it. -Ben On Thu, Jun 10, 2010 at 9:58 AM, Chris Fields wrote: > On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > >> hello, >> >> a little while ago i posted a bug about commandexts when you pass an >> array ref. ?when you pass an arrayref of files, instead of a string >> with 1 file, you get an error saying 'cannot use string '......' as an >> array ref while strict refs in place'. ?i believe i understand the >> bug, but am not entirely sure the best way to fix it. ?here's the >> original code from commandexts.pm, starting line 989: >> >> ? ?my @files = @args{@specs}; >> ? ?# expand arrayrefs >> ? ?my $l = $#files; >> ? ?for (0..$l) { >> ? ? ? if (ref($files[$_]) eq 'ARRAY') { >> ? ? ? ? ? splice(@files, $_, 1, @{$files[$_]}); >> ? ? ? ? ? splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); >> ? ? ? } >> ? ?} >> >> It throws the error on the second splice(). ?The reason is b/c >> $files[$_] isnt an array ref anymore, b/c we just expanded it in the >> line before. ?Truthfully, I dont entirely understand why we're >> expanding out @switches for each file. ?Maybe i'm missing something >> obvious, but why would we want these copied? > > Maybe @file and @switches are in-sync and thus need similar expansion? ?Not sure, personally. > >> however, there's couple ways around it: >> >> 1. save the value of ?@{$files[$_]} by adding: my @tmp = >> @{$files[$_]};, then using @tmp on that line >> 2. put the second splice() before the first >> 3. if the idea is actually to expand @switches against every file, >> then move this outside the for loop > > The first one seems safest. ?The real question is, do any of these solutions work? ?Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > >> I originally posted that this could be fixed by surrounding the >> problem line with 'no strict'/ 'use strict'; however, that really only >> worked b/c the command I was using did not actually have any switches. >> I doubt it would work properly if your command had them. >> >> -Ben > > I think, if one of the proposed solutions works, pick which you think is the best and go with it. ?Test it out, then we can commit this to github. > > BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From cjfields at illinois.edu Thu Jun 10 13:04:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 12:04:08 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: <6814E5AE-D074-4199-8269-6CDB928EB9DD@illinois.edu> On Jun 10, 2010, at 11:46 AM, Ben Bimber wrote: > i suspect this piece of code is seldom encountered. if any existing > bioperl wrapper actually tried to pass an arrayref to commandexts, it > would hit this same error. i only encountered this using samtools > merge. > > I looked a little more into exactly what @switch is doing. it seems > to allow you to supply switches specific to a given file. the bowtie > wrapper uses it with paired end data (the first fasta gets a -1 and > and second gets a -2). however, i dont see anywhere where this > actually applies in a multi-file situation. nonetheless, reversing > the order of the two existing splice() (lines 991-992) I think will > preserve whatever functionality was there and prevent the error: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > splice(@files, $_, 1, @{$files[$_]}); > } > } > > As I write this email and look at the code above a little more, I > think that the current approach used to expand these arrayrefs will > also break down in other situations, including when the arrayref is > not in the last element of the @files array or when 2 arrayrefs are > passed. However, it seems that this is barely used and it really > depends how much time/thought you want to put into it. > > -Ben It's worth documenting this concern in the code as a comment, particularly if the situation does pop up at some point. Do you want to send a patch in? Or just want us to make the switch in the code directly? chris From chmille4 at gmail.com Thu Jun 10 14:53:15 2010 From: chmille4 at gmail.com (Chase Miller) Date: Thu, 10 Jun 2010 14:53:15 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. Message-ID: Hi all, First off, I hope it's ok to post job openings here. However, I couldn't think of a better place to find some high quality people . As for the postion, The Center for Infection and Immunity at Columbia University has an opening for programmer analyst. If you are interested, check out the link below for more information https://jobs.columbia.edu/applicants/jsp/shared/frameset/Frameset.jsp?time=1276195489164 Thanks, Chase Miller Programmer Analyst The Center for Infection and Immunity Columbia University From David.Messina at sbc.su.se Thu Jun 10 15:39:14 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:39:14 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: Message-ID: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Hi Gopal, This is not a BioPerl question, so this list is really not the place for it. However, here's the first Google hit on your error message, which provides a solution: http://www.perlmonks.org/?node_id=810857 The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? Dave On Jun 10, 2010, at 6:24 PM, Gopal wrote: > Hi, > > I get a error message "Complex regular subexpression recursion limit > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > Apparently recursion limit is universal and that means, > others have somehow overcome this problem. > > The subroutine that triggers this error is pasted below: > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > example in that book for my work) > > > $fh = open_file($library); > > $offset = tell($fh); > > while( $record = get_next_record($fh) ) { > > my $locus=( ); > > ($annotation, $dna) = get_annotation_and_dna($record); > > $offset = tell($fh); > > > > # Extract the fields of the annotation > %fields = parse_annotation($annotation); > > > Sub-routine that triggers the error message: > > > sub parse_annotation { > > my($annotation) = @_; > my(%results) = ( ); > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > my $value = $&; > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > $results{$key} = $value; > } > > return %results; > } > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 15:56:21 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:56:21 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Message-ID: On Jun 10, 2010, at 9:54 PM, Gopal wrote: > Hi Dave, > > thanks for the tip. I saw that and others too. > > In "Beginning Perl for Bioinformatics", such a sub routine that I posted earlier was used for parsing out features etc. of genbank file (chapter 10). > That does not work well, at least with me, when large genbank files with multiple records are used. > > Meanwhile, by avoiding the problem of regex for long strings in a while loop and by parsing information by differently by reducing the > length of the string, I have fixed the problem. The trick was to avoid the hash as that required all of the long string to be stored in $value. > > thanks anyway, > > best > > -gopal > > On Thu, Jun 10, 2010 at 3:39 PM, Dave Messina wrote: > Hi Gopal, > > This is not a BioPerl question, so this list is really not the place for it. > > However, here's the first Google hit on your error message, which provides a solution: > > http://www.perlmonks.org/?node_id=810857 > > The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. > > Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? > > > Dave > > > > On Jun 10, 2010, at 6:24 PM, Gopal wrote: > > > Hi, > > > > I get a error message "Complex regular subexpression recursion limit > > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > > Apparently recursion limit is universal and that means, > > others have somehow overcome this problem. > > > > The subroutine that triggers this error is pasted below: > > > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > > example in that book for my work) > > > > > > $fh = open_file($library); > > > > $offset = tell($fh); > > > > while( $record = get_next_record($fh) ) { > > > > my $locus=( ); > > > > ($annotation, $dna) = get_annotation_and_dna($record); > > > > $offset = tell($fh); > > > > > > > > # Extract the fields of the annotation > > %fields = parse_annotation($annotation); > > > > > > Sub-routine that triggers the error message: > > > > > > sub parse_annotation { > > > > my($annotation) = @_; > > my(%results) = ( ); > > > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > > my $value = $&; > > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > > $results{$key} = $value; > > } > > > > return %results; > > } > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > From David.Messina at sbc.su.se Thu Jun 10 16:00:49 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:00:49 +0200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: Message-ID: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Hi Veronica, These days when you run BLAST at the NCBI server, you're running BLAST+, which is their complete rewrite of (and replacement for) BLAST. You can also download BLAST+ and do pretty much everything on your local machine that you can do on their server, including limit by taxonomy. I think this is the right parameter: http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query Incidentally, BLAST+ has this awesome feature whereby you can, from the command line, run searches remotely on their server against their databases from the command line, just by adding the --remote flag. (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by the way.) Dave On Jun 10, 2010, at 4:54 PM, wrote: > > Hello, > > Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? > > I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a > 'Bad Gateway' error. While my system admin is looking into this, I've > decided to go another route. Therefore, I've downloaded the NCBI nr database. > > The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. > > When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. > > > Thank you, > > Veronica > > > > > _________________________________________________________________ > Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 16:11:27 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:11:27 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Nice, Chris! I've added it to the EUtils cookbook. Dave On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). > > After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. > > #!/usr/bin/perl -w > > use Modern::Perl; > use Bio::DB::EUtilities; > > my $id = '224809339'; > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > -id => $id, > -email => 'setyourown at foo.bar', > -verbose => 1, > -dbfrom => 'nuccore', > -db => 'snp', > -cmd => 'neighbor_history', > ); > > my $hist = $eutil->next_History || die "No history data returned"; > > $eutil->set_parameters(-eutil => 'efetch', > -history => $hist, > -retmode => 'text', > # 'chr', 'flt', 'brief', 'rsr', 'docset' > -rettype => 'chr' > ); > > $eutil->get_Response(-file => 'snps.txt'); > > # or ... > > $eutil->set_parameters(-eutil => 'esummary', > -history => $hist, > ); > > $eutil->print_all; > > # chris > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >> Thanks Dave. >> the variation information is not present in the version of NG_011506 I found >> at Genbank.) -- Yes, then if you click on the right side customer view there >> is a check box Features added by NCBI :209 snps, if you check that it will >> add all the variations in the gbk fomat. I found this would be a neat >> feature if it can automatically load by bioperl with an option turn on. >> >> >> >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: >> >>> Hi Jessica, >>> >>> Please keep the BioPerl list on the Cc line so everyone can follow along. >>> >>> >>>> Follow your approach it did not seem to me you can have Variation tag >>> included which >>>> list the know dbSNP location, id and allele changes? >>> >>> Ah okay, I assumed the file you attached was obtained directly from Genbank >>> and that the variation info therein was already included. (It appears that's >>> not the case ? the variation information is not present in the version of >>> NG_011506 I found at Genbank.) >>> >>> If you want to include your own custom information in a genbank file, >>> you'll have to pull it out of dbSNP (or wherever the variation info is). >>> There are a couple of scripts that might be able to help with that (search >>> for snp): >>> >>> http://www.bioperl.org/wiki/Bioperl_scripts >>> >>> >>> You can then insert them into a RichSeq object as features and output in >>> genbank format. For that part, see the HOWTO: >>> >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>> >>> >>> Dave >>> >>> >> >> >> -- >> Jessica Jingping Sun >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at drycafe.net Thu Jun 10 16:21:28 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Thu, 10 Jun 2010 16:21:28 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. In-Reply-To: References: Message-ID: <6390F20C-9E9A-425E-AB59-33918612B052@drycafe.net> On Jun 10, 2010, at 2:53 PM, Chase Miller wrote: > I hope it's ok to post job openings here. So long as people who program in Perl aren't disqualified from applying :-) -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From shalabh.sharma7 at gmail.com Thu Jun 10 16:40:34 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Thu, 10 Jun 2010 16:40:34 -0400 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: Hi Veronica, You can also download the refseq release catalog. ftp://ftp.ncbi.nih.gov/refseq/release/release-catalog/ It contains all the information like GI and taxaIDs. With the help of a simple script you can parse the required information. Hope this helps. Thanks Shalabh Sharma On Thu, Jun 10, 2010 at 4:00 PM, Dave Messina wrote: > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their databases > from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (-l) > that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy > Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but > not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:11:50 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:11:50 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Eutils will do it with the right query: use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'nucleotide', -term => 'txid9940[Organism:noexp]', -email => 'mymail at foo.bar', -retmax => 1000000); # query hits print "Count = ",$factory->get_count,"\n"; # UIDs my @ids = $factory->get_ids; --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, 11 June 2010 8:01 a.m. > To: armendarez77 at hotmail.com > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > ry > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their > databases from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (- > l) that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a > Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a > Tax Id, but not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > :WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Thu Jun 10 17:35:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 16:35:48 -0500 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: You can get up-to-date files mapping GI to TaxID here (nr and nt): ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ chris On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > Eutils will do it with the right query: > > > > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'nucleotide', > -term => 'txid9940[Organism:noexp]', > -email => 'mymail at foo.bar', > -retmax => 1000000); > > # query hits > print "Count = ",$factory->get_count,"\n"; > # UIDs > my @ids = $factory->get_ids; > > > --Russell > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, 11 June 2010 8:01 a.m. >> To: armendarez77 at hotmail.com >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID >> >> Hi Veronica, >> >> These days when you run BLAST at the NCBI server, you're running BLAST+, >> which is their complete rewrite of (and replacement for) BLAST. >> >> You can also download BLAST+ and do pretty much everything on your local >> machine that you can do on their server, including limit by taxonomy. >> >> I think this is the right parameter: >> >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que >> ry >> >> Incidentally, BLAST+ has this awesome feature whereby you can, from the >> command line, run searches remotely on their server against their >> databases from the command line, just by adding the --remote flag. >> >> >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by >> the way.) >> >> Dave >> >> >> >> On Jun 10, 2010, at 4:54 PM, wrote: >> >>> >>> Hello, >>> >>> Is there a BioPerl method that will give a list of GIs for a specified >> NCBI taxonomy Id? >>> >>> I've previously tried using Urlapi to BLAST primers against the nr >> database on the NCBI server, but recently I keep getting a >>> 'Bad Gateway' error. While my system admin is looking into this, I've >>> decided to go another route. Therefore, I've downloaded the NCBI nr >> database. >>> >>> The problem I've run into is restricting the BLAST against the nr >> database to a subset of sequences. The NCBI Blast tools have an option (- >> l) that does this, but it requires a list of GI's. >>> >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids >> (Entrez Query). Therefore, is there a way to get all GIs within a >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a >> Tax Id, but not the reverse. >>> >>> >>> Thank you, >>> >>> Veronica >>> >>> >>> >>> >>> _________________________________________________________________ >>> Hotmail is redefining busy with tools for the New Busy. Get more from >> your inbox. >>> >> http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON >> :WL:en-US:WM_HMP:042010_2 >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:43:55 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:43:55 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> That's the way I usually do it as NCBI/eUtils can be a bit flakey. Not BioPerls fault of course ;-) zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' --Russell > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, 11 June 2010 9:36 a.m. > To: Smithies, Russell > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > bio.org' > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > chris > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > Eutils will do it with the right query: > > > > > > > > > > use Bio::DB::EUtilities; > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > -db => 'nucleotide', > > -term => 'txid9940[Organism:noexp]', > > -email => 'mymail at foo.bar', > > -retmax => 1000000); > > > > # query hits > > print "Count = ",$factory->get_count,"\n"; > > # UIDs > > my @ids = $factory->get_ids; > > > > > > --Russell > > > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > >> Sent: Friday, 11 June 2010 8:01 a.m. > >> To: armendarez77 at hotmail.com > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > >> > >> Hi Veronica, > >> > >> These days when you run BLAST at the NCBI server, you're running > BLAST+, > >> which is their complete rewrite of (and replacement for) BLAST. > >> > >> You can also download BLAST+ and do pretty much everything on your > local > >> machine that you can do on their server, including limit by taxonomy. > >> > >> I think this is the right parameter: > >> > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > >> ry > >> > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > >> command line, run searches remotely on their server against their > >> databases from the command line, just by adding the --remote flag. > >> > >> > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > by > >> the way.) > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 4:54 PM, wrote: > >> > >>> > >>> Hello, > >>> > >>> Is there a BioPerl method that will give a list of GIs for a specified > >> NCBI taxonomy Id? > >>> > >>> I've previously tried using Urlapi to BLAST primers against the nr > >> database on the NCBI server, but recently I keep getting a > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > >> database. > >>> > >>> The problem I've run into is restricting the BLAST against the nr > >> database to a subset of sequences. The NCBI Blast tools have an option > (- > >> l) that does this, but it requires a list of GI's. > >>> > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > >> (Entrez Query). Therefore, is there a way to get all GIs within a > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > a > >> Tax Id, but not the reverse. > >>> > >>> > >>> Thank you, > >>> > >>> Veronica > >>> > >>> > >>> > >>> > >>> _________________________________________________________________ > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > >> your inbox. > >>> > >> > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > >> :WL:en-US:WM_HMP:042010_2 > >>> _______________________________________________ > >>> Bioperl-l mailing list > >>> Bioperl-l at lists.open-bio.org > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Thu Jun 10 21:05:29 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 10 Jun 2010 20:05:29 -0500 Subject: [Bioperl-l] Regulars on IRC - GMT offsets, locations Message-ID: <69077B6F-6C31-4094-AEA8-1446C8DCABBF@jays.net> I added GMT offsets and locations. I didn't have all the info, so I made some of them up. For your correction: http://bioperl.org/wiki/IRC#Regulars_on_IRC ptl is my favorite fake location. :) Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Thu Jun 10 23:27:11 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Thu, 10 Jun 2010 22:27:11 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed Message-ID: Hi, I'm trying to get the pubmed ids from the following link. I use the code pasted at the end of the mail (the output is pasted as well). Note that more ids than necessary are returned. Then I try to use the option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let me know how to get the correct download of the ids in the following page by bioperl EUtilities? http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 -- Regards, Peng $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n"; print $factory->get_Response->content; $ ./main.pl 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 gene 6476 pubmed gene_pubmed 19416921 19121318 17194452 16802690 16543230 16344560 16329100 15944403 15522234 14724820 12477932 11340066 11329013 11003604 10903344 9092938 8609217 8521865 7566098 3925457 3896809 3178143 2962903 1717481 1677636 1560017 1353958 pubmed gene_pubmed_citedinomim 16329100 14724820 14276572 11340066 10903344 8648532 8648527 8609217 8576798 8118103 7371476 6357634 6082247 5848222 5436545 5333958 5075694 5041318 5015965 4952790 4742566 4579420 4164045 3925457 3807985 3553946 3403721 3178143 2962903 1717481 1560017 1353958 1256470 pubmed gene_pubmed_rif 19121318 17194452 16802690 16543230 16329100 15944403 15522234 8521865 From cjfields at illinois.edu Thu Jun 10 23:48:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 22:48:37 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <4DD0E356-4218-4808-B5E5-76D6851DAE82@illinois.edu> Limit the IDs down to a specific dbfrom-db link using -linkname, otherwise it assumes all links and just gloms everything together (yes, pretty helpful of them). Here's the link for those: http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/entrezlinks.html Make sure to use your real email if you aren't already (you'll likely be IP banned otherwise). chris #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -linkname => 'gene_pubmed', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n" On Jun 10, 2010, at 10:27 PM, Peng Yu wrote: > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 23:52:36 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 15:52:36 +1200 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E727@exchsth.agresearch.co.nz> I suspect it's not possible without getting ASN.1 back and parsing that. As you already have a working URL, why not use LWP? use LWP::Simple; my $content = get("http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476") or die $!; my @ids = grep(/\d+<\/Id>/,(split("\n",$content)); --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, 11 June 2010 3:27 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] Error when using EUtilities to download elink with > parameter LinkName=gene_pubmed > > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=g > ene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15 > 522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,86092 > 17,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017 > ,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609 > 217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,507569 > 4,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946, > 3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452, > 16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From armendarez77 at hotmail.com Fri Jun 11 01:08:22 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 22:08:22 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> References: , <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se>, <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz>, , <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> Message-ID: Thank you for all of the choices. The 'zgrep' command works a treat. Veronica > From: Russell.Smithies at agresearch.co.nz > To: cjfields at illinois.edu > CC: David.Messina at sbc.su.se; armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > Date: Fri, 11 Jun 2010 09:43:55 +1200 > Subject: RE: [Bioperl-l] Get GIs from Taxonomy ID > > That's the way I usually do it as NCBI/eUtils can be a bit flakey. > Not BioPerls fault of course ;-) > > zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' > > > > --Russell > > > -----Original Message----- > > From: Chris Fields [mailto:cjfields at illinois.edu] > > Sent: Friday, 11 June 2010 9:36 a.m. > > To: Smithies, Russell > > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > > bio.org' > > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > > > chris > > > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > > > Eutils will do it with the right query: > > > > > > > > > > > > > > > use Bio::DB::EUtilities; > > > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > > -db => 'nucleotide', > > > -term => 'txid9940[Organism:noexp]', > > > -email => 'mymail at foo.bar', > > > -retmax => 1000000); > > > > > > # query hits > > > print "Count = ",$factory->get_count,"\n"; > > > # UIDs > > > my @ids = $factory->get_ids; > > > > > > > > > --Russell > > > > > > > > >> -----Original Message----- > > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > > >> Sent: Friday, 11 June 2010 8:01 a.m. > > >> To: armendarez77 at hotmail.com > > >> Cc: bioperl-l at lists.open-bio.org > > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > >> > > >> Hi Veronica, > > >> > > >> These days when you run BLAST at the NCBI server, you're running > > BLAST+, > > >> which is their complete rewrite of (and replacement for) BLAST. > > >> > > >> You can also download BLAST+ and do pretty much everything on your > > local > > >> machine that you can do on their server, including limit by taxonomy. > > >> > > >> I think this is the right parameter: > > >> > > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > > >> ry > > >> > > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > > >> command line, run searches remotely on their server against their > > >> databases from the command line, just by adding the --remote flag. > > >> > > >> > > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > > by > > >> the way.) > > >> > > >> Dave > > >> > > >> > > >> > > >> On Jun 10, 2010, at 4:54 PM, wrote: > > >> > > >>> > > >>> Hello, > > >>> > > >>> Is there a BioPerl method that will give a list of GIs for a specified > > >> NCBI taxonomy Id? > > >>> > > >>> I've previously tried using Urlapi to BLAST primers against the nr > > >> database on the NCBI server, but recently I keep getting a > > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > > >> database. > > >>> > > >>> The problem I've run into is restricting the BLAST against the nr > > >> database to a subset of sequences. The NCBI Blast tools have an option > > (- > > >> l) that does this, but it requires a list of GI's. > > >>> > > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > > >> (Entrez Query). Therefore, is there a way to get all GIs within a > > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > > a > > >> Tax Id, but not the reverse. > > >>> > > >>> > > >>> Thank you, > > >>> > > >>> Veronica > > >>> > > >>> > > >>> > > >>> > > >>> _________________________________________________________________ > > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > > >> your inbox. > > >>> > > >> > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > > >> :WL:en-US:WM_HMP:042010_2 > > >>> _______________________________________________ > > >>> Bioperl-l mailing list > > >>> Bioperl-l at lists.open-bio.org > > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >> > > >> > > >> _______________________________________________ > > >> Bioperl-l mailing list > > >> Bioperl-l at lists.open-bio.org > > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > ======================================================================= > > > Attention: The information contained in this message and/or attachments > > > from AgResearch Limited is intended only for the persons or entities > > > to which it is addressed and may contain confidential and/or privileged > > > material. Any review, retransmission, dissemination or other use of, or > > > taking of any action in reliance upon, this information by persons or > > > entities other than the intended recipients is prohibited by AgResearch > > > Limited. If you have received this message in error, please notify the > > > sender immediately. > > > ======================================================================= > > > > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy is not the too busy. Combine all your e-mail accounts with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4 From sdavis2 at mail.nih.gov Fri Jun 11 10:36:45 2010 From: sdavis2 at mail.nih.gov (Sean Davis) Date: Fri, 11 Jun 2010 10:36:45 -0400 Subject: [Bioperl-l] [OT] Bioconductor Conference Message-ID: Sorry for the slightly off-topic message, but I think there are plenty of overlapping interests between bioperl and bioconductor. I wanted to announce the upcoming Bioconductor 2010 conference. Besides the email below, if there are questions that I can answer, let me know. Thanks, Sean ------------------- BioC 2010 is coming up quickly, and we urge you to sign up today! We're meeting July 29-30 (Developer Day July 28) in Seattle. There is a terrific line-up of speakers (see below) and the work shops are being finalized (see https://secure.bioconductor.org/BioC2010/labs.php for a preliminary list, subject to change). Also, we have introduced a special 'Flow Cytometery' track. This provides access to the Friday afternoon practicals sessions. These sessions will include, among others, practicals relevant to cytometry. Finally, the deadline for scholarship applications is June 15, just a few days away! Questions? Send email to biocworkshop at fhcrc.org Thursday 8:30 - 9:15 Atul Butte, Stanford Center for Biomedical Informatics Research. Exploring Genomic Medicine Through Integrative Bioinformatics. 9:15 - 10:00 Stephen Friend, SAGE Bionetworks. Risks and Opportunities for Disease Models based on Integrative Genomic Approaches. 10:30 - 11:15 Jay Shendure, University of Washington. Exome sequencing and human genetics. 11:15 - 12:00 To be confirmed. Friday 8:30 - 9:15 Simon Tavar?, University of Southern California. 9:15 - 10:00 Paul Flicek, European Bioinformatics Institute. Generation gap: How existing bioinformatics resources are adapting to high-throughput sequencing. 10:30 - 11:15 Lior Pachter, University of California, Berkeley. 11:15 - 12:00 Simon Anders, European Bioinformatics Institute. Inference of differential signal in high throughput sequencing count data. From jessica.sun at gmail.com Fri Jun 11 12:26:12 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:26:12 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Great ! Yet, how do you add this SNP as an Feature tag named as Variation into the gbk file format automatically? thx On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > Nice, Chris! > > I've added it to the EUtils cookbook. > > Dave > > > > On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > > > It's much easier to work with the GI than the accession. NCBI > unfortunately just recently 'broke' their acc->gi stuff via efetch; you have > to use rettype='seqid' and munge ASN.1 to get everything (though it is nice > in a way for ID mapping). > > > > After the initial step of grabbing the GI for NG_011506, though, you can > use elink to grab the SNP IDs, then use efetch to get the actual SNP files, > or esummary for the summary info. > > > > #!/usr/bin/perl -w > > > > use Modern::Perl; > > use Bio::DB::EUtilities; > > > > my $id = '224809339'; > > > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > > -id => $id, > > -email => 'setyourown at foo.bar', > > -verbose => 1, > > -dbfrom => 'nuccore', > > -db => 'snp', > > -cmd => 'neighbor_history', > > ); > > > > my $hist = $eutil->next_History || die "No history data returned"; > > > > $eutil->set_parameters(-eutil => 'efetch', > > -history => $hist, > > -retmode => 'text', > > # 'chr', 'flt', 'brief', 'rsr', 'docset' > > -rettype => 'chr' > > ); > > > > $eutil->get_Response(-file => 'snps.txt'); > > > > # or ... > > > > $eutil->set_parameters(-eutil => 'esummary', > > -history => $hist, > > ); > > > > $eutil->print_all; > > > > # chris > > > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > > > >> Thanks Dave. > >> the variation information is not present in the version of NG_011506 I > found > >> at Genbank.) -- Yes, then if you click on the right side customer view > there > >> is a check box Features added by NCBI :209 snps, if you check that it > will > >> add all the variations in the gbk fomat. I found this would be a neat > >> feature if it can automatically load by bioperl with an option turn on. > >> > >> > >> > >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >wrote: > >> > >>> Hi Jessica, > >>> > >>> Please keep the BioPerl list on the Cc line so everyone can follow > along. > >>> > >>> > >>>> Follow your approach it did not seem to me you can have Variation tag > >>> included which > >>>> list the know dbSNP location, id and allele changes? > >>> > >>> Ah okay, I assumed the file you attached was obtained directly from > Genbank > >>> and that the variation info therein was already included. (It appears > that's > >>> not the case ? the variation information is not present in the version > of > >>> NG_011506 I found at Genbank.) > >>> > >>> If you want to include your own custom information in a genbank file, > >>> you'll have to pull it out of dbSNP (or wherever the variation info > is). > >>> There are a couple of scripts that might be able to help with that > (search > >>> for snp): > >>> > >>> http://www.bioperl.org/wiki/Bioperl_scripts > >>> > >>> > >>> You can then insert them into a RichSeq object as features and output > in > >>> genbank format. For that part, see the HOWTO: > >>> > >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>> > >>> > >>> Dave > >>> > >>> > >> > >> > >> -- > >> Jessica Jingping Sun > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > -- Jessica Jingping Sun From cjfields at illinois.edu Fri Jun 11 12:30:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 11 Jun 2010 11:30:59 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. chris On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > into the gbk file format automatically? > > thx > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > >> Nice, Chris! >> >> I've added it to the EUtils cookbook. >> >> Dave >> >> >> >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: >> >>> It's much easier to work with the GI than the accession. NCBI >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you have >> to use rettype='seqid' and munge ASN.1 to get everything (though it is nice >> in a way for ID mapping). >>> >>> After the initial step of grabbing the GI for NG_011506, though, you can >> use elink to grab the SNP IDs, then use efetch to get the actual SNP files, >> or esummary for the summary info. >>> >>> #!/usr/bin/perl -w >>> >>> use Modern::Perl; >>> use Bio::DB::EUtilities; >>> >>> my $id = '224809339'; >>> >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', >>> -id => $id, >>> -email => 'setyourown at foo.bar', >>> -verbose => 1, >>> -dbfrom => 'nuccore', >>> -db => 'snp', >>> -cmd => 'neighbor_history', >>> ); >>> >>> my $hist = $eutil->next_History || die "No history data returned"; >>> >>> $eutil->set_parameters(-eutil => 'efetch', >>> -history => $hist, >>> -retmode => 'text', >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' >>> -rettype => 'chr' >>> ); >>> >>> $eutil->get_Response(-file => 'snps.txt'); >>> >>> # or ... >>> >>> $eutil->set_parameters(-eutil => 'esummary', >>> -history => $hist, >>> ); >>> >>> $eutil->print_all; >>> >>> # chris >>> >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: >>> >>>> Thanks Dave. >>>> the variation information is not present in the version of NG_011506 I >> found >>>> at Genbank.) -- Yes, then if you click on the right side customer view >> there >>>> is a check box Features added by NCBI :209 snps, if you check that it >> will >>>> add all the variations in the gbk fomat. I found this would be a neat >>>> feature if it can automatically load by bioperl with an option turn on. >>>> >>>> >>>> >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >> wrote: >>>> >>>>> Hi Jessica, >>>>> >>>>> Please keep the BioPerl list on the Cc line so everyone can follow >> along. >>>>> >>>>> >>>>>> Follow your approach it did not seem to me you can have Variation tag >>>>> included which >>>>>> list the know dbSNP location, id and allele changes? >>>>> >>>>> Ah okay, I assumed the file you attached was obtained directly from >> Genbank >>>>> and that the variation info therein was already included. (It appears >> that's >>>>> not the case ? the variation information is not present in the version >> of >>>>> NG_011506 I found at Genbank.) >>>>> >>>>> If you want to include your own custom information in a genbank file, >>>>> you'll have to pull it out of dbSNP (or wherever the variation info >> is). >>>>> There are a couple of scripts that might be able to help with that >> (search >>>>> for snp): >>>>> >>>>> http://www.bioperl.org/wiki/Bioperl_scripts >>>>> >>>>> >>>>> You can then insert them into a RichSeq object as features and output >> in >>>>> genbank format. For that part, see the HOWTO: >>>>> >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>>>> >>>>> >>>>> Dave >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jessica Jingping Sun >>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Fri Jun 11 12:33:07 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:33:07 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: That was what I thought as well. It will be very nice that it can be done within bioperl as well. On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the > result is either cached or run on-the-fly. When I retrieved the full-length > record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > > > thx > > > > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina >wrote: > > > >> Nice, Chris! > >> > >> I've added it to the EUtils cookbook. > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > >> > >>> It's much easier to work with the GI than the accession. NCBI > >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you > have > >> to use rettype='seqid' and munge ASN.1 to get everything (though it is > nice > >> in a way for ID mapping). > >>> > >>> After the initial step of grabbing the GI for NG_011506, though, you > can > >> use elink to grab the SNP IDs, then use efetch to get the actual SNP > files, > >> or esummary for the summary info. > >>> > >>> #!/usr/bin/perl -w > >>> > >>> use Modern::Perl; > >>> use Bio::DB::EUtilities; > >>> > >>> my $id = '224809339'; > >>> > >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > >>> -id => $id, > >>> -email => 'setyourown at foo.bar', > >>> -verbose => 1, > >>> -dbfrom => 'nuccore', > >>> -db => 'snp', > >>> -cmd => 'neighbor_history', > >>> ); > >>> > >>> my $hist = $eutil->next_History || die "No history data returned"; > >>> > >>> $eutil->set_parameters(-eutil => 'efetch', > >>> -history => $hist, > >>> -retmode => 'text', > >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' > >>> -rettype => 'chr' > >>> ); > >>> > >>> $eutil->get_Response(-file => 'snps.txt'); > >>> > >>> # or ... > >>> > >>> $eutil->set_parameters(-eutil => 'esummary', > >>> -history => $hist, > >>> ); > >>> > >>> $eutil->print_all; > >>> > >>> # chris > >>> > >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >>> > >>>> Thanks Dave. > >>>> the variation information is not present in the version of NG_011506 I > >> found > >>>> at Genbank.) -- Yes, then if you click on the right side customer view > >> there > >>>> is a check box Features added by NCBI :209 snps, if you check that it > >> will > >>>> add all the variations in the gbk fomat. I found this would be a neat > >>>> feature if it can automatically load by bioperl with an option turn > on. > >>>> > >>>> > >>>> > >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >>> wrote: > >>>> > >>>>> Hi Jessica, > >>>>> > >>>>> Please keep the BioPerl list on the Cc line so everyone can follow > >> along. > >>>>> > >>>>> > >>>>>> Follow your approach it did not seem to me you can have Variation > tag > >>>>> included which > >>>>>> list the know dbSNP location, id and allele changes? > >>>>> > >>>>> Ah okay, I assumed the file you attached was obtained directly from > >> Genbank > >>>>> and that the variation info therein was already included. (It appears > >> that's > >>>>> not the case ? the variation information is not present in the > version > >> of > >>>>> NG_011506 I found at Genbank.) > >>>>> > >>>>> If you want to include your own custom information in a genbank file, > >>>>> you'll have to pull it out of dbSNP (or wherever the variation info > >> is). > >>>>> There are a couple of scripts that might be able to help with that > >> (search > >>>>> for snp): > >>>>> > >>>>> http://www.bioperl.org/wiki/Bioperl_scripts > >>>>> > >>>>> > >>>>> You can then insert them into a RichSeq object as features and output > >> in > >>>>> genbank format. For that part, see the HOWTO: > >>>>> > >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>>>> > >>>>> > >>>>> Dave > >>>>> > >>>>> > >>>> > >>>> > >>>> -- > >>>> Jessica Jingping Sun > >>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >> > >> > > > > > > -- > > Jessica Jingping Sun > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Fri Jun 11 17:43:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 11 Jun 2010 23:43:35 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: <2332DA3A-27E0-478A-8FC6-910A9E087BB3@sbc.su.se> On Jun 11, 2010, at 6:33 PM, Jessica Sun wrote: > That was what I thought as well. It will be very nice that it can be done within bioperl as well. Just to clarify, it can be done within BioPerl, but manually. That is, you'll have to take the SNP information you have retrieved using the code Chris posted and then add it as features to the RichSeq object, which is BioPerl's internal representation of a Genbank record. I don't think that this complicated set of procedures would fit very neatly into BioPerl as a more automatic thing, but of course if anyone is interested in coding it up we're more than happy to help find a place for it... Dave > > On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > From ross at cuhk.edu.hk Mon Jun 14 08:48:28 2010 From: ross at cuhk.edu.hk (Ross KK Leung) Date: Mon, 14 Jun 2010 20:48:28 +0800 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> Message-ID: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> If I have an accession number for an mRNA/cDNA/gene (e.g. http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I retrieve the genbank file and parse /dbxref then I may sometimes be able to get some extra information but then the page is not readily usable, e.g. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo rt&list_uids=24377 is there any way to automatically retrieve its upstream & downstream genomic sequence (e.g. 500bp)? From David.Messina at sbc.su.se Mon Jun 14 09:57:30 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 14 Jun 2010 15:57:30 +0200 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <20B7D7C0-137D-4EFB-9E7B-2DB0F5EB6785@sbc.su.se> Hi Ross, The code examples here should work: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#esummary_-.3E_efetch except you'll need to change the seq_start and seq_stop parameters to include your extra bases. i.e. -seq_start => $start + 1 - 500, -seq_stop => $end + 1 + 500, I haven't tested this ? you may need to take the strand information into account when adding or subtracting from the start and end positions. DAve From jay at jays.net Mon Jun 14 12:30:57 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 11:30:57 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() Message-ID: Hola, I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be adding one unless someone points out that this is a bad idea for some reason. Also, this seems insufficient for a branch, so it'll just be a single commit to master unless someone slaps me. Thanks, Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From lincoln.stein at gmail.com Mon Jun 14 12:35:28 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 14 Jun 2010 12:35:28 -0400 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: I suggest that you use Data::Dumper to implement clone (or alternatively Storable's dclone() method). I just had a look at how I did the clone in Lite, and it is a bit fragile if someone subclasses Lite. I also think there is a Clone module in CPAN. Lincoln On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > Hola, > > I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite > has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be > adding one unless someone points out that this is a bad idea for some > reason. > > Also, this seems insufficient for a branch, so it'll just be a single > commit to master unless someone slaps me. > > Thanks, > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From cjfields at illinois.edu Mon Jun 14 12:58:40 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 14 Jun 2010 11:58:40 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: <0BF96232-1390-42CD-9515-06A5D66C3B2E@illinois.edu> Both Data::Dumper and Storable are part of perl core now. I've used Clone.pm w/o problems in some of my code, and wouldn't have a problem adding that as a dependency for bioperl (it's currently listed as a recommended module). chris On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). I just had a look at how I did the clone in > Lite, and it is a bit fragile if someone subclasses Lite. > > I also think there is a Clone module in CPAN. > > Lincoln > > On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > >> Hola, >> >> I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite >> has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be >> adding one unless someone points out that this is a bad idea for some >> reason. >> >> Also, this seems insufficient for a branch, so it'll just be a single >> commit to master unless someone slaps me. >> >> Thanks, >> >> Jay Hannah >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jason at bioperl.org Mon Jun 14 14:48:11 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 14 Jun 2010 14:48:11 -0400 Subject: [Bioperl-l] Script to Calculate Pairwise Ka,Ks In-Reply-To: References: Message-ID: <4C16796B.4090909@bioperl.org> I think you can also just add that clustal dir in your PATH. I'm fwding to bioperl list for help as I don't have time to debug right now, sorry. -jason Haktan Suren wrote, On 6/14/10 1:50 PM: > Dear Jason Stajich, > > First of all, I would like to thank you for the great script that you > wrote. However I wasn't able to run it because it gives me the > fallowing error. I have looked into web but haven't found the solution > yet. I appreciate if you could provide me any kind of help. > > The error is > Could not find the executable for clustalw, make sure you have > installed it and have either set CLUSTALWDIR or it is in your PATH at > kaks2.pl line 108. > For your information, I have downloaded clustalw-2.0.12-macosx.dmg > > from http://www.clustal.org/download/current/ and pointed this > software at the very beginning of the code like > BEGIN { $ENV{CLUSTALDIR} = > '/Users/hsuren/Downloads/BioPerl-1.6.1/Bio/Tools/Run/Alignment/clustalw/clustalw2/' > } > But it still gives me the same error. I am attaching the perl script > as well incase you need. > > > ------------------------------------------------------------------------ > > > Best Regards, > Haktan Suren > From jay at jays.net Mon Jun 14 16:30:05 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 15:30:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). Here's my stab-so-far at using Storable dclone(): http://github.com/bioperl/bioperl-live/tree/topic/jhannah-seqfeature-clone Any and all feedback most welcome. I've never modified Root.pm before. Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From roi.brodo at hotmail.com Wed Jun 16 03:10:45 2010 From: roi.brodo at hotmail.com (Roi Brodo) Date: Wed, 16 Jun 2010 07:10:45 +0000 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA Message-ID: Hello, Suppose I have some circular DNA RefSeq in a Genbank format. I would like to create a new (smaller) Genbank file (both features and sequence) containing only a range of nucleotides from the original file, but a range tha overlaps the "end". For example, if my original Genbank spans 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, 1-100,000), so the new Genbank file will actually contain 300,000 bp from the circular DNA. How can I do that? Again, my input is a Genbank file and output should also be a Gebnank file. Thanks! - Roi _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From roy.chaudhuri at gmail.com Wed Jun 16 06:07:35 2010 From: roy.chaudhuri at gmail.com (Roy Chaudhuri) Date: Wed, 16 Jun 2010 11:07:35 +0100 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA In-Reply-To: References: Message-ID: <4C18A267.4050000@gmail.com> Hi Roi, You need the trunc_with_features and cat methods in Bio::SeqUtils (haven't tested this code but I think it should work): use Bio::SeqIO; use Bio::SeqUtils; my $seq=Bio::SeqIO->new(-file=>$ARGV[0], -format=>'genbank')->next_seq; my $first=Bio::SeqUtils->trunc_with_features($seq, 800000, 1000000); my $second=Bio::SeqUtils->trunc_with_features($seq, 1, 100000); Bio::SeqUtils->cat($first, $second); Bio::SeqIO->new(-format=>'genbank')->write_seq($first); Cheers. Roy. On 16/06/2010 08:10, Roi Brodo wrote: > > Hello, > > > > Suppose I have some circular DNA RefSeq in a Genbank format. I would > like to create a new (smaller) Genbank file (both features and sequence) > containing only a range of nucleotides from the original file, but a > range tha overlaps the "end". For example, if my original Genbank spans > 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, > 1-100,000), so the new Genbank file will actually contain 300,000 bp > from the circular DNA. > > > > How can I do that? Again, my input is a Genbank file and output should > also be a Gebnank file. > > > > Thanks! > > - Roi > > > > > > > > > > > _________________________________________________________________ > The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. > http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From kai.blin at biotech.uni-tuebingen.de Thu Jun 17 04:23:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Thu, 17 Jun 2010 10:23:29 +0200 Subject: [Bioperl-l] Getting the HMMer3 parser integrated into the next BioPerl release, call for testing Message-ID: <1276763009.31442.8.camel@mikropc7.biotech.uni-tuebingen.de> Hi folks, in the past days, I've been working on the tests for the HMMer3 parser, and with my last commits all the tests are passing for all the output files I've seen. So I'd like to propose the bioperl-hmmer3[1] tree to be merged into the main tree for the next BioPerl release. Of course, if there's still some corner cases the parser doesn't handle that you're running into, please send me an output file showing the problem you're seeing, or, even better, send me a patch. :) Cheers, Kai [1] http://github.com/bioperl/bioperl-hmmer3 -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From jun.yin at ucd.ie Thu Jun 17 06:24:50 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 11:24:50 +0100 Subject: [Bioperl-l] Interface of the method Message-ID: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin From tuco at pasteur.fr Thu Jun 17 07:49:18 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 13:49:18 +0200 Subject: [Bioperl-l] Bio module using Moose Message-ID: <4C1A0BBE.3060304@pasteur.fr> Hi guys, I developed some new modules for BioPerl under Bio::Restriction. However, I used Moose to help me out writing code. Do you think I could submit these modules to BioPerl to be later integrated, hopefully, the way they are written (with Moose dependency)? Cheers -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From cjfields at illinois.edu Thu Jun 17 09:12:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 08:12:30 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A0BBE.3060304@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: Emmanuel, I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: http://github.com/cjfields/biome This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. Let me know if you want to go with the first one, I can add you to the project. chris On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > Hi guys, > > I developed some new modules for BioPerl under Bio::Restriction. > However, I used Moose to help me out writing code. > Do you think I could submit these modules to BioPerl to be later > integrated, hopefully, the way they are written (with Moose dependency)? > > Cheers > > -- > ------------------------- > Emmanuel Quevillon > Biological Software and Databases Group > Institut Pasteur > +33 1 44 38 95 98 > tuco at_ pasteur dot fr > ------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Thu Jun 17 09:42:08 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 14:42:08 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <008101cb0e22$e1657230$a4305690$%yin@ucd.ie> BTW, I am a student in the Google Summer of Code 2010. I am currently working on refactoring the Bio::Align subsystem. If you are interested in this project, please visit my coding blog: http://gsoc2010-junyin.blogspot.com/ Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Jun Yin Sent: Thursday, June 17, 2010 11:25 AM To: bioperl-l at lists.open-bio.org Cc: jun.yin at ucd.ie Subject: [Bioperl-l] Interface of the method Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From tuco at pasteur.fr Thu Jun 17 09:46:41 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 15:46:41 +0200 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: <4C1A2741.2080604@pasteur.fr> On 06/17/2010 03:12 PM, Chris Fields wrote: > Emmanuel, > > I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: > > 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > > http://github.com/cjfields/biome > Hi Chris, Yep I've seen it already from one of your email on the Moose list :) I can try plug my modules to your project, however my code might be not as evolved as yours, so it could need some improvements and tuning to run faster and better. > This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > > 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. > Well I don't really know. Let me think about it (between github and CPAN), I'll also need to read and understand carefully your biome project. Moreover, as already said in my previous emails, I am not very ease with Moose right now.... Anyway what I can do it to change my code to better fit with actual implementation of BioPerl 1.6 and send it to the team for later integration? I can also send you my Moosified version to have a look? Let me know Regards Emmanuel > Let me know if you want to go with the first one, I can add you to the project. > > chris > > On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > >> Hi guys, >> >> I developed some new modules for BioPerl under Bio::Restriction. >> However, I used Moose to help me out writing code. >> Do you think I could submit these modules to BioPerl to be later >> integrated, hopefully, the way they are written (with Moose dependency)? >> >> Cheers >> >> -- >> ------------------------- >> Emmanuel Quevillon >> Biological Software and Databases Group >> Institut Pasteur >> +33 1 44 38 95 98 >> tuco at_ pasteur dot fr >> ------------------------- >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From scott at scottcain.net Thu Jun 17 10:55:11 2010 From: scott at scottcain.net (Scott Cain) Date: Thu, 17 Jun 2010 10:55:11 -0400 Subject: [Bioperl-l] GMOD Meeting Announcement: September 13-14 in Cambridge, England Message-ID: Hello, Thanks to the prep work by Gos Micklem at Cambridge, I am pleased to announce that there will be a two day GMOD community meeting starting on Monday Septermber 13 in Cambridge, England. This meeting occurs immediately prior to the Genome Informatics meeting in Hinxton (for which the abstract deadline is June 25). Registration information for this meeting will be available in a few weeks, though I will accept suggestions for presentations now. Please feel free to forward this to colleagues or mailing lists that you think would be interested in this meeting. I look forward to seeing you in England this Fall. Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From russkieknigi at mail.ru Thu Jun 10 19:45:11 2010 From: russkieknigi at mail.ru (=?windows-1251?Q?=C0?=) Date: Fri, 11 Jun 2010 03:45:11 +0400 Subject: [Bioperl-l] =?windows-1251?q?a_possible_issue_in_synopsis_of___Bi?= =?windows-1251?b?b1BlcmwtMS42LjEgID4gIEJpbzo6UmVzdHJpY3Rpb246OkFu?= =?windows-1251?q?alysis?= Message-ID: Hi, An attempt to run synopsis code as is results in the following runtime error: Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. Replacing this: my $enzymes = $ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->unique_cutters), "\n"; with the following code: my $enzymes=$ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed results in an error message-free execution and the output appears reasonable Cheers, Alex From stefan.kirov at bms.com Tue Jun 15 10:39:48 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Tue, 15 Jun 2010 10:39:48 -0400 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <4C1790B4.1090307@bms.com> Try the ensembl API http://www.ensembl.org/info/docs/api/core/core_tutorial.html Cheers, Stefan On 6/14/2010 8:48 AM, Ross KK Leung wrote: > If I have an accession number for an mRNA/cDNA/gene (e.g. > http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I > retrieve the genbank file and parse /dbxref then I may sometimes be able to > get some extra information but then the page is not readily usable, e.g. > > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo > rt&list_uids=24377 > > is there any way to automatically retrieve its upstream& downstream genomic > sequence (e.g. 500bp)? > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From stefan.kirov at bms.com Thu Jun 17 10:53:32 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Thu, 17 Jun 2010 10:53:32 -0400 Subject: [Bioperl-l] Firefox extension project Message-ID: <4C1A36EC.9000204@bms.com> There isn't much about perl in this post, so I apologize for spamming the list, but I assumed there would be people interested in this. Please do not reply to the list, again this is not bioperl related. I have opened sourced a Firefox extension I have been developing and using for a while. The whole idea is to have a sequence analysis swiss army knife built in right in the browser. I started with incorporating some cool Javascript libraries, written by Paul Stothard (http://www.bioinformatics.org/sms2/). I have not incorporated all of those, but will if I find the time. In addition, you can decide to install emboss and clustalw (the extension comes with the source for clustal and emboss) and run them locally, which can be handy. I have started working also on SVG biograph libraries but these are quite incomplete, but I have been able to implement one graphical viewer- ORF finder, which I find quite handy. There are basic sequence parsing and fetching (NCBI) as well. Other things that work: very simple logical operations on sets, protein digest/ion generation tool. Sequence lists and projects should be functional in next release. There are 2 way to access the tools: right click and by opening the sidebar. The code behind this project is mainly Javascript, XUL, CSS and shell wrapper scripts. There is also some sqlite involved. I would be interested to hear any feedback, but would be even more excited if there are people who know these technologies (or willing to learn) and want to join in. Testers are also more than welcome. Since this is prealpha you need to be careful- I would advise anyone to have this extension installed in a non-production environment. I will upload a VirtualBox image to the SVN project in the next few days as well. Here is the project page: https://sourceforge.net/projects/biobrowserext/ Best way to contact me is kirovs at gmail Finally, developing extensions in firefox is just as much fun as programming perl (maybe more ;-) ). Cheers, Stefan Kirov -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From arthur11985 at hotmail.com Mon Jun 14 00:04:26 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Mon, 14 Jun 2010 04:04:26 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , Message-ID: Hi there I cannot access module Bio::Factory::EMBOSS; after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? my code is like following. #!/usr/bin/perl use warnings; use strict; use Bio::Factory::EMBOSS; Yours sincerely Arthur _________________________________________________________________ Looking for a place to manage all your online stuff? Download the new Windows Live http://download.live.com From julia.davison83 at googlemail.com Thu Jun 17 05:03:19 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Thu, 17 Jun 2010 02:03:19 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac Message-ID: <28912041.post@talk.nabble.com> Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From David.Messina at sbc.su.se Thu Jun 17 18:57:29 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 00:57:29 +0200 Subject: [Bioperl-l] a possible issue in synopsis of BioPerl-1.6.1 > Bio::Restriction::Analysis In-Reply-To: References: Message-ID: Hi Alex, Thanks for the report. Looks like that synopsis code no longer exists in the latest version of BioPerl. See http://github.com/bioperl/bioperl-live/blob/master/Bio/Restriction/EnzymeCollection.pm Dave On Jun 11, 2010, at 01:45 , ? wrote: > Hi, > > An attempt to run synopsis code as is results in the following runtime error: > > Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. > > Replacing this: > my $enzymes = $ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->unique_cutters), "\n"; > > > with the following code: > my $enzymes=$ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed > > results in an error message-free execution and the output appears reasonable > > Cheers, > Alex > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 17 19:48:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 01:48:35 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave From florent.angly at gmail.com Thu Jun 17 22:21:31 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 12:21:31 +1000 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: References: , Message-ID: <4C1AD82B.6070005@gmail.com> Hi Arthur, The message is quite descriptive... BioPerl cannot be found on your computer. This obviously leads to the question: how did you install BioPerl? See this for details on installing BioPerl: http://www.bioperl.org/wiki/Installing_BioPerl Regards, Florent On 14/06/10 14:04, Arthur Lin wrote: > Hi there > > I cannot access module Bio::Factory::EMBOSS; > after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? > > my code is like following. > > #!/usr/bin/perl > > use warnings; > use strict; > > use Bio::Factory::EMBOSS; > > Yours sincerely > Arthur > _________________________________________________________________ > Looking for a place to manage all your online stuff? Download the new Windows Live > http://download.live.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From florent.angly at gmail.com Thu Jun 17 23:36:14 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 13:36:14 +1000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , , <4C1AD82B.6070005@gmail.com> Message-ID: <4C1AE9AE.5030807@gmail.com> Arthur, Please when replying, use 'reply all'. Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. Thanks, Florent On 18/06/10 12:40, Arthur Lin wrote: > Hi Florent > > Thank you for your correspondence. I still have the same problem after > I followed the instruction on installing_BioPerl and installed through > cpan. > During the installation, I followed through the entire process with > default option. > Have you encountered anyone who has similar problem? > > Yours sincerely > Arthur > > > Date: Fri, 18 Jun 2010 12:21:31 +1000 > > From: florent.angly at gmail.com > > To: arthur11985 at hotmail.com > > CC: bioperl-l at bioperl.org > > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? > > > > Hi Arthur, > > > > The message is quite descriptive... BioPerl cannot be found on your > > computer. This obviously leads to the question: how did you install > BioPerl? > > See this for details on installing BioPerl: > > http://www.bioperl.org/wiki/Installing_BioPerl > > Regards, > > > > Florent > > > > > > > ------------------------------------------------------------------------ > Browse profiles for Free! Singles online now! > From cjfields at illinois.edu Thu Jun 17 23:52:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 22:52:20 -0500 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> <4C1AE9AE.5030807@gmail.com> Message-ID: <9C7D5D52-2656-4C9D-A9E9-09B7CD0539BE@illinois.edu> Bio::Factory::EMBOSS is in BioPerl-Run (a separate package), not BioPerl. You need to install that separately. chris On Jun 17, 2010, at 10:36 PM, Florent Angly wrote: > Arthur, > Please when replying, use 'reply all'. > Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. > Thanks, > Florent > > On 18/06/10 12:40, Arthur Lin wrote: >> Hi Florent >> >> Thank you for your correspondence. I still have the same problem after I followed the instruction on installing_BioPerl and installed through cpan. >> During the installation, I followed through the entire process with default option. >> Have you encountered anyone who has similar problem? >> >> Yours sincerely >> Arthur >> >> > Date: Fri, 18 Jun 2010 12:21:31 +1000 >> > From: florent.angly at gmail.com >> > To: arthur11985 at hotmail.com >> > CC: bioperl-l at bioperl.org >> > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? >> > >> > Hi Arthur, >> > >> > The message is quite descriptive... BioPerl cannot be found on your >> > computer. This obviously leads to the question: how did you install BioPerl? >> > See this for details on installing BioPerl: >> > http://www.bioperl.org/wiki/Installing_BioPerl >> > Regards, >> > >> > Florent >> > >> > >> >> >> ------------------------------------------------------------------------ >> Browse profiles for Free! Singles online now! > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From anthony.goldbloom at googlemail.com Thu Jun 17 19:32:16 2010 From: anthony.goldbloom at googlemail.com (Anthony Goldbloom) Date: Fri, 18 Jun 2010 09:32:16 +1000 Subject: [Bioperl-l] What has bioinformatics ever done for us? Message-ID: <68E72261-DAED-4C7A-98E1-574AEFB00C88@gmail.com> I'm passing this around the bioinformatics community as I think it's an interesting initiative. A British bioinformatician wants to open discussion about the greatest biological discovery made possible by bioinformatics. He has just launched a "brainstorming competition" with a small cash prize to stoke discussion. Kaggle is hosting the "brainstorming competition" at: http://kaggle.com/blog/2010/06/17/%EF%BB%BFwhat-has-bioinformatics-ever-done-for-us Hopefully members of this mailing list can contribute suggestions. Anthony ps Apologies for cross posting. From premkrishnanbv at gmail.com Fri Jun 18 01:14:27 2010 From: premkrishnanbv at gmail.com (Prem) Date: Fri, 18 Jun 2010 10:44:27 +0530 Subject: [Bioperl-l] "500 Cannot connect to ----------- (Bad Host name)" Message-ID: Dear friends We urgently need somebody's help to solve a problem in Bioperl. We are actually trying to develop an online tool for sequence analysis in linux pltaform (RedHat). The first part of the program is to retrieve sequences from ncbi.nlm.nih.gov . We wrote code for that. We are using redhat linux. We can run the program successfully through terminal. It creates a fasta file of the retrieved sequences and prints the count of the sequences. Now the problem is, when we try to run it in the browser using cgi perl its not working. When we checked the error_log it says something like this, "500 Cannot connect to ----------- (Bad Host name)" We have given full file permission using chmod 777 *. File is in the directory cgi-bin. We are using Apache/2.2.3(redhat). We try to call this perl script as a submit button action (online submission form). Here we are pasting the code for your kind consideration. Kindly help us... -------------------------------------------------------------------------------------- *newtest.cgi* - sequence retrieval program -------------------------------------------------------------------------------------- #!/usr/bin/perl print "Content-Type: text/html\n\n"; use Bio::Perl; use Bio::DB::GenBank; use Bio::DB::Query::GenBank; my $db = Bio::DB::GenBank->new(); my $query = Bio::DB::Query::GenBank->new (-db => 'nucleotide', -query => "Cocos nucifera[Organism]"); my $count = $query->count; my $stream = $db->get_Stream_by_query($query); while( my $seq = $stream->next_seq ) { write_sequence(">>Cocos_nucifera.fasta",'fasta',$seq); } print $count; -------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- *test.html* - sample html page --------------------------------------------------------------------------------------
 
Scientific name
(eg. Homo sapiens for human, Cocos nucifera for coconut etc.)
 
-------------------------------------------------------------------------------------- regards Prem krishnan B V Centre for Bioinformatics University of Kerala Kariavattom Campus Thiruvananthapuram From florent.angly at gmail.com Fri Jun 18 01:39:39 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 15:39:39 +1000 Subject: [Bioperl-l] Status of assembly modules In-Reply-To: References: Message-ID: <4C1B069B.5020105@gmail.com> Hi Joshua, Yes, there have been interesting improvements in the assembly BioPerl module since v1.6.1. You can find these changes in the development version of BioPerl at http://github.com/bioperl/. I'll take this opportunity to introduce people who don't follow the commit messages to the new features that have been introduced: First, there is support for more file formats from high-throughput platforms, including those generated by de novo assembly and comparative assembly tools, such as: * Roche 454 GS Assembler, aka Newbler (the ACE-454 variant) * Maq * Sam * Bowtie There is support for running a lot more of these tools in Bioperl-run Bio::Tools::Run : * Roche 454 GS Assembler, aka Newbler * Minimo * Maq * Samtools * Bowtie In terms of writing assembly file, I added the option to write ACE files, which is quite useful because maybe assembly programs recognize this format. So now you can read assemblies, modify them as you see fit and exporting them to other programs by writing the modified assembly in an ACE file. The internals of the IO parsers have acquired some granularity as it is now possible to read/write assembly files entirely, or one contig at a time. This is terrific to reduce memory usage. That's about it... Regards, Florent PS/ Josh, you filed bug reports related to several of these issues (http://bugzilla.open-bio.org/show_bug.cgi?id=2726, http://bugzilla.open-bio.org/show_bug.cgi?id=2483). I am closing the ones that were not closed yet and thank you for submitting patches. On 18/06/10 14:00, Joshua Udall wrote: > Florent - > > I didn't want to ask a direct question on-list to perhaps avoid > confusion. Were you able to improve/submit a ContigIO to bioperl that > works with one entry at a time (instead of slurping the entire ace > file)? > > From David.Messina at sbc.su.se Fri Jun 18 05:37:31 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 11:37:31 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Message-ID: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave From awitney at sgul.ac.uk Fri Jun 18 05:39:15 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Fri, 18 Jun 2010 10:39:15 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> On 17 Jun 2010, at 10:03, perlcurl wrote: > I have the Bioperl files downloaded, but when I try to run a simple script > (even just use Bio::Perl, which has been suggested as an easy test), I get > this message: "Can't locate Bio/Perl.pm in @INC " followed by a long > directry list. Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be located in that "long directory list" for Perl to find it. Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix HTH adam From jun.yin at ucd.ie Fri Jun 18 04:59:29 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 09:59:29 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Hi, Dave, Thx a million for your reply. But I have to say I am a bit confused. In the BioPerl guide, http://www.bioperl.org/wiki/Advanced_BioPerl They say that, Capital word should be used for methods returning objects, for example $aln->get_SeqFeatures; #which returns Bio::SeqFeature objects So, $aln->select() actually returns Bio::LocatableSeq objects, I think it is probably better to use $aln->select_Seqs; For the $new_aln=$aln->select_Seqs([1,3,5..10,15],"toggle"); I am thinking of assigning the first argument of the methods as coordinates or position of the sequences, and the rest of the arguments are parameters. Thus an array reference [1,3,5..10] seems better than a list (1,3,5..10), the latter will be hard to recognize the other parameters. I plan to write: Sub select_Seqs { my($self, at args)=@_; my %params; my @new_coords; if(ref($args[0] eq "ARRAY") { my $coords=shift @args; #@newcoords=_cont_coord($coords); #do something with the cords reference } else { #some warning } #do something with the other parameters if(@args) { @{$params{@args}}=undef; #do something to recognize the other parameters } #rest of the code } And of course, I can write a method as you suggest $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); Then maybe I should write all the methods in this package, which receives multiple arguments, using this way. Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Dave Messina [mailto:David.Messina at sbc.su.se] Sent: Friday, June 18, 2010 12:49 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:43:38 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:43:38 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of perlcurl Sent: Thursday, June 17, 2010 10:03 AM To: Bioperl-l at lists.open-bio.org Subject: [Bioperl-l] Install problem, Mac Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:47:30 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:47:30 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Message-ID: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Hi, Dave, No problem. I think your suggestion of using $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); is more reasonable. It is a more BioPerl way of defined parameters. And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); will also be recognized for the simplicity of use. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina Sent: Friday, June 18, 2010 10:38 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 09:41:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 08:41:32 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Fri Jun 18 11:05:41 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 16:05:41 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Hi, Chris, Ok, I see. Then it is better to support a call of the method like: $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); and, $newaln=$aln->select_Seqs([1, 3, 5..10,15]); But '-seqs' doesnot sound very good, I will prefer '-orders'. Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Chris Fields [mailto:cjfields at illinois.edu] Sent: Friday, June 18, 2010 2:42 PM To: Jun Yin Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 11:26:33 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 10:26:33 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Message-ID: <5A6D64AF-0EFB-427A-899D-E7FB43ADDAA2@illinois.edu> Jun, Have to go back and see what 'toggle' does, but beyond that changing it works for me. Just to note, if this is a change directly in Bio::SimpleAlign or a modification of the Bio::Align::AlignI interface we will need to add deprecation warnings to the older methods (can't just remove them). If this a newer interface then it won't be as much of a problem, but we also can't just change Bio::AlignIO to return these instead. We can now easily do this so they go off with a predetermined minor version of Bio::Root::Root, see Bio::SimpleAlign::no_sequences/num_sequences for an example using deprecated(). (Note: At some point this deprecated may need to be modified to rely more on the module's version number, such as cases where we split off code and it will need a separate numbering scheme. But for now it works). chris On Jun 18, 2010, at 10:05 AM, Jun Yin wrote: > Hi, Chris, > > Ok, I see. Then it is better to support a call of the method like: > > $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); > and, > $newaln=$aln->select_Seqs([1, 3, 5..10,15]); > > But '-seqs' doesnot sound very good, I will prefer '-orders'. > > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, June 18, 2010 2:42 PM > To: Jun Yin > Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Jun, > > It all depends on optimization. I like the named argument version myself. > The current bioperl named parameters implementation requires, in order to > parse out the named parameters, you have to call either the core > _rearrange() method or Lincoln's rearrange() utility for consistency (deals > with all sorts of variants, and Lincoln's allows aliases). Either way is a > small hit, which is fine in most cases, but if the method is called possibly > thousands of times it amplifies accordingly and may become a bottleneck on > speed. > > You could have your cake and eat it too; check if the first argument is an > arrayref and do it it the original way, otherwise use rearrange(). > > BTW, this won't work: > > '-seqs' => (1, 3, 5..10,15), -toggle => "yes" > > The list flattens out into this: > > '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) > > So they don't pair up as you would expect; this is a silent bug, as > rearrange() will happily assign 1 to 'seqs' and toss the rest unless they > are asked for. With and odd number of elements you would see warnings > popping up. > > You'll have to use arrayrefs to get proper name-value pairings: > > '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) > > chris > > On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > >> Hi, Dave, >> >> No problem. I think your suggestion of using >> $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); >> is more reasonable. It is a more BioPerl way of defined parameters. >> >> And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); >> will also be recognized for the simplicity of use. >> >> Cheers, >> Jun Yin >> Ph.D. student in U.C.D. >> >> Bioinformatics Laboratory >> Conway Institute >> University College Dublin >> >> >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, June 18, 2010 10:38 AM >> To: Jun Yin >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Interface of the method >> >> Hi Jun, >> >> >>> In the BioPerl guide, >>> http://www.bioperl.org/wiki/Advanced_BioPerl >>> >>> They say that, Capital word should be used for methods returning >>> objects, >> >> You're absolutely right. My apologies ? thanks for pointing that out. >> >> >>> Thus an array reference >>> [1,3,5..10] seems better than a list (1,3,5..10), >>> the latter will be hard to recognize the other parameters. >> >> >>> >> Aaand, you're right here, too. >> >> Again, sorry about that. It was quite late last night when I was >> replying to your email, and I sure wasn't thinking clearly. >> >> So, please don't mind me, ( carry on, as you were!) and thanks again >> for your work on this. >> >> >> Dave >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> __________ Information from ESET Smart Security, version of virus > signature database 5099 (20100509) __________ >> >> The message was checked by ESET Smart Security. >> >> http://www.eset.com >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 18 14:03:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 13:03:32 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A2741.2080604@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> Message-ID: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > On 06/17/2010 03:12 PM, Chris Fields wrote: >> Emmanuel, >> >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >> >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >> >> http://github.com/cjfields/biome >> > > Hi Chris, > > Yep I've seen it already from one of your email on the Moose list :) > I can try plug my modules to your project, however my code might be > not as evolved as yours, so it could need some improvements and > tuning to run faster and better. > >> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >> >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >> > > Well I don't really know. Let me think about it (between github and > CPAN), I'll also need to read and understand carefully your biome > project. Moreover, as already said in my previous emails, I am not > very ease with Moose right now.... > > Anyway what I can do it to change my code to better fit with actual > implementation of BioPerl 1.6 and send it to the team for later > integration? > I can also send you my Moosified version to have a look? > > Let me know > > Regards > > Emmanuel If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. Let me know. chris From scott at scottcain.net Fri Jun 18 16:55:23 2010 From: scott at scottcain.net (Scott Cain) Date: Fri, 18 Jun 2010 16:55:23 -0400 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: Hi Jay, I was going to go, but I missed the abstract deadline by exactly one month (doh!) so I'm going to skip it. Scott On Friday, June 18, 2010, Jay Hannah wrote: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) > > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From jay at jays.net Fri Jun 18 15:29:32 2010 From: jay at jays.net (Jay Hannah) Date: Fri, 18 Jun 2010 14:29:32 -0500 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4B7EE88D.1020406@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> Message-ID: <4C1BC91C.8070609@jays.net> On 2/19/2010 1:37 PM, Jay Hannah wrote: > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) Oh dear. Am I the only attendee? Scott, George: I heard a rumor you'll be at YAPC. True? Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From arthur11985 at hotmail.com Fri Jun 18 01:07:19 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Fri, 18 Jun 2010 05:07:19 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> , <4C1AE9AE.5030807@gmail.com> Message-ID: Dear All I am using bio-linux, I installed BioPerl-run-1.6.1, and installed through cpan entirely. During installation, where ever a selection is required, I just followed with default setting which is just typing "enter". After that, I tried to call the module by "use Bio::Factory::EMBOSS;" with the script that I forwarded earlier and the terminal echoes "cannot locate Bio/Factory/EMBOSS.pm". Yours sincerely Arthur _________________________________________________________________ Feeling the financial pinch? Check on MSN NZ Money for a hand http://money.msn.co.nz From julia.davison83 at googlemail.com Fri Jun 18 07:22:04 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:22:04 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> Message-ID: <28924983.post@talk.nabble.com> >Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be >located in that "long directory list" for Perl to find it. The files would initially go to my user directory or my downloads (I can't remember which install version did which). When this didn't work I tried moving them to my perl folder, and to applications. There was an install text file. I could try using the directory list in require module? >Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: Have tried both. :-( It *seemed* to be Build that had the most trouble... Thanks! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28924983.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From julia.davison83 at googlemail.com Fri Jun 18 07:25:35 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:25:35 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> References: <28912041.post@talk.nabble.com> <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Message-ID: <28925011.post@talk.nabble.com> sorry - is this in the expat library section of cpan? I've been through all those install methods, and nothing seems to change the problem. thanks. Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28925011.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From rikusia at gmail.com Fri Jun 18 14:05:02 2010 From: rikusia at gmail.com (Rikusia) Date: Fri, 18 Jun 2010 11:05:02 -0700 (PDT) Subject: [Bioperl-l] Finding homologous (fasta files) via blast Message-ID: <28929168.post@talk.nabble.com> Hi everybody. I guess you won't be able to help me, but lets give it a try. I have to write a code for university assignment. I have to find homologous of given sequence with bioperl via blast. I'm not very good at coding and i really appreciate your help. Maybe you can give me few hints? Or you have code already? I'd be thankfull you forever. -- View this message in context: http://old.nabble.com/Finding-homologous-%28fasta-files%29-via-blast-tp28929168p28929168.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From hartzell at alerce.com Fri Jun 18 23:53:55 2010 From: hartzell at alerce.com (George Hartzell) Date: Fri, 18 Jun 2010 20:53:55 -0700 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: <19484.16211.139152.780741@gargle.gargle.HOWL> Jay Hannah writes: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > > > I'm looking forward to another hackathon. :) > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? I'll be there. Arriving Sunday PM. g. From rikusia at gmail.com Sat Jun 19 05:20:58 2010 From: rikusia at gmail.com (Rikusia) Date: Sat, 19 Jun 2010 02:20:58 -0700 (PDT) Subject: [Bioperl-l] NetBlast path. Not found. Message-ID: <28933539.post@talk.nabble.com> I have code like this: #!/usr/bin/perl -w use strict; use warnings; use Bio::SearchIO; my $netblast_dir = $ENV{USERPROFILE} . "\\Desktop\\netblast"; my $blast_report; chdir ($netblast_dir) or die; system ("blastcl3 -p blastn -d nr -i in.fasta -o out.blast"); $blast_report = new Bio::SearchIO ('-format' => 'blast', '-file' => 'out.blast'); while ( my $result = $blast_report->next_result ) { my $hit_num = 0; while( my $hit = $result->next_hit ) { $hit_num++; while( my $hsp = $hit->next_hsp ) { my $hsp_num++; my $hitName = $hit->name; my $percent_id = sprintf ("%.2f", $hsp->percent_identity); my $hspLength = $hsp->hsp_length; my $hspStart = $hsp->start('hit'); my $hspEnd = $hsp->end('hit'); my $numID = $hsp->num_identical; my $numGaps = $hsp->gaps; print "Hit number: $hit_num, hsp number: $hsp_num\n\t$hitName\n" . "\t\tPercent ID: $percent_id\n" . "\t\tLength: $hspLength\n" . "\t\tRange: $hspStart - $hspEnd\n" . "\t\tIdentical residues: $numID\n" . "\t\tGaps: $numGaps\n\n"; } } } print "Done.\n"; I'm using netblast, but still Path to blastall cannot be found and changing windows enviroment variables is not helping. Do you have any ideas how to fix it? -- View this message in context: http://old.nabble.com/NetBlast-path.-Not-found.-tp28933539p28933539.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From awitney at sgul.ac.uk Sat Jun 19 09:38:12 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Sat, 19 Jun 2010 14:38:12 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28924983.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> <28924983.post@talk.nabble.com> Message-ID: <3B84D6D2-44C7-4917-9A2B-C2407FDB8C72@sgul.ac.uk> On 18 Jun 2010, at 12:22, perlcurl wrote: > > > >> Where did you put the files once you downloaded them? Did you run an > install? Bio/Perl.pm needs to be >located in that "long directory list" for > Perl to find it. > > The files would initially go to my user directory or my downloads (I can't > remember which install version did which). When this didn't work I tried > moving them to my perl folder, and to applications. > There was an install text file. > I could try using the directory list in require module? > > >> Also you could try just using the standard Unix methods (CPAN or Build.pl) > of install, see here for details: > Have tried both. :-( It *seemed* to be Build that had the most trouble... ah so you haven't managed to build Bioperl successfully yet? can you give more details of what you have tried and what exactly failed adam From jay at jays.net Mon Jun 21 10:28:22 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 21 Jun 2010 10:28:22 -0400 Subject: [Bioperl-l] bioperl.org is down? Message-ID: s$ telnet bioperl.org 80 Trying 208.94.50.58... telnet: Unable to connect to remote host: Connection refused From s.denaxas at gmail.com Tue Jun 22 03:00:31 2010 From: s.denaxas at gmail.com (Spiros Denaxas) Date: Tue, 22 Jun 2010 08:00:31 +0100 Subject: [Bioperl-l] bioperl.org is down? In-Reply-To: References: Message-ID: Hm, works fine for me here. fruit:$ telnet bioperl.org 80 Trying 208.94.50.58... Connected to bioperl.org. Escape character is '^]'. GET / [...] On Mon, Jun 21, 2010 at 3:28 PM, Jay Hannah wrote: > s$ telnet bioperl.org 80 > Trying 208.94.50.58... > telnet: Unable to connect to remote host: Connection refused > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From vecchi.b at gmail.com Wed Jun 23 08:04:48 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 09:04:48 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: Hi, BioPerl is using Array::Compare which, as of?2009-08-09, depends on Moose. This means that Moose has been a dependency (albeit indirect) for almost a year now. Just thought I should point that out! Cheers, Bruno. 2010/6/18 Chris Fields > > On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > > > On 06/17/2010 03:12 PM, Chris Fields wrote: > >> Emmanuel, > >> > >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. ?But you have two possible options: > >> > >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > >> > >> http://github.com/cjfields/biome > >> > > > > Hi Chris, > > > > Yep I've seen it already from one of your email on the Moose list :) > > I can try plug my modules to your project, however my code might be > > not as evolved as yours, so it could need some improvements and > > tuning to run faster and better. > > > >> This will eventually move into the bioperl github account, and is probably a better fit. ?Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > >> > >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. ?That frees you up to do whatever you want with the code. > >> > > > > Well I don't really know. Let me think about it (between github and > > CPAN), I'll also need to read and understand carefully your biome > > project. Moreover, as already said in my previous emails, I am not > > very ease with Moose right now.... > > > > Anyway what I can do it to change my code to better fit with actual > > implementation of BioPerl 1.6 and send it to the team for later > > integration? > > I can also send you my Moosified version to have a look? > > > > Let me know > > > > Regards > > > > Emmanuel > > If the code works, wouldn't be much work to get it into Biome. ?Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. ?Tests and such are pretty straightforward. ?If needed you can wrap BioPerl objects. > > Let me know. > > chris > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 23 10:16:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 23 Jun 2010 09:16:26 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Bruno, Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). Our dependency load is already too high as it is. I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). Stevan Little himself posted on this last year: http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. Moose may be part of the answer, and could act as a viable transition to perl 6. I have already initiated that effort with biome, which anyone is more than welcome to participate in. Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). chris On Jun 23, 2010, at 7:04 AM, Bruno Vecchi wrote: > Hi, > > BioPerl is using Array::Compare which, as of 2009-08-09, depends on > Moose. This means that Moose has been a dependency (albeit indirect) > for almost a year now. Just thought I should point that out! > > Cheers, > > Bruno. > > 2010/6/18 Chris Fields >> >> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: >> >>> On 06/17/2010 03:12 PM, Chris Fields wrote: >>>> Emmanuel, >>>> >>>> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >>>> >>>> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >>>> >>>> http://github.com/cjfields/biome >>>> >>> >>> Hi Chris, >>> >>> Yep I've seen it already from one of your email on the Moose list :) >>> I can try plug my modules to your project, however my code might be >>> not as evolved as yours, so it could need some improvements and >>> tuning to run faster and better. >>> >>>> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >>>> >>>> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >>>> >>> >>> Well I don't really know. Let me think about it (between github and >>> CPAN), I'll also need to read and understand carefully your biome >>> project. Moreover, as already said in my previous emails, I am not >>> very ease with Moose right now.... >>> >>> Anyway what I can do it to change my code to better fit with actual >>> implementation of BioPerl 1.6 and send it to the team for later >>> integration? >>> I can also send you my Moosified version to have a look? >>> >>> Let me know >>> >>> Regards >>> >>> Emmanuel >> >> If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. >> >> Let me know. >> >> chris >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l From vecchi.b at gmail.com Wed Jun 23 10:48:43 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 11:48:43 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Message-ID: Chris, > Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. ?Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. Good catch, hadn't considered it could be a soft dependency. I stand corrected, sorry about the confusion. :) > I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). ?Our dependency load is already too high as it is. ?I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). ?Stevan Little himself posted on this last year: > > http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html > > Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). ?That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. ?Moose may be part of the answer, and could act as a viable transition to perl 6. ?I have already initiated that effort with biome, which anyone is more than welcome to participate in. Oh, I agree completely. I wasn't making any judgement call in my previous message; just thought I should point that Moose was already a dependency that had slipped in, probably without people noticing since Array::Compare didn't originally depend on Moose. > Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. ?I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). Also agree; in fact, I thought about this myself a year or so ago when I wrote Bio::Protease. I initially considered proposing it for inclusion here, but ended up releasing it as a standalone module to the CPAN. Partly because it was factored out of a project that had Moose all over it, but also because there really weren't any compelling reasons to have it bundled with BioPerl: it doesn't depend on it, and it would have added more unwanted bloat to BioPerl. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. Cheers, Bruno. From abhishek.vit at gmail.com Thu Jun 24 10:20:22 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 10:20:22 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function Message-ID: Hi All I may be hitting a problem which probably hints at my grip of the language. I am trying to store Bio::SeqIO object in a hash. I have creates couple of Bio::SeqIO objects in a method and storing them as a hash reference. The goal is to use them in another subroutine for writing out data to each file. The script is trying to bin data into different files. Any idea how I could achieve creating file handles thru "Bio::SeqIO" object in one routine and pass them to another for writing. Thanks! -Abhi foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $indexes->{$lane}->{$bin}->{'file_handle'}=$out; } } From wkretzsch at gmail.com Thu Jun 24 11:24:34 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 11:24:34 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi, My understanding is that you are using a SeqIO object in order to create correctly parsed output files. In that case for each SeqIO object, open it like this: for (0..9){ $file = "my_file_$_"; push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); } simply make $file correspond to the file (or bin) you want to put your data into. then pass @outseqIOs to your other subroutine and once you've created a seq object, write it to the bin you want it to go to (in this case file number "7"): $outseqIOs[7]->write_seq($seq); I haven't tested the code, but that's the kind of thing I think you're looking for. For more info, look at the howto: http://www.bioperl.org/wiki/HOWTO:SeqIO Warren On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap wrote: > Hi All > > I may be hitting a problem which probably hints at my grip of the language. > I am trying to store Bio::SeqIO object in a hash. I have creates couple of > Bio::SeqIO objects in a method and storing them as a hash reference. The > goal is to use them in another subroutine for writing out data to each file. > The script is trying to bin data into different files. > > > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" object > in one routine and pass them to another for writing. > > > Thanks! > -Abhi > > foreach my $bin (keys %{ $indexes->{$lane} }) > ?{ > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > ?my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > ?} > } > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From abhishek.vit at gmail.com Thu Jun 24 12:19:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:19:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Warren Thanks for your quick reply. I am doing something very close to what you have suggested but I see errors which might be due to some silly mistake I am making. The difference is instead of array I am using a hash to help me extract file names by key value later. I am writing data like this. my $file_handle = $bins{$bin_name}; $file_handle->write_seq($data); Gives me an error Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. -Abhi On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar wrote: > Hi, > My understanding is that you are using a SeqIO object in order to > create correctly parsed output files. > > In that case for each SeqIO object, open it like this: > > for (0..9){ > $file = "my_file_$_"; > push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); > } > > simply make $file correspond to the file (or bin) you want to put your > data into. > > then pass @outseqIOs to your other subroutine and once you've created > a seq object, write it to the bin you want it to go to (in this case > file number "7"): > > $outseqIOs[7]->write_seq($seq); > > I haven't tested the code, but that's the kind of thing I think you're > looking for. For more info, look at the howto: > http://www.bioperl.org/wiki/HOWTO:SeqIO > > Warren > > On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > wrote: > > Hi All > > > > I may be hitting a problem which probably hints at my grip of the > language. > > I am trying to store Bio::SeqIO object in a hash. I have creates couple > of > > Bio::SeqIO objects in a method and storing them as a hash reference. The > > goal is to use them in another subroutine for writing out data to each > file. > > The script is trying to bin data into different files. > > > > > > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > object > > in one routine and pass them to another for writing. > > > > > > Thanks! > > -Abhi > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > } > > } > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > From wkretzsch at gmail.com Thu Jun 24 12:22:32 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 12:22:32 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Where are you getting the filehandles from? That is, How are you opening them? Can you show me the code? Warren On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap wrote: > Dear Warren > Thanks for your quick reply. ?I am doing something very close to what you > have suggested but I see errors which might be due to some silly mistake I > am making. The difference is instead of array I am using a hash to help me > extract file names by key value later. > I am writing data like this. > my $file_handle = $bins{$bin_name}; > ?$file_handle->write_seq($data); > Gives me an error > Can't call method "write_seq" on an undefined value at > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > 139, line 5. > -Abhi > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > wrote: >> >> Hi, >> My understanding is that you are using a SeqIO object in order to >> create correctly parsed output files. >> >> In that case for each SeqIO object, open it like this: >> >> for (0..9){ >> $file = "my_file_$_"; >> push @outseqIOs, Bio::SeqIO->new(-file ? => ">$file", -format => $format >> ); >> } >> >> simply make $file correspond to the file (or bin) you want to put your >> data into. >> >> then pass @outseqIOs to your other subroutine and once you've created >> a seq object, write it to the bin you want it to go to (in this case >> file number "7"): >> >> $outseqIOs[7]->write_seq($seq); >> >> I haven't tested the code, but that's the kind of thing I think you're >> looking for. For more info, look at the howto: >> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >> Warren >> >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> wrote: >> > Hi All >> > >> > I may be hitting a problem which probably hints at my grip of the >> > language. >> > I am trying to store Bio::SeqIO object in a hash. I have creates couple >> > of >> > Bio::SeqIO objects in a method and storing them as a hash reference. The >> > goal is to use them in another subroutine for writing out data to each >> > file. >> > The script is trying to bin data into different files. >> > >> > >> > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" >> > object >> > in one routine and pass them to another for writing. >> > >> > >> > Thanks! >> > -Abhi >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > ?{ >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > ?my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> > ?} >> > } >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > From abhishek.vit at gmail.com Thu Jun 24 12:26:02 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:26:02 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Sure. Here is the full subroutine where I am opening the file handle and storing them Thanks for your help, -A sub createBins { my $SUB ='createBins'; my $PWD = `pwd`; my $outpath = shift @_; my $lane = shift @_ ; foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $bins{$bin}=$out; } } On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar wrote: > Where are you getting the filehandles from? That is, How are you > opening them? Can you show me the code? > > Warren > > On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > wrote: > > Dear Warren > > Thanks for your quick reply. I am doing something very close to what you > > have suggested but I see errors which might be due to some silly mistake > I > > am making. The difference is instead of array I am using a hash to help > me > > extract file names by key value later. > > I am writing data like this. > > my $file_handle = $bins{$bin_name}; > > $file_handle->write_seq($data); > > Gives me an error > > Can't call method "write_seq" on an undefined value at > > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > > 139, line 5. > > -Abhi > > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > wrote: > >> > >> Hi, > >> My understanding is that you are using a SeqIO object in order to > >> create correctly parsed output files. > >> > >> In that case for each SeqIO object, open it like this: > >> > >> for (0..9){ > >> $file = "my_file_$_"; > >> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format > >> ); > >> } > >> > >> simply make $file correspond to the file (or bin) you want to put your > >> data into. > >> > >> then pass @outseqIOs to your other subroutine and once you've created > >> a seq object, write it to the bin you want it to go to (in this case > >> file number "7"): > >> > >> $outseqIOs[7]->write_seq($seq); > >> > >> I haven't tested the code, but that's the kind of thing I think you're > >> looking for. For more info, look at the howto: > >> http://www.bioperl.org/wiki/HOWTO:SeqIO > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >> wrote: > >> > Hi All > >> > > >> > I may be hitting a problem which probably hints at my grip of the > >> > language. > >> > I am trying to store Bio::SeqIO object in a hash. I have creates > couple > >> > of > >> > Bio::SeqIO objects in a method and storing them as a hash reference. > The > >> > goal is to use them in another subroutine for writing out data to each > >> > file. > >> > The script is trying to bin data into different files. > >> > > >> > > >> > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >> > object > >> > in one routine and pass them to another for writing. > >> > > >> > > >> > Thanks! > >> > -Abhi > >> > > >> > foreach my $bin (keys %{ $indexes->{$lane} }) > >> > { > >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >> > my $path="$outpath".'/'."$sample_name"; > >> > mkpath( $path, { verbose => 1, mode => 0711 }); > >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >> > ">$outpath/$sample_name/$fastQFile"); > >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >> > } > >> > } > >> > _______________________________________________ > >> > Bioperl-l mailing list > >> > Bioperl-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > > > > > From cjfields at illinois.edu Thu Jun 24 12:52:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 11:52:48 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Are you sure you haven't hit the max limit for open filehandles for your OS? Attempting to open a filehandle when you exceed this limit simply returns undef, which might explain the error. On my Mac: cjfields4:~ cjfields$ ulimit -n 256 On my ubuntu box: cjfields at pyrimidine:~$ ulimit -n 1024 I think Windows used to be much less, not sure now. You might not be able to reset this on some systems. chris On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > Sure. Here is the full subroutine where I am opening the file handle and > storing them > > Thanks for your help, > -A > > sub createBins { > my $SUB ='createBins'; > my $PWD = `pwd`; > my $outpath = shift @_; > my $lane = shift @_ ; > > foreach my $bin (keys %{ $indexes->{$lane} }) > { > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $bins{$bin}=$out; > } > } > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar > wrote: > >> Where are you getting the filehandles from? That is, How are you >> opening them? Can you show me the code? >> >> Warren >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> wrote: >>> Dear Warren >>> Thanks for your quick reply. I am doing something very close to what you >>> have suggested but I see errors which might be due to some silly mistake >> I >>> am making. The difference is instead of array I am using a hash to help >> me >>> extract file names by key value later. >>> I am writing data like this. >>> my $file_handle = $bins{$bin_name}; >>> $file_handle->write_seq($data); >>> Gives me an error >>> Can't call method "write_seq" on an undefined value at >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line >>> 139, line 5. >>> -Abhi >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>> wrote: >>>> >>>> Hi, >>>> My understanding is that you are using a SeqIO object in order to >>>> create correctly parsed output files. >>>> >>>> In that case for each SeqIO object, open it like this: >>>> >>>> for (0..9){ >>>> $file = "my_file_$_"; >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format >>>> ); >>>> } >>>> >>>> simply make $file correspond to the file (or bin) you want to put your >>>> data into. >>>> >>>> then pass @outseqIOs to your other subroutine and once you've created >>>> a seq object, write it to the bin you want it to go to (in this case >>>> file number "7"): >>>> >>>> $outseqIOs[7]->write_seq($seq); >>>> >>>> I haven't tested the code, but that's the kind of thing I think you're >>>> looking for. For more info, look at the howto: >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>> >>>> Warren >>>> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>> wrote: >>>>> Hi All >>>>> >>>>> I may be hitting a problem which probably hints at my grip of the >>>>> language. >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> couple >>>>> of >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> The >>>>> goal is to use them in another subroutine for writing out data to each >>>>> file. >>>>> The script is trying to bin data into different files. >>>>> >>>>> >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" >>>>> object >>>>> in one routine and pass them to another for writing. >>>>> >>>>> >>>>> Thanks! >>>>> -Abhi >>>>> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>> { >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>> my $path="$outpath".'/'."$sample_name"; >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>> ">$outpath/$sample_name/$fastQFile"); >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>> } >>>>> } >>>>> _______________________________________________ >>>>> Bioperl-l mailing list >>>>> Bioperl-l at lists.open-bio.org >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>> >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 12:55:58 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:55:58 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi Chris Thanks for joining this conversation. I dont think max limit of file handles is a problem. I am opening about 12 in this case. [apratap at grima]$ ulimit -n 4096 -A On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > Are you sure you haven't hit the max limit for open filehandles for your > OS? Attempting to open a filehandle when you exceed this limit simply > returns undef, which might explain the error. On my Mac: > > cjfields4:~ cjfields$ ulimit -n > 256 > > On my ubuntu box: > > cjfields at pyrimidine:~$ ulimit -n > 1024 > > I think Windows used to be much less, not sure now. You might not be able > to reset this on some systems. > > chris > > On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > > Sure. Here is the full subroutine where I am opening the file handle and > > storing them > > > > Thanks for your help, > > -A > > > > sub createBins { > > my $SUB ='createBins'; > > my $PWD = `pwd`; > > my $outpath = shift @_; > > my $lane = shift @_ ; > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $bins{$bin}=$out; > > } > > } > > > > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > wkretzsch at gmail.com > >> wrote: > > > >> Where are you getting the filehandles from? That is, How are you > >> opening them? Can you show me the code? > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >> wrote: > >>> Dear Warren > >>> Thanks for your quick reply. I am doing something very close to what > you > >>> have suggested but I see errors which might be due to some silly > mistake > >> I > >>> am making. The difference is instead of array I am using a hash to help > >> me > >>> extract file names by key value later. > >>> I am writing data like this. > >>> my $file_handle = $bins{$bin_name}; > >>> $file_handle->write_seq($data); > >>> Gives me an error > >>> Can't call method "write_seq" on an undefined value at > >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line > >>> 139, line 5. > >>> -Abhi > >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>> wrote: > >>>> > >>>> Hi, > >>>> My understanding is that you are using a SeqIO object in order to > >>>> create correctly parsed output files. > >>>> > >>>> In that case for each SeqIO object, open it like this: > >>>> > >>>> for (0..9){ > >>>> $file = "my_file_$_"; > >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > $format > >>>> ); > >>>> } > >>>> > >>>> simply make $file correspond to the file (or bin) you want to put your > >>>> data into. > >>>> > >>>> then pass @outseqIOs to your other subroutine and once you've created > >>>> a seq object, write it to the bin you want it to go to (in this case > >>>> file number "7"): > >>>> > >>>> $outseqIOs[7]->write_seq($seq); > >>>> > >>>> I haven't tested the code, but that's the kind of thing I think you're > >>>> looking for. For more info, look at the howto: > >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>> > >>>> Warren > >>>> > >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>> wrote: > >>>>> Hi All > >>>>> > >>>>> I may be hitting a problem which probably hints at my grip of the > >>>>> language. > >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >> couple > >>>>> of > >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >> The > >>>>> goal is to use them in another subroutine for writing out data to > each > >>>>> file. > >>>>> The script is trying to bin data into different files. > >>>>> > >>>>> > >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >>>>> object > >>>>> in one routine and pass them to another for writing. > >>>>> > >>>>> > >>>>> Thanks! > >>>>> -Abhi > >>>>> > >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>> { > >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>> my $path="$outpath".'/'."$sample_name"; > >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>> } > >>>>> } > >>>>> _______________________________________________ > >>>>> Bioperl-l mailing list > >>>>> Bioperl-l at lists.open-bio.org > >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>> > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 13:03:00 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 13:03:00 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: After a bit more error checking, I was able to resolve the previous error Resolved Error : Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. This happened due to null value returned by one of the hash. However I am hitting a new issue. New Error : Can't call method "isa" on unblessed reference at /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, line 49 -A On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > Hi Chris > > Thanks for joining this conversation. I dont think max limit of file > handles is a problem. I am opening about 12 in this case. > > [apratap at grima]$ ulimit -n > 4096 > > -A > > > On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> Are you sure you haven't hit the max limit for open filehandles for your >> OS? Attempting to open a filehandle when you exceed this limit simply >> returns undef, which might explain the error. On my Mac: >> >> cjfields4:~ cjfields$ ulimit -n >> 256 >> >> On my ubuntu box: >> >> cjfields at pyrimidine:~$ ulimit -n >> 1024 >> >> I think Windows used to be much less, not sure now. You might not be able >> to reset this on some systems. >> >> chris >> >> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >> >> > Sure. Here is the full subroutine where I am opening the file handle and >> > storing them >> > >> > Thanks for your help, >> > -A >> > >> > sub createBins { >> > my $SUB ='createBins'; >> > my $PWD = `pwd`; >> > my $outpath = shift @_; >> > my $lane = shift @_ ; >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > { >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $bins{$bin}=$out; >> > } >> > } >> > >> > >> > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >> wkretzsch at gmail.com >> >> wrote: >> > >> >> Where are you getting the filehandles from? That is, How are you >> >> opening them? Can you show me the code? >> >> >> >> Warren >> >> >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> >> wrote: >> >>> Dear Warren >> >>> Thanks for your quick reply. I am doing something very close to what >> you >> >>> have suggested but I see errors which might be due to some silly >> mistake >> >> I >> >>> am making. The difference is instead of array I am using a hash to >> help >> >> me >> >>> extract file names by key value later. >> >>> I am writing data like this. >> >>> my $file_handle = $bins{$bin_name}; >> >>> $file_handle->write_seq($data); >> >>> Gives me an error >> >>> Can't call method "write_seq" on an undefined value at >> >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >> line >> >>> 139, line 5. >> >>> -Abhi >> >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >> >>> wrote: >> >>>> >> >>>> Hi, >> >>>> My understanding is that you are using a SeqIO object in order to >> >>>> create correctly parsed output files. >> >>>> >> >>>> In that case for each SeqIO object, open it like this: >> >>>> >> >>>> for (0..9){ >> >>>> $file = "my_file_$_"; >> >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >> $format >> >>>> ); >> >>>> } >> >>>> >> >>>> simply make $file correspond to the file (or bin) you want to put >> your >> >>>> data into. >> >>>> >> >>>> then pass @outseqIOs to your other subroutine and once you've created >> >>>> a seq object, write it to the bin you want it to go to (in this case >> >>>> file number "7"): >> >>>> >> >>>> $outseqIOs[7]->write_seq($seq); >> >>>> >> >>>> I haven't tested the code, but that's the kind of thing I think >> you're >> >>>> looking for. For more info, look at the howto: >> >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >>>> >> >>>> Warren >> >>>> >> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> >>>> wrote: >> >>>>> Hi All >> >>>>> >> >>>>> I may be hitting a problem which probably hints at my grip of the >> >>>>> language. >> >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> >> couple >> >>>>> of >> >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> >> The >> >>>>> goal is to use them in another subroutine for writing out data to >> each >> >>>>> file. >> >>>>> The script is trying to bin data into different files. >> >>>>> >> >>>>> >> >>>>> Any idea how I could achieve creating file handles thru >> "Bio::SeqIO" >> >>>>> object >> >>>>> in one routine and pass them to another for writing. >> >>>>> >> >>>>> >> >>>>> Thanks! >> >>>>> -Abhi >> >>>>> >> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >> >>>>> { >> >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> >>>>> my $path="$outpath".'/'."$sample_name"; >> >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >> >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> >>>>> ">$outpath/$sample_name/$fastQFile"); >> >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> >>>>> } >> >>>>> } >> >>>>> _______________________________________________ >> >>>>> Bioperl-l mailing list >> >>>>> Bioperl-l at lists.open-bio.org >> >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >>>>> >> >>> >> >>> >> >> >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > From jay at jays.net Thu Jun 24 13:10:21 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 24 Jun 2010 13:10:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: On Jun 24, 2010, at 1:03 PM, Abhishek Pratap wrote: > However I am hitting a new issue. You might also seek help via IRC: http://bioperl.org/wiki/IRC (I have to get on a plane in 20 minutes, so the channel might be quiet.) I, for one, don't attempt support via email due to chronic 20-40 minute posting delays. Jay Hannah email defamation league http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From cjfields at illinois.edu Thu Jun 24 13:19:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 12:19:21 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. chris On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > After a bit more error checking, I was able to resolve the previous error > > Resolved Error : Can't call method "write_seq" on an undefined value > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line 139, line 5. > This happened due to null value returned by one of the hash. > > However I am hitting a new issue. > New Error : Can't call method "isa" on unblessed reference at > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > line 49 > > > -A > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > >> Hi Chris >> >> Thanks for joining this conversation. I dont think max limit of file >> handles is a problem. I am opening about 12 in this case. >> >> [apratap at grima]$ ulimit -n >> 4096 >> >> -A >> >> >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: >> >>> Are you sure you haven't hit the max limit for open filehandles for your >>> OS? Attempting to open a filehandle when you exceed this limit simply >>> returns undef, which might explain the error. On my Mac: >>> >>> cjfields4:~ cjfields$ ulimit -n >>> 256 >>> >>> On my ubuntu box: >>> >>> cjfields at pyrimidine:~$ ulimit -n >>> 1024 >>> >>> I think Windows used to be much less, not sure now. You might not be able >>> to reset this on some systems. >>> >>> chris >>> >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >>> >>>> Sure. Here is the full subroutine where I am opening the file handle and >>>> storing them >>>> >>>> Thanks for your help, >>>> -A >>>> >>>> sub createBins { >>>> my $SUB ='createBins'; >>>> my $PWD = `pwd`; >>>> my $outpath = shift @_; >>>> my $lane = shift @_ ; >>>> >>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>> { >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>> my $path="$outpath".'/'."$sample_name"; >>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>> ">$outpath/$sample_name/$fastQFile"); >>>> $bins{$bin}=$out; >>>> } >>>> } >>>> >>>> >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >>> wkretzsch at gmail.com >>>>> wrote: >>>> >>>>> Where are you getting the filehandles from? That is, How are you >>>>> opening them? Can you show me the code? >>>>> >>>>> Warren >>>>> >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >>>>> wrote: >>>>>> Dear Warren >>>>>> Thanks for your quick reply. I am doing something very close to what >>> you >>>>>> have suggested but I see errors which might be due to some silly >>> mistake >>>>> I >>>>>> am making. The difference is instead of array I am using a hash to >>> help >>>>> me >>>>>> extract file names by key value later. >>>>>> I am writing data like this. >>>>>> my $file_handle = $bins{$bin_name}; >>>>>> $file_handle->write_seq($data); >>>>>> Gives me an error >>>>>> Can't call method "write_seq" on an undefined value at >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >>> line >>>>>> 139, line 5. >>>>>> -Abhi >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>>>>> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> My understanding is that you are using a SeqIO object in order to >>>>>>> create correctly parsed output files. >>>>>>> >>>>>>> In that case for each SeqIO object, open it like this: >>>>>>> >>>>>>> for (0..9){ >>>>>>> $file = "my_file_$_"; >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >>> $format >>>>>>> ); >>>>>>> } >>>>>>> >>>>>>> simply make $file correspond to the file (or bin) you want to put >>> your >>>>>>> data into. >>>>>>> >>>>>>> then pass @outseqIOs to your other subroutine and once you've created >>>>>>> a seq object, write it to the bin you want it to go to (in this case >>>>>>> file number "7"): >>>>>>> >>>>>>> $outseqIOs[7]->write_seq($seq); >>>>>>> >>>>>>> I haven't tested the code, but that's the kind of thing I think >>> you're >>>>>>> looking for. For more info, look at the howto: >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>>>>> >>>>>>> Warren >>>>>>> >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>>>>> wrote: >>>>>>>> Hi All >>>>>>>> >>>>>>>> I may be hitting a problem which probably hints at my grip of the >>>>>>>> language. >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >>>>> couple >>>>>>>> of >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >>>>> The >>>>>>>> goal is to use them in another subroutine for writing out data to >>> each >>>>>>>> file. >>>>>>>> The script is trying to bin data into different files. >>>>>>>> >>>>>>>> >>>>>>>> Any idea how I could achieve creating file handles thru >>> "Bio::SeqIO" >>>>>>>> object >>>>>>>> in one routine and pass them to another for writing. >>>>>>>> >>>>>>>> >>>>>>>> Thanks! >>>>>>>> -Abhi >>>>>>>> >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>>>>> { >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>>>>> my $path="$outpath".'/'."$sample_name"; >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>>>>> ">$outpath/$sample_name/$fastQFile"); >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>>>>> } >>>>>>>> } >>>>>>>> _______________________________________________ >>>>>>>> Bioperl-l mailing list >>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>> >>>>>> >>>>>> >>>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 14:09:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:09:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Chris I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. Thanks! -Abhi On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line > 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for > your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be > able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to > what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From cjfields at illinois.edu Thu Jun 24 14:14:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:14:41 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> The best way to get that is by using next_seq(), not next_dataset. It will not be as fast, but should suffice. At the moment we don't have plans on supporting output for hash refs frm next_dataset until we can standardize upon a way for describing such data from various parsers. chris On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > Dear Chris > > I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. > > Thanks! > -Abhi > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've created > >>>>>>> a seq object, write it to the bin you want it to go to (in this case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 14:28:21 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:28:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: Thanks everyone for your input. I have the script working. Chris : Not sure what is the rationale, write_seq and next_seq has different key names in the hash ref( eg . 'display_id' and '-id') . This could possibly cause conflicts in future development. Also just wondering why currently only Bio:SeqIO:Quality object works with write_seq. -Abhi On Thu, Jun 24, 2010 at 2:14 PM, Chris Fields wrote: > The best way to get that is by using next_seq(), not next_dataset. It will > not be as fast, but should suffice. > > At the moment we don't have plans on supporting output for hash refs frm > next_dataset until we can standardize upon a way for describing such data > from various parsers. > > chris > > On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > > > Dear Chris > > > > I am indeed passing hash ref via next_dataset. Any slick way to convert > the ref to Bio::Seq::Quality format. > > > > Thanks! > > -Abhi > > > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields > wrote: > > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > > > chris > > > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > > > After a bit more error checking, I was able to resolve the previous > error > > > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > > line 139, line 5. > > > This happened due to null value returned by one of the hash. > > > > > > However I am hitting a new issue. > > > New Error : Can't call method "isa" on unblessed reference at > > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pmline 126, > > > line 49 > > > > > > > > > -A > > > > > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > > > >> Hi Chris > > >> > > >> Thanks for joining this conversation. I dont think max limit of file > > >> handles is a problem. I am opening about 12 in this case. > > >> > > >> [apratap at grima]$ ulimit -n > > >> 4096 > > >> > > >> -A > > >> > > >> > > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > > >> > > >>> Are you sure you haven't hit the max limit for open filehandles for > your > > >>> OS? Attempting to open a filehandle when you exceed this limit > simply > > >>> returns undef, which might explain the error. On my Mac: > > >>> > > >>> cjfields4:~ cjfields$ ulimit -n > > >>> 256 > > >>> > > >>> On my ubuntu box: > > >>> > > >>> cjfields at pyrimidine:~$ ulimit -n > > >>> 1024 > > >>> > > >>> I think Windows used to be much less, not sure now. You might not be > able > > >>> to reset this on some systems. > > >>> > > >>> chris > > >>> > > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > >>> > > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > > >>>> storing them > > >>>> > > >>>> Thanks for your help, > > >>>> -A > > >>>> > > >>>> sub createBins { > > >>>> my $SUB ='createBins'; > > >>>> my $PWD = `pwd`; > > >>>> my $outpath = shift @_; > > >>>> my $lane = shift @_ ; > > >>>> > > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>> { > > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>> my $path="$outpath".'/'."$sample_name"; > > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > >>>> ">$outpath/$sample_name/$fastQFile"); > > >>>> $bins{$bin}=$out; > > >>>> } > > >>>> } > > >>>> > > >>>> > > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > > >>> wkretzsch at gmail.com > > >>>>> wrote: > > >>>> > > >>>>> Where are you getting the filehandles from? That is, How are you > > >>>>> opening them? Can you show me the code? > > >>>>> > > >>>>> Warren > > >>>>> > > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > > >>>>> wrote: > > >>>>>> Dear Warren > > >>>>>> Thanks for your quick reply. I am doing something very close to > what > > >>> you > > >>>>>> have suggested but I see errors which might be due to some silly > > >>> mistake > > >>>>> I > > >>>>>> am making. The difference is instead of array I am using a hash to > > >>> help > > >>>>> me > > >>>>>> extract file names by key value later. > > >>>>>> I am writing data like this. > > >>>>>> my $file_handle = $bins{$bin_name}; > > >>>>>> $file_handle->write_seq($data); > > >>>>>> Gives me an error > > >>>>>> Can't call method "write_seq" on an undefined value at > > >>>>>> > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > >>> line > > >>>>>> 139, line 5. > > >>>>>> -Abhi > > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > >>>>>> wrote: > > >>>>>>> > > >>>>>>> Hi, > > >>>>>>> My understanding is that you are using a SeqIO object in order to > > >>>>>>> create correctly parsed output files. > > >>>>>>> > > >>>>>>> In that case for each SeqIO object, open it like this: > > >>>>>>> > > >>>>>>> for (0..9){ > > >>>>>>> $file = "my_file_$_"; > > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > > >>> $format > > >>>>>>> ); > > >>>>>>> } > > >>>>>>> > > >>>>>>> simply make $file correspond to the file (or bin) you want to put > > >>> your > > >>>>>>> data into. > > >>>>>>> > > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > > >>>>>>> file number "7"): > > >>>>>>> > > >>>>>>> $outseqIOs[7]->write_seq($seq); > > >>>>>>> > > >>>>>>> I haven't tested the code, but that's the kind of thing I think > > >>> you're > > >>>>>>> looking for. For more info, look at the howto: > > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > > >>>>>>> > > >>>>>>> Warren > > >>>>>>> > > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > > >>>>>>> wrote: > > >>>>>>>> Hi All > > >>>>>>>> > > >>>>>>>> I may be hitting a problem which probably hints at my grip of > the > > >>>>>>>> language. > > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > > >>>>> couple > > >>>>>>>> of > > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > > >>>>> The > > >>>>>>>> goal is to use them in another subroutine for writing out data > to > > >>> each > > >>>>>>>> file. > > >>>>>>>> The script is trying to bin data into different files. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Any idea how I could achieve creating file handles thru > > >>> "Bio::SeqIO" > > >>>>>>>> object > > >>>>>>>> in one routine and pass them to another for writing. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Thanks! > > >>>>>>>> -Abhi > > >>>>>>>> > > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>>>>>> { > > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file > => > > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > >>>>>>>> } > > >>>>>>>> } > > >>>>>>>> _______________________________________________ > > >>>>>>>> Bioperl-l mailing list > > >>>>>>>> Bioperl-l at lists.open-bio.org > > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>>>>>>> > > >>>>>> > > >>>>>> > > >>>>> > > >>>> _______________________________________________ > > >>>> Bioperl-l mailing list > > >>>> Bioperl-l at lists.open-bio.org > > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>> > > >>> > > >> > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > > > From cjfields at illinois.edu Thu Jun 24 14:47:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:47:26 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: <678DF936-84D0-4305-B240-84B73264A25A@illinois.edu> On Jun 24, 2010, at 1:28 PM, Abhishek Pratap wrote: > Thanks everyone for your input. I have the script working. > > Chris : Not sure what is the rationale, write_seq and next_seq has different > key names in the hash ref( eg . 'display_id' and '-id') . This could > possibly cause conflicts in future development. The '-id' constructor argument (which is terribly non-specific) defaults to setting the display_id, as this is the most commonly used one. Frankly, if it were up to me I would either die/warn with the -id parameter ('Error: Use a more specific ID type; defaulting to display_id') and defer as is, but that breaks API at the moment. This behavior is also the default in the older FASTQ parser as well as others (FASTA I believe), so it is retained for consistency. > Also just wondering why > currently only Bio:SeqIO:Quality object works with write_seq. For FASTQ format, that would be the only one that would make sense (why output something with no quality information). Unless I'm missing something, that's a feature, not a bug. > -Abhi chris From cjfields at illinois.edu Fri Jun 25 12:44:31 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 11:44:31 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray Message-ID: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> All, We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. chris From cjfields at illinois.edu Fri Jun 25 14:38:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 13:38:24 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> An update to this: I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. chris On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > All, > > We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. > > I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 15:39:36 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 14:39:36 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> Message-ID: <10B48011-6C9E-419A-A3FE-18A7B688A264@illinois.edu> Marian's code has been moved into the github Bio-Microarray repo (we can rename that if needed). Bio::Expression modules have been moved into bioperl-microarray for the time being, though I would like to allow use of that namespace for others if needed. Bio::Expression and Bio::Microarray have been removed on a branch of bioperl-live, all tests pass, so it just needs merging. chris On Jun 25, 2010, at 1:38 PM, Chris Fields wrote: > An update to this: > > I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. > > If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. > > chris > > On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > >> All, >> >> We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. >> >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. >> >> If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 16:31:04 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 15:31:04 -0500 Subject: [Bioperl-l] version() vs seq_version() Message-ID: Looking at bug 3095: http://bugzilla.open-bio.org/show_bug.cgi?id=3095 As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? chris From hlapp at drycafe.net Sat Jun 26 20:32:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:32:46 -0700 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > I also suggest we eventually do the same for the PhyloNetwork > modules down the line, and that we steer users who want to submit > new publication-focused bioperl-reliant code into their own CPAN > distributions. That makes sense. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From hlapp at drycafe.net Sat Jun 26 20:36:17 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:36:17 -0700 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: References: Message-ID: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Versioning of a sequence database entry and of the sequence itself need not be the same thing. Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. -hilmar On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > Looking at bug 3095: > > http://bugzilla.open-bio.org/show_bug.cgi?id=3095 > > As indicated there seems to be some redundancy between > Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several > formats (asciitree, genbank, embl, bsml, etc) all call > seq_version(), whereas others use version() if at all. My guess is > the SV line from EMBL, but shouldn't using version() handle this? > > Just as an experiment, I actually got seq_version to delegate to > version() and all tests passed, so maybe this should just delegate > or alias? > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 26 21:26:10 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 26 Jun 2010 20:26:10 -0500 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> References: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Message-ID: <0F532CB7-9195-4226-B76C-3BC8767BA546@illinois.edu> I think, as long as this is clarified for the sake of documentation that would suffice. I'm hazarding a guess that Bio::Seq::version() would be the seq-specific one, whereas Bio::Seq::RichSeq::seq_version() is the seq record (e.g. database entry specific) one. chris On Jun 26, 2010, at 7:36 PM, Hilmar Lapp wrote: > Versioning of a sequence database entry and of the sequence itself need not be the same thing. > > Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. > > -hilmar > > On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > >> Looking at bug 3095: >> >> http://bugzilla.open-bio.org/show_bug.cgi?id=3095 >> >> As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? >> >> Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > From buiduyminh at gmail.com Mon Jun 28 09:15:14 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:15:14 -0400 Subject: [Bioperl-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language. From JSahl at som.umaryland.edu Mon Jun 28 10:04:06 2010 From: JSahl at som.umaryland.edu (Sahl, Jason) Date: Mon, 28 Jun 2010 10:04:06 -0400 Subject: [Bioperl-l] maf write Message-ID: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Hi. I'm trying to write out an alignment in the maf format and I get this error: ------------- EXCEPTION: Bio::Root::NotImplemented ------------- MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by package Bio::AlignIO::maf. This is not your fault - author of Bio::AlignIO::maf should be blamed! I'm using Perl 5.8.8. Anyone know if there are plans to implement write_aln for maf files in the near future? Or does anyone have an easy work around? thank you, Jason Sahl From jovel_juan at hotmail.com Mon Jun 28 13:19:23 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Mon, 28 Jun 2010 17:19:23 +0000 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hello Everybody! I generally use SearchIO to parse my blast reports. To extract hit name, I do: ... while (my $hsp = $hit->next_hsp){ ... my $hit_name = $hit -> name(); ... } It usually gives me something like: ref|NC_006884.1| How can I get ALL the information contained in the name line of that hit?, for example: >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome THANKS IN ADVANCE! JUAN _________________________________________________________________ Connect to the next generation of MSN Messenger? http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline From cjfields at illinois.edu Mon Jun 28 13:28:38 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 28 Jun 2010 12:28:38 -0500 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: <62E8D186-9EA5-4C08-AFBF-8316F5C1A78A@illinois.edu> $hit->description, I believe. chris On Jun 28, 2010, at 12:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, for example: > >> gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From shalabh.sharma7 at gmail.com Mon Jun 28 13:42:41 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Mon, 28 Jun 2010 13:42:41 -0400 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hey Juan, You need to use $hit->description; -Shalabh On Mon, Jun 28, 2010 at 1:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I > do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, > for example: > > >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From buiduyminh at gmail.com Tue Jun 29 09:58:09 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Tue, 29 Jun 2010 09:58:09 -0400 Subject: [Bioperl-l] Error when Using BLAT???? Message-ID: Hi everyone, I am writing an application that allows me to search through a database (yeast.nt*) *with a few queries (yeastquery.fasta). Here is the code: *use warnings;* *use Bio::Tools::Run::Alignment::Blat;* *use Bio::SeqIO;* *use Bio::DB::Fasta;* * * *my $seqio_object = Bio::SeqIO -> new (-file => 'C:/Users/MINH/Desktop/yeastquery.fasta', -format => 'fasta'); * * * *my $database = 'C:/Users/MINH/Desktop/yeast.nt';* *my $db = Bio::DB::Fasta->new($database); * * * *my $factory = Bio::Tools::Run::Alignment::Blat->new(); * * * *while (my $blat_object = $seqio_object -> next_seq) {** * * my $results = $factory -> run($blat_object,$db); * *}* BUT i got this error and don't know how to fix it. I am sorry, i am new to Perl and Bioperl. I am using window 7, Strawberry. *Replacement list is longer than search list at C:/strawberry/perl/site/lib/Bio/Range.pm line 251.* *Use of uninitialized value in concatenation (.) or string at C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm line 251, line 1.* *'-out' is not recognized as an internal or external command,* *operable program or batch file.* * * *------------- EXCEPTION: Bio::Root::Exception -------------* *MSG: Blat call ( -out=psl C:\Users\MINH\AppData\Local\Temp\BUiXTGzYC2 C:\Users\MINH\AppData\Local\Temp\yQK5pzgJ_z) crashed: 256 * * * *STACK: Error::throw* *STACK: Bio::Root::Root::throw C:/strawberry/perl/site/lib/Bio/Root/Root.pm:368* *STACK: Bio::Tools::Run::Alignment::Blat::_run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:261* *STACK: Bio::Tools::Run::Alignment::Blat::run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:178* *STACK: D:/eclipswp/bioperl/readfasta.pl:15* *-----------------------------------------------------------* Thank you for your help. From david.breimann at gmail.com Tue Jun 29 10:01:49 2010 From: david.breimann at gmail.com (David Breimann) Date: Tue, 29 Jun 2010 07:01:49 -0700 (PDT) Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome Message-ID: Hello, I have calculated some numeric score for each nucleotide in some genbank file.I would like to plot these scores against the genome. I'm quite new to bio perl so I have done some reading and experimenting with Bio::Graphics and followed the examples in the docs. However, I am not sure how can I easily plot this graph. Should I create a feature separately for each nucleotide? This does not seem to make snse. I thought Bio::Graphics::Glyph::xyplot might be relevant but coul not fully understand how to apply the example given to my setting. Thanks, David From biopython at maubp.freeserve.co.uk Tue Jun 29 10:51:55 2010 From: biopython at maubp.freeserve.co.uk (Peter) Date: Tue, 29 Jun 2010 15:51:55 +0100 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: On Tue, Jun 29, 2010 at 3:01 PM, David Breimann wrote: > Hello, > > I have calculated some numeric score for each nucleotide in some > genbank file.I would like to plot these scores against the genome. > As a quick solution you could use Artemis. Load the GenBank file, then menu Graph, Add User Plot, and pick a plot file. There are several supported formats but the simplest is one score per line (one line per nucleotide). You can use several scores per line (i.e. several scores per nucleotide) and then you get several different color lines on the plot. See: http://www.sanger.ac.uk/resources/software/artemis/ Peter From cjfields at illinois.edu Tue Jun 29 11:18:52 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 10:18:52 -0500 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> This is also possible via Bio::Graphics I believe, using some of the xyplot glyphs. Genome-wide information is probably better described using a compressed format like wig/bigwig (which BioPerl can also read via Lincoln's Bio::BigFile). chris On Jun 29, 2010, at 9:51 AM, Peter wrote: > On Tue, Jun 29, 2010 at 3:01 PM, David Breimann > wrote: >> Hello, >> >> I have calculated some numeric score for each nucleotide in some >> genbank file.I would like to plot these scores against the genome. >> > > As a quick solution you could use Artemis. Load the GenBank file, > then menu Graph, Add User Plot, and pick a plot file. There are > several supported formats but the simplest is one score per line > (one line per nucleotide). You can use several scores per line (i.e. > several scores per nucleotide) and then you get several different > color lines on the plot. See: > > http://www.sanger.ac.uk/resources/software/artemis/ > > Peter > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jovel_juan at hotmail.com Tue Jun 29 14:18:33 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Tue, 29 Jun 2010 18:18:33 +0000 Subject: [Bioperl-l] Parsing by organism In-Reply-To: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> References: , , <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hello Everybody! When using SearchIO to parse BLAST reports, is it possible to extract only hits belonging to an specific organism? If yes, how? Thanks in advance, JUAN _________________________________________________________________ Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy! http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us From shalabh.sharma7 at gmail.com Tue Jun 29 15:08:40 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Tue, 29 Jun 2010 15:08:40 -0400 Subject: [Bioperl-l] Parsing by organism In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hey Juan, When you parse your blast file and to get description you use $hit->description. That field contains information about the organism (in the square brackets , [....]), there you can have a condition for a particular organism. -Shalabh On Tue, Jun 29, 2010 at 2:18 PM, Juan Jovel wrote: > > Hello Everybody! > > When using SearchIO to parse BLAST reports, is it possible to extract only > hits belonging to an specific organism? If yes, how? > > Thanks in advance, > > JUAN > > _________________________________________________________________ > Invite your mail contacts to join your friends list with Windows Live > Spaces. It's easy! > > http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 29 17:06:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 30 Jun 2010 09:06:33 +1200 Subject: [Bioperl-l] SearchIO hit->description mod? In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32E731078A1@exchsth.agresearch.co.nz> Not sure if it's a useful tweak, but is it worth changing $hit->description to return an array? Just mentioned it as I notice when I'm parsing search results from Blasts against the NR database, the fasta header line consists of multiple values separated by a CTRL-A. $hit->accession will give you the accession of the first element in the header but $hit->description will give you the descriptions of all the rest of the elements. Probably not explaining it very well but perhaps both $hit->description and $hit->accession should return arrays or maybe use wantarray and return either a scalar or array? I don't know my way around the code well enough but it probably belongs further up the tree - Bio::Search::Hit? or even up in Bio::Seq? My hack for just getting back the first description, that matches up with the accession I hope, is: (split(chr(1),$hit->description))[0] --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 29 18:41:28 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 29 Jun 2010 17:41:28 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] Message-ID: Hi, http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] The above search returns 2124 entries. I try to use the following bioperl code to do the search. I got an error (see below). Could anybody let me know how I should modify the bioperl search code to get the same results? #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'esearch', -db => 'pubmed', -email => 'mymail at foo.bar', -term => 'anoxia[mh] and neoplasms[mh]', -retmode => 'xml', -retmax => 1000000, ); print $factory->get_retmax,"\n"; print $factory->get_Response->content; ############################ $ ./main.pl --------------------- WARNING --------------------- MSG: NCBI esearch Errors/Warnings: Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage [No items found.] --------------------------------------------------- 0 000 anoxia[mh] "anoxia"[MeSH Terms] +and+neoplasms[mh]No items found. -- Regards, Peng From cjfields at illinois.edu Tue Jun 29 19:15:15 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 18:15:15 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] In-Reply-To: References: Message-ID: <2864F3E9-8212-4DF9-A2DA-8AA1C2947F13@illinois.edu> Use uppercase with bools: 'anoxia[mh] AND neoplasms[mh]' This gives me 2124 hits. Note the URL you provided does that as well ...db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] chris On Jun 29, 2010, at 5:41 PM, Peng Yu wrote: > Hi, > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] > > The above search returns 2124 entries. I try to use the following > bioperl code to do the search. I got an error (see below). Could > anybody let me know how I should modify the bioperl search code to get > the same results? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'esearch', > -db => 'pubmed', > -email => 'mymail at foo.bar', > -term => 'anoxia[mh] and neoplasms[mh]', > -retmode => 'xml', > -retmax => 1000000, > ); > > print $factory->get_retmax,"\n"; > print $factory->get_Response->content; > > ############################ > > $ ./main.pl > > --------------------- WARNING --------------------- > MSG: NCBI esearch Errors/Warnings: > Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage > [No items found.] > --------------------------------------------------- > 0 > > 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd"> > 000 > anoxia[mh] > "anoxia"[MeSH Terms] > +and+neoplasms[mh]No > items found. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 30 13:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:35:51 -0500 Subject: [Bioperl-l] Seeking comments, Bio::Species memleak fix Message-ID: <1277919351.21543.66.camel@pyrimidine.igb.uiuc.edu> All, I have a branch in github (topic/species_proxy) that converts Bio::Species into a proxy class. This appears to fix a ton of problems introduced during the Tree/Taxonomy refactoring a few years back. Advantages: 1) No need for Scalar::Util::weaken within Bio::Species or Bio::Tree::Node. Cleanup methods are handled during instance destruction. 2) This paves the way a bit more for eventual deprecation of Bio::Species in 1.7. 3) Works with bioperl-db and BioSQL as is (passes on both my local Ubuntu 9.10 and Mac OS X 10.6), perl 5.10 and 5.12, should work with earlier perl versions. Disadvantages: 1) For every Bio::Species, we have a Bio::Taxon, a Bio::Tree::Tree, and a Bio::DB::Taxonomy (one instance more than the previous Bio::Species implementation). We can probably reduce that down considerably by creating the needed instances lazily. This fixes: bug 3017 use threads to get genbank file error bug 2594 Bio::Species memory leak and possibly others: bug 2773 Bio::Tree::Node gets destroyed even though it is still live If there are no comments, I'll merge this with the master branch in the next few days. ++++++++++++++++++++++++++++++++++++++++++ (NOTE: skip the next two paragraphs if you don't want to read nasty implementation details) Bio::Species had previously inherited from Bio::Taxon, but also required it to hold a Bio::Tree::Tree which contained a circular reference back to the Bio::Species object, thus requiring Scalar::Util::weaken. This has caused several hard-to-diagnose problems with premature garbage collection, including some issues with threads (bug 3017). The above proxy fix converts Bio::Species into a proxy class, which only inherits the interface (Bio::Tree::NodeI), and delegates to an internal Bio::Taxon and a Bio::Tree::Tree. Neither contained object has a reference back to the Bio::Species instance, thus the class can perform proper garbage collection. chris From cjfields at illinois.edu Wed Jun 30 13:47:39 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:47:39 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <64DE1483-417A-4B78-9914-93260D04E90A@illinois.edu> On Jun 26, 2010, at 7:32 PM, Hilmar Lapp wrote: > > On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > That makes sense. > > -hilmar Okay, I'll merge in the various branches. Marian, your code is currently in Bio-Microarray (can be renamed if needed). Thanks! chris From j.stiller at uq.edu.au Tue Jun 1 04:03:48 2010 From: j.stiller at uq.edu.au (Jiri Stiller) Date: Tue, 01 Jun 2010 18:03:48 +1000 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation Message-ID: <1275379428.24468.20.camel@lafs-746g12s> Hi, I am trying to process bam file using Bio::Assembly::IO. I attached test script and output. When I am retrieving contigs I get correct contig number and position but contig objects build from reads of different orientation don't contain any read sequences. Contigs built from the reads of the same orientations are fine. Your help/advice would be greatly appreciated. Cheers, -- Jiri Stiller Senior Bioinformatics Researcher Australian Centre for Plant Functional Genomics School of Land, Crop and Food Sciences University of Queensland Brisbane QLD 4072 j.stiller at uq.edu.au Phone: +61 (0)7 3346 7082 Mobile: +61 (0) 422 941 581 Fax: +61 (0)7 3365 1177 -------------- next part -------------- There are [178] contigs in this assembly CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/101291-101366] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102051-102152] There are [2] sequences in this contig [TTATCTGCCAAAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCAC] HWI-EAS406:6:2:876:1541#0 1 1 76 102051 102126 [CGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATTTTTGTTATAACTAAAAATGAAA] HWI-EAS406:7:66:970:866#0 1 1 76 102077 102152 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102259-102375] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103339-103414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103503-103593] There are [2] sequences in this contig [CTTTGAATAGTGTTCCTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATT] HWI-EAS406:7:36:1651:564#0 1 1 76 103503 103578 [CTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAG] HWI-EAS406:7:42:1490:1464#0 1 1 76 103518 103593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103651-103995] There are [3] sequences in this contig [CTTTTGGGTGGTCTTACTTGCTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCT] HWI-EAS406:7:51:519:1517#0 1 1 76 103651 103726 [GATCTGAGCATCTCAGAAGCTTATATGGGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCT] HWI-EAS406:7:52:1269:1884#0 1 1 76 103714 103789 [CTCTTGCTGAAGACGAAGCAATGTGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGT] HWI-EAS406:7:100:1623:1160#0 1 1 76 103788 103863 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104002-104077] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104144-104254] There are [2] sequences in this contig [TTATGTTTTTTCTCTGAAGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCT] HWI-EAS406:6:92:1645:1627#0 1 1 76 104144 104219 [GGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAATACTACTCCTCTTCCTTGCGTTAT] HWI-EAS406:6:46:436:1967#0 1 1 76 104179 104254 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104756-104831] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105167-105268] There are [2] sequences in this contig [ATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTA] HWI-EAS406:6:62:249:1175#0 1 1 76 105167 105242 [AGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGC] HWI-EAS406:6:36:814:2018#0 1 1 76 105193 105268 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105380-105470] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106271-106439] There are [3] sequences in this contig [CTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAG] HWI-EAS406:6:93:583:1229#0 1 1 76 106271 106346 [GGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAG] HWI-EAS406:5:17:1458:1611#0 1 1 76 106308 106383 [TCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCTGATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAA] HWI-EAS406:5:57:727:683#0 1 1 76 106364 106439 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106808-106883] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/125-317] There are [5] sequences in this contig [AGGCCGTAGGAGACGGCGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAG] HWI-EAS406:6:81:1026:1375#0 1 1 76 125 200 [CGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAG] HWI-EAS406:7:99:74:1159#0 1 1 76 171 246 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:27:509:1087#0 1 1 76 176 251 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:85:844:610#0 1 1 76 176 251 [GCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAATTTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAG] HWI-EAS406:5:37:558:195#0 1 1 76 242 317 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/1282-1357] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13485-13560] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13574-13703] There are [2] sequences in this contig [TCTTGTTCTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTAC] HWI-EAS406:5:74:70:987#0 1 1 76 13574 13649 [TGTTGATGGTGGCCGAGTCTACAAGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTT] HWI-EAS406:5:63:987:1854#0 1 1 76 13628 13703 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13787-13898] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/14531-14606] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/15027-15102] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/17829-17904] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/18191-18266] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19049-19176] There are [4] sequences in this contig [ACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAACGCAAAGATGACAAA] HWI-EAS406:6:47:476:1809#0 1 1 76 19049 19124 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:5:55:902:1256#0 1 1 76 19099 19174 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:6:24:1105:1536#0 1 1 76 19099 19174 [AAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGT] HWI-EAS406:5:81:1045:1991#0 1 1 76 19101 19176 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19226-19381] There are [2] sequences in this contig [TGAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGG] HWI-EAS406:7:6:1755:615#0 1 1 76 19226 19301 [GAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGA] HWI-EAS406:7:29:1005:1120#0 1 1 76 19227 19302 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19682-19757] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19938-20081] There are [3] sequences in this contig [TTTCTCGGCCAGAAGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGAC] HWI-EAS406:5:76:1534:574#0 1 1 76 19938 20013 [TATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCG] HWI-EAS406:5:88:260:1266#0 1 1 76 19965 20040 [CTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAA] HWI-EAS406:6:68:1763:137#0 1 1 76 20006 20081 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20107-20288] There are [6] sequences in this contig [ATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATA] HWI-EAS406:7:86:946:878#0 1 1 76 20107 20182 [TGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTG] HWI-EAS406:6:47:1422:395#0 1 1 76 20128 20203 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:59:1710:1444#0 1 1 76 20205 20280 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:91:386:241#0 1 1 76 20205 20280 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:279:1687#0 1 1 76 20213 20288 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:280:1685#0 1 1 76 20213 20288 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/2023-2098] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20305-20414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20417-20492] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20848-20960] There are [2] sequences in this contig [TCAATCGGGTAAGAGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTT] HWI-EAS406:5:9:1771:746#0 1 1 76 20848 20923 [GAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCTGTGTTAT] HWI-EAS406:7:27:1692:1515#0 1 1 76 20862 20937 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20969-21057] There are [2] sequences in this contig [CCATTCGTGCTTGGTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTG] HWI-EAS406:7:25:261:426#0 1 1 76 20969 21044 [GTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCT] HWI-EAS406:6:34:1342:1525#0 1 1 76 20982 21057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21180-21271] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21281-21356] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23183-23315] There are [2] sequences in this contig [CCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAGAAATTAGTCAGAAGATCC] HWI-EAS406:6:16:1118:1937#0 1 1 76 23183 23258 [GAAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTAAGGGT] HWI-EAS406:7:99:295:294#0 1 1 76 23240 23315 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23397-23534] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/24257-24332] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26533-26608] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26627-26702] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27548-27700] There are [3] sequences in this contig [TTTGCTCACATTGTCTATGGTTTTAGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATG] HWI-EAS406:7:70:7:790#0 1 1 76 27548 27623 [AGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGC] HWI-EAS406:5:66:1045:865#0 1 1 76 27572 27647 [CCATGCCGCCAATGCCTAGCGGCGGCTCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACC] HWI-EAS406:7:11:1363:966#0 1 1 76 27625 27700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27740-28037] There are [5] sequences in this contig [TCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCCAATGGCTCCATCTTCAAGTCCAATG] HWI-EAS406:6:80:586:416#0 1 1 76 27740 27815 [CCCAAGTCCAGAAACAGTCCCTGATATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGA] HWI-EAS406:6:4:735:317#0 1 1 76 27836 27911 [CTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGGCCTCTCCAGA] HWI-EAS406:6:24:834:1604#0 1 1 76 27865 27940 [GACCCATGCCACCGGCAATGGCCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTT] HWI-EAS406:6:7:1577:1072#0 1 1 76 27910 27985 [AAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCATTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAG] HWI-EAS406:5:13:1479:1512#0 1 1 76 27962 28037 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/28046-28217] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29612-29737] There are [4] sequences in this contig [CTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGG] HWI-EAS406:6:40:287:1418#0 1 1 76 29617 29692 [CCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTT] HWI-EAS406:7:68:469:1690#0 1 1 76 29622 29697 [GCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAG] HWI-EAS406:6:52:609:1614#0 1 1 76 29645 29720 [ACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAA] HWI-EAS406:6:8:1095:1720#0 1 1 76 29662 29737 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29830-29950] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30300-30448] There are [2] sequences in this contig [GCATACTACTAGTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATA] HWI-EAS406:5:56:245:827#0 1 1 76 30300 30375 [ATACTTGACGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTA] HWI-EAS406:6:54:518:1635#0 1 1 76 30373 30448 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30513-30588] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30599-30674] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31131-31206] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31241-31316] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31740-31815] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31979-32209] There are [6] sequences in this contig [GGTAAATCTATTGTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTT] HWI-EAS406:5:36:280:195#0 1 1 76 31979 32054 [TTATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGG] HWI-EAS406:6:43:1362:96#0 1 1 76 32034 32109 [TATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGT] HWI-EAS406:5:20:1502:651#0 1 1 76 32035 32110 [TTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTG] HWI-EAS406:7:23:1380:514#0 1 1 76 32053 32128 [TTTAGAGTGATTGAGTGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAA] HWI-EAS406:6:2:1437:1250#0 1 1 76 32116 32191 [TGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTCAGTCTCTTA] HWI-EAS406:5:12:820:1835#0 1 1 76 32134 32209 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3201-3322] There are [3] sequences in this contig [ACATGACCCGAACCGAATCCGATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATC] HWI-EAS406:7:4:730:1881#0 1 1 76 3201 3276 [GAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCG] HWI-EAS406:5:24:1242:1707#0 1 1 76 3226 3301 [ACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCGAGAAGACCCGAACCGAGAATT] HWI-EAS406:7:93:1120:174#0 1 1 76 3247 3322 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/32214-33432] There are [37] sequences in this contig [GCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGA] HWI-EAS406:5:80:1511:419#0 1 1 76 32230 32305 [GCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAG] HWI-EAS406:7:1:1373:1308#0 1 1 76 32233 32308 [GAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCC] HWI-EAS406:5:4:716:332#0 1 1 76 32283 32358 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:35:950:2013#0 1 1 76 32295 32370 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:80:372:1536#0 1 1 76 32295 32370 [AGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGT] HWI-EAS406:6:48:889:1456#0 1 1 76 32296 32371 [GCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAG] HWI-EAS406:6:55:699:904#0 1 1 76 32320 32395 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:6:43:758:1706#0 1 1 76 32331 32406 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:7:23:801:958#0 1 1 76 32331 32406 [GAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAA] HWI-EAS406:5:40:1659:524#0 1 1 76 32359 32434 [AGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGA] HWI-EAS406:7:75:276:530#0 1 1 76 32366 32441 [TATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTA] HWI-EAS406:5:69:687:818#0 1 1 76 32403 32478 [TTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAG] HWI-EAS406:7:82:811:1711#0 1 1 76 32407 32482 [GTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCA] HWI-EAS406:6:18:728:1283#0 1 1 76 32409 32484 [TAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAA] HWI-EAS406:7:39:575:1279#0 1 1 76 32446 32521 [ATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTACTTCAAAAGC] HWI-EAS406:5:77:554:699#0 1 1 76 32484 32559 [TCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAG] HWI-EAS406:6:38:322:1075#0 1 1 76 32552 32627 [AAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGG] HWI-EAS406:6:4:1708:1127#0 1 1 76 32554 32629 [AAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAA] HWI-EAS406:6:96:313:366#0 1 1 76 32581 32656 [AGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTT] HWI-EAS406:7:24:1099:862#0 1 1 76 32594 32669 [TGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTC] HWI-EAS406:7:93:648:748#0 1 1 76 32596 32671 [AGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCCAGACGAAGATA] HWI-EAS406:7:36:1426:1766#0 1 1 76 32626 32701 [TGCCAGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGA] HWI-EAS406:6:7:1217:1949#0 1 1 76 32687 32762 [CCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCG] HWI-EAS406:7:16:1331:1702#0 1 1 76 32703 32778 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:5:49:1610:706#0 1 1 76 32740 32815 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:7:34:213:833#0 1 1 76 32740 32815 [CATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCAT] HWI-EAS406:5:66:1471:637#0 1 1 76 32742 32817 [GCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTGGGTTAGACTGCGGTGATTATC] HWI-EAS406:7:38:1290:397#0 1 1 76 32776 32851 [CCGCCGTGTCCAGATAGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATG] HWI-EAS406:6:48:1074:1154#0 1 1 76 32956 33031 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:6:1:315:1531#0 1 1 76 32994 33069 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:7:92:232:127#0 1 1 76 32994 33069 [ATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTA] HWI-EAS406:6:65:1385:736#0 1 1 76 33061 33136 [TTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAG] HWI-EAS406:7:64:152:1162#0 1 1 76 33091 33166 [GTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGCGCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGC] HWI-EAS406:6:47:1344:2015#0 1 1 76 33142 33217 [TTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAGACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCC] HWI-EAS406:5:53:181:602#0 1 1 76 33286 33361 [CAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTT] HWI-EAS406:5:82:1052:1943#0 1 1 76 33337 33412 [TGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTG] HWI-EAS406:7:45:1464:1655#0 1 1 76 33357 33432 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33440-33860] There are [12] sequences in this contig [AACAAAGGTACATGTATAAATGTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATT] HWI-EAS406:7:88:1428:1042#0 1 1 76 33440 33515 [GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCT] HWI-EAS406:7:3:1161:1283#0 1 1 76 33461 33536 [AGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGT] HWI-EAS406:7:7:1669:1770#0 1 1 76 33465 33540 [AGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAAC] HWI-EAS406:5:9:203:511#0 1 1 76 33471 33546 [AACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAACTATTGGTGAGCAAATT] HWI-EAS406:6:36:660:812#0 1 1 76 33487 33562 [TTGATGAGGAGCGAGAGTATGACCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAA] HWI-EAS406:7:94:1100:1480#0 1 1 76 33579 33654 [GAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGA] HWI-EAS406:6:38:327:576#0 1 1 76 33699 33774 [GGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATT] HWI-EAS406:6:64:1457:110#0 1 1 76 33701 33776 [GTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGA] HWI-EAS406:7:70:734:1923#0 1 1 76 33704 33779 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:5:38:1327:1329#0 1 1 76 33716 33791 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:7:58:1187:138#0 1 1 76 33716 33791 [GAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTG] HWI-EAS406:7:98:1611:696#0 1 1 76 33718 33793 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3373-3533] There are [2] sequences in this contig [CACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTT] HWI-EAS406:7:63:789:161#0 1 1 76 3373 3448 [CGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCA] HWI-EAS406:7:50:888:1103#0 1 1 76 3408 3483 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33872-34074] There are [5] sequences in this contig [AGCTCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAA] HWI-EAS406:6:61:1059:811#0 1 1 76 33872 33947 [TCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT] HWI-EAS406:7:37:209:1471#0 1 1 76 33875 33950 [AGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTTCTA] HWI-EAS406:7:51:467:1510#0 1 1 76 33878 33953 [CAGGCTAACTTCTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGAT] HWI-EAS406:6:23:1431:966#0 1 1 76 33940 34015 [GACAGTGGGACAATGATACATATGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGA] HWI-EAS406:6:37:467:1855#0 1 1 76 33999 34074 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/339-458] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34368-34443] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34773-34850] There are [2] sequences in this contig [TCTGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTA] HWI-EAS406:7:42:1652:1481#0 1 1 76 34773 34848 [TGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGA] HWI-EAS406:6:57:1235:1165#0 1 1 76 34775 34850 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/35200-35275] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3595-3703] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3722-3816] There are [2] sequences in this contig [AGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTG] HWI-EAS406:5:40:1484:49#0 1 1 76 3722 3797 [GTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTGGTCTGATACAATTTGGGCT] HWI-EAS406:6:54:632:1253#0 1 1 76 3741 3816 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38041-38163] There are [2] sequences in this contig [AAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGACAATATTGCTACCCACGGCTTAATAAAAGTTGCGTGT] HWI-EAS406:7:59:595:1702#0 1 1 76 38041 38116 [CTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGGTCTTAGACAAAGA] HWI-EAS406:6:45:1385:450#0 1 1 76 38088 38163 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38179-38348] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3933-4035] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/40492-40567] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/42571-42646] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43000-43120] There are [2] sequences in this contig [GCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGCATCCAGAACCCACGACAACTAATACTAGCCAA] HWI-EAS406:6:48:1107:1243#0 1 1 76 43007 43082 [ACCTGCATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG] HWI-EAS406:6:16:215:1613#0 1 1 76 43045 43120 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43213-43322] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43346-43459] There are [3] sequences in this contig [TCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAA] HWI-EAS406:5:61:1069:1184#0 1 1 76 43346 43421 [CCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATC] HWI-EAS406:7:30:1025:1208#0 1 1 76 43378 43453 [CGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTC] HWI-EAS406:6:91:366:235#0 1 1 76 43384 43459 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43804-43879] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43994-44071] There are [2] sequences in this contig [AGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGG] HWI-EAS406:5:67:352:1473#0 1 1 76 43994 44069 [GGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAG] HWI-EAS406:5:11:796:675#0 1 1 76 43996 44071 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44197-44354] There are [4] sequences in this contig [TAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGT] HWI-EAS406:7:78:1706:1488#0 1 1 76 44197 44272 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:5:40:1010:733#0 1 1 76 44238 44313 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:6:6:1380:1161#0 1 1 76 44238 44313 [GATTGCCTTGTGAGTCCCAATATGATCCTCGATTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGT] HWI-EAS406:6:39:1311:1899#0 1 1 76 44279 44354 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44386-44669] There are [2] sequences in this contig [GGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCTAGAAGTAAAAA] HWI-EAS406:5:8:579:1223#0 1 1 76 44386 44461 [CCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCATCACCCGACACATTA] HWI-EAS406:6:33:276:2024#0 1 1 76 44529 44604 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44736-44811] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/474-549] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48444-48600] There are [2] sequences in this contig [GTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGCCAAGCTAAG] HWI-EAS406:6:36:565:711#0 1 1 76 48444 48519 [TATAGACTGCCAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTT] HWI-EAS406:7:56:1561:265#0 1 1 76 48501 48576 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48653-49079] There are [10] sequences in this contig [ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAA] HWI-EAS406:5:10:337:1092#0 1 1 76 48721 48796 [AAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAA] HWI-EAS406:5:11:1385:2002#0 1 1 76 48757 48832 [TGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAA] HWI-EAS406:6:62:259:1312#0 1 1 76 48782 48857 [AGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATATGAATCAAATACCTGTCGATTTT] HWI-EAS406:7:33:1719:1816#0 1 1 76 48807 48882 [AATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGG] HWI-EAS406:5:17:1474:1143#0 1 1 76 48883 48958 [GCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCT] HWI-EAS406:7:33:65:1522#0 1 1 76 48890 48965 [CATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCT] HWI-EAS406:7:97:1691:1904#0 1 1 76 48897 48972 [TTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTA] HWI-EAS406:6:62:998:2004#0 1 1 76 48927 49002 [GTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTC] HWI-EAS406:7:41:1526:1040#0 1 1 76 48936 49011 [GCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTCACAATACTCTTCACAGCTGTGAGC] HWI-EAS406:5:63:1654:235#0 1 1 76 48960 49035 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49084-49976] There are [46] sequences in this contig [AGAGATATGAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAAC] HWI-EAS406:5:54:681:1708#0 1 1 76 49107 49182 [GAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCG] HWI-EAS406:7:30:1305:206#0 1 1 76 49115 49190 [TGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAACCGTATCTCT] HWI-EAS406:7:68:588:743#0 1 1 76 49145 49220 [GAACCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTCTGA] HWI-EAS406:5:60:1517:1629#0 1 1 76 49208 49283 [AGCCTGTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCC] HWI-EAS406:7:97:948:1532#0 1 1 76 49269 49344 [GTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAA] HWI-EAS406:7:53:1440:1060#0 1 1 76 49274 49349 [TCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGT] HWI-EAS406:5:68:1041:1314#0 1 1 76 49279 49354 [TCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGTGAGACGGTGGCGGTATGAGGGTTGCTTGA] HWI-EAS406:5:92:967:285#0 1 1 76 49308 49383 [TAAAAAAATGAAAAAAATAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACA] HWI-EAS406:7:98:1054:1631#0 1 1 76 49389 49464 [TAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTA] HWI-EAS406:6:33:635:533#0 1 1 76 49406 49481 [TTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGAC] HWI-EAS406:5:63:1559:1547#0 1 1 76 49453 49528 [AAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGA] HWI-EAS406:6:54:789:786#0 1 1 76 49459 49534 [TTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAA] HWI-EAS406:6:39:1685:1777#0 1 1 76 49470 49545 [AGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGT] HWI-EAS406:6:95:1346:1513#0 1 1 76 49476 49551 [AAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTC] HWI-EAS406:7:45:856:1803#0 1 1 76 49495 49570 [ATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCAC] HWI-EAS406:7:17:551:847#0 1 1 76 49507 49582 [CAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAAC] HWI-EAS406:7:55:752:1229#0 1 1 76 49524 49599 [AGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACA] HWI-EAS406:7:37:659:1877#0 1 1 76 49525 49600 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:5:52:34:1884#0 1 1 76 49531 49606 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:6:40:1211:1751#0 1 1 76 49531 49606 [CGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC] HWI-EAS406:5:58:257:1600#0 1 1 76 49555 49630 [CCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTCCA] HWI-EAS406:6:72:868:197#0 1 1 76 49557 49632 [CCACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATG] HWI-EAS406:7:35:1732:912#0 1 1 76 49601 49676 [CACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGA] HWI-EAS406:5:6:321:1826#0 1 1 76 49602 49677 [ACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAG] HWI-EAS406:6:2:1733:562#0 1 1 76 49603 49678 [AAGATGAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAA] HWI-EAS406:5:44:1362:1897#0 1 1 76 49671 49746 [GAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCA] HWI-EAS406:6:1:1082:657#0 1 1 76 49676 49751 [GCCTGCAAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAG] HWI-EAS406:6:53:1533:1846#0 1 1 76 49754 49829 [AAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGAT] HWI-EAS406:5:83:1518:639#0 1 1 76 49760 49835 [GTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAG] HWI-EAS406:7:6:1067:204#0 1 1 76 49789 49864 [TCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCG] HWI-EAS406:6:41:858:1916#0 1 1 76 49806 49881 [CCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGT] HWI-EAS406:7:26:1458:1886#0 1 1 76 49807 49882 [TTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACG] HWI-EAS406:6:2:872:581#0 1 1 76 49814 49889 [CTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGAT] HWI-EAS406:7:7:311:1973#0 1 1 76 49847 49922 [TGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATC] HWI-EAS406:5:43:1531:1812#0 1 1 76 49848 49923 [GATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAG] HWI-EAS406:5:80:139:821#0 1 1 76 49857 49932 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:5:26:200:1239#0 1 1 76 49861 49936 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:6:26:1096:1809#0 1 1 76 49861 49936 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:24:774:383#0 1 1 76 49862 49937 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:49:1571:1861#0 1 1 76 49862 49937 [AGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCC] HWI-EAS406:7:94:1301:1918#0 1 1 76 49866 49941 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:5:2:12:1497#0 1 1 76 49879 49954 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:6:9:645:1495#0 1 1 76 49879 49954 [CGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCT] HWI-EAS406:7:64:1555:372#0 1 1 76 49880 49955 [CTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTC] HWI-EAS406:6:24:463:628#0 1 1 76 49894 49969 [CGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTA] HWI-EAS406:7:8:863:63#0 1 1 76 49901 49976 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49982-50183] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50401-50539] There are [7] sequences in this contig [AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGC] HWI-EAS406:7:4:1328:1505#0 1 1 76 50401 50476 [CTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAG] HWI-EAS406:7:68:1290:1820#0 1 1 76 50410 50485 [GTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATAC] HWI-EAS406:7:93:895:769#0 1 1 76 50426 50501 [ATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATC] HWI-EAS406:5:38:578:1978#0 1 1 76 50439 50514 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:40:685:1064#0 1 1 76 50444 50519 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:6:73:1068:946#0 1 1 76 50453 50528 [ATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTT] HWI-EAS406:5:9:479:1782#0 1 1 76 50464 50539 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50554-55307] There are [3361] sequences in this contig [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:43:1500:794#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:84:648:826#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:7:16:503:229#0 1 1 76 50554 50629 [GCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGAC] HWI-EAS406:5:85:289:1897#0 1 1 76 50557 50632 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACA] HWI-EAS406:6:96:103:272#0 1 1 76 50558 50633 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:6:1:208:981#0 1 1 76 50560 50635 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:7:7:1771:1016#0 1 1 76 50560 50635 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCA] HWI-EAS406:5:29:636:1854#0 1 1 76 50564 50639 [GCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAG] HWI-EAS406:7:36:1104:1759#0 1 1 76 50566 50641 [AAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCT] HWI-EAS406:7:54:1327:1715#0 1 1 76 50571 50646 [AAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTC] HWI-EAS406:6:1:1062:918#0 1 1 76 50572 50647 [AAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCT] HWI-EAS406:6:11:1780:829#0 1 1 76 50573 50648 [AGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTG] HWI-EAS406:7:30:1018:1822#0 1 1 76 50574 50649 [GTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGC] HWI-EAS406:6:19:566:1606#0 1 1 76 50590 50665 [CATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGA] HWI-EAS406:5:57:665:1234#0 1 1 76 50592 50667 [TGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCT] HWI-EAS406:6:32:1315:1182#0 1 1 76 50595 50670 [GGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTT] HWI-EAS406:7:73:718:707#0 1 1 76 50596 50671 [GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGG] HWI-EAS406:6:52:1154:867#0 1 1 76 50611 50686 [GAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGA] HWI-EAS406:7:34:629:1493#0 1 1 76 50612 50687 [GACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAG] HWI-EAS406:7:90:1010:1759#0 1 1 76 50616 50691 [ACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGT] HWI-EAS406:7:94:774:1420#0 1 1 76 50617 50692 [CAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCG] HWI-EAS406:7:40:826:413#0 1 1 76 50619 50694 [GCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTT] HWI-EAS406:6:74:90:506#0 1 1 76 50628 50703 [TGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAG] HWI-EAS406:6:21:173:1409#0 1 1 76 50648 50723 [GGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAG] HWI-EAS406:7:64:926:1064#0 1 1 76 50661 50736 [GCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGC] HWI-EAS406:5:32:717:546#0 1 1 76 50736 50811 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:5:65:1666:1672#0 1 1 76 50739 50814 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:6:24:1782:1765#0 1 1 76 50745 50820 [AAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGC] HWI-EAS406:5:23:1107:1513#0 1 1 76 50747 50822 [GCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGAC] HWI-EAS406:7:38:557:566#0 1 1 76 50752 50827 [CTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACG] HWI-EAS406:6:49:1324:1654#0 1 1 76 50753 50828 [TCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGA] HWI-EAS406:7:59:762:782#0 1 1 76 50754 50829 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:24:963:235#0 1 1 76 50756 50831 [CACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGA] HWI-EAS406:6:64:951:728#0 1 1 76 50764 50839 [ACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAA] HWI-EAS406:6:56:768:1346#0 1 1 76 50765 50840 [CGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAG] HWI-EAS406:5:3:205:160#0 1 1 76 50773 50848 [GGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGC] HWI-EAS406:7:34:471:1673#0 1 1 76 50774 50849 [GACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCT] HWI-EAS406:5:46:1284:820#0 1 1 76 50779 50854 [TCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCA] HWI-EAS406:6:5:1225:596#0 1 1 76 50783 50858 [CCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAG] HWI-EAS406:6:7:835:305#0 1 1 76 50784 50859 [GGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCG] HWI-EAS406:7:74:747:461#0 1 1 76 50802 50877 [TCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCG] HWI-EAS406:7:74:174:410#0 1 1 76 50808 50883 [ATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAG] HWI-EAS406:7:37:415:589#0 1 1 76 50818 50893 [GAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:7:6:1564:858#0 1 1 76 50846 50921 [CAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCT] HWI-EAS406:7:7:1295:1258#0 1 1 76 50857 50932 [AGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTA] HWI-EAS406:7:55:52:968#0 1 1 76 50858 50933 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:34:1227:1484#0 1 1 76 50885 50960 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:6:15:427:980#0 1 1 76 50890 50965 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:5:1113:853#0 1 1 76 50905 50980 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:5:77:324:1399#0 1 1 76 50911 50986 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:6:3:1766:1294#0 1 1 76 50911 50986 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:6:68:479:1856#0 1 1 76 50912 50987 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:7:84:89:1889#0 1 1 76 50912 50987 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:27:1458:1785#0 1 1 76 50914 50989 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:5:80:1487:4#0 1 1 76 50915 50990 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:822:1111#0 1 1 76 50915 50990 [AGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTT] HWI-EAS406:6:67:1266:536#0 1 1 76 50917 50992 [TTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACAT] HWI-EAS406:6:53:391:407#0 1 1 76 50946 51021 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:7:51:1586:385#0 1 1 76 51057 51132 [TTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTG] HWI-EAS406:5:77:1740:1118#0 1 1 76 51067 51142 [GTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAAT] HWI-EAS406:5:75:1703:1973#0 1 1 76 51097 51172 [TTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCC] HWI-EAS406:6:59:1497:1156#0 1 1 76 51106 51181 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:45:613:569#0 1 1 76 51114 51189 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:6:38:774:1374#0 1 1 76 51119 51194 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:7:19:1655:985#0 1 1 76 51119 51194 [GTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAA] HWI-EAS406:6:1:411:322#0 1 1 76 51125 51200 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:60:917:484#0 1 1 76 51126 51201 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:7:45:192:1424#0 1 1 76 51126 51201 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:22:460:1175#0 1 1 76 51127 51202 [TTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGA] HWI-EAS406:7:9:483:12#0 1 1 76 51134 51209 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1024:1704#0 1 1 76 51136 51211 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:7:44:768:1276#0 1 1 76 51136 51211 [GTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGT] HWI-EAS406:7:25:542:1763#0 1 1 76 51139 51214 [TTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTG] HWI-EAS406:7:56:429:836#0 1 1 76 51140 51215 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:51:712:653#0 1 1 76 51142 51217 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:46:769:653#0 1 1 76 51143 51218 [TTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAA] HWI-EAS406:7:28:1567:1843#0 1 1 76 51145 51220 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:31:66:1932#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:80:607:669#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:47:37:1870#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:57:619:901#0 1 1 76 51150 51225 [TTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGA] HWI-EAS406:5:55:446:1090#0 1 1 76 51156 51231 [CTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAAT] HWI-EAS406:5:71:1271:1404#0 1 1 76 51158 51233 [ACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCAT] HWI-EAS406:7:46:161:1083#0 1 1 76 51162 51237 [GATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGT] HWI-EAS406:6:55:894:421#0 1 1 76 51166 51241 [AATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGG] HWI-EAS406:7:48:228:1846#0 1 1 76 51170 51245 [ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGG] HWI-EAS406:5:59:568:1370#0 1 1 76 51171 51246 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:7:49:1543:1352#0 1 1 76 51177 51252 [TCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAG] HWI-EAS406:5:60:1319:266#0 1 1 76 51179 51254 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:52:727:1470#0 1 1 76 51180 51255 [CAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGG] HWI-EAS406:5:63:1667:1992#0 1 1 76 51181 51256 [ATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTG] HWI-EAS406:5:46:1397:1605#0 1 1 76 51183 51258 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:5:23:1576:1720#0 1 1 76 51186 51261 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:7:53:872:761#0 1 1 76 51186 51261 [TTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGT] HWI-EAS406:7:36:218:140#0 1 1 76 51190 51265 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:456:1253#0 1 1 76 51194 51269 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:5:40:683:389#0 1 1 76 51195 51270 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:6:99:167:1295#0 1 1 76 51195 51270 [GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTT] HWI-EAS406:7:24:1480:278#0 1 1 76 51205 51280 [GATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTA] HWI-EAS406:6:47:812:175#0 1 1 76 51208 51283 [CTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATAT] HWI-EAS406:7:45:715:611#0 1 1 76 51225 51300 [GGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCC] HWI-EAS406:7:52:777:540#0 1 1 76 51229 51304 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:53:1708:725#0 1 1 76 51233 51308 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:55:1111:1008#0 1 1 76 51233 51308 [TCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCT] HWI-EAS406:7:44:635:681#0 1 1 76 51234 51309 [AGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTA] HWI-EAS406:6:51:1602:1743#0 1 1 76 51243 51318 [AAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATG] HWI-EAS406:7:72:942:1104#0 1 1 76 51252 51327 [TTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTT] HWI-EAS406:5:54:509:734#0 1 1 76 51265 51340 [GCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCA] HWI-EAS406:5:80:717:232#0 1 1 76 51270 51345 [CTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCAC] HWI-EAS406:6:52:1029:1911#0 1 1 76 51271 51346 [TTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTT] HWI-EAS406:6:40:135:217#0 1 1 76 51280 51355 [GTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCAT] HWI-EAS406:7:50:892:1037#0 1 1 76 51286 51361 [TTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATT] HWI-EAS406:7:51:1180:964#0 1 1 76 51294 51369 [TCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTT] HWI-EAS406:5:52:1010:1723#0 1 1 76 51295 51370 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:5:36:629:1477#0 1 1 76 51296 51371 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:6:56:196:1560#0 1 1 76 51296 51371 [CCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCG] HWI-EAS406:7:66:1229:1457#0 1 1 76 51303 51378 [TTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA] HWI-EAS406:5:28:1059:907#0 1 1 76 51305 51380 [GCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAG] HWI-EAS406:5:46:395:1707#0 1 1 76 51307 51382 [CTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGG] HWI-EAS406:7:41:1649:828#0 1 1 76 51308 51383 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:7:50:1701:636#0 1 1 76 51317 51392 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:6:97:666:1514#0 1 1 76 51325 51400 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:7:79:454:980#0 1 1 76 51325 51400 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:83:1758:1547#0 1 1 76 51327 51402 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:55:1085:812#0 1 1 76 51333 51408 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:45:1784:1703#0 1 1 76 51340 51415 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:75:977:1193#0 1 1 76 51341 51416 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:83:23:1147#0 1 1 76 51341 51416 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:5:66:1350:1008#0 1 1 76 51343 51418 [CACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCT] HWI-EAS406:7:40:988:1790#0 1 1 76 51344 51419 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:6:21:1052:487#0 1 1 76 51348 51423 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:53:1085:1630#0 1 1 76 51355 51430 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:76:504:223#0 1 1 76 51355 51430 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:61:102:1424#0 1 1 76 51356 51431 [ATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTT] HWI-EAS406:7:67:853:1547#0 1 1 76 51357 51432 [TCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTG] HWI-EAS406:5:43:512:2027#0 1 1 76 51358 51433 [CATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGC] HWI-EAS406:6:51:1565:1778#0 1 1 76 51359 51434 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:68:1234:1128#0 1 1 76 51363 51438 [GCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGA] HWI-EAS406:6:28:1631:1290#0 1 1 76 51365 51440 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:41:997:642#0 1 1 76 51367 51442 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:46:1363:675#0 1 1 76 51367 51442 [CTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTG] HWI-EAS406:7:67:1153:1729#0 1 1 76 51371 51446 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:51:1783:1732#0 1 1 76 51372 51447 [CCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT] HWI-EAS406:7:39:1211:2033#0 1 1 76 51375 51450 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:5:7:1228:400#0 1 1 76 51376 51451 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:6:60:780:1892#0 1 1 76 51376 51451 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:6:50:731:984#0 1 1 76 51377 51452 [GAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAA] HWI-EAS406:6:51:108:1422#0 1 1 76 51378 51453 [TGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGC] HWI-EAS406:5:59:144:1944#0 1 1 76 51384 51459 [GTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCT] HWI-EAS406:7:50:397:1516#0 1 1 76 51385 51460 [TTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTA] HWI-EAS406:6:44:1729:1021#0 1 1 76 51386 51461 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:5:65:954:1755#0 1 1 76 51388 51463 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:6:57:1789:1580#0 1 1 76 51388 51463 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:44:794:1993#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:53:1459:823#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:6:53:911:1708#0 1 1 76 51389 51464 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:34:1608:163#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:43:1600:240#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:6:45:1200:1310#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:7:59:1447:1020#0 1 1 76 51390 51465 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:6:43:1110:1150#0 1 1 76 51391 51466 [GAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAG] HWI-EAS406:5:46:1057:798#0 1 1 76 51392 51467 [AATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCT] HWI-EAS406:5:46:1495:1178#0 1 1 76 51394 51469 [ATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTA] HWI-EAS406:7:55:1203:544#0 1 1 76 51395 51470 [TGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAA] HWI-EAS406:7:50:940:1822#0 1 1 76 51396 51471 [CCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATA] HWI-EAS406:5:41:907:1844#0 1 1 76 51398 51473 [CCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAG] HWI-EAS406:7:53:1444:557#0 1 1 76 51399 51474 [CGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGA] HWI-EAS406:7:51:1720:921#0 1 1 76 51400 51475 [GAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGAC] HWI-EAS406:7:85:1682:878#0 1 1 76 51401 51476 [GACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTT] HWI-EAS406:6:55:373:154#0 1 1 76 51403 51478 [AACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTT] HWI-EAS406:5:17:1384:1558#0 1 1 76 51406 51481 [ACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTA] HWI-EAS406:5:55:1012:1598#0 1 1 76 51407 51482 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:64:1284:590#0 1 1 76 51488 51563 [ATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAG] HWI-EAS406:7:41:26:1789#0 1 1 76 51500 51575 [TTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATT] HWI-EAS406:6:53:39:1372#0 1 1 76 51504 51579 [TCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTG] HWI-EAS406:5:42:711:818#0 1 1 76 51505 51580 [GACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGC] HWI-EAS406:5:23:374:1326#0 1 1 76 51514 51589 [ACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT] HWI-EAS406:6:53:1070:1881#0 1 1 76 51515 51590 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:6:44:1471:1754#0 1 1 76 51520 51595 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:7:49:1247:784#0 1 1 76 51520 51595 [GTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGA] HWI-EAS406:7:52:523:1250#0 1 1 76 51524 51599 [TTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATA] HWI-EAS406:6:48:1635:1117#0 1 1 76 51526 51601 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:5:50:1396:1724#0 1 1 76 51532 51607 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:7:55:1695:1934#0 1 1 76 51532 51607 [ATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGAT] HWI-EAS406:7:75:1084:1280#0 1 1 76 51533 51608 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:5:53:1039:831#0 1 1 76 51534 51609 [TTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGA] HWI-EAS406:5:46:847:740#0 1 1 76 51536 51611 [CAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCAT] HWI-EAS406:6:54:1299:528#0 1 1 76 51540 51615 [AAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATT] HWI-EAS406:5:27:1164:521#0 1 1 76 51541 51616 [ATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTG] HWI-EAS406:6:47:445:273#0 1 1 76 51543 51618 [GCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCAT] HWI-EAS406:7:45:553:1319#0 1 1 76 51547 51622 [CATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATC] HWI-EAS406:7:11:854:1813#0 1 1 76 51548 51623 [TTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCT] HWI-EAS406:5:38:485:1629#0 1 1 76 51550 51625 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:7:45:1007:739#0 1 1 76 51556 51631 [ATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATAC] HWI-EAS406:5:39:868:1983#0 1 1 76 51561 51636 [GCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATG] HWI-EAS406:7:40:711:530#0 1 1 76 51588 51663 [TGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGT] HWI-EAS406:5:69:29:997#0 1 1 76 51597 51672 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:5:25:1170:1418#0 1 1 76 51598 51673 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:6:39:632:1874#0 1 1 76 51598 51673 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:46:1372:1936#0 1 1 76 51602 51677 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:55:604:688#0 1 1 76 51602 51677 [TGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTT] HWI-EAS406:5:53:1104:1965#0 1 1 76 51605 51680 [GATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTC] HWI-EAS406:5:40:1519:548#0 1 1 76 51606 51681 [ATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCC] HWI-EAS406:7:54:543:798#0 1 1 76 51607 51682 [TTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCT] HWI-EAS406:6:53:520:1012#0 1 1 76 51608 51683 [TCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAG] HWI-EAS406:6:98:1293:1754#0 1 1 76 51612 51687 [CATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGT] HWI-EAS406:5:63:1624:1802#0 1 1 76 51613 51688 [ATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTC] HWI-EAS406:6:8:950:1304#0 1 1 76 51614 51689 [TTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCA] HWI-EAS406:5:61:535:401#0 1 1 76 51615 51690 [TTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAA] HWI-EAS406:5:26:1745:468#0 1 1 76 51616 51691 [TGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAA] HWI-EAS406:6:66:722:1305#0 1 1 76 51617 51692 [CCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAA] HWI-EAS406:7:51:1116:1731#0 1 1 76 51619 51694 [CTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTAT] HWI-EAS406:6:58:303:1017#0 1 1 76 51624 51699 [TAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCA] HWI-EAS406:5:20:238:217#0 1 1 76 51626 51701 [TTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTC] HWI-EAS406:7:61:801:741#0 1 1 76 51629 51704 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:5:34:186:1817#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:6:50:1685:713#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:7:46:986:941#0 1 1 76 51643 51718 [GGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTT] HWI-EAS406:5:53:18:1405#0 1 1 76 51649 51724 [GTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTA] HWI-EAS406:6:66:358:148#0 1 1 76 51650 51725 [ATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT] HWI-EAS406:6:65:348:565#0 1 1 76 51655 51730 [CCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAAC] HWI-EAS406:5:45:738:957#0 1 1 76 51665 51740 [TTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCA] HWI-EAS406:6:38:975:65#0 1 1 76 51677 51752 [CATAGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATC] HWI-EAS406:6:48:1130:1880#0 1 1 76 51728 51803 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:5:48:881:559#0 1 1 76 51734 51809 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:7:49:622:558#0 1 1 76 51734 51809 [ACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTG] HWI-EAS406:7:54:742:672#0 1 1 76 51739 51814 [ATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTC] HWI-EAS406:5:44:1175:996#0 1 1 76 51743 51818 [TCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCG] HWI-EAS406:7:39:1740:231#0 1 1 76 51744 51819 [AAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACA] HWI-EAS406:6:46:1377:1168#0 1 1 76 51747 51822 [AATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAA] HWI-EAS406:7:64:25:503#0 1 1 76 51748 51823 [TCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATC] HWI-EAS406:5:4:309:1035#0 1 1 76 51750 51825 [GCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACT] HWI-EAS406:5:4:776:1060#0 1 1 76 51759 51834 [ACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTAC] HWI-EAS406:5:65:809:1514#0 1 1 76 51761 51836 [CTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACA] HWI-EAS406:5:60:1269:1183#0 1 1 76 51762 51837 [TAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAAC] HWI-EAS406:5:41:1628:1655#0 1 1 76 51764 51839 [GATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACAT] HWI-EAS406:6:33:424:176#0 1 1 76 51766 51841 [TAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTG] HWI-EAS406:5:61:1080:471#0 1 1 76 51769 51844 [TACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGA] HWI-EAS406:5:40:1290:1233#0 1 1 76 51777 51852 [CTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGC] HWI-EAS406:6:40:1036:2014#0 1 1 76 51779 51854 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:36:1245:927#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:52:297:1809#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:59:1054:1320#0 1 1 76 51780 51855 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:5:46:940:679#0 1 1 76 51781 51856 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:7:82:46:1850#0 1 1 76 51781 51856 [TCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAA] HWI-EAS406:7:30:584:783#0 1 1 76 51786 51861 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:3:1035:1388#0 1 1 76 51787 51862 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:30:1615:1913#0 1 1 76 51787 51862 [TCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAAC] HWI-EAS406:6:61:345:943#0 1 1 76 51788 51863 [CAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACT] HWI-EAS406:5:52:1113:1467#0 1 1 76 51789 51864 [AGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTC] HWI-EAS406:5:49:1366:809#0 1 1 76 51790 51865 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:5:83:566:978#0 1 1 76 51792 51867 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:6:44:1301:33#0 1 1 76 51792 51867 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1337:2008#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1338:2010#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:44:1177:1897#0 1 1 76 51793 51868 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:39:726:1083#0 1 1 76 51794 51869 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:90:1469:1403#0 1 1 76 51794 51869 [TTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC] HWI-EAS406:6:84:547:967#0 1 1 76 51795 51870 [GATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATC] HWI-EAS406:7:79:983:987#0 1 1 76 51798 51873 [CAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCG] HWI-EAS406:7:48:1134:1483#0 1 1 76 51807 51882 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:6:61:1073:816#0 1 1 76 51810 51885 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:7:44:468:1233#0 1 1 76 51810 51885 [CTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTT] HWI-EAS406:5:42:701:241#0 1 1 76 51812 51887 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:5:54:1071:668#0 1 1 76 51815 51890 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:7:57:1749:546#0 1 1 76 51815 51890 [TTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCA] HWI-EAS406:6:2:1018:1610#0 1 1 76 51816 51891 [CAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTC] HWI-EAS406:5:70:667:1808#0 1 1 76 51821 51896 [AATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCT] HWI-EAS406:5:66:1372:1962#0 1 1 76 51822 51897 [CTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAG] HWI-EAS406:5:46:306:950#0 1 1 76 51825 51900 [TCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTA] HWI-EAS406:5:12:265:1242#0 1 1 76 51827 51902 [TATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGA] HWI-EAS406:5:31:812:415#0 1 1 76 51829 51904 [ATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGAT] HWI-EAS406:5:50:1699:1414#0 1 1 76 51830 51905 [ACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTT] HWI-EAS406:7:95:127:1794#0 1 1 76 51832 51907 [ACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACAT] HWI-EAS406:7:44:537:1071#0 1 1 76 51838 51913 [TGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGA] HWI-EAS406:6:60:856:1143#0 1 1 76 51843 51918 [GTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGAT] HWI-EAS406:5:21:1482:1293#0 1 1 76 51844 51919 [CTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTT] HWI-EAS406:5:54:1701:560#0 1 1 76 51846 51921 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:5:86:48:1444#0 1 1 76 51847 51922 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:7:55:910:185#0 1 1 76 51847 51922 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:14:172:1797#0 1 1 76 51851 51926 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:60:333:510#0 1 1 76 51851 51926 [AGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCAC] HWI-EAS406:7:27:1164:411#0 1 1 76 51852 51927 [CCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTT] HWI-EAS406:7:61:206:1212#0 1 1 76 51854 51929 [CTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTG] HWI-EAS406:6:80:363:1516#0 1 1 76 51855 51930 [AAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTG] HWI-EAS406:7:7:1668:1334#0 1 1 76 51859 51934 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:152:1641#0 1 1 76 51865 51940 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:154:1642#0 1 1 76 51865 51940 [ACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTC] HWI-EAS406:6:62:315:1419#0 1 1 76 51869 51944 [AAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTT] HWI-EAS406:5:47:636:1051#0 1 1 76 51874 51949 [TTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTAT] HWI-EAS406:6:74:1253:670#0 1 1 76 51877 51952 [TGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATT] HWI-EAS406:5:25:997:1630#0 1 1 76 51878 51953 [GGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTT] HWI-EAS406:6:78:489:1142#0 1 1 76 51879 51954 [GCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCT] HWI-EAS406:5:34:1146:1143#0 1 1 76 51882 51957 [CCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTT] HWI-EAS406:7:62:1125:1571#0 1 1 76 51883 51958 [CGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTT] HWI-EAS406:5:93:591:1425#0 1 1 76 51884 51959 [TTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTG] HWI-EAS406:6:19:1597:771#0 1 1 76 51886 51961 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:6:43:608:993#0 1 1 76 51887 51962 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:7:13:332:1432#0 1 1 76 51887 51962 [GCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTT] HWI-EAS406:7:39:1330:1144#0 1 1 76 51888 51963 [CAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTAC] HWI-EAS406:7:73:713:226#0 1 1 76 51890 51965 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:52:564:1215#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:77:1015:272#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:2:735:995#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:67:1426:1561#0 1 1 76 51891 51966 [TTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGAT] HWI-EAS406:7:89:27:1856#0 1 1 76 51894 51969 [CTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTC] HWI-EAS406:7:88:159:600#0 1 1 76 51896 51971 [TGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCT] HWI-EAS406:6:47:520:1926#0 1 1 76 51897 51972 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:59:250:1202#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:63:300:431#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:80:1521:675#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:87:892:862#0 1 1 76 51898 51973 [GTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTT] HWI-EAS406:6:71:1176:442#0 1 1 76 51900 51975 [TTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCA] HWI-EAS406:5:82:1083:40#0 1 1 76 51906 51981 [GAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACC] HWI-EAS406:6:30:1392:410#0 1 1 76 51908 51983 [TTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCT] HWI-EAS406:6:53:894:1026#0 1 1 76 51913 51988 [GAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTT] HWI-EAS406:5:81:1562:328#0 1 1 76 51915 51990 [TAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAG] HWI-EAS406:6:79:1028:1016#0 1 1 76 51939 52014 [TCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGC] HWI-EAS406:5:33:751:478#0 1 1 76 51972 52047 [TCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCA] HWI-EAS406:5:52:433:445#0 1 1 76 51976 52051 [TCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGAC] HWI-EAS406:6:81:1602:1312#0 1 1 76 51979 52054 [CACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACA] HWI-EAS406:7:58:1056:909#0 1 1 76 51980 52055 [ACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACAT] HWI-EAS406:6:65:1550:1808#0 1 1 76 51981 52056 [CCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATC] HWI-EAS406:5:26:619:589#0 1 1 76 51982 52057 [TCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAG] HWI-EAS406:5:25:1540:854#0 1 1 76 51984 52059 [CCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGA] HWI-EAS406:6:44:729:758#0 1 1 76 51985 52060 [TAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTT] HWI-EAS406:7:72:764:515#0 1 1 76 51990 52065 [ATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAG] HWI-EAS406:6:26:987:409#0 1 1 76 51992 52067 [TCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGA] HWI-EAS406:5:59:1498:1758#0 1 1 76 51993 52068 [CTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAG] HWI-EAS406:6:43:26:349#0 1 1 76 51994 52069 [TACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGA] HWI-EAS406:6:4:373:1470#0 1 1 76 51995 52070 [AGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAG] HWI-EAS406:5:79:571:1802#0 1 1 76 51998 52073 [GGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGA] HWI-EAS406:7:1:743:1712#0 1 1 76 51999 52074 [TGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGT] HWI-EAS406:7:33:502:813#0 1 1 76 52001 52076 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:6:74:1764:1670#0 1 1 76 52002 52077 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:7:27:1272:939#0 1 1 76 52002 52077 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:30:1002:764#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:86:1501:1809#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:6:95:1326:856#0 1 1 76 52005 52080 [GAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCT] HWI-EAS406:5:10:1349:1560#0 1 1 76 52006 52081 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:5:39:597:1883#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:36:536:1898#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:68:1133:1558#0 1 1 76 52007 52082 [ACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAG] HWI-EAS406:5:78:1629:923#0 1 1 76 52008 52083 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:5:64:51:2029#0 1 1 76 52009 52084 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:6:83:1173:1390#0 1 1 76 52009 52084 [TTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAA] HWI-EAS406:5:40:882:1796#0 1 1 76 52010 52085 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:5:88:516:1281#0 1 1 76 52012 52087 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:6:64:491:681#0 1 1 76 52012 52087 [AGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATA] HWI-EAS406:7:84:1212:1365#0 1 1 76 52013 52088 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:5:40:222:1844#0 1 1 76 52014 52089 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:7:72:699:1313#0 1 1 76 52014 52089 [GAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGA] HWI-EAS406:6:64:307:369#0 1 1 76 52015 52090 [AGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAA] HWI-EAS406:6:60:133:1637#0 1 1 76 52016 52091 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:5:75:1124:1493#0 1 1 76 52017 52092 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:6:56:587:1464#0 1 1 76 52017 52092 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:5:35:1653:2022#0 1 1 76 52018 52093 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:7:68:517:1165#0 1 1 76 52018 52093 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:16:1056:1081#0 1 1 76 52020 52095 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:19:1121:357#0 1 1 76 52020 52095 [GGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAG] HWI-EAS406:7:34:419:1654#0 1 1 76 52022 52097 [TCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAA] HWI-EAS406:6:73:130:1926#0 1 1 76 52024 52099 [CCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAG] HWI-EAS406:6:8:582:399#0 1 1 76 52025 52100 [CATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGA] HWI-EAS406:6:89:579:160#0 1 1 76 52026 52101 [ATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAG] HWI-EAS406:6:41:580:1400#0 1 1 76 52027 52102 [TCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGC] HWI-EAS406:5:17:398:669#0 1 1 76 52028 52103 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:6:84:1266:1109#0 1 1 76 52029 52104 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:7:5:999:1547#0 1 1 76 52029 52104 [AAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAA] HWI-EAS406:5:14:148:1373#0 1 1 76 52030 52105 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:2:1699:806#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:45:1130:1897#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:6:46:377:1707#0 1 1 76 52031 52106 [CCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAG] HWI-EAS406:7:48:1774:327#0 1 1 76 52033 52108 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:5:12:1301:601#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:7:1601:2011#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:64:508:1598#0 1 1 76 52036 52111 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:5:1694:223#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:47:902:645#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:70:1378:1151#0 1 1 76 52037 52112 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:5:10:1713:1450#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:6:59:183:1429#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:7:72:1029:862#0 1 1 76 52039 52114 [ATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGC] HWI-EAS406:5:73:1557:501#0 1 1 76 52043 52118 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:5:32:315:118#0 1 1 76 52046 52121 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:7:22:1366:1478#0 1 1 76 52046 52121 [CTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAG] HWI-EAS406:7:11:1474:1191#0 1 1 76 52047 52122 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:6:78:12:1461#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:5:1068:1061#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:33:1476:1754#0 1 1 76 52048 52123 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:5:9:1339:499#0 1 1 76 52049 52124 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:6:30:958:346#0 1 1 76 52049 52124 [CAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATT] HWI-EAS406:7:65:1412:1398#0 1 1 76 52050 52125 [AGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTG] HWI-EAS406:6:22:214:1178#0 1 1 76 52051 52126 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:6:70:161:1056#0 1 1 76 52054 52129 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:7:18:1536:1583#0 1 1 76 52054 52129 [ATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTA] HWI-EAS406:6:46:1138:842#0 1 1 76 52055 52130 [CAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACT] HWI-EAS406:5:27:303:1774#0 1 1 76 52057 52132 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:5:12:1404:854#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:6:54:1784:1747#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:7:35:720:1415#0 1 1 76 52058 52133 [GAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGA] HWI-EAS406:5:23:1243:48#0 1 1 76 52059 52134 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:18:1525:653#0 1 1 76 52060 52135 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:40:245:523#0 1 1 76 52060 52135 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:5:35:477:859#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:12:1141:652#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:73:1171:1047#0 1 1 76 52061 52136 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:5:17:517:1752#0 1 1 76 52062 52137 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:6:95:231:1845#0 1 1 76 52062 52137 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:5:67:1358:1820#0 1 1 76 52063 52138 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:7:100:638:523#0 1 1 76 52063 52138 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:6:71:494:1059#0 1 1 76 52064 52139 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:7:79:1404:1143#0 1 1 76 52064 52139 [TAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGG] HWI-EAS406:5:91:969:722#0 1 1 76 52065 52140 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:5:37:1425:906#0 1 1 76 52066 52141 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:7:68:1118:1565#0 1 1 76 52066 52141 [GAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAG] HWI-EAS406:5:20:211:742#0 1 1 76 52067 52142 [AGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGA] HWI-EAS406:7:61:827:2#0 1 1 76 52068 52143 [GAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGAC] HWI-EAS406:7:65:1213:1604#0 1 1 76 52069 52144 [GTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT] HWI-EAS406:7:17:207:1549#0 1 1 76 52075 52150 [TGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAA] HWI-EAS406:5:73:656:1860#0 1 1 76 52078 52153 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:6:54:1183:1352#0 1 1 76 52079 52154 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:7:37:993:682#0 1 1 76 52079 52154 [CTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAA] HWI-EAS406:7:74:1122:1374#0 1 1 76 52080 52155 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:6:94:713:1830#0 1 1 76 52081 52156 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:7:9:1499:1250#0 1 1 76 52081 52156 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:65:1142:350#0 1 1 76 52083 52158 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:88:1031:1762#0 1 1 76 52083 52158 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:20:950:1457#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:48:827:2014#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:72:1667:1616#0 1 1 76 52084 52159 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:5:93:525:195#0 1 1 76 52085 52160 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:7:32:1304:195#0 1 1 76 52085 52160 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:5:2:1649:1295#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:6:33:800:1496#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:7:85:342:1989#0 1 1 76 52087 52162 [AGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGC] HWI-EAS406:7:70:1503:1950#0 1 1 76 52088 52163 [GAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCG] HWI-EAS406:7:72:1172:170#0 1 1 76 52089 52164 [AAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGA] HWI-EAS406:5:60:842:1890#0 1 1 76 52090 52165 [AGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAG] HWI-EAS406:5:67:1293:1622#0 1 1 76 52091 52166 [GAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGC] HWI-EAS406:7:4:588:842#0 1 1 76 52092 52167 [AGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCA] HWI-EAS406:6:29:322:1841#0 1 1 76 52093 52168 [GAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAG] HWI-EAS406:7:15:1792:478#0 1 1 76 52094 52169 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:7:1030:1738#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:41:708:742#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:70:671:1443#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:59:1396:1065#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:76:508:213#0 1 1 76 52095 52170 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:5:38:507:1944#0 1 1 76 52096 52171 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:7:68:957:1437#0 1 1 76 52096 52171 [GAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTC] HWI-EAS406:6:25:726:1823#0 1 1 76 52097 52172 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:6:20:1401:1637#0 1 1 76 52098 52173 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:7:81:1000:1464#0 1 1 76 52098 52173 [AGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGA] HWI-EAS406:5:14:933:1952#0 1 1 76 52099 52174 [GAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGAT] HWI-EAS406:5:30:760:323#0 1 1 76 52100 52175 [CAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCA] HWI-EAS406:6:27:61:873#0 1 1 76 52103 52178 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:24:633:991#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:92:467:1920#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:100:519:398#0 1 1 76 52106 52181 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:26:697:1150#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:31:181:887#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:7:10:575:1888#0 1 1 76 52107 52182 [GGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGC] HWI-EAS406:5:73:1149:233#0 1 1 76 52108 52183 [GCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCA] HWI-EAS406:5:55:1257:1795#0 1 1 76 52109 52184 [CTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCAC] HWI-EAS406:6:65:1394:866#0 1 1 76 52110 52185 [TCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACT] HWI-EAS406:5:64:1536:142#0 1 1 76 52111 52186 [ACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTA] HWI-EAS406:6:94:552:341#0 1 1 76 52113 52188 [TTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACG] HWI-EAS406:5:92:1176:518#0 1 1 76 52115 52190 [CAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACC] HWI-EAS406:6:93:1111:754#0 1 1 76 52118 52193 [AGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCG] HWI-EAS406:7:8:1159:1896#0 1 1 76 52119 52194 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:5:80:570:6#0 1 1 76 52121 52196 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:7:18:1662:1508#0 1 1 76 52121 52196 [GATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCC] HWI-EAS406:5:6:168:1581#0 1 1 76 52122 52197 [TTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCA] HWI-EAS406:7:18:1237:879#0 1 1 76 52124 52199 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:3:1517:359#0 1 1 76 52125 52200 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:47:1298:719#0 1 1 76 52125 52200 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:5:27:1331:1024#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:25:283:1331#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:100:833:1685#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:7:100:1443:529#0 1 1 76 52129 52204 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:6:54:764:946#0 1 1 76 52130 52205 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:7:53:686:1832#0 1 1 76 52130 52205 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:56:623:1125#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:86:174:1312#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:6:64:1283:110#0 1 1 76 52131 52206 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:5:87:981:221#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:48:1199:1626#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:67:691:878#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:73:1090:1807#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:7:13:1294:1416#0 1 1 76 52132 52207 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:5:83:1077:920#0 1 1 76 52134 52209 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:6:64:465:861#0 1 1 76 52134 52209 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:5:67:422:1731#0 1 1 76 52138 52213 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:7:34:1113:408#0 1 1 76 52138 52213 [GGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATA] HWI-EAS406:7:13:139:1696#0 1 1 76 52139 52214 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:15:890:3#0 1 1 76 52140 52215 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:28:1255:1618#0 1 1 76 52140 52215 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:5:59:1773:1125#0 1 1 76 52142 52217 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:6:10:1600:1789#0 1 1 76 52142 52217 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:10:430:902#0 1 1 76 52143 52218 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:31:579:224#0 1 1 76 52143 52218 [CATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTG] HWI-EAS406:7:65:1779:423#0 1 1 76 52144 52219 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:5:27:1246:1460#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:38:426:1977#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:39:1537:1000#0 1 1 76 52145 52220 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:19:1617:1113#0 1 1 76 52147 52222 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:64:1133:462#0 1 1 76 52147 52222 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:5:10:1084:1542#0 1 1 76 52148 52223 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:6:36:1502:1446#0 1 1 76 52148 52223 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:21:1461:1189#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:86:1317:698#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:23:1288:392#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:88:1084:268#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:7:2:715:1936#0 1 1 76 52149 52224 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:5:89:1196:1698#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:8:962:500#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:22:86:1843#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:65:1076:100#0 1 1 76 52150 52225 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:31:1000:1428#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:83:1606:783#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:24:1405:1720#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:86:412:478#0 1 1 76 52151 52226 [AAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGA] HWI-EAS406:7:45:921:1899#0 1 1 76 52153 52228 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:18:1405:416#0 1 1 76 52154 52229 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:77:898:1160#0 1 1 76 52154 52229 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:5:69:705:951#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:6:59:917:2034#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:7:9:781:1662#0 1 1 76 52156 52231 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:5:71:400:921#0 1 1 76 52157 52232 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:7:67:181:1796#0 1 1 76 52157 52232 [AACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACC] HWI-EAS406:6:27:521:1119#0 1 1 76 52158 52233 [ACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCC] HWI-EAS406:5:71:343:664#0 1 1 76 52159 52234 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:5:39:281:1500#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:6:74:1508:965#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:7:9:1222:1239#0 1 1 76 52160 52235 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:78:223:715#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:84:1052:218#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:17:484:1798#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:53:1251:1786#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:63:1270:309#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:79:386:1740#0 1 1 76 52161 52236 [GCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCT] HWI-EAS406:7:84:1292:1968#0 1 1 76 52162 52237 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:17:1646:1076#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:85:1195:1727#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:66:1164:987#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:81:1119:760#0 1 1 76 52163 52238 [AGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTG] HWI-EAS406:5:18:780:281#0 1 1 76 52165 52240 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:6:73:1413:1743#0 1 1 76 52166 52241 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:7:16:1149:400#0 1 1 76 52166 52241 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:5:57:651:1240#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:39:1129:669#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:73:857:713#0 1 1 76 52167 52242 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:5:85:1122:1536#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:77:576:1127#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:88:9:511#0 1 1 76 52169 52244 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:6:69:1740:1649#0 1 1 76 52172 52247 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:7:33:131:1634#0 1 1 76 52172 52247 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:5:73:54:1105#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:6:83:1007:1328#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:24:1321:2010#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:33:262:1157#0 1 1 76 52173 52248 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:5:32:335:1336#0 1 1 76 52174 52249 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:7:92:1537:1436#0 1 1 76 52174 52249 [TCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACA] HWI-EAS406:6:39:815:1207#0 1 1 76 52175 52250 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:5:46:793:1726#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:12:251:705#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:31:1436:1202#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:62:333:1365#0 1 1 76 52176 52251 [CATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAAC] HWI-EAS406:5:23:1574:1413#0 1 1 76 52177 52252 [ATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACT] HWI-EAS406:7:40:531:470#0 1 1 76 52178 52253 [TTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTT] HWI-EAS406:7:45:1616:849#0 1 1 76 52179 52254 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:6:92:1396:1272#0 1 1 76 52180 52255 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:7:26:833:1510#0 1 1 76 52180 52255 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:16:1380:1086#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:59:1530:1196#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:87:1126:429#0 1 1 76 52181 52256 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:24:1147:1664#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:50:815:1716#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:59:938:1038#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:6:24:422:883#0 1 1 76 52182 52257 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:5:22:1548:492#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:70:166:1464#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:74:652:283#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:82:460:1457#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:7:11:567:915#0 1 1 76 52184 52259 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:5:75:1704:1180#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:6:76:954:1728#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:7:85:664:780#0 1 1 76 52186 52261 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:6:61:1372:634#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:13:523:1416#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:17:797:359#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:48:709:1660#0 1 1 76 52187 52262 [CGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAA] HWI-EAS406:6:88:356:1840#0 1 1 76 52189 52264 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:5:76:727:1411#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:6:20:1545:1827#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:7:53:143:1483#0 1 1 76 52190 52265 [ACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATC] HWI-EAS406:5:90:738:799#0 1 1 76 52191 52266 [CCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCA] HWI-EAS406:7:88:1091:992#0 1 1 76 52192 52267 [CGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAG] HWI-EAS406:5:58:545:1977#0 1 1 76 52193 52268 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:5:97:592:546#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:19:774:1380#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:100:531:1821#0 1 1 76 52194 52269 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:6:569:1398#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:14:421:609#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:46:1004:1159#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:11:647:1264#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:40:521:1504#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:7:89:1047:871#0 1 1 76 52196 52271 [CCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACT] HWI-EAS406:6:51:982:888#0 1 1 76 52197 52272 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:5:25:136:113#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:41:735:977#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:80:329:1778#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:7:82:1261:1408#0 1 1 76 52198 52273 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:54:1022:1658#0 1 1 76 52200 52275 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:99:1131:851#0 1 1 76 52200 52275 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:2:135:1661#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:7:866:337#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:64:463:1458#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:5:1647:1482#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:84:176:462#0 1 1 76 52201 52276 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:5:34:505:1686#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:6:1746:427#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:25:1017:1385#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:7:35:1369:1740#0 1 1 76 52202 52277 [TTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAA] HWI-EAS406:5:51:532:1851#0 1 1 76 52203 52278 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:6:12:128:1246#0 1 1 76 52206 52281 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:7:87:839:52#0 1 1 76 52206 52281 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:17:760:1366#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:37:901:1209#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:7:80:963:1384#0 1 1 76 52208 52283 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:5:17:1550:1566#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:53:1580#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:65:1000#0 1 1 76 52209 52284 [TCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATC] HWI-EAS406:5:78:758:151#0 1 1 76 52210 52285 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:44:902:842#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:90:598:451#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:6:87:265:605#0 1 1 76 52211 52286 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:6:40:974:965#0 1 1 76 52212 52287 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:7:24:1732:457#0 1 1 76 52212 52287 [TAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAG] HWI-EAS406:7:6:88:1716#0 1 1 76 52213 52288 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:16:939:403#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:57:458:1574#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:58:1137:1204#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:7:83:260:373#0 1 1 76 52214 52289 [TGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAA] HWI-EAS406:5:29:552:681#0 1 1 76 52218 52293 [GGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACA] HWI-EAS406:7:52:1630:1850#0 1 1 76 52220 52295 [AATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAG] HWI-EAS406:7:1:673:233#0 1 1 76 52222 52297 [TCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTA] HWI-EAS406:7:60:720:349#0 1 1 76 52224 52299 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:5:37:1471:715#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:6:87:1099:551#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:32:296:209#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:34:730:917#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:40:1079:1925#0 1 1 76 52225 52300 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:5:28:502:1523#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:11:1160:1199#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:23:620:280#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:5:406:1479#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:23:1311:329#0 1 1 76 52227 52302 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:5:59:154:1118#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:6:4:1519:1520#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:7:13:1280:1416#0 1 1 76 52230 52305 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:34:1624:1554#0 1 1 76 52231 52306 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:64:291:995#0 1 1 76 52231 52306 [CCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTT] HWI-EAS406:5:29:1240:1061#0 1 1 76 52233 52308 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:54:1258:578#0 1 1 76 52234 52309 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:71:1016:982#0 1 1 76 52234 52309 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:5:82:1040:1850#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:23:1181:492#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:76:1486:1891#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:7:52:643:2006#0 1 1 76 52236 52311 [GTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTC] HWI-EAS406:5:67:876:1061#0 1 1 76 52238 52313 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:6:99:364:1232#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:14:1418:1067#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:39:427:1772#0 1 1 76 52240 52315 [GCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAG] HWI-EAS406:5:35:1482:512#0 1 1 76 52241 52316 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:5:12:711:509#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:6:22:715:265#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:7:98:1452:2014#0 1 1 76 52242 52317 [AGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAG] HWI-EAS406:5:11:996:1746#0 1 1 76 52243 52318 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:86:758:1262#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:98:1007:1105#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:34:441:1191#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:83:773:524#0 1 1 76 52245 52320 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:6:23:1360:584#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:65:1518:1039#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:78:1116:1370#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:97:810:1277#0 1 1 76 52246 52321 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:30:537:400#0 1 1 76 52247 52322 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:43:275:744#0 1 1 76 52247 52322 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:5:13:919:1120#0 1 1 76 52248 52323 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:6:25:1022:1875#0 1 1 76 52248 52323 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:1:1367:996#0 1 1 76 52249 52324 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:14:1324:228#0 1 1 76 52249 52324 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:5:5:821:1497#0 1 1 76 52250 52325 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:7:6:193:1715#0 1 1 76 52250 52325 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:5:78:433:497#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:6:52:591:654#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:35:1338:991#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:56:524:1938#0 1 1 76 52251 52326 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:6:68:1629:2018#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:21:978:238#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:64:586:999#0 1 1 76 52252 52327 [TTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTG] HWI-EAS406:6:47:1172:963#0 1 1 76 52253 52328 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:11:1163:662#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:36:494:638#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:7:70:268:1648#0 1 1 76 52254 52329 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:7:1315:1936#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:29:913:1247#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:61:740:1158#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:6:5:187:357#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:4:282:595#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:12:213:2011#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:78:1244:1499#0 1 1 76 52255 52330 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:62:1474:1477#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:73:667:2#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:29:1569:1233#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:61:153:379#0 1 1 76 52256 52331 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:5:90:921:863#0 1 1 76 52257 52332 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:7:31:409:762#0 1 1 76 52257 52332 [GATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCAC] HWI-EAS406:5:45:1329:265#0 1 1 76 52258 52333 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:5:84:1096:658#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:6:76:1047:245#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:18:1148:2023#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:58:1579:1747#0 1 1 76 52259 52334 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:13:590:1308#0 1 1 76 52260 52335 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:71:1211:959#0 1 1 76 52260 52335 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:48:774:839#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:64:134:629#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:7:40:1581:1123#0 1 1 76 52261 52336 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:17:691:1717#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:31:1311:911#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:71:1388:1286#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:15:1153:993#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:69:684:116#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:79:930:176#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:7:16:681:551#0 1 1 76 52262 52337 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:6:83:1596:302#0 1 1 76 52263 52338 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:7:38:1664:916#0 1 1 76 52263 52338 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:5:7:1046:440#0 1 1 76 52264 52339 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:6:37:1487:1516#0 1 1 76 52264 52339 [TCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACA] HWI-EAS406:7:8:666:1502#0 1 1 76 52265 52340 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:25:334:146#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:38:1366:1989#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:52:746:552#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:53:1240:1041#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:68:1437:1987#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:85:323:1728#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:93:1121:225#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:11:1389:1554#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:49:1419:608#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:71:1174:1073#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:7:75:951:1345#0 1 1 76 52266 52341 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:15:947:1923#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:17:1464:1199#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:13:943:1893#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:71:346:1276#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:93:161:1371#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:94:1100:882#0 1 1 76 52267 52342 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:5:86:281:653#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:19:674:714#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:48:1353:1724#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:7:29:1542:1037#0 1 1 76 52268 52343 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:5:86:810:1629#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:34:1378:1501#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:64:183:1239#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:7:22:450:1492#0 1 1 76 52269 52344 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:5:14:1646:1734#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:6:83:1746:217#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:49:522:970#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:84:887:295#0 1 1 76 52270 52345 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:5:49:1017:1244#0 1 1 76 52271 52346 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:7:80:842:1267#0 1 1 76 52271 52346 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:23:629:1683#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:60:1493:1305#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:68:630:343#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:28:1402:643#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:68:300:1753#0 1 1 76 52272 52347 [CCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGAC] HWI-EAS406:7:77:1303:1334#0 1 1 76 52273 52348 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:24:1412:1968#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:87:579:655#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:7:59:1571:1671#0 1 1 76 52274 52349 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:27:888:654#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:44:1426:967#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:6:9:915:1768#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:43:1353:349#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:57:923:841#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:80:1425:1717#0 1 1 76 52276 52351 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:4:195:1410#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:10:640:255#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:53:346:769#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:7:85:1068:1802#0 1 1 76 52277 52352 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:5:7:123:677#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:6:91:376:1230#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:7:61:1752:1817#0 1 1 76 52278 52353 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:52:527:1818#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:98:806:313#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:21:1167:455#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:50:1317:1946#0 1 1 76 52279 52354 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:6:96:484:1269#0 1 1 76 52280 52355 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:7:52:1223:1795#0 1 1 76 52280 52355 [GATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGT] HWI-EAS406:6:62:601:1096#0 1 1 76 52282 52357 [ATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTG] HWI-EAS406:7:40:673:1073#0 1 1 76 52283 52358 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:28:714:1051#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:46:1063:1975#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:6:36:660:431#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:7:6:1104:1516#0 1 1 76 52284 52359 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:3:1687:1148#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:92:222:1451#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:54:1624:322#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:77:293:1567#0 1 1 76 52285 52360 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:5:15:1334:1117#0 1 1 76 52286 52361 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:6:95:1198:1326#0 1 1 76 52286 52361 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:13:1280:1125#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:30:1591:708#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:37:976:1723#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:24:1169:1420#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:95:251:372#0 1 1 76 52287 52362 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:5:55:1530:1535#0 1 1 76 52288 52363 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:6:59:506:348#0 1 1 76 52288 52363 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:5:79:394:1921#0 1 1 76 52290 52365 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:6:36:739:479#0 1 1 76 52290 52365 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:5:59:301:1567#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:6:1691:1668#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:89:544:1361#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:36:845:1416#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:78:917:801#0 1 1 76 52292 52367 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:5:78:1278:1860#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:6:30:59:1461#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:7:19:811:1021#0 1 1 76 52293 52368 [CAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAA] HWI-EAS406:7:38:1739:351#0 1 1 76 52294 52369 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:39:1693:773#0 1 1 76 52296 52371 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:72:1492:975#0 1 1 76 52296 52371 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:9:513:554#0 1 1 76 52297 52372 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:80:1083:780#0 1 1 76 52297 52372 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:5:1:896:595#0 1 1 76 52298 52373 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:7:67:565:904#0 1 1 76 52298 52373 [ATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAA] HWI-EAS406:5:74:1730:1358#0 1 1 76 52299 52374 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:24:498:151#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:33:1187:650#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:89:327:810#0 1 1 76 52300 52375 [CATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATG] HWI-EAS406:7:11:955:1706#0 1 1 76 52301 52376 [ATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGG] HWI-EAS406:5:1:1774:1615#0 1 1 76 52302 52377 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:79:357:290#0 1 1 76 52303 52378 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:86:1242:822#0 1 1 76 52303 52378 [GGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTG] HWI-EAS406:5:5:1401:1725#0 1 1 76 52304 52379 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:70:1431:96#0 1 1 76 52305 52380 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:83:1673:880#0 1 1 76 52305 52380 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:54:954:1475#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:79:159:1997#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:7:91:139:1980#0 1 1 76 52306 52381 [TTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGT] HWI-EAS406:7:84:983:1321#0 1 1 76 52307 52382 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:5:79:1745:1147#0 1 1 76 52308 52383 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:6:22:1189:680#0 1 1 76 52308 52383 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:21:547:416#0 1 1 76 52309 52384 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:92:1137:1402#0 1 1 76 52309 52384 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:6:785:515#0 1 1 76 52310 52385 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:72:1490:50#0 1 1 76 52310 52385 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:43:1006:992#0 1 1 76 52311 52386 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:56:1090:611#0 1 1 76 52311 52386 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:24:233:961#0 1 1 76 52312 52387 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:95:972:973#0 1 1 76 52312 52387 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:5:17:303:965#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:14:1260:460#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:30:551:90#0 1 1 76 52313 52388 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:5:37:1278:1788#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:33:930:1428#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:62:1218:840#0 1 1 76 52314 52389 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:64:270:680#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:75:1545:33#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:11:1735:332#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:54:496:1518#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:56:778:387#0 1 1 76 52315 52390 [AGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGC] HWI-EAS406:6:94:1246:1663#0 1 1 76 52317 52392 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:6:42:1509:946#0 1 1 76 52319 52394 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:7:50:929:653#0 1 1 76 52319 52394 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:6:61:1298:1596#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:52:717:1780#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:76:1646:1467#0 1 1 76 52320 52395 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:6:66:392:1831#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:76:668:942#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:79:214:1087#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:99:685:562#0 1 1 76 52322 52397 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:78:1623:1950#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:85:1401:153#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:6:37:1677:1094#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:53:617:1394#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:60:92:692#0 1 1 76 52323 52398 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:66:1756:1393#0 1 1 76 52324 52399 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:99:386:1047#0 1 1 76 52324 52399 [TTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCT] HWI-EAS406:7:65:383:1927#0 1 1 76 52326 52401 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:4:654:477#0 1 1 76 52327 52402 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:71:185:1268#0 1 1 76 52327 52402 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:5:9:857:1601#0 1 1 76 52328 52403 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:6:87:352:1381#0 1 1 76 52328 52403 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:62:1384:1693#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:99:1383:725#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:7:15:993:1349#0 1 1 76 52329 52404 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:5:86:1430:15#0 1 1 76 52330 52405 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:6:68:792:418#0 1 1 76 52330 52405 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:14:1447:825#0 1 1 76 52331 52406 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:15:1080:1881#0 1 1 76 52331 52406 [ACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCT] HWI-EAS406:5:15:1215:481#0 1 1 76 52332 52407 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:5:19:722:1722#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:6:18:963:285#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:7:49:628:1029#0 1 1 76 52333 52408 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:35:1298:1838#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:37:496:730#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:17:1341:371#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:46:1262:1804#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:48:776:786#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:26:623:605#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:82:1533:327#0 1 1 76 52334 52409 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:5:71:648:1749#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:6:1574:1798#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:98:1452:1598#0 1 1 76 52335 52410 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:20:291:1335#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:26:813:679#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:76:1715:954#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:82:1081:1905#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:83:672:1351#0 1 1 76 52336 52411 [GACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCC] HWI-EAS406:6:26:79:1984#0 1 1 76 52337 52412 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:8:1766:1437#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:48:517:851#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:38:1169:1242#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:48:713:1735#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:7:73:1464:1506#0 1 1 76 52338 52413 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:5:6:196:217#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:12:911:698#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:62:1681:703#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:82:724:1281#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:54:940:1383#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:76:1666:962#0 1 1 76 52340 52415 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:5:65:411:1394#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:6:35:519:177#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:7:83:606:14#0 1 1 76 52341 52416 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:6:37:1476:639#0 1 1 76 52342 52417 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:7:65:672:108#0 1 1 76 52342 52417 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:45:282:1760#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:80:1605:805#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:38:196:252#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:55:1424:1623#0 1 1 76 52343 52418 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:5:4:820:1980#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:33:617:236#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:76:1431:640#0 1 1 76 52344 52419 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:63:689:473#0 1 1 76 52346 52421 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:82:1672:1506#0 1 1 76 52346 52421 [ACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTT] HWI-EAS406:7:87:1378:1986#0 1 1 76 52347 52422 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:6:18:104:1732#0 1 1 76 52348 52423 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:7:85:742:826#0 1 1 76 52348 52423 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:78:277:975#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:86:1514:1063#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:98:1616:938#0 1 1 76 52349 52424 [GCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGG] HWI-EAS406:5:53:372:990#0 1 1 76 52350 52425 [CTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGG] HWI-EAS406:7:88:322:659#0 1 1 76 52351 52426 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:80:77:1738#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:99:1630:380#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:7:28:15:1735#0 1 1 76 52352 52427 [ACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGA] HWI-EAS406:7:2:976:627#0 1 1 76 52353 52428 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:5:60:513:1239#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:6:77:603:1284#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:28:570:1220#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:52:511:1590#0 1 1 76 52354 52429 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:2:1424:581#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:30:673:873#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:70:1713:1317#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:83:833:377#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:7:8:368:1271#0 1 1 76 52355 52430 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:5:49:452:1791#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:6:66:1354:1650#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:7:67:1470:1467#0 1 1 76 52356 52431 [GGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGC] HWI-EAS406:7:57:1013:941#0 1 1 76 52359 52434 [GTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCA] HWI-EAS406:6:22:1141:882#0 1 1 76 52360 52435 [TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCAC] HWI-EAS406:7:86:123:1529#0 1 1 76 52361 52436 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:5:60:1506:520#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:6:53:1668:1315#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:42:853:1654#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:45:987:603#0 1 1 76 52362 52437 [GTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGT] HWI-EAS406:7:39:1343:1585#0 1 1 76 52363 52438 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:5:63:9:408#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:23:683:1669#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:33:330:1673#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:56:1406:957#0 1 1 76 52365 52440 [AAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTG] HWI-EAS406:7:16:1679:536#0 1 1 76 52368 52443 [AACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGG] HWI-EAS406:5:90:999:2029#0 1 1 76 52369 52444 [ACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGG] HWI-EAS406:7:11:1490:1402#0 1 1 76 52370 52445 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:5:38:1343:184#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:6:21:1412:1644#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:2:1141:279#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:93:349:1860#0 1 1 76 52371 52446 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:5:83:994:1882#0 1 1 76 52372 52447 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:6:77:942:1146#0 1 1 76 52372 52447 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:5:82:1760:1734#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:32:555:593#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:99:160:1579#0 1 1 76 52373 52448 [ATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAA] HWI-EAS406:5:6:1045:336#0 1 1 76 52374 52449 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:5:40:1182:762#0 1 1 76 52375 52450 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:7:45:1790:2027#0 1 1 76 52375 52450 [TGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCT] HWI-EAS406:6:30:1244:1033#0 1 1 76 52378 52453 [TGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCT] HWI-EAS406:6:25:672:873#0 1 1 76 52380 52455 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:6:15:850:569#0 1 1 76 52381 52456 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:7:82:1566:1600#0 1 1 76 52381 52456 [TCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTAC] HWI-EAS406:5:96:993:668#0 1 1 76 52382 52457 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:5:1335:234#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:8:634:1148#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:48:1364:606#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:83:286:788#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:6:46:1265:853#0 1 1 76 52383 52458 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:6:97:1422:276#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:30:1373:1336#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:91:1638:634#0 1 1 76 52384 52459 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:6:30:1107:1555#0 1 1 76 52385 52460 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:7:62:403:725#0 1 1 76 52385 52460 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:6:97:210:575#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:8:768:1918#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:18:744:577#0 1 1 76 52389 52464 [TGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGAC] HWI-EAS406:6:12:1033:288#0 1 1 76 52390 52465 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:44:1286:914#0 1 1 76 52391 52466 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:99:75:238#0 1 1 76 52391 52466 [CTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCC] HWI-EAS406:7:25:1534:1288#0 1 1 76 52393 52468 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:5:92:1021:315#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:6:22:939:1557#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:7:42:1700:1551#0 1 1 76 52395 52470 [AAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATC] HWI-EAS406:5:99:281:1040#0 1 1 76 52396 52471 [TCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTAC] HWI-EAS406:5:22:934:1120#0 1 1 76 52401 52476 [CAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACT] HWI-EAS406:6:72:438:93#0 1 1 76 52402 52477 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:5:44:953:153#0 1 1 76 52404 52479 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:7:92:1274:1315#0 1 1 76 52404 52479 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:13:34:1242#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:85:208:1122#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:7:43:587:413#0 1 1 76 52406 52481 [TATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGA] HWI-EAS406:6:47:845:736#0 1 1 76 52407 52482 [TTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATG] HWI-EAS406:7:90:897:1890#0 1 1 76 52409 52484 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:5:50:917:1976#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:6:46:1501:1311#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:35:1049:1828#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:91:943:1527#0 1 1 76 52410 52485 [CCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGAC] HWI-EAS406:5:79:515:1833#0 1 1 76 52411 52486 [CCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACT] HWI-EAS406:6:53:1426:1923#0 1 1 76 52412 52487 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:4:316:253#0 1 1 76 52413 52488 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:26:157:281#0 1 1 76 52413 52488 [TTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCA] HWI-EAS406:5:69:281:1963#0 1 1 76 52415 52490 [TCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAA] HWI-EAS406:5:26:250:604#0 1 1 76 52416 52491 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:33:965:904#0 1 1 76 52418 52493 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:34:525:990#0 1 1 76 52418 52493 [CTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAA] HWI-EAS406:7:88:734:166#0 1 1 76 52419 52494 [TTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAG] HWI-EAS406:7:36:631:1873#0 1 1 76 52421 52496 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:12:1159:384#0 1 1 76 52422 52497 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:83:1161:1426#0 1 1 76 52422 52497 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:6:90:771:1361#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:41:910:1083#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:70:99:1689#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:77:1174:839#0 1 1 76 52423 52498 [GGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT] HWI-EAS406:7:63:1480:724#0 1 1 76 52425 52500 [GGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTC] HWI-EAS406:7:77:1453:1511#0 1 1 76 52426 52501 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:6:26:1732:1025#0 1 1 76 52427 52502 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:7:97:947:1880#0 1 1 76 52427 52502 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:6:35:171:1900#0 1 1 76 52428 52503 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:7:88:334:545#0 1 1 76 52428 52503 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:5:66:1234:1609#0 1 1 76 52429 52504 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:7:92:1680:921#0 1 1 76 52429 52504 [AAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGG] HWI-EAS406:7:52:1570:713#0 1 1 76 52430 52505 [AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGA] HWI-EAS406:5:32:715:488#0 1 1 76 52431 52506 [GGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAG] HWI-EAS406:5:9:811:1156#0 1 1 76 52432 52507 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:45:1657:1532#0 1 1 76 52435 52510 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:98:1786:481#0 1 1 76 52435 52510 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:5:68:760:968#0 1 1 76 52436 52511 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:6:68:1440:1647#0 1 1 76 52436 52511 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:6:46:903:1877#0 1 1 76 52437 52512 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:7:19:367:1436#0 1 1 76 52437 52512 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:5:66:28:1446#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:6:34:464:783#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:7:15:604:1090#0 1 1 76 52438 52513 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:13:348:1033#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:87:1295:1803#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:7:64:1047:978#0 1 1 76 52439 52514 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:5:16:182:749#0 1 1 76 52440 52515 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:6:24:199:363#0 1 1 76 52440 52515 [GTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTC] HWI-EAS406:6:16:164:1853#0 1 1 76 52441 52516 [TGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCT] HWI-EAS406:5:43:513:1459#0 1 1 76 52442 52517 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:6:21:1418:1301#0 1 1 76 52443 52518 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:7:70:905:646#0 1 1 76 52443 52518 [GGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCT] HWI-EAS406:6:35:1341:1497#0 1 1 76 52444 52519 [GAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTA] HWI-EAS406:6:28:1743:1594#0 1 1 76 52445 52520 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:5:6:112:390#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:6:24:879:466#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:7:73:1724:1685#0 1 1 76 52446 52521 [AGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTC] HWI-EAS406:7:94:1324:697#0 1 1 76 52449 52524 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:5:11:1687:764#0 1 1 76 52450 52525 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:7:38:116:123#0 1 1 76 52450 52525 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:40:1410:892#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:76:340:1910#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:36:364:1516#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:70:1047:873#0 1 1 76 52451 52526 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:74:787:283#0 1 1 76 52452 52527 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:89:834:1558#0 1 1 76 52452 52527 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:49:1334:1952#0 1 1 76 52453 52528 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:65:263:1491#0 1 1 76 52453 52528 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:5:78:957:1758#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:30:646:977#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:50:1090:503#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:7:43:158:1802#0 1 1 76 52454 52529 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:13:446:1928#0 1 1 76 52456 52531 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:83:1509:904#0 1 1 76 52456 52531 [CCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTG] HWI-EAS406:6:18:602:671#0 1 1 76 52457 52532 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:5:69:1041:132#0 1 1 76 52458 52533 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:6:86:1678:830#0 1 1 76 52458 52533 [CAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCT] HWI-EAS406:6:76:425:734#0 1 1 76 52459 52534 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1369:1448#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1370:1450#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:15:386:1653#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:45:1743:1797#0 1 1 76 52460 52535 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:5:63:157:339#0 1 1 76 52461 52536 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:6:99:151:1752#0 1 1 76 52461 52536 [TGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAG] HWI-EAS406:5:21:74:623#0 1 1 76 52462 52537 [GACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGC] HWI-EAS406:7:3:1765:1463#0 1 1 76 52463 52538 [ACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCT] HWI-EAS406:5:100:867:1403#0 1 1 76 52464 52539 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:5:21:1694:986#0 1 1 76 52465 52540 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:6:23:243:1026#0 1 1 76 52465 52540 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:6:73:769:554#0 1 1 76 52466 52541 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:7:33:333:934#0 1 1 76 52466 52541 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:5:34:80:1647#0 1 1 76 52467 52542 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:7:18:104:733#0 1 1 76 52467 52542 [CATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGA] HWI-EAS406:7:71:1068:1574#0 1 1 76 52468 52543 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:50:1106:1240#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:58:316:1761#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:7:59:96:812#0 1 1 76 52469 52544 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:47:1287:1406#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:68:273:853#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:6:71:678:999#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:7:66:511:931#0 1 1 76 52470 52545 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:6:27:1712:1795#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:43:690:304#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:75:43:1636#0 1 1 76 52471 52546 [ACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACG] HWI-EAS406:7:31:1226:1513#0 1 1 76 52472 52547 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:5:67:1617:965#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:56:1266:96#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:74:1656:109#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:7:2:273:624#0 1 1 76 52473 52548 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:2:443:921#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:66:1335:1233#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:6:94:1634:1213#0 1 1 76 52474 52549 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:5:24:1147:1318#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:6:99:931:988#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:42:443:715#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:82:1415:1808#0 1 1 76 52475 52550 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:18:662:1862#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:26:691:1840#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:60:428:951#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:83:245:1659#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:6:32:791:1173#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:51:376:736#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:70:543:785#0 1 1 76 52476 52551 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:14:1386:1596#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:51:706:494#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:81:325:1398#0 1 1 76 52477 52552 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:5:34:122:1746#0 1 1 76 52478 52553 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:6:95:1264:1695#0 1 1 76 52478 52553 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:10:844:278#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:73:274:1502#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:7:43:327:1656#0 1 1 76 52479 52554 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:72:940:210#0 1 1 76 52480 52555 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:74:282:1963#0 1 1 76 52480 52555 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:41:1127:1992#0 1 1 76 52481 52556 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:74:253:671#0 1 1 76 52481 52556 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:6:74:1612:1102#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:15:103:280#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:28:942:1576#0 1 1 76 52482 52557 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:30:1082:1249#0 1 1 76 52483 52558 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:90:436:1780#0 1 1 76 52483 52558 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:10:964:478#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:21:804:471#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:6:37:1646:747#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:7:12:1579:1295#0 1 1 76 52484 52559 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:5:70:1191:63#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:32:1484:542#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:93:690:1159#0 1 1 76 52485 52560 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:88:794:359#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:95:1262:1246#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:6:11:608:389#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:7:7:665:1469#0 1 1 76 52487 52562 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:6:51:1748:924#0 1 1 76 52488 52563 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:7:38:312:1700#0 1 1 76 52488 52563 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:5:66:785:1132#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:6:48:1563:1761#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:31:879:269#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:68:1429:1697#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:70:1178:1056#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:98:194:426#0 1 1 76 52489 52564 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:18:834:2002#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:96:777:523#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:6:19:1451:79#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:9:796:694#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:45:1281:1591#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:72:162:2022#0 1 1 76 52490 52565 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:5:8:524:330#0 1 1 76 52491 52566 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:7:72:115:1689#0 1 1 76 52491 52566 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:6:83:1575:1953#0 1 1 76 52492 52567 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:7:16:697:657#0 1 1 76 52492 52567 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:5:57:1336:1073#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:878:959#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:1740:1330#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:32:1710:799#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:44:910:1817#0 1 1 76 52493 52568 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:5:13:1589:1763#0 1 1 76 52494 52569 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:7:62:164:886#0 1 1 76 52494 52569 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:28:1334:1780#0 1 1 76 52495 52570 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:57:682:1761#0 1 1 76 52495 52570 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:6:91:1101:1030#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:64:1205:794#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:78:1109:1#0 1 1 76 52496 52571 [CATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAA] HWI-EAS406:6:49:949:577#0 1 1 76 52497 52572 [ATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAAC] HWI-EAS406:5:63:1417:785#0 1 1 76 52498 52573 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:51:1518:1187#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:70:521:909#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:73:559:537#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:98:1445:897#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:8:1630:621#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:18:1287:928#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:35:659:1510#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:76:1054:1173#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:91:153:1178#0 1 1 76 52499 52574 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:29:1504:889#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:47:876:1309#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:51:1240:1263#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:7:3:329:1926#0 1 1 76 52500 52575 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:5:9:665:754#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:6:79:1515:1769#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:7:5:321:1398#0 1 1 76 52501 52576 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:10:448:847#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:84:939:302#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:6:4:605:946#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:10:1155:1736#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:35:1593:1354#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:90:1553:1930#0 1 1 76 52502 52577 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:5:97:42:1409#0 1 1 76 52503 52578 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:6:72:374:36#0 1 1 76 52503 52578 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:1:363:555#0 1 1 76 52504 52579 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:67:457:2017#0 1 1 76 52504 52579 [GAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAG] HWI-EAS406:7:96:993:1666#0 1 1 76 52505 52580 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:22:214:325#0 1 1 76 52506 52581 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:82:789:903#0 1 1 76 52506 52581 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:5:74:1338:1894#0 1 1 76 52507 52582 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:7:30:366:836#0 1 1 76 52507 52582 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:8:749:1123#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:53:88:1848#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:3:1646:1866#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:29:354:1197#0 1 1 76 52508 52583 [GTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTC] HWI-EAS406:6:15:1327:1024#0 1 1 76 52510 52585 [TTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCA] HWI-EAS406:5:98:1669:1163#0 1 1 76 52511 52586 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:13:588:1428#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:81:305:252#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:94:711:1778#0 1 1 76 52512 52587 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:5:72:446:1078#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:6:33:92:1092#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:7:66:493:314#0 1 1 76 52513 52588 [TTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTG] HWI-EAS406:7:8:360:1468#0 1 1 76 52514 52589 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:5:55:629:1181#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:10:957:369#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:63:1404:1267#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:67:377:1457#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:93:77:1511#0 1 1 76 52515 52590 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:8:919:1857#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:45:1692:468#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:72:1250:436#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:7:22:875:178#0 1 1 76 52516 52591 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:5:36:1193:1569#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:6:59:1446:981#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:7:33:864:49#0 1 1 76 52517 52592 [CTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGC] HWI-EAS406:6:75:1268:559#0 1 1 76 52518 52593 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:13:887:1017#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:77:991:1540#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:33:832:140#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:77:1261:1245#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:7:35:607:1366#0 1 1 76 52519 52594 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:5:47:873:1758#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:23:1537:1227#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1564:1847#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1731:835#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:61:1436:1032#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:79:913:1653#0 1 1 76 52520 52595 [CTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTG] HWI-EAS406:6:38:59:951#0 1 1 76 52521 52596 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:25:1507:1261#0 1 1 76 52522 52597 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:29:1214:1944#0 1 1 76 52522 52597 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:5:67:86:578#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:6:42:1774:1442#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:1:189:1556#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:10:1412:914#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:17:97:955#0 1 1 76 52524 52599 [AAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAG] HWI-EAS406:5:69:799:1623#0 1 1 76 52525 52600 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:35:1168:776#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:76:318:325#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:92:295:1460#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:6:26:712:900#0 1 1 76 52526 52601 [GAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAG] HWI-EAS406:6:89:257:1369#0 1 1 76 52527 52602 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:12:1206:1252#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:95:1686:1754#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:6:13:1570:968#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:7:36:769:1869#0 1 1 76 52528 52603 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:53:432:995#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:934:508#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:1447:59#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:7:92:513:1466#0 1 1 76 52529 52604 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:6:27:1121:1352#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:28:1475:1019#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:86:1641:7#0 1 1 76 52530 52605 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:6:25:1093:266#0 1 1 76 52531 52606 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:7:86:1284:1345#0 1 1 76 52531 52606 [GCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCA] HWI-EAS406:6:6:345:1154#0 1 1 76 52532 52607 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:62:493:202#0 1 1 76 52533 52608 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:88:725:714#0 1 1 76 52533 52608 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:12:1673:1480#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:20:46:301#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:42:1276:1476#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:7:73:376:1496#0 1 1 76 52534 52609 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:8:1375:1270#0 1 1 76 52535 52610 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:71:410:514#0 1 1 76 52535 52610 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:24:1366:388#0 1 1 76 52536 52611 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:33:223:1151#0 1 1 76 52536 52611 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:59:1075:1577#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:72:1351:1858#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:7:24:1725:638#0 1 1 76 52537 52612 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:6:79:313:934#0 1 1 76 52538 52613 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:7:87:1208:82#0 1 1 76 52538 52613 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:12:1396:1654#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:26:729:915#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:6:65:1510:1944#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:7:71:1744:1427#0 1 1 76 52539 52614 [GAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTAC] HWI-EAS406:5:13:538:853#0 1 1 76 52540 52615 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:5:25:1344:1201#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:23:1678:1177#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:71:97:1960#0 1 1 76 52541 52616 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:5:55:574:1991#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:6:79:1392:1059#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:7:29:1737:689#0 1 1 76 52542 52617 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:35:1523:1128#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:68:848:1372#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:7:82:274:1527#0 1 1 76 52543 52618 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:8:1602:1902#0 1 1 76 52544 52619 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:93:165:1467#0 1 1 76 52544 52619 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:26:1215:168#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:45:1150:1600#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:6:96:169:645#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:7:6:944:1625#0 1 1 76 52545 52620 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:5:76:1228:1139#0 1 1 76 52546 52621 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:7:68:484:916#0 1 1 76 52546 52621 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:5:59:565:1459#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:6:1459:340#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:77:1461:267#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:93:108:1063#0 1 1 76 52547 52622 [AGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCA] HWI-EAS406:5:95:924:1921#0 1 1 76 52548 52623 [GATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAA] HWI-EAS406:7:13:1035:1167#0 1 1 76 52549 52624 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:2:478:1202#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:80:1169:1125#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:90:1546:929#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:6:1:1764:573#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:7:63:671:1580#0 1 1 76 52550 52625 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:63:1087:724#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:71:1490:1081#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:6:364:512#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:98:1579:1040#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:25:655:1303#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:49:1462:290#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:61:491:22#0 1 1 76 52551 52626 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:56:87:1755#0 1 1 76 52552 52627 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:57:91:1117#0 1 1 76 52552 52627 [TCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCC] HWI-EAS406:6:63:377:361#0 1 1 76 52553 52628 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:41:1439:1817#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:76:350:1040#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:80:1498:578#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:7:98:180:949#0 1 1 76 52554 52629 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:5:51:1261:274#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:6:67:361:133#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:7:61:56:966#0 1 1 76 52555 52630 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:5:1159:616#0 1 1 76 52556 52631 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:66:83:1138#0 1 1 76 52556 52631 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:42:1311:1327#0 1 1 76 52557 52632 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:59:832:1813#0 1 1 76 52557 52632 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:40:532:318#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:84:807:560#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:7:61:992:1593#0 1 1 76 52559 52634 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:31:970:383#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:42:1351:1536#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:48:428:1071#0 1 1 76 52560 52635 [CAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATG] HWI-EAS406:6:48:1577:1480#0 1 1 76 52562 52637 [ACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGC] HWI-EAS406:7:15:1612:1112#0 1 1 76 52564 52639 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:49:1261:547#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:73:1762:1319#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:79:1561:507#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:98:1341:624#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:7:53:1535:371#0 1 1 76 52565 52640 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:5:54:400:458#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:6:67:510:1693#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:26:1299:1893#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:68:216:206#0 1 1 76 52566 52641 [GAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTT] HWI-EAS406:5:59:34:1592#0 1 1 76 52567 52642 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:5:16:972:45#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:11:371:1927#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:22:1573:1772#0 1 1 76 52568 52643 [AGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTC] HWI-EAS406:7:4:166:1389#0 1 1 76 52569 52644 [GAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCT] HWI-EAS406:6:57:1119:1514#0 1 1 76 52570 52645 [AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTA] HWI-EAS406:7:34:1780:1208#0 1 1 76 52571 52646 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:5:79:1307:885#0 1 1 76 52572 52647 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:6:28:1476:1985#0 1 1 76 52572 52647 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:5:89:602:1500#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:6:61:350:1908#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:7:99:1709:1108#0 1 1 76 52573 52648 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:6:39:1301:1592#0 1 1 76 52576 52651 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:7:93:355:996#0 1 1 76 52576 52651 [AAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAG] HWI-EAS406:7:44:589:1076#0 1 1 76 52578 52653 [CTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTA] HWI-EAS406:7:66:567:977#0 1 1 76 52582 52657 [AGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGA] HWI-EAS406:7:64:1507:1368#0 1 1 76 52586 52661 [TGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGC] HWI-EAS406:7:52:1280:1062#0 1 1 76 52588 52663 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:22:795:1941#0 1 1 76 52589 52664 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:26:284:1360#0 1 1 76 52589 52664 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:5:43:722:1079#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:5:111:1769#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:39:680:1003#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:7:66:210:1927#0 1 1 76 52590 52665 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:5:4:82:684#0 1 1 76 52591 52666 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:6:31:1437:1285#0 1 1 76 52591 52666 [CTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTC] HWI-EAS406:6:68:737:1957#0 1 1 76 52594 52669 [GGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTA] HWI-EAS406:7:43:1317:534#0 1 1 76 52596 52671 [GGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTAC] HWI-EAS406:7:18:1662:381#0 1 1 76 52597 52672 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:5:71:466:482#0 1 1 76 52600 52675 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:6:60:840:1286#0 1 1 76 52600 52675 [GATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGG] HWI-EAS406:6:54:1094:829#0 1 1 76 52602 52677 [ATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGT] HWI-EAS406:6:65:1104:543#0 1 1 76 52603 52678 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:3:262:446#0 1 1 76 52605 52680 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:99:1259:1454#0 1 1 76 52605 52680 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:5:64:878:239#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:6:2:290:554#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:7:71:1076:1486#0 1 1 76 52606 52681 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:5:80:232:812#0 1 1 76 52607 52682 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:7:98:704:841#0 1 1 76 52607 52682 [AGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCT] HWI-EAS406:7:8:1752:1537#0 1 1 76 52608 52683 [GGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTC] HWI-EAS406:7:79:360:885#0 1 1 76 52610 52685 [GCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCC] HWI-EAS406:7:74:1334:1841#0 1 1 76 52611 52686 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:5:84:1424:1849#0 1 1 76 52612 52687 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:6:67:1481:1218#0 1 1 76 52612 52687 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:28:1421:1393#0 1 1 76 52613 52688 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:35:949:1809#0 1 1 76 52613 52688 [AAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTA] HWI-EAS406:7:19:1321:1012#0 1 1 76 52617 52692 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:30:762:1326#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:84:672:1802#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:6:87:177:1204#0 1 1 76 52618 52693 [GCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACA] HWI-EAS406:5:84:1245:399#0 1 1 76 52619 52694 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:22:1430:399#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:73:930:335#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:7:27:1395:1095#0 1 1 76 52620 52695 [TCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGA] HWI-EAS406:6:25:1531:1308#0 1 1 76 52621 52696 [CAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAG] HWI-EAS406:5:60:329:1295#0 1 1 76 52622 52697 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1399:1567#0 1 1 76 52623 52698 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1401:1568#0 1 1 76 52623 52698 [CACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACT] HWI-EAS406:5:55:1359:18#0 1 1 76 52629 52704 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:5:60:1059:1422#0 1 1 76 52630 52705 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:6:4:537:1682#0 1 1 76 52630 52705 [CCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGG] HWI-EAS406:6:68:446:775#0 1 1 76 52631 52706 [CCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGAT] HWI-EAS406:5:77:1513:381#0 1 1 76 52633 52708 [CATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATA] HWI-EAS406:6:32:1019:1170#0 1 1 76 52634 52709 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:27:1235:1180#0 1 1 76 52635 52710 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:64:181:772#0 1 1 76 52635 52710 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:38:595:2023#0 1 1 76 52636 52711 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:67:901:893#0 1 1 76 52636 52711 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:6:11:874:891#0 1 1 76 52638 52713 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:7:73:1469:541#0 1 1 76 52638 52713 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:64:441:449#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:68:357:988#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:95:433:1083#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:7:9:1061:1695#0 1 1 76 52639 52714 [TTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTA] HWI-EAS406:7:9:910:60#0 1 1 76 52640 52715 [TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAG] HWI-EAS406:6:53:370:1905#0 1 1 76 52641 52716 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:28:140:1966#0 1 1 76 52646 52721 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:37:692:1780#0 1 1 76 52646 52721 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:5:47:548:1945#0 1 1 76 52647 52722 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:7:77:851:1718#0 1 1 76 52647 52722 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:5:13:1567:1317#0 1 1 76 52648 52723 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:6:10:96:380#0 1 1 76 52648 52723 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:5:76:738:1384#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:35:1399:224#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:94:182:673#0 1 1 76 52650 52725 [GAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTC] HWI-EAS406:6:22:1505:677#0 1 1 76 52651 52726 [AGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCT] HWI-EAS406:6:13:813:876#0 1 1 76 52652 52727 [GCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTT] HWI-EAS406:5:61:462:1645#0 1 1 76 52653 52728 [TTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCT] HWI-EAS406:7:85:795:1004#0 1 1 76 52655 52730 [TACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTT] HWI-EAS406:7:56:851:23#0 1 1 76 52656 52731 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:5:6:1008:413#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:6:51:585:982#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:7:23:336:1844#0 1 1 76 52657 52732 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:5:16:411:1866#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:20:546:48#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:24:1344:1284#0 1 1 76 52658 52733 [TGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGG] HWI-EAS406:5:26:156:1919#0 1 1 76 52659 52734 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:5:19:1560:1097#0 1 1 76 52660 52735 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:7:16:1163:1496#0 1 1 76 52660 52735 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:27:433:1044#0 1 1 76 52661 52736 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:65:1044:297#0 1 1 76 52661 52736 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:66:824:745#0 1 1 76 52662 52737 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:72:187:1085#0 1 1 76 52662 52737 [CACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGA] HWI-EAS406:7:36:1290:958#0 1 1 76 52663 52738 [ACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAA] HWI-EAS406:7:81:1719:703#0 1 1 76 52664 52739 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:12:1322:1927#0 1 1 76 52665 52740 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:74:1281:286#0 1 1 76 52665 52740 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:5:58:49:176#0 1 1 76 52666 52741 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:6:59:1083:530#0 1 1 76 52666 52741 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:38:80:785#0 1 1 76 52669 52744 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:91:1656:759#0 1 1 76 52669 52744 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:25:719:1348#0 1 1 76 52670 52745 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:32:814:32#0 1 1 76 52670 52745 [ACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGA] HWI-EAS406:7:1:1153:1584#0 1 1 76 52671 52746 [CCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAG] HWI-EAS406:5:14:755:1230#0 1 1 76 52672 52747 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:8:1435:965#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:55:660:4#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:7:19:932:1420#0 1 1 76 52674 52749 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:6:22:1593:317#0 1 1 76 52679 52754 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:7:44:1033:557#0 1 1 76 52679 52754 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:5:61:27:362#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:6:96:1530:676#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:47:1188:206#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:62:257:2014#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:100:1432:1531#0 1 1 76 52680 52755 [TCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAA] HWI-EAS406:7:63:827:1142#0 1 1 76 52681 52756 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:5:71:19:953#0 1 1 76 52682 52757 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:6:90:980:1734#0 1 1 76 52682 52757 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:75:1453:957#0 1 1 76 52683 52758 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:90:1220:1465#0 1 1 76 52683 52758 [TCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAG] HWI-EAS406:6:72:232:113#0 1 1 76 52684 52759 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:6:74:1465:21#0 1 1 76 52685 52760 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:7:35:1727:756#0 1 1 76 52685 52760 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:20:1116:1667#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:75:1545:1205#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:6:75:345:808#0 1 1 76 52686 52761 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:6:39:902:457#0 1 1 76 52687 52762 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:7:49:1144:1840#0 1 1 76 52687 52762 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:5:89:719:1932#0 1 1 76 52688 52763 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:7:49:1562:29#0 1 1 76 52688 52763 [AGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGT] HWI-EAS406:7:89:1328:1251#0 1 1 76 52689 52764 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:8:652:1592#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:9:1617:799#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:7:57:304:1400#0 1 1 76 52691 52766 [ACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGA] HWI-EAS406:5:74:1597:1977#0 1 1 76 52692 52767 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:6:3:1436:826#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:67:916:1425#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:82:300:1277#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:95:284:231#0 1 1 76 52693 52768 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:5:49:1356:1604#0 1 1 76 52695 52770 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:7:84:460:1196#0 1 1 76 52695 52770 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:5:31:397:693#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:48:789:839#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:78:308:217#0 1 1 76 52696 52771 [CCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACAT] HWI-EAS406:5:92:833:2028#0 1 1 76 52698 52773 [CAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATG] HWI-EAS406:7:92:954:996#0 1 1 76 52699 52774 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:5:65:165:1131#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:36:691:7#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:73:1136:500#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:96:1118:976#0 1 1 76 52700 52775 [ACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTA] HWI-EAS406:6:84:330:461#0 1 1 76 52702 52777 [CTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAA] HWI-EAS406:6:57:756:1865#0 1 1 76 52703 52778 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:5:85:86:1811#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:34:1489:1055#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:87:1313:1321#0 1 1 76 52704 52779 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:5:64:512:1642#0 1 1 76 52705 52780 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:7:17:769:337#0 1 1 76 52705 52780 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:5:66:981:1355#0 1 1 76 52706 52781 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:6:95:1395:605#0 1 1 76 52706 52781 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:6:54:371:1133#0 1 1 76 52709 52784 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:7:85:356:1379#0 1 1 76 52709 52784 [CAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGA] HWI-EAS406:5:33:1446:179#0 1 1 76 52710 52785 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:5:44:1170:794#0 1 1 76 52711 52786 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:7:100:474:1208#0 1 1 76 52711 52786 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:54:1730:327#0 1 1 76 52713 52788 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:90:27:1950#0 1 1 76 52713 52788 [CAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTC] HWI-EAS406:7:20:1428:1247#0 1 1 76 52717 52792 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:5:26:209:353#0 1 1 76 52718 52793 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:6:11:1176:1783#0 1 1 76 52718 52793 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:8:1579:696#0 1 1 76 52719 52794 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:38:1393:205#0 1 1 76 52719 52794 [GGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACA] HWI-EAS406:7:65:96:1531#0 1 1 76 52721 52796 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:5:69:547:743#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:6:28:1411:1934#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:7:7:1352:1238#0 1 1 76 52724 52799 [TCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGG] HWI-EAS406:6:68:1612:781#0 1 1 76 52725 52800 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:29:562:58#0 1 1 76 52730 52805 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:75:1431:401#0 1 1 76 52730 52805 [GGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACG] HWI-EAS406:5:6:754:1118#0 1 1 76 52733 52808 [GGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGA] HWI-EAS406:5:71:373:1022#0 1 1 76 52734 52809 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:20:289:1552#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:92:213:665#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:7:54:1760:1267#0 1 1 76 52735 52810 [AGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACA] HWI-EAS406:7:48:1621:1285#0 1 1 76 52736 52811 [AACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGA] HWI-EAS406:7:57:367:1568#0 1 1 76 52738 52813 [ACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAG] HWI-EAS406:6:57:1192:31#0 1 1 76 52739 52814 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:6:100:491:1058#0 1 1 76 52740 52815 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:7:12:213:1715#0 1 1 76 52740 52815 [GAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCA] HWI-EAS406:5:10:1671:1999#0 1 1 76 52742 52817 [AGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAG] HWI-EAS406:7:31:820:772#0 1 1 76 52743 52818 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:18:1108:1468#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:93:973:1263#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:6:54:325:1697#0 1 1 76 52747 52822 [GATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAA] HWI-EAS406:7:63:444:1270#0 1 1 76 52748 52823 [GCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAG] HWI-EAS406:5:18:996:2006#0 1 1 76 52751 52826 [AAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGA] HWI-EAS406:6:56:1047:1693#0 1 1 76 52755 52830 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:6:70:1271:681#0 1 1 76 52757 52832 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:7:89:353:1220#0 1 1 76 52757 52832 [GGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAG] HWI-EAS406:7:41:92:805#0 1 1 76 52762 52837 [GTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGA] HWI-EAS406:5:29:1681:802#0 1 1 76 52763 52838 [CAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGG] HWI-EAS406:7:36:675:850#0 1 1 76 52768 52843 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:601:809#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:820:932#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:6:27:885:1266#0 1 1 76 52769 52844 [CATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAA] HWI-EAS406:6:62:569:1444#0 1 1 76 52771 52846 [ATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAG] HWI-EAS406:7:30:95:1595#0 1 1 76 52772 52847 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:18:1770:316#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:55:911:1113#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:7:29:263:253#0 1 1 76 52773 52848 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:5:77:871:893#0 1 1 76 52774 52849 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:6:16:1436:1900#0 1 1 76 52774 52849 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:5:4:859:1091#0 1 1 76 52775 52850 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:7:29:1141:1851#0 1 1 76 52775 52850 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:6:26:595:1371#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:40:1232:1393#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:89:1396:1026#0 1 1 76 52776 52851 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:6:2:1627:472#0 1 1 76 52777 52852 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:7:99:636:1603#0 1 1 76 52777 52852 [AAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCA] HWI-EAS406:7:77:177:1715#0 1 1 76 52778 52853 [AGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAA] HWI-EAS406:7:100:309:1438#0 1 1 76 52779 52854 [GCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGG] HWI-EAS406:6:21:1395:910#0 1 1 76 52787 52862 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:5:59:145:1175#0 1 1 76 52792 52867 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:6:14:1246:1693#0 1 1 76 52792 52867 [ACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAA] HWI-EAS406:7:77:1713:1632#0 1 1 76 52794 52869 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:5:39:548:1024#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:38:1520:842#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:40:347:1850#0 1 1 76 52801 52876 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:6:89:742:643#0 1 1 76 52805 52880 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:7:75:1154:839#0 1 1 76 52805 52880 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:5:78:754:459#0 1 1 76 52806 52881 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:6:1:384:1591#0 1 1 76 52806 52881 [ACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCAT] HWI-EAS406:7:22:1375:1195#0 1 1 76 52809 52884 [CAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATT] HWI-EAS406:5:1:1719:1033#0 1 1 76 52810 52885 [GAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGC] HWI-EAS406:6:90:835:1482#0 1 1 76 52812 52887 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:5:24:136:1541#0 1 1 76 52815 52890 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:6:65:1614:1321#0 1 1 76 52815 52890 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:5:51:377:1153#0 1 1 76 52818 52893 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:7:66:266:1654#0 1 1 76 52818 52893 [AACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCA] HWI-EAS406:6:60:351:367#0 1 1 76 52822 52897 [ATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGA] HWI-EAS406:5:90:750:261#0 1 1 76 52830 52905 [TAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAG] HWI-EAS406:7:24:564:704#0 1 1 76 52831 52906 [AAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGC] HWI-EAS406:7:36:1312:1239#0 1 1 76 52832 52907 [GCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAG] HWI-EAS406:7:62:1248:1996#0 1 1 76 52834 52909 [AGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGT] HWI-EAS406:7:74:1634:372#0 1 1 76 52841 52916 [GAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTT] HWI-EAS406:5:24:1213:1202#0 1 1 76 52843 52918 [AAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTG] HWI-EAS406:5:17:1388:1409#0 1 1 76 52844 52919 [AGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTT] HWI-EAS406:7:67:1179:690#0 1 1 76 52846 52921 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:6:73:723:696#0 1 1 76 52849 52924 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:7:37:1631:1209#0 1 1 76 52849 52924 [ATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTA] HWI-EAS406:6:86:426:1963#0 1 1 76 52850 52925 [CAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAAC] HWI-EAS406:6:95:1476:426#0 1 1 76 52852 52927 [TTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAG] HWI-EAS406:6:67:1618:794#0 1 1 76 52858 52933 [TTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGC] HWI-EAS406:7:83:202:1767#0 1 1 76 52859 52934 [TGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCA] HWI-EAS406:7:68:1139:1819#0 1 1 76 52860 52935 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:6:68:1729:626#0 1 1 76 52863 52938 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:7:32:1013:1608#0 1 1 76 52863 52938 [GACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAG] HWI-EAS406:5:28:1506:37#0 1 1 76 52865 52940 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:5:15:1255:1708#0 1 1 76 52867 52942 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:7:81:1212:713#0 1 1 76 52867 52942 [AGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCC] HWI-EAS406:7:10:1250:1965#0 1 1 76 52869 52944 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:69:319:840#0 1 1 76 52874 52949 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:87:253:1053#0 1 1 76 52874 52949 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:45:113:1763#0 1 1 76 52878 52953 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:77:1188:580#0 1 1 76 52878 52953 [CTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCA] HWI-EAS406:5:5:491:1005#0 1 1 76 52880 52955 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:6:73:850:1573#0 1 1 76 52882 52957 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:7:82:431:428#0 1 1 76 52882 52957 [ATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATG] HWI-EAS406:6:78:691:1612#0 1 1 76 52883 52958 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:41:1719:1887#0 1 1 76 52884 52959 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:100:1346:1547#0 1 1 76 52884 52959 [TGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAG] HWI-EAS406:5:6:900:884#0 1 1 76 52885 52960 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:61:1086:1684#0 1 1 76 52886 52961 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:81:942:1767#0 1 1 76 52886 52961 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:5:769:2001#0 1 1 76 52888 52963 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:55:734:1718#0 1 1 76 52888 52963 [AAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAG] HWI-EAS406:7:84:1333:1560#0 1 1 76 52891 52966 [AAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGG] HWI-EAS406:6:18:443:1002#0 1 1 76 52892 52967 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:6:84:1247:1172#0 1 1 76 52893 52968 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:7:4:304:1492#0 1 1 76 52893 52968 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:11:1749:1681#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:31:1333:1527#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:63:113:503#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:80:1392:481#0 1 1 76 52894 52969 [GCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTT] HWI-EAS406:7:20:338:25#0 1 1 76 52895 52970 [CAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTT] HWI-EAS406:5:38:934:1502#0 1 1 76 52896 52971 [AACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTG] HWI-EAS406:5:85:776:1725#0 1 1 76 52897 52972 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:6:13:1228:1046#0 1 1 76 52898 52973 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:7:46:1190:1221#0 1 1 76 52898 52973 [CAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAG] HWI-EAS406:6:63:305:1144#0 1 1 76 52901 52976 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:6:48:1216:572#0 1 1 76 52902 52977 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:7:99:1265:274#0 1 1 76 52902 52977 [AGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGT] HWI-EAS406:6:11:1471:1239#0 1 1 76 52903 52978 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:20:1218:1653#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:100:1058:560#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:7:37:765:354#0 1 1 76 52904 52979 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:5:85:988:89#0 1 1 76 52907 52982 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:6:24:1088:1499#0 1 1 76 52907 52982 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:5:69:1278:1921#0 1 1 76 52908 52983 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:6:49:886:976#0 1 1 76 52908 52983 [GCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAG] HWI-EAS406:7:97:1262:733#0 1 1 76 52909 52984 [CTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGG] HWI-EAS406:7:80:873:1646#0 1 1 76 52910 52985 [TGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGA] HWI-EAS406:5:74:311:1222#0 1 1 76 52911 52986 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:2:1609:513#0 1 1 76 52912 52987 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:6:655:560#0 1 1 76 52912 52987 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:5:65:175:674#0 1 1 76 52914 52989 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:6:67:977:2#0 1 1 76 52914 52989 [TTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTG] HWI-EAS406:5:87:785:887#0 1 1 76 52917 52992 [TGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGT] HWI-EAS406:7:30:1447:1855#0 1 1 76 52918 52993 [GTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTT] HWI-EAS406:7:71:677:1038#0 1 1 76 52919 52994 [TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTC] HWI-EAS406:5:74:859:201#0 1 1 76 52921 52996 [TAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATC] HWI-EAS406:6:56:1319:796#0 1 1 76 52924 52999 [CTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAAC] HWI-EAS406:5:14:611:1579#0 1 1 76 52927 53002 [TCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACA] HWI-EAS406:7:38:1155:2035#0 1 1 76 52928 53003 [AAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACA] HWI-EAS406:7:8:283:983#0 1 1 76 52931 53006 [CAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATG] HWI-EAS406:7:25:45:1377#0 1 1 76 52934 53009 [AGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGG] HWI-EAS406:7:40:1449:1249#0 1 1 76 52935 53010 [GGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGT] HWI-EAS406:7:90:1220:1315#0 1 1 76 52936 53011 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:6:20:842:1693#0 1 1 76 52948 53023 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:7:76:1565:1995#0 1 1 76 52948 53023 [TCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGA] HWI-EAS406:7:59:1788:1538#0 1 1 76 52953 53028 [AGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCA] HWI-EAS406:6:20:1735:1047#0 1 1 76 52965 53040 [GTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTA] HWI-EAS406:6:94:939:1047#0 1 1 76 52968 53043 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:5:22:330:789#0 1 1 76 52979 53054 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:7:70:1669:163#0 1 1 76 52979 53054 [AGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAA] HWI-EAS406:6:34:1002:1940#0 1 1 76 52986 53061 [GTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAA] HWI-EAS406:7:22:1333:1659#0 1 1 76 52987 53062 [TGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATC] HWI-EAS406:7:71:625:1767#0 1 1 76 52989 53064 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:5:82:1551:1229#0 1 1 76 52990 53065 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:7:23:1642:1419#0 1 1 76 52990 53065 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:5:16:562:1965#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:6:34:665:833#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:7:70:203:1497#0 1 1 76 52991 53066 [GTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTA] HWI-EAS406:6:72:348:1278#0 1 1 76 52992 53067 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:10:766:1082#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:15:1036:645#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:70:488:482#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:97:1715:1971#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:7:17:1509:1035#0 1 1 76 52993 53068 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:5:86:82:1111#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:6:81:669:867#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:7:23:798:1374#0 1 1 76 52995 53070 [TCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAA] HWI-EAS406:6:9:928:223#0 1 1 76 52998 53073 [CAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAAC] HWI-EAS406:5:74:1187:1738#0 1 1 76 52999 53074 [AACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACA] HWI-EAS406:7:72:535:1762#0 1 1 76 53000 53075 [ACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAA] HWI-EAS406:6:67:691:451#0 1 1 76 53001 53076 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:6:10:1056:1388#0 1 1 76 53003 53078 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:7:67:1043:1053#0 1 1 76 53003 53078 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:26:1302:1511#0 1 1 76 53005 53080 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:96:1696:1630#0 1 1 76 53005 53080 [AATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAAC] HWI-EAS406:5:68:1329:1227#0 1 1 76 53006 53081 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:6:96:361:1171#0 1 1 76 53007 53082 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:7:66:1046:1538#0 1 1 76 53007 53082 [GTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAG] HWI-EAS406:6:5:1784:1359#0 1 1 76 53010 53085 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:6:85:984:1150#0 1 1 76 53013 53088 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:7:97:1335:1860#0 1 1 76 53013 53088 [CTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGC] HWI-EAS406:7:53:1507:1400#0 1 1 76 53014 53089 [ACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCC] HWI-EAS406:5:83:731:357#0 1 1 76 53019 53094 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:21:1623:1222#0 1 1 76 53020 53095 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:57:293:559#0 1 1 76 53020 53095 [AGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAG] HWI-EAS406:6:58:278:902#0 1 1 76 53025 53100 [AGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAA] HWI-EAS406:7:81:1340:993#0 1 1 76 53028 53103 [GCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAAC] HWI-EAS406:6:74:463:426#0 1 1 76 53029 53104 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:5:35:1464:1782#0 1 1 76 53032 53107 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:6:87:1247:611#0 1 1 76 53032 53107 [CTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAG] HWI-EAS406:6:76:1017:1131#0 1 1 76 53035 53110 [TTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGC] HWI-EAS406:6:33:1752:469#0 1 1 76 53036 53111 [TCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAA] HWI-EAS406:5:76:1166:1108#0 1 1 76 53038 53113 [ACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGG] HWI-EAS406:6:36:443:1615#0 1 1 76 53073 53148 [TGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCT] HWI-EAS406:6:59:1322:1397#0 1 1 76 53086 53161 [ATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGA] HWI-EAS406:7:89:825:731#0 1 1 76 53091 53166 [CGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAG] HWI-EAS406:6:77:994:1321#0 1 1 76 53094 53169 [CAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAG] HWI-EAS406:5:45:852:1913#0 1 1 76 53097 53172 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:6:10:326:468#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:56:1362:1475#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:72:1291:311#0 1 1 76 53108 53183 [AGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTG] HWI-EAS406:7:17:466:111#0 1 1 76 53113 53188 [TCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATC] HWI-EAS406:7:66:68:337#0 1 1 76 53122 53197 [TTGGAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCT] HWI-EAS406:6:82:241:1543#0 1 1 76 53198 53273 [GTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAA] HWI-EAS406:6:38:237:441#0 1 1 76 53217 53292 [GAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAAT] HWI-EAS406:7:19:1518:715#0 1 1 76 53219 53294 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:5:83:1397:1100#0 1 1 76 53220 53295 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:7:65:499:294#0 1 1 76 53220 53295 [GAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTC] HWI-EAS406:6:63:1490:915#0 1 1 76 53221 53296 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:5:59:1092:2030#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:6:47:258:1736#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:7:41:1735:1335#0 1 1 76 53222 53297 [AGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTC] HWI-EAS406:6:70:64:1370#0 1 1 76 53223 53298 [ACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACA] HWI-EAS406:7:6:486:803#0 1 1 76 53226 53301 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:5:52:1062:869#0 1 1 76 53229 53304 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:7:56:632:1389#0 1 1 76 53229 53304 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:6:85:1131:1902#0 1 1 76 53230 53305 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:7:12:938:467#0 1 1 76 53230 53305 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:17:718:33#0 1 1 76 53232 53307 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:61:110:1832#0 1 1 76 53232 53307 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:6:100:986:193#0 1 1 76 53234 53309 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:7:21:1696:587#0 1 1 76 53234 53309 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:20:380:87#0 1 1 76 53235 53310 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:42:431:1815#0 1 1 76 53235 53310 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:33:127:1815#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:96:508:870#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:7:52:798:712#0 1 1 76 53236 53311 [GAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTA] HWI-EAS406:5:56:1533:1579#0 1 1 76 53237 53312 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:5:72:1534:1868#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:6:30:1499:778#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:7:7:579:773#0 1 1 76 53238 53313 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:9:793:1263#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:58:1341:937#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:63:976:865#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:98:571:1639#0 1 1 76 53239 53314 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:8:1577:705#0 1 1 76 53240 53315 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:74:408:1585#0 1 1 76 53240 53315 [TGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGT] HWI-EAS406:7:99:179:769#0 1 1 76 53241 53316 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:29:408:1113#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:72:124:367#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:16:327:1812#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:59:789:1513#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:7:66:1416:1146#0 1 1 76 53242 53317 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:5:37:953:299#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:30:1613:1665#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:100:711:1721#0 1 1 76 53243 53318 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:5:7:38:1359#0 1 1 76 53244 53319 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:6:7:1476:1748#0 1 1 76 53244 53319 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:28:678:746#0 1 1 76 53245 53320 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:45:1088:583#0 1 1 76 53245 53320 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:5:43:1382:957#0 1 1 76 53248 53323 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:6:32:56:484#0 1 1 76 53248 53323 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:44:386:1988#0 1 1 76 53249 53324 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:78:14:1600#0 1 1 76 53249 53324 [ATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGA] HWI-EAS406:6:60:676:884#0 1 1 76 53253 53328 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:12:678:190#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:47:1560:929#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:76:1176:1214#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:84:1300:1222#0 1 1 76 53256 53331 [AGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCA] HWI-EAS406:6:71:506:1906#0 1 1 76 53259 53334 [TGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTT] HWI-EAS406:5:14:149:1789#0 1 1 76 53263 53338 [ATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC] HWI-EAS406:6:37:1358:195#0 1 1 76 53265 53340 [TGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCT] HWI-EAS406:7:26:892:1572#0 1 1 76 53266 53341 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:5:58:643:299#0 1 1 76 53268 53343 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:6:47:1677:1260#0 1 1 76 53268 53343 [AGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCA] HWI-EAS406:7:55:524:1341#0 1 1 76 53270 53345 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:6:5:673:143#0 1 1 76 53276 53351 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:7:38:1070:231#0 1 1 76 53276 53351 [TGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACT] HWI-EAS406:7:61:728:1124#0 1 1 76 53278 53353 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:6:94:67:550#0 1 1 76 53279 53354 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:7:25:1555:517#0 1 1 76 53279 53354 [CAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAAT] HWI-EAS406:5:26:1782:1487#0 1 1 76 53287 53362 [AACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATC] HWI-EAS406:7:99:1410:678#0 1 1 76 53288 53363 [ACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCG] HWI-EAS406:7:12:1549:1905#0 1 1 76 53289 53364 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:94:660:1298#0 1 1 76 53290 53365 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:99:486:564#0 1 1 76 53290 53365 [AAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCC] HWI-EAS406:7:6:1318:904#0 1 1 76 53291 53366 [ATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAG] HWI-EAS406:5:50:344:275#0 1 1 76 53293 53368 [CTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAA] HWI-EAS406:6:61:536:1994#0 1 1 76 53296 53371 [TCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAG] HWI-EAS406:6:96:1691:1669#0 1 1 76 53297 53372 [CACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGG] HWI-EAS406:6:53:756:1438#0 1 1 76 53298 53373 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:5:32:512:1543#0 1 1 76 53300 53375 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:6:43:1435:823#0 1 1 76 53300 53375 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:6:16:1107:1198#0 1 1 76 53301 53376 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:7:21:1350:1692#0 1 1 76 53301 53376 [CCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCT] HWI-EAS406:6:9:230:1428#0 1 1 76 53302 53377 [TGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTA] HWI-EAS406:7:72:258:511#0 1 1 76 53305 53380 [TCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTG] HWI-EAS406:5:33:1345:1342#0 1 1 76 53309 53384 [TACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGA] HWI-EAS406:6:37:614:157#0 1 1 76 53311 53386 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:5:12:1752:1462#0 1 1 76 53312 53387 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:6:95:1625:892#0 1 1 76 53312 53387 [AAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTG] HWI-EAS406:7:27:354:804#0 1 1 76 53318 53393 [GAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGAC] HWI-EAS406:6:70:639:1667#0 1 1 76 53320 53395 [AATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACC] HWI-EAS406:6:8:832:722#0 1 1 76 53321 53396 [TGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCC] HWI-EAS406:6:12:710:1058#0 1 1 76 53338 53413 [CTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCT] HWI-EAS406:5:68:1604:1414#0 1 1 76 53352 53427 [CAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGA] HWI-EAS406:5:91:987:915#0 1 1 76 53357 53432 [TCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGT] HWI-EAS406:6:5:1149:1954#0 1 1 76 53362 53437 [CTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTA] HWI-EAS406:5:60:619:1662#0 1 1 76 53378 53453 [CTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAA] HWI-EAS406:5:25:738:87#0 1 1 76 53391 53466 [ATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGA] HWI-EAS406:7:41:1398:1465#0 1 1 76 53400 53475 [CGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACA] HWI-EAS406:5:99:882:1541#0 1 1 76 53429 53504 [AAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATG] HWI-EAS406:5:76:867:129#0 1 1 76 53438 53513 [ACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTG] HWI-EAS406:6:2:219:1094#0 1 1 76 53446 53521 [TAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTT] HWI-EAS406:5:58:650:328#0 1 1 76 53452 53527 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:5:45:1430:1123#0 1 1 76 53453 53528 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:7:46:1727:1121#0 1 1 76 53453 53528 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:60:1355:1749#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:72:1061:265#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:7:64:701:178#0 1 1 76 53454 53529 [ACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATG] HWI-EAS406:6:66:935:30#0 1 1 76 53456 53531 [CCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGA] HWI-EAS406:7:90:175:1368#0 1 1 76 53457 53532 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:43:1033:1183#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:86:822:312#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:32:366:1628#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:34:1721:259#0 1 1 76 53459 53534 [ACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGA] HWI-EAS406:7:44:690:1265#0 1 1 76 53462 53537 [CAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATC] HWI-EAS406:5:67:1193:1073#0 1 1 76 53464 53539 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:8:155:1879#0 1 1 76 53465 53540 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:61:892:217#0 1 1 76 53465 53540 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:5:61:1148:844#0 1 1 76 53467 53542 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:6:35:343:246#0 1 1 76 53467 53542 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:5:53:944:1239#0 1 1 76 53468 53543 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:6:19:1066:506#0 1 1 76 53468 53543 [GCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACG] HWI-EAS406:6:10:1058:483#0 1 1 76 53471 53546 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:34:1558:316#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:82:902:561#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:49:1208:1985#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:55:1403:804#0 1 1 76 53473 53548 [AGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT] HWI-EAS406:6:67:1271:1581#0 1 1 76 53475 53550 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:26:1342:1423#0 1 1 76 53476 53551 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:59:1679:1352#0 1 1 76 53476 53551 [AACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTT] HWI-EAS406:6:40:298:405#0 1 1 76 53478 53553 [ACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTG] HWI-EAS406:7:40:1275:154#0 1 1 76 53479 53554 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:5:51:215:588#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:49:1215:1249#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:54:1111:713#0 1 1 76 53480 53555 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:5:58:471:1142#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:6:46:872:636#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:7:81:125:1639#0 1 1 76 53481 53556 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:6:64:68:1338#0 1 1 76 53483 53558 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:7:32:494:1816#0 1 1 76 53483 53558 [GAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGA] HWI-EAS406:7:37:986:1763#0 1 1 76 53486 53561 [AAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGAT] HWI-EAS406:6:60:434:400#0 1 1 76 53487 53562 [AGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATA] HWI-EAS406:7:72:380:1488#0 1 1 76 53488 53563 [GGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGT] HWI-EAS406:7:77:730:1986#0 1 1 76 53490 53565 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:38:1359:674#0 1 1 76 53491 53566 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:40:121:754#0 1 1 76 53491 53566 [GCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAG] HWI-EAS406:6:56:1672:1286#0 1 1 76 53495 53570 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:27:541:285#0 1 1 76 53497 53572 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:67:1267:726#0 1 1 76 53497 53572 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:58:1582:877#0 1 1 76 53498 53573 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:99:799:1909#0 1 1 76 53498 53573 [TCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAA] HWI-EAS406:5:34:903:1119#0 1 1 76 53499 53574 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:5:47:976:760#0 1 1 76 53500 53575 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:6:100:1728:1491#0 1 1 76 53500 53575 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:46:1677:934#0 1 1 76 53501 53576 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:65:1706:1307#0 1 1 76 53501 53576 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:5:40:1473:1219#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:25:1767:760#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:76:655:1635#0 1 1 76 53502 53577 [ATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTA] HWI-EAS406:5:82:1406:593#0 1 1 76 53504 53579 [AGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAA] HWI-EAS406:5:45:1177:936#0 1 1 76 53506 53581 [GATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAG] HWI-EAS406:6:99:1613:1584#0 1 1 76 53507 53582 [ATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGG] HWI-EAS406:5:60:546:1031#0 1 1 76 53508 53583 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:5:28:1177:1079#0 1 1 76 53510 53585 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:6:89:545:1190#0 1 1 76 53510 53585 [ATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAA] HWI-EAS406:5:46:927:1690#0 1 1 76 53511 53586 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:39:1424:980#0 1 1 76 53513 53588 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:48:1636:1321#0 1 1 76 53513 53588 [AAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGT] HWI-EAS406:7:72:421:1226#0 1 1 76 53514 53589 [GTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTG] HWI-EAS406:6:76:763:468#0 1 1 76 53516 53591 [TGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGA] HWI-EAS406:6:28:363:848#0 1 1 76 53520 53595 [TTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGA] HWI-EAS406:6:50:1325:1030#0 1 1 76 53523 53598 [TTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAA] HWI-EAS406:5:60:752:516#0 1 1 76 53526 53601 [ATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAA] HWI-EAS406:7:57:1111:208#0 1 1 76 53529 53604 [TGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAG] HWI-EAS406:7:58:1186:1368#0 1 1 76 53530 53605 [AGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGT] HWI-EAS406:6:38:1203:1137#0 1 1 76 53535 53610 [TGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGAT] HWI-EAS406:7:60:1055:895#0 1 1 76 53542 53617 [GTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAA] HWI-EAS406:5:37:314:959#0 1 1 76 53564 53639 [GTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTT] HWI-EAS406:6:58:1584:1523#0 1 1 76 53577 53652 [AAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCT] HWI-EAS406:7:56:1128:796#0 1 1 76 53584 53659 [TTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCC] HWI-EAS406:5:78:1362:1957#0 1 1 76 53589 53664 [AGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAA] HWI-EAS406:7:26:1321:1340#0 1 1 76 53596 53671 [AGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACC] HWI-EAS406:6:59:1045:1465#0 1 1 76 53598 53673 [GAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAA] HWI-EAS406:6:59:1115:1324#0 1 1 76 53602 53677 [TGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGT] HWI-EAS406:5:44:1561:461#0 1 1 76 53617 53692 [GTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCA] HWI-EAS406:7:7:1186:571#0 1 1 76 53624 53699 [TTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAA] HWI-EAS406:7:61:615:1410#0 1 1 76 53625 53700 [CTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCA] HWI-EAS406:7:32:1742:1156#0 1 1 76 53631 53706 [TCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAG] HWI-EAS406:7:57:904:1288#0 1 1 76 53632 53707 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:57:977:906#0 1 1 76 53633 53708 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:88:469:1148#0 1 1 76 53633 53708 [AGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTG] HWI-EAS406:5:51:343:874#0 1 1 76 53635 53710 [CAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCT] HWI-EAS406:6:44:408:1803#0 1 1 76 53637 53712 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:62:1018:1623#0 1 1 76 53638 53713 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:96:568:2003#0 1 1 76 53638 53713 [TGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAG] HWI-EAS406:7:49:1058:1502#0 1 1 76 53641 53716 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:6:10:647:218#0 1 1 76 53644 53719 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:7:93:191:976#0 1 1 76 53644 53719 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:5:24:806:1332#0 1 1 76 53645 53720 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:7:15:333:1636#0 1 1 76 53645 53720 [GTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTA] HWI-EAS406:5:57:1370:747#0 1 1 76 53646 53721 [TCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACA] HWI-EAS406:5:47:743:680#0 1 1 76 53648 53723 [TTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGC] HWI-EAS406:5:67:696:746#0 1 1 76 53652 53727 [TGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCT] HWI-EAS406:7:18:266:1402#0 1 1 76 53653 53728 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:5:51:775:1299#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:6:32:153:1345#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:7:49:1150:1267#0 1 1 76 53654 53729 [TCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTG] HWI-EAS406:6:64:1753:1014#0 1 1 76 53656 53731 [CTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTG] HWI-EAS406:6:17:1691:707#0 1 1 76 53660 53735 [CCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGA] HWI-EAS406:6:79:633:863#0 1 1 76 53663 53738 [CTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAA] HWI-EAS406:5:34:1333:412#0 1 1 76 53664 53739 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:5:15:969:1042#0 1 1 76 53665 53740 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:7:97:1167:280#0 1 1 76 53665 53740 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:36:518:679#0 1 1 76 53666 53741 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:54:1741:1277#0 1 1 76 53666 53741 [TGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAA] HWI-EAS406:7:81:166:408#0 1 1 76 53668 53743 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:49:1567:1190#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:63:726:607#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:45:510:1638#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:98:1520:1892#0 1 1 76 53670 53745 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:6:32:504:1203#0 1 1 76 53671 53746 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:7:19:498:1997#0 1 1 76 53671 53746 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:61:1174:249#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:76:612:158#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:7:4:1433:1399#0 1 1 76 53672 53747 [CCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAG] HWI-EAS406:7:80:183:999#0 1 1 76 53673 53748 [CAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGT] HWI-EAS406:6:32:1074:1880#0 1 1 76 53674 53749 [AAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTG] HWI-EAS406:5:4:486:796#0 1 1 76 53675 53750 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:5:63:1031:1371#0 1 1 76 53676 53751 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:6:23:1233:1354#0 1 1 76 53676 53751 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:5:24:218:423#0 1 1 76 53677 53752 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:7:78:154:1954#0 1 1 76 53677 53752 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:5:53:918:295#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:6:66:225:1404#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:32:1665:1736#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:62:115:769#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:71:782:789#0 1 1 76 53678 53753 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:5:5:1378:1611#0 1 1 76 53680 53755 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:7:10:256:644#0 1 1 76 53680 53755 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:27:114:140#0 1 1 76 53681 53756 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:65:176:624#0 1 1 76 53681 53756 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:46:949:1239#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:60:668:521#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:64:755:266#0 1 1 76 53682 53757 [ATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAG] HWI-EAS406:6:26:366:1585#0 1 1 76 53683 53758 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:1:1496:199#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:65:902:1012#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:62:339:319#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:91:1443:1906#0 1 1 76 53685 53760 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:5:50:1573:914#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:16:1511:680#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:31:178:391#0 1 1 76 53686 53761 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:5:34:406:871#0 1 1 76 53687 53762 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:6:79:753:185#0 1 1 76 53687 53762 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:5:5:1322:609#0 1 1 76 53688 53763 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:7:64:1248:1852#0 1 1 76 53688 53763 [GGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAA] HWI-EAS406:5:54:375:1950#0 1 1 76 53690 53765 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:5:57:1380:1653#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:56:338:1451#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:91:732:153#0 1 1 76 53692 53767 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:30:214:1194#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:74:1142:986#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:38:1357:1075#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:44:1020:1099#0 1 1 76 53693 53768 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:52:251:1614#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:86:1056:870#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:7:66:619:1649#0 1 1 76 53694 53769 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:72:758:676#0 1 1 76 53695 53770 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:74:752:1474#0 1 1 76 53695 53770 [TTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCA] HWI-EAS406:6:22:502:1518#0 1 1 76 53696 53771 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:31:1307:1856#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1567:1793#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1568:1795#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:7:44:828:1712#0 1 1 76 53697 53772 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:6:43:697:1975#0 1 1 76 53698 53773 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:7:37:1626:1745#0 1 1 76 53698 53773 [AAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCA] HWI-EAS406:6:70:1399:930#0 1 1 76 53699 53774 [AGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCAT] HWI-EAS406:5:62:689:1420#0 1 1 76 53700 53775 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:22:290:747#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:62:1222:999#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:34:460:1182#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:60:1445:1659#0 1 1 76 53702 53777 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:5:23:816:1245#0 1 1 76 53703 53778 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:7:98:652:1996#0 1 1 76 53703 53778 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:6:36:567:1926#0 1 1 76 53704 53779 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:7:75:667:566#0 1 1 76 53704 53779 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:21:1467:217#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:46:494:1335#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:6:44:574:183#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:7:85:784:1509#0 1 1 76 53705 53780 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:45:1699:1798#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:61:259:848#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:7:82:1487:989#0 1 1 76 53707 53782 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:44:799:1472#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:96:1345:1148#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:2:556:1588#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:40:1121:575#0 1 1 76 53708 53783 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:5:80:187:1669#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:6:42:995:1699#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:7:1:1151:1039#0 1 1 76 53709 53784 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:6:20:1380:749#0 1 1 76 53710 53785 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:7:68:1531:2000#0 1 1 76 53710 53785 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:6:172:756#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:83:1402:1552#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:97:211:1856#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:7:34:732:1499#0 1 1 76 53711 53786 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:31:1051:1941#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:72:16:734#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:6:18:1773:1683#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:7:62:201:660#0 1 1 76 53712 53787 [AGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATG] HWI-EAS406:6:38:1593:715#0 1 1 76 53713 53788 [GAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGT] HWI-EAS406:7:82:498:1137#0 1 1 76 53714 53789 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:6:16:786:304#0 1 1 76 53715 53790 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:7:62:987:306#0 1 1 76 53715 53790 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:6:39:548:1099#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:1:1505:1228#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:96:854:764#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:98:1214:1724#0 1 1 76 53716 53791 [AAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGA] HWI-EAS406:7:51:262:874#0 1 1 76 53717 53792 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:4:1419:1401#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:76:1374:135#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:6:56:234:1355#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:7:99:1407:1195#0 1 1 76 53718 53793 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:5:63:1022:1714#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:22:1111:1486#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:23:1173:1393#0 1 1 76 53721 53796 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:8:1504:449#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:23:1015:1090#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:80:295:924#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:86:1016:1150#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:18:286:633#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:52:551:770#0 1 1 76 53722 53797 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:5:92:222:1504#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:41:1220:1625#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:64:1773:1523#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:41:178:512#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:57:1245:950#0 1 1 76 53723 53798 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:13:1239:1827#0 1 1 76 53724 53799 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:50:1129:1025#0 1 1 76 53724 53799 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:58:544:1826#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:76:1770:835#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:2:1239:530#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:49:1558:1668#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:76:1322:2034#0 1 1 76 53726 53801 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:13:1139:793#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:25:1401:279#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:43:611:94#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:59:320:1125#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:36:1288:532#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:57:120:1826#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:93:937:626#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:7:34:854:831#0 1 1 76 53727 53802 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:5:24:350:1606#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:6:29:1254:1093#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:34:439:850#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:66:98:814#0 1 1 76 53728 53803 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:5:23:48:2016#0 1 1 76 53729 53804 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:6:87:506:1983#0 1 1 76 53729 53804 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:41:1175:1092#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:79:488:597#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:6:47:1352:1849#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:32:287:1824#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:46:103:1917#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:75:1152:938#0 1 1 76 53730 53805 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:26:1440:278#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:28:373:1728#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:69:96:355#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:6:23:600:781#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:7:32:1118:1144#0 1 1 76 53731 53806 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:1:841:1431#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:37:1200:270#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:68:506:1220#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:25:945:552#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:61:1483:374#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:65:1250:212#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:94:1427:1380#0 1 1 76 53732 53807 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:5:25:264:1466#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:6:84:595:1097#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:7:57:1363:1464#0 1 1 76 53733 53808 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:17:785:1676#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:79:760:1454#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:85:1239:1869#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:65:31:1244#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:99:858:1834#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:7:87:1110:181#0 1 1 76 53734 53809 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:5:39:824:753#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:6:95:1374:274#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:7:98:1702:780#0 1 1 76 53735 53810 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:5:8:1037:1569#0 1 1 76 53736 53811 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:6:46:1413:1388#0 1 1 76 53736 53811 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:23:1734:1243#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:41:1134:841#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:97:878:1045#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:6:52:408:1247#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:7:24:891:1738#0 1 1 76 53737 53812 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:5:72:815:1360#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:6:2:1349:1131#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:7:100:1432:1673#0 1 1 76 53738 53813 [AGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCT] HWI-EAS406:7:99:663:941#0 1 1 76 53739 53814 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:33:969:1266#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:56:1399:1209#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:1:570:1171#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:20:538:1974#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:36:1481:568#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:70:460:922#0 1 1 76 53741 53816 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:5:53:674:1771#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:41:1313:937#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:63:250:1453#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:3:584:2021#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:56:1367:1533#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:72:1445:1348#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:76:1312:1734#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:95:1543:1168#0 1 1 76 53742 53817 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:60:1107:1118#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:64:81:1379#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:68:1426:356#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:7:42:569:1573#0 1 1 76 53743 53818 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:5:53:1583:925#0 1 1 76 53744 53819 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:6:53:1027:1510#0 1 1 76 53744 53819 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:5:72:1317:148#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:6:261:208#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:43:1038:1753#0 1 1 76 53745 53820 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:27:600:1166#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:75:1673:1588#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:6:32:1188:1603#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:7:28:1234:1172#0 1 1 76 53746 53821 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:28:294:470#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:32:1732:1461#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:67:1690:1587#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:98:1438:220#0 1 1 76 53747 53822 [GTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGT] HWI-EAS406:6:81:1704:1251#0 1 1 76 53748 53823 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:5:66:939:722#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:5:940:714#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:74:245:845#0 1 1 76 53749 53824 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:16:1751:1337#0 1 1 76 53750 53825 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:92:1250:1878#0 1 1 76 53750 53825 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:5:7:150:937#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:6:45:698:675#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:56:106:152#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:92:53:1655#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:93:900:1917#0 1 1 76 53751 53826 [AGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTA] HWI-EAS406:7:82:1176:398#0 1 1 76 53752 53827 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:7:230:370#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:63:1577:1760#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:61:1184:1226#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:85:690:1531#0 1 1 76 53753 53828 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:27:956:983#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:45:963:1325#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:6:35:380:1287#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:7:54:1221:1597#0 1 1 76 53754 53829 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:5:58:1337:1843#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:45:1177:1809#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:100:568:843#0 1 1 76 53755 53830 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:31:349:1472#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:87:1211:787#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:13:777:1410#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:50:1751:1006#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:64:1425:835#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:73:1117:1512#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:79:473:1944#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:92:617:442#0 1 1 76 53756 53831 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:5:55:535:693#0 1 1 76 53757 53832 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:6:12:1010:1013#0 1 1 76 53757 53832 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:5:41:1064:662#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:36:964:919#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:75:617:687#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:7:80:1003:1446#0 1 1 76 53758 53833 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:5:82:56:1669#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:6:68:1701:1310#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:11:1314:1766#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:41:1106:2023#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:86:97:1248#0 1 1 76 53759 53834 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:8:590:1396#0 1 1 76 53760 53835 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:57:494:1164#0 1 1 76 53760 53835 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:5:57:1162:1145#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:37:1396:1876#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:65:362:1148#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:73:759:1170#0 1 1 76 53762 53837 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:63:1627:1085#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:67:81:493#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:7:76:1055:1562#0 1 1 76 53763 53838 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:5:75:1787:1708#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:30:698:510#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:32:1554:1024#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:74:1226:1465#0 1 1 76 53764 53839 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:7:784:1208#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:9:1546:1495#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:50:1176:969#0 1 1 76 53765 53840 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:1:1384:988#0 1 1 76 53766 53841 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:20:1449:626#0 1 1 76 53766 53841 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:65:1660:1360#0 1 1 76 53767 53842 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:90:1094:640#0 1 1 76 53767 53842 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:5:64:410:1688#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:6:26:1655:589#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:7:15:249:260#0 1 1 76 53768 53843 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:5:62:793:1138#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:52:1345:1732#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:66:886:2012#0 1 1 76 53769 53844 [CATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAG] HWI-EAS406:5:29:1101:1077#0 1 1 76 53770 53845 [ATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGA] HWI-EAS406:7:33:1565:1058#0 1 1 76 53771 53846 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:2:1040:467#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:36:215:9#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:7:28:569:749#0 1 1 76 53772 53847 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:5:18:973:721#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:11:509:961#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:14:970:1656#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:7:82:1505:741#0 1 1 76 53774 53849 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:6:57:73:1057#0 1 1 76 53775 53850 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:7:36:1184:1732#0 1 1 76 53775 53850 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:25:1080:188#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:64:1369:1981#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:69:479:1105#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:6:54:572:549#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1231:1579#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1232:1581#0 1 1 76 53776 53851 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:57:1570:888#0 1 1 76 53777 53852 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:74:854:1005#0 1 1 76 53777 53852 [ATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGG] HWI-EAS406:7:34:1270:343#0 1 1 76 53778 53853 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:6:56:668:1304#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:7:856:1930#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:45:888:1476#0 1 1 76 53780 53855 [CTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCAT] HWI-EAS406:6:42:851:734#0 1 1 76 53781 53856 [TTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATG] HWI-EAS406:5:3:257:2029#0 1 1 76 53782 53857 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:5:61:413:819#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:54:1631:1840#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:71:1463:1169#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:60:288:561#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:94:426:1935#0 1 1 76 53784 53859 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:5:19:1741:929#0 1 1 76 53785 53860 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:6:38:416:1575#0 1 1 76 53785 53860 [ATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGA] HWI-EAS406:6:53:405:1635#0 1 1 76 53786 53861 [TGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGAT] HWI-EAS406:5:22:210:1199#0 1 1 76 53787 53862 [GTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATT] HWI-EAS406:6:32:1464:1827#0 1 1 76 53788 53863 [TGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCT] HWI-EAS406:6:42:812:1517#0 1 1 76 53790 53865 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:56:536:422#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:63:1786:1961#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:6:23:416:682#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:7:3:459:561#0 1 1 76 53797 53872 [CAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATG] HWI-EAS406:6:96:1108:351#0 1 1 76 53798 53873 [AATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGA] HWI-EAS406:5:12:1631:691#0 1 1 76 53799 53874 [TACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGT] HWI-EAS406:5:6:1567:1249#0 1 1 76 53801 53876 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:27:1287:974#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:37:1042:502#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:59:719:958#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:66:739:603#0 1 1 76 53803 53878 [AACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCA] HWI-EAS406:7:60:332:120#0 1 1 76 53804 53879 [ACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAA] HWI-EAS406:6:80:1253:591#0 1 1 76 53805 53880 [CAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAAT] HWI-EAS406:5:21:737:693#0 1 1 76 53806 53881 [AATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATG] HWI-EAS406:7:22:637:138#0 1 1 76 53807 53882 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:6:63:1509:846#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:2:1085:1217#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:57:1366:484#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:72:146:631#0 1 1 76 53808 53883 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:5:84:1120:1798#0 1 1 76 53809 53884 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:7:100:1230:665#0 1 1 76 53809 53884 [TTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCA] HWI-EAS406:5:44:828:1385#0 1 1 76 53810 53885 [TCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCAT] HWI-EAS406:6:30:371:1827#0 1 1 76 53811 53886 [CCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATC] HWI-EAS406:6:22:246:261#0 1 1 76 53812 53887 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:62:214:1434#0 1 1 76 53814 53889 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:99:593:171#0 1 1 76 53814 53889 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:5:43:1427:1753#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:6:15:1088:326#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:16:616:1762#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:22:193:2002#0 1 1 76 53815 53890 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:5:19:257:841#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:6:22:840:86#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:7:46:1792:706#0 1 1 76 53816 53891 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:6:29:1368:1637#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:54:1378:1220#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:72:1195:1707#0 1 1 76 53817 53892 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:6:29:705:301#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:51:1007:1854#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:71:1350:990#0 1 1 76 53818 53893 [GATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGA] HWI-EAS406:5:24:253:1153#0 1 1 76 53819 53894 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:23:1411:1888#0 1 1 76 53820 53895 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:64:723:1674#0 1 1 76 53820 53895 [TGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGG] HWI-EAS406:7:2:673:1691#0 1 1 76 53821 53896 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:5:76:1155:837#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:6:94:469:788#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:37:643:1364#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:53:289:1408#0 1 1 76 53822 53897 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:6:45:1044:1420#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:40:710:746#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:100:490:1435#0 1 1 76 53824 53899 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:5:13:1725:407#0 1 1 76 53825 53900 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:7:52:149:487#0 1 1 76 53825 53900 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:5:60:1672:59#0 1 1 76 53826 53901 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:6:63:145:1161#0 1 1 76 53826 53901 [AGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGAT] HWI-EAS406:6:18:478:238#0 1 1 76 53827 53902 [GCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATG] HWI-EAS406:5:21:470:772#0 1 1 76 53828 53903 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:45:1121:616#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:62:1614:199#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:92:645:1588#0 1 1 76 53829 53904 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:31:952:221#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:63:1577:1631#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:68:1329:1923#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:100:546:1586#0 1 1 76 53831 53906 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:43:1089:1589#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:99:778:1477#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:6:22:247:1686#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:7:71:167:549#0 1 1 76 53832 53907 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:5:14:1082:1432#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:6:8:1319:401#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:7:61:615:223#0 1 1 76 53833 53908 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:5:15:1128:400#0 1 1 76 53834 53909 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:6:64:715:621#0 1 1 76 53834 53909 [AGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGA] HWI-EAS406:7:3:437:1420#0 1 1 76 53835 53910 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:5:95:712:892#0 1 1 76 53836 53911 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:7:99:1012:428#0 1 1 76 53836 53911 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:6:79:160:1028#0 1 1 76 53837 53912 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:7:65:502:1307#0 1 1 76 53837 53912 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:5:23:87:1049#0 1 1 76 53838 53913 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:7:27:559:906#0 1 1 76 53838 53913 [GAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAA] HWI-EAS406:5:44:1725:701#0 1 1 76 53839 53914 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:6:26:652:624#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:23:313:1514#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:28:269:575#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:42:1472:1659#0 1 1 76 53840 53915 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:5:61:1585:978#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:27:843:932#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:38:823:1504#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:7:67:242:1611#0 1 1 76 53841 53916 [GGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTA] HWI-EAS406:6:100:484:1453#0 1 1 76 53842 53917 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:21:1256:322#0 1 1 76 53843 53918 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:42:1590:1503#0 1 1 76 53843 53918 [AGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGA] HWI-EAS406:6:15:1098:1313#0 1 1 76 53844 53919 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:19:167:915#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:28:962:855#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:10:402:1387#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:22:507:446#0 1 1 76 53846 53921 [TGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGA] HWI-EAS406:7:79:69:1069#0 1 1 76 53847 53922 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:17:476:1819#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:59:1763:1643#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:99:1068:1770#0 1 1 76 53848 53923 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:6:42:1573:1130#0 1 1 76 53849 53924 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:7:60:983:768#0 1 1 76 53849 53924 [AGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCA] HWI-EAS406:6:90:733:843#0 1 1 76 53851 53926 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:5:13:1589:766#0 1 1 76 53852 53927 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:6:88:744:2026#0 1 1 76 53852 53927 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:6:72:914:1448#0 1 1 76 53853 53928 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:7:32:122:1425#0 1 1 76 53853 53928 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:6:30:639:1010#0 1 1 76 53854 53929 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:7:85:958:1700#0 1 1 76 53854 53929 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:5:98:1773:1289#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:27:634:898#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:96:546:1947#0 1 1 76 53856 53931 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:5:88:652:1575#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:6:37:1580:1320#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:7:51:1088:1628#0 1 1 76 53861 53936 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:44:265:1232#0 1 1 76 53862 53937 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:62:909:1646#0 1 1 76 53862 53937 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:6:69:851:1815#0 1 1 76 53863 53938 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:7:20:1140:1641#0 1 1 76 53863 53938 [CTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACAC] HWI-EAS406:5:59:925:1704#0 1 1 76 53864 53939 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:5:18:1269:245#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:6:64:121:1069#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:7:91:277:970#0 1 1 76 53865 53940 [TACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTA] HWI-EAS406:5:47:714:1498#0 1 1 76 53866 53941 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:5:13:1230:1478#0 1 1 76 53868 53943 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:6:19:771:764#0 1 1 76 53868 53943 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:52:138:1695#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:66:1153:1644#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:34:85:723#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:39:45:1058#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:43:1182:1989#0 1 1 76 53869 53944 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:6:57:137:1673#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:28:1513:1071#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:45:837:1484#0 1 1 76 53870 53945 [TGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGT] HWI-EAS406:7:94:1160:1729#0 1 1 76 53872 53947 [GAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTG] HWI-EAS406:6:99:704:55#0 1 1 76 53873 53948 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:6:1448:1278#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:10:451:1596#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:6:5:671:1670#0 1 1 76 53875 53950 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:6:6:1434:396#0 1 1 76 53876 53951 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:7:29:875:1895#0 1 1 76 53876 53951 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:11:1540:1268#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:57:413:1041#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:6:74:1277:1557#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:7:53:362:1259#0 1 1 76 53877 53952 [CAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTT] HWI-EAS406:5:72:857:1226#0 1 1 76 53878 53953 [AATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTG] HWI-EAS406:5:60:340:831#0 1 1 76 53879 53954 [ATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGG] HWI-EAS406:7:90:1254:1384#0 1 1 76 53880 53955 [TGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGA] HWI-EAS406:6:77:527:1198#0 1 1 76 53881 53956 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:6:80:854:939#0 1 1 76 53882 53957 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:7:60:1164:1144#0 1 1 76 53882 53957 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:25:1359:1399#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:76:172:769#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:96:618:1648#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:7:59:1626:278#0 1 1 76 53883 53958 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:44:1270:2024#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:77:476:271#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:7:96:1622:1184#0 1 1 76 53884 53959 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:5:82:1188:1438#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:6:34:347:355#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:70:1117:1195#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:75:1591:977#0 1 1 76 53885 53960 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:45:1223:507#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:67:287:642#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:6:53:1626:1349#0 1 1 76 53886 53961 [ATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGG] HWI-EAS406:7:40:286:1590#0 1 1 76 53888 53963 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:5:6:780:1095#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:6:60:1547:993#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:7:31:1086:1440#0 1 1 76 53889 53964 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:5:1:642:862#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:76:80:1186#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:99:491:978#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:7:60:791:701#0 1 1 76 53890 53965 [CAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTAT] HWI-EAS406:7:74:1435:300#0 1 1 76 53891 53966 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:38:821:581#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:79:1780:301#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:7:44:716:1690#0 1 1 76 53892 53967 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:5:91:190:349#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:6:25:917:360#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:7:39:1580:1695#0 1 1 76 53894 53969 [GGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA] HWI-EAS406:6:35:956:908#0 1 1 76 53895 53970 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:5:32:575:1795#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:6:32:600:1560#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:7:34:778:1836#0 1 1 76 53896 53971 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:29:896:170#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:37:639:1793#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:54:1271:294#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:57:1360:735#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:6:72:220:632#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:7:22:1124:121#0 1 1 76 53898 53973 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:5:33:1187:1504#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:62:514:1656#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:86:788:1355#0 1 1 76 53899 53974 [ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAG] HWI-EAS406:5:54:783:1748#0 1 1 76 53901 53976 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:21:317:1316#0 1 1 76 53902 53977 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:80:825:174#0 1 1 76 53902 53977 [GTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTC] HWI-EAS406:7:63:1279:329#0 1 1 76 53903 53978 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:5:80:1428:269#0 1 1 76 53904 53979 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:6:65:1244:1471#0 1 1 76 53904 53979 [TCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTC] HWI-EAS406:6:53:192:736#0 1 1 76 53905 53980 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:5:92:49:1461#0 1 1 76 53906 53981 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:7:54:281:668#0 1 1 76 53906 53981 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:17:1119:477#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:19:1478:1281#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:6:60:634:1666#0 1 1 76 53907 53982 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:14:1203:1035#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1420:1500#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1422:1501#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:6:25:1163:723#0 1 1 76 53908 53983 [GAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCG] HWI-EAS406:6:98:883:1692#0 1 1 76 53909 53984 [AGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGA] HWI-EAS406:7:49:630:1898#0 1 1 76 53910 53985 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:40:1573:1541#0 1 1 76 53911 53986 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:72:730:185#0 1 1 76 53911 53986 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:41:749:946#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:81:1134:1986#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:91:1360:1610#0 1 1 76 53912 53987 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:5:44:1317:939#0 1 1 76 53913 53988 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:6:12:98:266#0 1 1 76 53913 53988 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:5:19:421:380#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:70:1220:1053#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:98:834:906#0 1 1 76 53915 53990 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:5:93:115:709#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:26:728:691#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:61:455:1037#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:79:179:1965#0 1 1 76 53916 53991 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:8:727:453#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:64:879:634#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:80:1491:1809#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:7:52:178:742#0 1 1 76 53917 53992 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:5:41:1062:1929#0 1 1 76 53918 53993 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:6:31:1747:623#0 1 1 76 53918 53993 [AGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGC] HWI-EAS406:6:78:186:1663#0 1 1 76 53919 53994 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:20:440:744#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:57:1309:1980#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:58:664:1615#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:6:78:993:297#0 1 1 76 53920 53995 [GATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTA] HWI-EAS406:6:60:1220:1711#0 1 1 76 53921 53996 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:47:519:669#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:71:834:558#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:6:42:1752:501#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:7:92:1198:1990#0 1 1 76 53922 53997 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:5:71:1586:762#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:6:98:77:1185#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:56:381:873#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:84:723:1477#0 1 1 76 53923 53998 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:37:263:1790#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:42:132:1471#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:6:73:141:1610#0 1 1 76 53924 53999 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:88:569:1377#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:97:586:928#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:14:564:751#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:98:1335:438#0 1 1 76 53925 54000 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:5:72:1090:782#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:6:42:1711:392#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:3:1582:445#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:34:922:852#0 1 1 76 53926 54001 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:6:11:1488:353#0 1 1 76 53927 54002 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:7:68:172:914#0 1 1 76 53927 54002 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:5:38:475:1202#0 1 1 76 53928 54003 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:7:97:572:717#0 1 1 76 53928 54003 [AAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGC] HWI-EAS406:5:72:1652:1326#0 1 1 76 53929 54004 [GCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTT] HWI-EAS406:6:86:744:1804#0 1 1 76 53931 54006 [CTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTG] HWI-EAS406:7:92:1168:291#0 1 1 76 53932 54007 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:6:89:754:1507#0 1 1 76 53933 54008 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:7:48:639:610#0 1 1 76 53933 54008 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:25:1067:1627#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:82:372:919#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:6:27:428:893#0 1 1 76 53934 54009 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:6:1055:1189#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:94:235:1499#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:13:128:1692#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:99:198:1261#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:7:35:1019:1849#0 1 1 76 53935 54010 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:5:96:75:1459#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:12:613:2015#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:50:1410:1118#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:56:167:925#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:91:1633:1695#0 1 1 76 53936 54011 [CACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCC] HWI-EAS406:6:20:1297:1560#0 1 1 76 53937 54012 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:47:1430:499#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:67:90:1899#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:52:1183:1187#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:57:146:1555#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:83:588:330#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:7:17:987:818#0 1 1 76 53938 54013 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:6:70:588:639#0 1 1 76 53939 54014 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:7:33:1112:1882#0 1 1 76 53939 54014 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:11:833:1953#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:61:976:940#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:89:403:309#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:44:1423:985#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:62:1723:212#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:65:390:1548#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:83:1477:427#0 1 1 76 53940 54015 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:6:6:58:608#0 1 1 76 53941 54016 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:7:50:641:1459#0 1 1 76 53941 54016 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:6:82:542:1980#0 1 1 76 53942 54017 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:7:34:1283:493#0 1 1 76 53942 54017 [CTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTC] HWI-EAS406:5:81:225:724#0 1 1 76 53943 54018 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:3:717:1798#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:31:921:1750#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:42:150:711#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:4:434:33#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:56:416:1068#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:99:54:1548#0 1 1 76 53944 54019 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:19:1381:347#0 1 1 76 53945 54020 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:51:1338:736#0 1 1 76 53945 54020 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:5:75:621:276#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:10:1296:1244#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:71:1579:888#0 1 1 76 53946 54021 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:23:812:1012#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:78:102:1558#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:87:525:1809#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:31:471:759#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:79:1344:2004#0 1 1 76 53948 54023 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:5:49:98:2023#0 1 1 76 53949 54024 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:6:59:1152:522#0 1 1 76 53949 54024 [TCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCA] HWI-EAS406:7:49:1313:762#0 1 1 76 53950 54025 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:6:54:1459:1963#0 1 1 76 53952 54027 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:7:11:1488:1455#0 1 1 76 53952 54027 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:6:36:677:155#0 1 1 76 53953 54028 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:7:38:394:837#0 1 1 76 53953 54028 [GGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGA] HWI-EAS406:5:59:1281:1521#0 1 1 76 53954 54029 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:5:53:897:165#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:30:553:918#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:54:1063:1707#0 1 1 76 53955 54030 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:5:83:390:1898#0 1 1 76 53956 54031 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:6:35:1663:440#0 1 1 76 53956 54031 [CTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCT] HWI-EAS406:5:77:61:1345#0 1 1 76 53958 54033 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:52:441:826#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:55:1378:1320#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:91:648:2026#0 1 1 76 53959 54034 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:44:1324:176#0 1 1 76 53960 54035 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:81:477:1340#0 1 1 76 53960 54035 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:43:553:1574#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:45:822:373#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:6:29:1105:782#0 1 1 76 53961 54036 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:40:723:1752#0 1 1 76 53963 54038 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:45:744:896#0 1 1 76 53963 54038 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:5:37:380:576#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:38:682:1903#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:83:1387:772#0 1 1 76 53965 54040 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:5:43:562:1255#0 1 1 76 53966 54041 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:7:93:809:856#0 1 1 76 53966 54041 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:5:29:1156:1834#0 1 1 76 53967 54042 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:7:41:697:849#0 1 1 76 53967 54042 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:5:83:778:1358#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:20:906:418#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:50:1396:1687#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:7:75:936:1547#0 1 1 76 53968 54043 [GAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTC] HWI-EAS406:6:89:161:1255#0 1 1 76 53969 54044 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:5:57:482:1642#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:41:1677:1966#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:74:117:759#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:75:432:1382#0 1 1 76 53970 54045 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:5:26:291:1912#0 1 1 76 53971 54046 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:7:32:1615:1525#0 1 1 76 53971 54046 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:40:1352:1869#0 1 1 76 53972 54047 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:70:809:1723#0 1 1 76 53972 54047 [AAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTA] HWI-EAS406:5:3:949:714#0 1 1 76 53973 54048 [AGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACA] HWI-EAS406:7:9:312:19#0 1 1 76 53975 54050 [GTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAA] HWI-EAS406:6:9:1731:1120#0 1 1 76 53976 54051 [TCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAG] HWI-EAS406:6:1:547:479#0 1 1 76 53977 54052 [TCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAA] HWI-EAS406:7:99:61:1603#0 1 1 76 53979 54054 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:6:60:1243:1365#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:4:121:689#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:93:1081:97#0 1 1 76 53980 54055 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:5:26:1615:1713#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:41:1043:1255#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:72:103:1770#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:7:99:1349:604#0 1 1 76 53981 54056 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:6:97:767:1015#0 1 1 76 53982 54057 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:7:53:77:1051#0 1 1 76 53982 54057 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:5:62:1300:1371#0 1 1 76 53983 54058 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:6:55:1719:1387#0 1 1 76 53983 54058 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:5:5:288:1125#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:6:39:962:1973#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:7:54:273:2027#0 1 1 76 53984 54059 [TTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGA] HWI-EAS406:7:100:1344:902#0 1 1 76 53986 54061 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:14:663:1252#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:50:1119:948#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:6:51:1647:1653#0 1 1 76 53987 54062 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:6:38:1233:1247#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:51:1241:662#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:76:446:1078#0 1 1 76 53989 54064 [GGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCT] HWI-EAS406:7:79:1686:963#0 1 1 76 53990 54065 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:49:1457:1100#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:68:171:1825#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:67:1555:2010#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:78:1460:1502#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:7:7:751:1141#0 1 1 76 53991 54066 [AGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCT] HWI-EAS406:5:75:1183:269#0 1 1 76 53992 54067 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:17:1630:1064#0 1 1 76 53993 54068 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:93:671:1034#0 1 1 76 53993 54068 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:6:43:1683:1051#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:62:1392:285#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:65:472:1193#0 1 1 76 53994 54069 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:30:1353:1081#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:68:299:782#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:6:58:300:1064#0 1 1 76 53995 54070 [AGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGG] HWI-EAS406:5:4:156:941#0 1 1 76 53996 54071 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:32:267:147#0 1 1 76 53997 54072 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:38:1541:1446#0 1 1 76 53997 54072 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:5:20:720:1400#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:6:35:677:1778#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:7:90:983:632#0 1 1 76 53998 54073 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:5:63:928:1410#0 1 1 76 54000 54075 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:6:10:305:1638#0 1 1 76 54000 54075 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:55:859:984#0 1 1 76 54002 54077 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:94:749:1858#0 1 1 76 54002 54077 [GCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGC] HWI-EAS406:5:37:1539:1116#0 1 1 76 54003 54078 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:16:1287:1466#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:48:1089:706#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:54:177:1301#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:6:38:1374:1426#0 1 1 76 54005 54080 [TGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGA] HWI-EAS406:7:6:1282:521#0 1 1 76 54006 54081 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:6:2:433:1863#0 1 1 76 54007 54082 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:7:7:1105:730#0 1 1 76 54007 54082 [ATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATC] HWI-EAS406:6:70:480:304#0 1 1 76 54008 54083 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:38:94:1030#0 1 1 76 54009 54084 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:65:1234:1621#0 1 1 76 54009 54084 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:5:28:1247:1588#0 1 1 76 54010 54085 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:6:53:1468:1857#0 1 1 76 54010 54085 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:31:1752:791#0 1 1 76 54011 54086 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:41:1143:1859#0 1 1 76 54011 54086 [CTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTC] HWI-EAS406:6:35:1486:1808#0 1 1 76 54012 54087 [TTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCA] HWI-EAS406:5:37:281:275#0 1 1 76 54013 54088 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:35:1411:1805#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:75:1704:1134#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:6:79:577:1487#0 1 1 76 54014 54089 [TGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGT] HWI-EAS406:5:46:1694:1456#0 1 1 76 54015 54090 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:6:41:1700:2005#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:47:370:1388#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:68:53:843#0 1 1 76 54016 54091 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:5:25:1521:1357#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:6:69:1289:763#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:7:73:484:1824#0 1 1 76 54018 54093 [TGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAG] HWI-EAS406:5:35:539:902#0 1 1 76 54019 54094 [TTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTA] HWI-EAS406:7:49:1156:238#0 1 1 76 54021 54096 [TGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTAC] HWI-EAS406:5:70:1312:1703#0 1 1 76 54022 54097 [CAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCC] HWI-EAS406:5:30:1054:1157#0 1 1 76 54024 54099 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:5:29:1569:363#0 1 1 76 54025 54100 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:7:54:1658:1211#0 1 1 76 54025 54100 [AAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTG] HWI-EAS406:7:57:459:506#0 1 1 76 54026 54101 [GAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTG] HWI-EAS406:6:65:1675:1051#0 1 1 76 54028 54103 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:5:8:1221:662#0 1 1 76 54029 54104 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:7:59:1524:1978#0 1 1 76 54029 54104 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:60:1591:1383#0 1 1 76 54031 54106 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:61:662:313#0 1 1 76 54031 54106 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:28:1721:526#0 1 1 76 54036 54111 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:79:947:2033#0 1 1 76 54036 54111 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:6:46:1601:1005#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:51:154:262#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:79:1464:344#0 1 1 76 54037 54112 [TCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGA] HWI-EAS406:7:82:855:1925#0 1 1 76 54039 54114 [CACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAG] HWI-EAS406:7:3:1094:1673#0 1 1 76 54040 54115 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:5:12:1619:1515#0 1 1 76 54041 54116 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:6:65:331:1333#0 1 1 76 54041 54116 [CTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGA] HWI-EAS406:5:62:192:1866#0 1 1 76 54042 54117 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:3:1065:1215#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:15:1564:1353#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:7:42:666:1287#0 1 1 76 54044 54119 [AGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCT] HWI-EAS406:6:50:757:1696#0 1 1 76 54045 54120 [GTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTC] HWI-EAS406:6:58:1422:1798#0 1 1 76 54046 54121 [ACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCC] HWI-EAS406:5:65:798:193#0 1 1 76 54048 54123 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:53:603:1620#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:64:1755:1587#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:7:57:866:497#0 1 1 76 54050 54125 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:5:68:897:1716#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:27:1416:776#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:45:1583:1140#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:50:873:1753#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:7:41:62:1152#0 1 1 76 54051 54126 [GAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTG] HWI-EAS406:6:39:1044:1768#0 1 1 76 54052 54127 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:5:8:722:814#0 1 1 76 54053 54128 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:7:42:1413:1613#0 1 1 76 54053 54128 [AGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAA] HWI-EAS406:5:83:1427:841#0 1 1 76 54054 54129 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:6:3:323:1911#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:50:1535:1600#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:77:63:1840#0 1 1 76 54055 54130 [GTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGAT] HWI-EAS406:6:73:792:159#0 1 1 76 54057 54132 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:6:52:215:151#0 1 1 76 54058 54133 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:7:57:1335:1367#0 1 1 76 54058 54133 [AGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTG] HWI-EAS406:7:99:1532:1321#0 1 1 76 54059 54134 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:5:35:447:1409#0 1 1 76 54060 54135 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:6:37:1685:923#0 1 1 76 54060 54135 [ACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGA] HWI-EAS406:5:8:236:766#0 1 1 76 54061 54136 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:5:82:977:1482#0 1 1 76 54062 54137 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:6:95:275:559#0 1 1 76 54062 54137 [TCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAG] HWI-EAS406:7:15:625:809#0 1 1 76 54063 54138 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:8:3:842#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:67:1600:789#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:88:187:646#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:7:81:267:1832#0 1 1 76 54064 54139 [TCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGT] HWI-EAS406:5:38:235:1742#0 1 1 76 54065 54140 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:5:18:662:1105#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:6:3:1177:1854#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:7:9:992:765#0 1 1 76 54066 54141 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:43:854:1097#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:93:203:1181#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:7:30:1236:146#0 1 1 76 54067 54142 [CTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATG] HWI-EAS406:5:41:1430:856#0 1 1 76 54068 54143 [TGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGA] HWI-EAS406:6:8:901:1916#0 1 1 76 54069 54144 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:5:47:597:469#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:6:41:457:1990#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:54:1001:853#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:75:488:1983#0 1 1 76 54070 54145 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:1:872:1748#0 1 1 76 54071 54146 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:99:765:526#0 1 1 76 54071 54146 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:5:80:1244:1040#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:10:1560:773#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:37:846:1253#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:43:1695:1212#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:59:1265:423#0 1 1 76 54072 54147 [GTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATA] HWI-EAS406:5:74:851:1515#0 1 1 76 54073 54148 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:5:23:1249:1277#0 1 1 76 54074 54149 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:7:34:354:425#0 1 1 76 54074 54149 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:5:35:998:808#0 1 1 76 54075 54150 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:7:61:191:1269#0 1 1 76 54075 54150 [CTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTAC] HWI-EAS406:7:35:1265:691#0 1 1 76 54078 54153 [TGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACA] HWI-EAS406:6:67:942:1117#0 1 1 76 54079 54154 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:6:18:201:519#0 1 1 76 54082 54157 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:7:38:1036:1712#0 1 1 76 54082 54157 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:1:971:947#0 1 1 76 54083 54158 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:95:362:782#0 1 1 76 54083 54158 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:5:22:289:559#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:60:698:460#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:71:177:953#0 1 1 76 54084 54159 [TCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTG] HWI-EAS406:6:93:735:163#0 1 1 76 54086 54161 [CAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGT] HWI-EAS406:7:44:31:512#0 1 1 76 54087 54162 [AGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTG] HWI-EAS406:5:14:1556:1112#0 1 1 76 54088 54163 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:7:1377:1427#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:46:104:355#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:6:838:799#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:56:617:1957#0 1 1 76 54089 54164 [GAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTG] HWI-EAS406:5:61:214:1783#0 1 1 76 54091 54166 [AAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGC] HWI-EAS406:5:25:1168:1342#0 1 1 76 54092 54167 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:6:39:953:1361#0 1 1 76 54093 54168 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:7:31:1758:925#0 1 1 76 54093 54168 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:50:1234:1908#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:51:539:1145#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:7:42:988:259#0 1 1 76 54094 54169 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:5:94:1523:1523#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:6:962:858#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:28:1313:471#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:32:713:455#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:60:1645:1371#0 1 1 76 54095 54170 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:5:69:1336:939#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:6:18:1512:1768#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:7:76:96:774#0 1 1 76 54097 54172 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:6:57:1393:1335#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:36:530:50#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:48:1493:1687#0 1 1 76 54098 54173 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:5:6:1630:1633#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:6:65:1117:1477#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:7:48:398:614#0 1 1 76 54099 54174 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:5:959:788#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:49:1299:1294#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:65:760:767#0 1 1 76 54100 54175 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:5:42:1274:983#0 1 1 76 54101 54176 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:7:16:1408:327#0 1 1 76 54101 54176 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:49:1260:1907#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:71:762:262#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:67:1718:913#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:100:1551:1706#0 1 1 76 54102 54177 [GGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGT] HWI-EAS406:7:39:537:2011#0 1 1 76 54103 54178 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:5:70:1264:579#0 1 1 76 54104 54179 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:6:18:742:1162#0 1 1 76 54104 54179 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:5:38:610:654#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:6:5:1427:983#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:6:247:694#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:39:309:1243#0 1 1 76 54105 54180 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:5:36:1023:788#0 1 1 76 54106 54181 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:6:36:722:1541#0 1 1 76 54106 54181 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:54:1390:1329#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:84:296:1881#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:6:49:1063:1067#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:38:235:939#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:815#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:813#0 1 1 76 54107 54182 [TCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGA] HWI-EAS406:7:66:668:514#0 1 1 76 54108 54183 [CTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAG] HWI-EAS406:6:1:1168:1872#0 1 1 76 54109 54184 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:53:1102:724#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:96:530:2016#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:66:42:446#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:73:1393:935#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:90:175:1657#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:7:49:1176:1859#0 1 1 76 54110 54185 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:7:1605:1811#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:25:678:836#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:26:1605:573#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:32:1175:618#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:40:482:270#0 1 1 76 54111 54186 [AGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCT] HWI-EAS406:6:59:668:1088#0 1 1 76 54112 54187 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:5:89:237:262#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:6:82:981:753#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:7:95:125:1460#0 1 1 76 54113 54188 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:35:1057:851#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:94:541:1656#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:6:33:1425:321#0 1 1 76 54116 54191 [ACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGA] HWI-EAS406:6:10:1351:765#0 1 1 76 54117 54192 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:5:5:1510:1678#0 1 1 76 54119 54194 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:7:85:551:1050#0 1 1 76 54119 54194 [CTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATT] HWI-EAS406:7:44:439:848#0 1 1 76 54123 54198 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:37:674:1509#0 1 1 76 54124 54199 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:100:798:1572#0 1 1 76 54124 54199 [GTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGA] HWI-EAS406:7:56:798:1877#0 1 1 76 54125 54200 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:32:285:1614#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:33:1199:395#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:6:9:1257:567#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:7:78:402:1695#0 1 1 76 54126 54201 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:5:73:501:691#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:42:1262:1782#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:62:1716:1116#0 1 1 76 54127 54202 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:47:319:1607#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:79:1415:718#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:7:17:1742:361#0 1 1 76 54128 54203 [AGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCT] HWI-EAS406:5:65:1683:1785#0 1 1 76 54129 54204 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:22:469:211#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:47:1051:822#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:89:645:1253#0 1 1 76 54131 54206 [TTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGG] HWI-EAS406:7:53:1035:1424#0 1 1 76 54132 54207 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:27:1133:755#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:94:227:1579#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:6:42:753:402#0 1 1 76 54134 54209 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:34:1248:1931#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:44:495:2018#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:72:1132:1576#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:7:64:220:1228#0 1 1 76 54135 54210 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:6:8:1387:1563#0 1 1 76 54136 54211 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:7:86:1191:1778#0 1 1 76 54136 54211 [AGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGC] HWI-EAS406:7:78:1540:1877#0 1 1 76 54137 54212 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:5:37:178:213#0 1 1 76 54139 54214 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:6:45:363:213#0 1 1 76 54139 54214 [TATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCAT] HWI-EAS406:5:3:156:1647#0 1 1 76 54140 54215 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:62:779:1177#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:72:936:54#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:79:541:1148#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:6:6:1460:1107#0 1 1 76 54141 54216 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:5:35:29:1868#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:89:1573:1987#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:92:1202:380#0 1 1 76 54142 54217 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:5:66:1651:1834#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:6:1:818:861#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:7:23:1150:620#0 1 1 76 54143 54218 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:9:600:1790#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:40:845:408#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:7:61:441:677#0 1 1 76 54144 54219 [GATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTA] HWI-EAS406:7:25:1391:905#0 1 1 76 54145 54220 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:29:1417:999#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:77:1148:453#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:28:317:1489#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:34:58:451#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:65:1663:1191#0 1 1 76 54146 54221 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:5:52:1161:616#0 1 1 76 54147 54222 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:7:28:336:1807#0 1 1 76 54147 54222 [ACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCT] HWI-EAS406:6:85:243:843#0 1 1 76 54148 54223 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:6:41:295:981#0 1 1 76 54149 54224 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:7:66:140:852#0 1 1 76 54149 54224 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:5:79:393:543#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:18:1350:1820#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:32:1319:1017#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:46:923:1720#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:99:1138:1186#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:17:1267:1397#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:86:387:2021#0 1 1 76 54150 54225 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:16:1065:1213#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:19:675:634#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:46:1591:2004#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:99:1426:1408#0 1 1 76 54151 54226 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:12:881:861#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:929:724#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:1746:503#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:6:71:872:401#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:7:53:948:1175#0 1 1 76 54152 54227 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:56:246:799#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:58:242:1499#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:71:855:1885#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:84:220:1674#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:7:48:1599:1908#0 1 1 76 54154 54229 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:5:21:1642:1137#0 1 1 76 54155 54230 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:6:6:1147:732#0 1 1 76 54155 54230 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:5:66:1128:1376#0 1 1 76 54156 54231 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:6:55:656:391#0 1 1 76 54156 54231 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:20:1104:1681#0 1 1 76 54157 54232 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:84:997:392#0 1 1 76 54157 54232 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:67:700:788#0 1 1 76 54158 54233 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:89:1120:429#0 1 1 76 54158 54233 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:36:1143:227#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:80:711:956#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:36:1396:1577#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:88:584:1502#0 1 1 76 54159 54234 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:11:1516:1033#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:87:1474:820#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:7:31:573:281#0 1 1 76 54161 54236 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:6:26:1456:433#0 1 1 76 54162 54237 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:7:58:1242:1021#0 1 1 76 54162 54237 [GGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATT] HWI-EAS406:6:26:1525:983#0 1 1 76 54163 54238 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:21:1447:171#0 1 1 76 54164 54239 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:53:579:1024#0 1 1 76 54164 54239 [TGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGT] HWI-EAS406:7:30:587:260#0 1 1 76 54165 54240 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:22:1574:1334#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:79:793:103#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:3:757:524#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:37:1589:439#0 1 1 76 54167 54242 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:5:74:1683:444#0 1 1 76 54168 54243 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:7:65:530:1740#0 1 1 76 54168 54243 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:60:700:816#0 1 1 76 54169 54244 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:94:880:1637#0 1 1 76 54169 54244 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:5:40:1586:1236#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1383:228#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1384:231#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:7:27:357:718#0 1 1 76 54171 54246 [ATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGA] HWI-EAS406:5:40:1646:202#0 1 1 76 54173 54248 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:5:56:1143:581#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:31:1016:1570#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:46:593:1405#0 1 1 76 54175 54250 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:24:814:315#0 1 1 76 54176 54251 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:82:967:1960#0 1 1 76 54176 54251 [GAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGG] HWI-EAS406:5:10:1130:1883#0 1 1 76 54179 54254 [GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGC] HWI-EAS406:7:68:216:273#0 1 1 76 54181 54256 [AGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCAC] HWI-EAS406:5:70:157:381#0 1 1 76 54183 54258 [GCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGA] HWI-EAS406:6:3:1482:934#0 1 1 76 54185 54260 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:6:38:723:1684#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:6:122:307#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:47:563:1669#0 1 1 76 54186 54261 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:5:37:398:1887#0 1 1 76 54188 54263 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:6:39:44:975#0 1 1 76 54188 54263 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:5:57:1763:1732#0 1 1 76 54191 54266 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:6:57:337:21#0 1 1 76 54191 54266 [CCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCC] HWI-EAS406:5:72:1722:76#0 1 1 76 54194 54269 [CATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCA] HWI-EAS406:7:75:1542:775#0 1 1 76 54195 54270 [ATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCAT] HWI-EAS406:6:36:950:1807#0 1 1 76 54196 54271 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:55:252:1552#0 1 1 76 54198 54273 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:90:687:1011#0 1 1 76 54198 54273 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:5:22:933:1376#0 1 1 76 54199 54274 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:7:55:464:1339#0 1 1 76 54199 54274 [TTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGG] HWI-EAS406:5:7:1026:1071#0 1 1 76 54201 54276 [TCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGT] HWI-EAS406:5:95:1707:1819#0 1 1 76 54202 54277 [CTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTA] HWI-EAS406:6:7:272:1017#0 1 1 76 54203 54278 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:45:1766:1276#0 1 1 76 54204 54279 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:85:635:917#0 1 1 76 54204 54279 [AGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAA] HWI-EAS406:5:7:770:317#0 1 1 76 54205 54280 [GGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAG] HWI-EAS406:5:69:1660:1657#0 1 1 76 54206 54281 [GAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGA] HWI-EAS406:7:45:1239:1592#0 1 1 76 54207 54282 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:6:76:718:580#0 1 1 76 54210 54285 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:7:60:1450:766#0 1 1 76 54210 54285 [CCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACA] HWI-EAS406:6:38:1154:1262#0 1 1 76 54212 54287 [TCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCT] HWI-EAS406:6:74:673:1824#0 1 1 76 54216 54291 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:5:63:1141:1104#0 1 1 76 54218 54293 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:7:34:280:1626#0 1 1 76 54218 54293 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:5:74:1362:1863#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:6:15:131:937#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:7:2:622:1398#0 1 1 76 54219 54294 [AGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCAC] HWI-EAS406:6:56:333:1558#0 1 1 76 54220 54295 [GCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACT] HWI-EAS406:6:47:1572:1059#0 1 1 76 54221 54296 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:6:57:985:1452#0 1 1 76 54222 54297 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:7:17:1673:794#0 1 1 76 54222 54297 [GGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCA] HWI-EAS406:7:46:726:746#0 1 1 76 54230 54305 [GCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGG] HWI-EAS406:7:52:668:1877#0 1 1 76 54233 54308 [CTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGG] HWI-EAS406:5:68:960:328#0 1 1 76 54234 54309 [TTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAA] HWI-EAS406:5:30:1622:795#0 1 1 76 54237 54312 [TGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAA] HWI-EAS406:6:66:1712:1855#0 1 1 76 54238 54313 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:5:13:1200:595#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:10:747:660#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:97:806:1606#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:7:89:714:1430#0 1 1 76 54239 54314 [TTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAAT] HWI-EAS406:5:7:1135:1327#0 1 1 76 54240 54315 [AATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGA] HWI-EAS406:7:48:1681:1982#0 1 1 76 54242 54317 [AAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAAC] HWI-EAS406:7:37:1176:1255#0 1 1 76 54248 54323 [AGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACC] HWI-EAS406:7:13:1087:1854#0 1 1 76 54249 54324 [CACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTG] HWI-EAS406:7:70:359:1133#0 1 1 76 54256 54331 [ATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCG] HWI-EAS406:5:29:584:531#0 1 1 76 54260 54335 [TGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGG] HWI-EAS406:6:61:844:753#0 1 1 76 54262 54337 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:6:65:1481:1596#0 1 1 76 54263 54338 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:7:37:704:174#0 1 1 76 54263 54338 [ATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCA] HWI-EAS406:5:51:759:1539#0 1 1 76 54264 54339 [CATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCT] HWI-EAS406:5:20:1604:653#0 1 1 76 54269 54344 [TAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATT] HWI-EAS406:5:4:241:642#0 1 1 76 54277 54352 [AGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAA] HWI-EAS406:5:61:1463:1990#0 1 1 76 54280 54355 [GAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAG] HWI-EAS406:7:45:1358:89#0 1 1 76 54283 54358 [CATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATG] HWI-EAS406:6:28:262:1382#0 1 1 76 54286 54361 [ATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGG] HWI-EAS406:5:55:286:1719#0 1 1 76 54287 54362 [CCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGC] HWI-EAS406:6:16:1456:1430#0 1 1 76 54289 54364 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:5:10:1100:437#0 1 1 76 54292 54367 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:6:17:1373:1181#0 1 1 76 54292 54367 [ACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCC] HWI-EAS406:7:81:1055:997#0 1 1 76 54294 54369 [TTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTG] HWI-EAS406:6:43:297:1857#0 1 1 76 54296 54371 [GACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTG] HWI-EAS406:6:62:846:1980#0 1 1 76 54299 54374 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:30:1260:1613#0 1 1 76 54305 54380 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:97:536:1849#0 1 1 76 54305 54380 [AGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCA] HWI-EAS406:7:46:769:555#0 1 1 76 54306 54381 [GGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCAC] HWI-EAS406:7:47:449:1921#0 1 1 76 54307 54382 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:5:36:1008:1949#0 1 1 76 54310 54385 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:6:72:1417:797#0 1 1 76 54310 54385 [AGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGT] HWI-EAS406:5:48:777:1649#0 1 1 76 54317 54392 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:5:78:1126:1855#0 1 1 76 54321 54396 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:6:75:1658:432#0 1 1 76 54321 54396 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:6:90:1610:226#0 1 1 76 54323 54398 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:7:42:1194:1800#0 1 1 76 54323 54398 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:5:38:460:1961#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:6:2:1374:1550#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:7:36:699:705#0 1 1 76 54324 54399 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:6:82:30:684#0 1 1 76 54325 54400 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:7:16:1727:982#0 1 1 76 54325 54400 [ACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTG] HWI-EAS406:7:46:890:1228#0 1 1 76 54326 54401 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:6:28:1135:1646#0 1 1 76 54327 54402 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:7:56:206:264#0 1 1 76 54327 54402 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:5:91:349:1599#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:62:1521:1923#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:77:1438:1455#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:7:41:1061:217#0 1 1 76 54329 54404 [TGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGA] HWI-EAS406:7:62:904:312#0 1 1 76 54330 54405 [GTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGAC] HWI-EAS406:7:68:559:760#0 1 1 76 54331 54406 [CGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGAC] HWI-EAS406:6:23:1308:1435#0 1 1 76 54334 54409 [GGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGA] HWI-EAS406:5:9:436:1783#0 1 1 76 54336 54411 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:6:70:388:1231#0 1 1 76 54339 54414 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:7:37:360:1575#0 1 1 76 54339 54414 [AGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAG] HWI-EAS406:6:41:1079:775#0 1 1 76 54340 54415 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:6:49:1430:1667#0 1 1 76 54345 54420 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:7:22:1583:762#0 1 1 76 54345 54420 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:38:520:1866#0 1 1 76 54346 54421 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:68:1648:592#0 1 1 76 54346 54421 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:6:62:462:1119#0 1 1 76 54347 54422 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:7:43:701:1133#0 1 1 76 54347 54422 [CATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCT] HWI-EAS406:6:20:1777:1193#0 1 1 76 54349 54424 [TTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCC] HWI-EAS406:7:77:1354:1160#0 1 1 76 54351 54426 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:13:1277:628#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:38:619:664#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:53:322:777#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:92:1767:1364#0 1 1 76 54352 54427 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:14:1063:1857#0 1 1 76 54354 54429 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:64:1260:939#0 1 1 76 54354 54429 [AGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCT] HWI-EAS406:7:36:764:2012#0 1 1 76 54355 54430 [AGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTAC] HWI-EAS406:7:34:393:1997#0 1 1 76 54357 54432 [GGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCAT] HWI-EAS406:6:94:1174:764#0 1 1 76 54361 54436 [TGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTA] HWI-EAS406:6:79:1020:780#0 1 1 76 54376 54451 [CGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTT] HWI-EAS406:6:68:1372:846#0 1 1 76 54406 54481 [GAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTTCATT] HWI-EAS406:6:81:1255:688#0 1 1 76 54410 54485 [TACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGA] HWI-EAS406:7:48:1267:1925#0 1 1 76 54460 54535 [CTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGAGA] HWI-EAS406:6:38:817:259#0 1 1 76 54462 54537 [TTCGGTATCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCAT] HWI-EAS406:7:50:111:1321#0 1 1 76 54505 54580 [TCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCT] HWI-EAS406:7:66:316:1516#0 1 1 76 54512 54587 [CTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTG] HWI-EAS406:6:61:1550:424#0 1 1 76 54515 54590 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:5:67:707:682#0 1 1 76 54520 54595 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:6:41:997:1467#0 1 1 76 54520 54595 [ACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTG] HWI-EAS406:7:1:1038:1756#0 1 1 76 54521 54596 [CTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGT] HWI-EAS406:6:35:1389:139#0 1 1 76 54522 54597 [GACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC] HWI-EAS406:7:64:794:1071#0 1 1 76 54525 54600 [CACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGA] HWI-EAS406:6:48:1546:480#0 1 1 76 54530 54605 [ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAG] HWI-EAS406:5:4:440:970#0 1 1 76 54531 54606 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:6:47:966:1183#0 1 1 76 54533 54608 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:7:53:1319:1765#0 1 1 76 54533 54608 [ACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGC] HWI-EAS406:5:14:980:877#0 1 1 76 54537 54612 [TAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCA] HWI-EAS406:6:60:393:902#0 1 1 76 54543 54618 [ACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATA] HWI-EAS406:5:47:861:1612#0 1 1 76 54545 54620 [CAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCT] HWI-EAS406:6:41:1702:1042#0 1 1 76 54548 54623 [TTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTT] HWI-EAS406:6:36:1192:465#0 1 1 76 54552 54627 [TGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGC] HWI-EAS406:7:45:1771:132#0 1 1 76 54554 54629 [GGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATA] HWI-EAS406:6:55:141:877#0 1 1 76 54561 54636 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:6:41:492:1359#0 1 1 76 54566 54641 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:7:48:1004:1533#0 1 1 76 54566 54641 [AAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAA] HWI-EAS406:6:80:857:2034#0 1 1 76 54567 54642 [TTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAA] HWI-EAS406:7:45:1019:801#0 1 1 76 54573 54648 [TATAAAAAAAAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATT] HWI-EAS406:6:67:1105:1297#0 1 1 76 54635 54710 [AAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCAT] HWI-EAS406:6:72:1189:117#0 1 1 76 54644 54719 [AATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGG] HWI-EAS406:6:55:1581:995#0 1 1 76 54648 54723 [TCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAG] HWI-EAS406:5:35:444:949#0 1 1 76 54650 54725 [CAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGC] HWI-EAS406:6:11:10:647#0 1 1 76 54651 54726 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:6:33:396:1612#0 1 1 76 54654 54729 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:7:44:1288:1818#0 1 1 76 54654 54729 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:57:1445:88#0 1 1 76 54657 54732 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:58:390:1937#0 1 1 76 54657 54732 [TTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATT] HWI-EAS406:5:48:129:1825#0 1 1 76 54658 54733 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:39:1252:1264#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:54:537:1509#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:55:1562:1923#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:56:421:1318#0 1 1 76 54659 54734 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:5:38:1272:690#0 1 1 76 54660 54735 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:6:56:983:1532#0 1 1 76 54660 54735 [TTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAA] HWI-EAS406:5:34:904:776#0 1 1 76 54663 54738 [CATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTT] HWI-EAS406:6:58:1366:282#0 1 1 76 54669 54744 [GCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAA] HWI-EAS406:7:41:752:1291#0 1 1 76 54674 54749 [TTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAA] HWI-EAS406:5:56:960:1374#0 1 1 76 54677 54752 [TTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAAC] HWI-EAS406:5:53:1300:974#0 1 1 76 54678 54753 [AGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTA] HWI-EAS406:6:55:367:1351#0 1 1 76 54682 54757 [GGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTAC] HWI-EAS406:5:36:1085:1378#0 1 1 76 54683 54758 [TCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCA] HWI-EAS406:5:59:801:590#0 1 1 76 54689 54764 [AGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTT] HWI-EAS406:6:55:449:1480#0 1 1 76 54692 54767 [GCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGAC] HWI-EAS406:7:99:1141:692#0 1 1 76 54695 54770 [GCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCA] HWI-EAS406:7:99:1266:107#0 1 1 76 54706 54781 [TTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCT] HWI-EAS406:6:52:219:1214#0 1 1 76 54709 54784 [TGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAA] HWI-EAS406:7:59:687:763#0 1 1 76 54715 54790 [GCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAA] HWI-EAS406:6:68:1355:1044#0 1 1 76 54716 54791 [GATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTT] HWI-EAS406:7:61:1525:1492#0 1 1 76 54730 54805 [TGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTG] HWI-EAS406:7:67:1666:1088#0 1 1 76 54739 54814 [GCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGA] HWI-EAS406:6:62:125:463#0 1 1 76 54740 54815 [TAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTC] HWI-EAS406:7:68:455:849#0 1 1 76 54746 54821 [CTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAA] HWI-EAS406:7:35:236:401#0 1 1 76 54755 54830 [TACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAAC] HWI-EAS406:5:5:1165:1267#0 1 1 76 54756 54831 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:73:1129:1305#0 1 1 76 54760 54835 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:77:78:460#0 1 1 76 54760 54835 [GCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTG] HWI-EAS406:6:13:1406:1469#0 1 1 76 54762 54837 [ACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGAT] HWI-EAS406:6:73:543:282#0 1 1 76 54764 54839 [TGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGC] HWI-EAS406:6:41:1338:1133#0 1 1 76 54767 54842 [GACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCT] HWI-EAS406:7:51:911:1053#0 1 1 76 54768 54843 [ACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTG] HWI-EAS406:6:50:547:1645#0 1 1 76 54769 54844 [TTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTC] HWI-EAS406:7:59:1428:643#0 1 1 76 54775 54850 [TTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCA] HWI-EAS406:5:40:180:1943#0 1 1 76 54776 54851 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:51:744:401#0 1 1 76 54777 54852 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:55:619:899#0 1 1 76 54777 54852 [TGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGT] HWI-EAS406:7:37:1026:1049#0 1 1 76 54778 54853 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:43:715:1593#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:58:722:612#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:6:60:710:286#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:7:34:199:796#0 1 1 76 54783 54858 [TCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGA] HWI-EAS406:5:55:1311:280#0 1 1 76 54784 54859 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:49:1088:1272#0 1 1 76 54788 54863 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:61:216:737#0 1 1 76 54788 54863 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:5:48:640:385#0 1 1 76 54791 54866 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:6:33:476:1558#0 1 1 76 54791 54866 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:54:1410:1105#0 1 1 76 54795 54870 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:76:835:1212#0 1 1 76 54795 54870 [GTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACC] HWI-EAS406:6:32:1548:1312#0 1 1 76 54798 54873 [ATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTT] HWI-EAS406:5:2:991:955#0 1 1 76 54800 54875 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:20:116:1761#0 1 1 76 54801 54876 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:33:875:147#0 1 1 76 54801 54876 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:5:70:698:1812#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:6:51:1031:1841#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:41:946:1778#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:58:1532:1630#0 1 1 76 54802 54877 [TTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTT] HWI-EAS406:7:73:1264:585#0 1 1 76 54804 54879 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:6:52:1044:1885#0 1 1 76 54805 54880 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:7:55:1426:887#0 1 1 76 54805 54880 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:5:46:1126:1531#0 1 1 76 54806 54881 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:7:58:493:1365#0 1 1 76 54806 54881 [GAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAA] HWI-EAS406:7:48:1521:589#0 1 1 76 54807 54882 [CCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTG] HWI-EAS406:6:68:305:556#0 1 1 76 54810 54885 [CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGA] HWI-EAS406:6:43:229:1765#0 1 1 76 54811 54886 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:5:42:1688:1220#0 1 1 76 54812 54887 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:7:40:1030:1731#0 1 1 76 54812 54887 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:42:1673:1475#0 1 1 76 54814 54889 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:70:544:1367#0 1 1 76 54814 54889 [AAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAA] HWI-EAS406:7:61:638:1444#0 1 1 76 54816 54891 [AACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAAC] HWI-EAS406:5:50:1059:1293#0 1 1 76 54817 54892 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:33:426:1747#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:58:1637:922#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:63:658:1278#0 1 1 76 54819 54894 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:5:2:610:578#0 1 1 76 54820 54895 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:7:84:157:423#0 1 1 76 54820 54895 [TTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAAT] HWI-EAS406:6:54:209:1630#0 1 1 76 54822 54897 [TCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATG] HWI-EAS406:7:97:963:1565#0 1 1 76 54823 54898 [CCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGC] HWI-EAS406:7:58:798:1339#0 1 1 76 54824 54899 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:6:3:699:1269#0 1 1 76 54828 54903 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:7:45:1362:1785#0 1 1 76 54828 54903 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1019:766#0 1 1 76 54830 54905 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1589:741#0 1 1 76 54830 54905 [CTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGC] HWI-EAS406:6:42:710:1954#0 1 1 76 54831 54906 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:5:54:381:672#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:39:1669:961#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:60:398:1744#0 1 1 76 54832 54907 [TGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTC] HWI-EAS406:5:49:600:1346#0 1 1 76 54833 54908 [GTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCA] HWI-EAS406:5:35:1496:850#0 1 1 76 54834 54909 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:38:1776:564#0 1 1 76 54835 54910 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:62:513:1672#0 1 1 76 54835 54910 [ATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGT] HWI-EAS406:5:60:635:1717#0 1 1 76 54838 54913 [TTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTC] HWI-EAS406:7:62:535:1449#0 1 1 76 54839 54914 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:5:70:739:325#0 1 1 76 54841 54916 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:6:99:1290:751#0 1 1 76 54841 54916 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:5:67:1236:1544#0 1 1 76 54842 54917 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:7:46:1007:418#0 1 1 76 54842 54917 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:5:35:654:1034#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:6:42:1426:1731#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:7:45:1558:1421#0 1 1 76 54843 54918 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:5:59:1538:1310#0 1 1 76 54846 54921 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:7:38:1321:484#0 1 1 76 54846 54921 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:49:1639:559#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:54:1083:293#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:7:41:621:251#0 1 1 76 54847 54922 [CTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTA] HWI-EAS406:5:53:908:1065#0 1 1 76 54848 54923 [TCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTAC] HWI-EAS406:6:52:118:1211#0 1 1 76 54849 54924 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:46:1037:1066#0 1 1 76 54850 54925 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:50:1764:1024#0 1 1 76 54850 54925 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:5:68:808:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:6:44:1702:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:7:39:995:202#0 1 1 76 54852 54927 [TCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAG] HWI-EAS406:7:73:846:1330#0 1 1 76 54853 54928 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:48:916:907#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:53:1292:1430#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:62:427:1685#0 1 1 76 54854 54929 [TTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTC] HWI-EAS406:7:56:426:1445#0 1 1 76 54855 54930 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:5:6:249:575#0 1 1 76 54856 54931 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:6:56:321:1712#0 1 1 76 54856 54931 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:35:1110:1447#0 1 1 76 54857 54932 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:61:618:1165#0 1 1 76 54857 54932 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:54:67:926#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:61:782:1656#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:6:36:1678:1148#0 1 1 76 54858 54933 [AGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGC] HWI-EAS406:6:23:681:145#0 1 1 76 54860 54935 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:5:53:996:669#0 1 1 76 54861 54936 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:6:48:704:823#0 1 1 76 54861 54936 [CCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTA] HWI-EAS406:6:52:340:757#0 1 1 76 54862 54937 [CAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTAT] HWI-EAS406:7:45:1323:2026#0 1 1 76 54863 54938 [AACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATA] HWI-EAS406:5:48:1248:1119#0 1 1 76 54864 54939 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:5:62:1622:1873#0 1 1 76 54865 54940 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:6:53:781:914#0 1 1 76 54865 54940 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:48:899:831#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1880#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1878#0 1 1 76 54867 54942 [ACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACA] HWI-EAS406:7:55:1111:1721#0 1 1 76 54868 54943 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:56:720:921#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:58:723:506#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:61:919:391#0 1 1 76 54870 54945 [CCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTG] HWI-EAS406:7:45:1333:485#0 1 1 76 54872 54947 [TTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAG] HWI-EAS406:7:47:1544:994#0 1 1 76 54874 54949 [ATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTT] HWI-EAS406:7:56:917:951#0 1 1 76 54876 54951 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:55:825:800#0 1 1 76 54877 54952 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:79:1069:1840#0 1 1 76 54877 54952 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:7:1637:1135#0 1 1 76 54879 54954 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:59:560:1386#0 1 1 76 54879 54954 [AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCAC] HWI-EAS406:5:47:1016:800#0 1 1 76 54881 54956 [ACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACA] HWI-EAS406:6:63:194:819#0 1 1 76 54882 54957 [GAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCT] HWI-EAS406:7:68:201:723#0 1 1 76 54885 54960 [AACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTT] HWI-EAS406:5:53:654:1096#0 1 1 76 54886 54961 [CTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATAC] HWI-EAS406:7:48:1114:1725#0 1 1 76 54892 54967 [TAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCA] HWI-EAS406:5:51:821:485#0 1 1 76 54894 54969 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:6:52:643:1405#0 1 1 76 54898 54973 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:7:53:919:1910#0 1 1 76 54898 54973 [CTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTT] HWI-EAS406:5:62:1517:1950#0 1 1 76 54899 54974 [TCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTT] HWI-EAS406:7:73:1005:1586#0 1 1 76 54901 54976 [CTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGAC] HWI-EAS406:5:43:445:1826#0 1 1 76 54906 54981 [AGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACT] HWI-EAS406:7:48:378:827#0 1 1 76 54927 55002 [GCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAA] HWI-EAS406:7:62:475:1726#0 1 1 76 54934 55009 [CCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGAT] HWI-EAS406:6:44:1278:1465#0 1 1 76 54967 55042 [CTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTG] HWI-EAS406:5:53:476:1464#0 1 1 76 54972 55047 [TTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAG] HWI-EAS406:7:57:1087:444#0 1 1 76 54974 55049 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:5:48:1286:1898#0 1 1 76 54985 55060 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:7:57:598:842#0 1 1 76 54985 55060 [AGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTAC] HWI-EAS406:7:47:1400:1764#0 1 1 76 54995 55070 [TTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAG] HWI-EAS406:5:48:1077:629#0 1 1 76 55014 55089 [CTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGG] HWI-EAS406:5:25:1199:349#0 1 1 76 55020 55095 [TTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGA] HWI-EAS406:5:59:447:1541#0 1 1 76 55022 55097 [TTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGAACGACAAT] HWI-EAS406:7:40:178:165#0 1 1 76 55030 55105 [CTCTATTGTCTAGCTATAGGTGGGGGTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGAC] HWI-EAS406:6:46:1242:756#0 1 1 76 55136 55211 [GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTT] HWI-EAS406:5:96:257:741#0 1 1 76 55161 55236 [GGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTG] HWI-EAS406:6:54:667:1882#0 1 1 76 55198 55273 [TTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCA] HWI-EAS406:5:54:89:1691#0 1 1 76 55215 55290 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5407-5482] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/55348-57402] There are [267] sequences in this contig [GAAAAAGGGGGCTAGCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAA] HWI-EAS406:5:71:963:1069#0 1 1 76 55357 55432 [TGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAG] HWI-EAS406:5:90:718:827#0 1 1 76 55395 55470 [GTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGA] HWI-EAS406:6:50:1068:1124#0 1 1 76 55396 55471 [TTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGAT] HWI-EAS406:7:46:487:1859#0 1 1 76 55397 55472 [GTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGA] HWI-EAS406:7:93:476:1080#0 1 1 76 55421 55496 [AGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAAT] HWI-EAS406:5:75:1472:1372#0 1 1 76 55423 55498 [TTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATT] HWI-EAS406:5:23:784:918#0 1 1 76 55427 55502 [TCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTG] HWI-EAS406:7:54:921:569#0 1 1 76 55428 55503 [AGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTA] HWI-EAS406:5:62:285:936#0 1 1 76 55432 55507 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:5:57:761:2009#0 1 1 76 55439 55514 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:6:36:654:544#0 1 1 76 55439 55514 [TAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTT] HWI-EAS406:5:47:1330:1958#0 1 1 76 55443 55518 [GTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGA] HWI-EAS406:7:46:1751:277#0 1 1 76 55447 55522 [TTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAG] HWI-EAS406:5:48:1050:431#0 1 1 76 55451 55526 [AGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGG] HWI-EAS406:5:56:1503:1888#0 1 1 76 55453 55528 [GGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGT] HWI-EAS406:5:63:235:1522#0 1 1 76 55454 55529 [ATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAG] HWI-EAS406:7:57:718:866#0 1 1 76 55456 55531 [CTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAA] HWI-EAS406:5:63:881:1689#0 1 1 76 55458 55533 [GGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATG] HWI-EAS406:5:56:1714:198#0 1 1 76 55463 55538 [GTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGG] HWI-EAS406:6:50:1063:640#0 1 1 76 55464 55539 [AGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATT] HWI-EAS406:7:91:607:301#0 1 1 76 55469 55544 [TGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAG] HWI-EAS406:5:46:26:1147#0 1 1 76 55472 55547 [GTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTG] HWI-EAS406:7:45:628:1522#0 1 1 76 55477 55552 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:6:87:1690:975#0 1 1 76 55480 55555 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:7:56:137:573#0 1 1 76 55480 55555 [GGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATG] HWI-EAS406:7:68:1555:1689#0 1 1 76 55481 55556 [GTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGC] HWI-EAS406:5:58:682:1738#0 1 1 76 55482 55557 [GACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGA] HWI-EAS406:6:31:1175:1548#0 1 1 76 55486 55561 [CATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGT] HWI-EAS406:5:41:613:1556#0 1 1 76 55488 55563 [AATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCT] HWI-EAS406:7:35:208:92#0 1 1 76 55496 55571 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:6:59:1065:1018#0 1 1 76 55499 55574 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:7:62:287:374#0 1 1 76 55499 55574 [TTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATAT] HWI-EAS406:5:60:1126:457#0 1 1 76 55509 55584 [TGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATT] HWI-EAS406:5:52:1074:921#0 1 1 76 55510 55585 [GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTA] HWI-EAS406:6:59:782:205#0 1 1 76 55511 55586 [ATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATG] HWI-EAS406:6:66:1100:1007#0 1 1 76 55513 55588 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:5:76:618:12#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:6:53:136:1281#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:7:54:741:1995#0 1 1 76 55515 55590 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:5:49:1651:561#0 1 1 76 55517 55592 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:7:42:801:728#0 1 1 76 55517 55592 [AACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTT] HWI-EAS406:6:58:52:1428#0 1 1 76 55532 55607 [TGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTT] HWI-EAS406:5:51:1107:1138#0 1 1 76 55537 55612 [GGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTG] HWI-EAS406:6:51:1655:1268#0 1 1 76 55538 55613 [AGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAA] HWI-EAS406:7:52:109:1569#0 1 1 76 55546 55621 [GCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAAC] HWI-EAS406:6:51:638:1649#0 1 1 76 55547 55622 [TGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACC] HWI-EAS406:6:54:1524:978#0 1 1 76 55551 55626 [CCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTT] HWI-EAS406:6:57:1473:655#0 1 1 76 55569 55644 [AGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCT] HWI-EAS406:5:49:831:1474#0 1 1 76 55577 55652 [TATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAAT] HWI-EAS406:5:51:1389:835#0 1 1 76 55582 55657 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:5:46:340:348#0 1 1 76 55587 55662 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:7:56:1390:1023#0 1 1 76 55587 55662 [CAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAAT] HWI-EAS406:6:51:162:1427#0 1 1 76 55591 55666 [TGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAA] HWI-EAS406:6:56:1638:945#0 1 1 76 55594 55669 [GCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTC] HWI-EAS406:5:48:1495:1062#0 1 1 76 55601 55676 [CTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTT] HWI-EAS406:6:46:718:1420#0 1 1 76 55605 55680 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:491:137#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:874:1585#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:49:1696:321#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:82:1616:1924#0 1 1 76 55606 55681 [GAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACC] HWI-EAS406:5:7:563:689#0 1 1 76 55613 55688 [AAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGA] HWI-EAS406:7:55:573:1885#0 1 1 76 55619 55694 [AACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGAC] HWI-EAS406:7:56:1249:1152#0 1 1 76 55620 55695 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:42:25:1251#0 1 1 76 55623 55698 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:52:505:1902#0 1 1 76 55623 55698 [TTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACC] HWI-EAS406:7:52:999:403#0 1 1 76 55627 55702 [ATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCA] HWI-EAS406:7:46:1627:1353#0 1 1 76 55636 55711 [TATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCAT] HWI-EAS406:5:45:1490:1390#0 1 1 76 55637 55712 [TGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTT] HWI-EAS406:5:50:662:1986#0 1 1 76 55639 55714 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:42:1301:800#0 1 1 76 55643 55718 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:46:1577:1890#0 1 1 76 55643 55718 [CTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTC] HWI-EAS406:7:51:669:996#0 1 1 76 55649 55724 [TTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACC] HWI-EAS406:6:41:993:1893#0 1 1 76 55652 55727 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:40:957:1998#0 1 1 76 55653 55728 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:54:1081:289#0 1 1 76 55653 55728 [TCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATG] HWI-EAS406:6:43:1323:680#0 1 1 76 55657 55732 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:13:1242:1637#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:59:719:373#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:7:61:535:209#0 1 1 76 55660 55735 [GAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGT] HWI-EAS406:5:29:789:396#0 1 1 76 55663 55738 [AAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTT] HWI-EAS406:5:57:1125:1370#0 1 1 76 55667 55742 [AAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTA] HWI-EAS406:5:52:46:1447#0 1 1 76 55668 55743 [AGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAAT] HWI-EAS406:6:47:1369:425#0 1 1 76 55670 55745 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:57:74:1491#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:64:106:1410#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:7:50:633:1788#0 1 1 76 55674 55749 [CTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGA] HWI-EAS406:7:61:1532:1262#0 1 1 76 55678 55753 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:40:151:1251#0 1 1 76 55681 55756 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:54:251:1597#0 1 1 76 55681 55756 [CAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTG] HWI-EAS406:6:55:94:1866#0 1 1 76 55684 55759 [AAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGA] HWI-EAS406:6:28:85:1002#0 1 1 76 55689 55764 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:34:431:1336#0 1 1 76 55693 55768 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:55:1108:653#0 1 1 76 55693 55768 [TTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGA] HWI-EAS406:6:51:1014:1766#0 1 1 76 55713 55788 [GCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGG] HWI-EAS406:7:4:629:1835#0 1 1 76 55878 55953 [CCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTT] HWI-EAS406:5:73:1450:1470#0 1 1 76 55882 55957 [TATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTAT] HWI-EAS406:7:84:817:413#0 1 1 76 55902 55977 [TTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGG] HWI-EAS406:7:27:1672:525#0 1 1 76 55947 56022 [TTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTT] HWI-EAS406:5:90:624:1900#0 1 1 76 55989 56064 [ATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGT] HWI-EAS406:6:25:1007:1215#0 1 1 76 55996 56071 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:61:1428:1819#0 1 1 76 55997 56072 [ATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGA] HWI-EAS406:6:9:412:656#0 1 1 76 56002 56077 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:7:82:415:680#0 1 1 76 56006 56081 [TCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCAC] HWI-EAS406:5:74:590:268#0 1 1 76 56009 56084 [GTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACAT] HWI-EAS406:6:66:426:1137#0 1 1 76 56011 56086 [TAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGA] HWI-EAS406:6:86:83:1170#0 1 1 76 56014 56089 [AGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAG] HWI-EAS406:5:28:1738:1473#0 1 1 76 56015 56090 [TTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC] HWI-EAS406:7:52:567:938#0 1 1 76 56018 56093 [GTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGA] HWI-EAS406:7:36:829:1115#0 1 1 76 56033 56108 [TTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCT] HWI-EAS406:5:22:117:626#0 1 1 76 56046 56121 [CATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAA] HWI-EAS406:6:3:1422:1893#0 1 1 76 56050 56125 [AGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTG] HWI-EAS406:6:75:599:1385#0 1 1 76 56058 56133 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACA] HWI-EAS406:5:67:412:1880#0 1 1 76 56111 56186 [ATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACAC] HWI-EAS406:6:92:1318:383#0 1 1 76 56112 56187 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCA] HWI-EAS406:7:60:1069:1928#0 1 1 76 56117 56192 [CAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCG] HWI-EAS406:5:82:677:1783#0 1 1 76 56122 56197 [AGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTAT] HWI-EAS406:5:16:298:1865#0 1 1 76 56137 56212 [GCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGAC] HWI-EAS406:7:40:1346:617#0 1 1 76 56160 56235 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:5:86:546:731#0 1 1 76 56195 56270 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:7:82:1252:640#0 1 1 76 56195 56270 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:22:1001:501#0 1 1 76 56226 56301 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:68:540:1042#0 1 1 76 56226 56301 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:73:674:1605#0 1 1 76 56237 56312 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:95:794:603#0 1 1 76 56237 56312 [GTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGC] HWI-EAS406:7:35:252:634#0 1 1 76 56244 56319 [CGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCAT] HWI-EAS406:5:8:286:980#0 1 1 76 56250 56325 [CTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCT] HWI-EAS406:7:2:863:788#0 1 1 76 56263 56338 [CGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCG] HWI-EAS406:5:71:330:1040#0 1 1 76 56265 56340 [CGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGA] HWI-EAS406:7:24:1479:1294#0 1 1 76 56271 56346 [AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAG] HWI-EAS406:6:9:352:544#0 1 1 76 56281 56356 [CCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGA] HWI-EAS406:6:26:317:742#0 1 1 76 56284 56359 [CGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGAC] HWI-EAS406:5:15:749:198#0 1 1 76 56285 56360 [ACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGA] HWI-EAS406:5:48:199:1803#0 1 1 76 56292 56367 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:6:74:1789:781#0 1 1 76 56305 56380 [ACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTAT] HWI-EAS406:5:68:91:1454#0 1 1 76 56310 56385 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:5:39:1537:832#0 1 1 76 56311 56386 [GAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGG] HWI-EAS406:6:3:1014:489#0 1 1 76 56312 56387 [CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGA] HWI-EAS406:7:63:606:2004#0 1 1 76 56317 56392 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:58:773:1386#0 1 1 76 56322 56397 [CACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGC] HWI-EAS406:6:5:746:1848#0 1 1 76 56328 56403 [TCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGA] HWI-EAS406:6:36:329:384#0 1 1 76 56338 56413 [CAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAG] HWI-EAS406:6:68:310:1837#0 1 1 76 56352 56427 [GCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGAC] HWI-EAS406:6:15:1389:1537#0 1 1 76 56356 56431 [CACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGACCCAC] HWI-EAS406:5:70:1186:1514#0 1 1 76 56360 56435 [GAGTGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:5:16:713:561#0 1 1 76 56412 56487 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:86:116:1250#0 1 1 76 56451 56526 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:7:22:1229:1224#0 1 1 76 56456 56531 [TGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTC] HWI-EAS406:5:75:885:1647#0 1 1 76 56465 56540 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:99:1323:2030#0 1 1 76 56471 56546 [GCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCAT] HWI-EAS406:6:36:1768:749#0 1 1 76 56472 56547 [ACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTAT] HWI-EAS406:5:64:1031:433#0 1 1 76 56475 56550 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:54:449:1311#0 1 1 76 56480 56555 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:821:1114#0 1 1 76 56481 56556 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:51:119:1731#0 1 1 76 56481 56556 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:6:54:1070:416#0 1 1 76 56623 56698 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:5:76:1124:1673#0 1 1 76 56655 56730 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:6:86:910:364#0 1 1 76 56655 56730 [CTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAA] HWI-EAS406:5:77:1007:635#0 1 1 76 56669 56744 [TCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAAT] HWI-EAS406:5:6:1619:1892#0 1 1 76 56670 56745 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:75:896:271#0 1 1 76 56680 56755 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:6:93:695:831#0 1 1 76 56683 56758 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:7:47:1300:725#0 1 1 76 56683 56758 [TGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGA] HWI-EAS406:5:9:1290:1387#0 1 1 76 56690 56765 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:19:599:1637#0 1 1 76 56692 56767 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:42:1233:1944#0 1 1 76 56693 56768 [GTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGG] HWI-EAS406:7:43:1340:1098#0 1 1 76 56697 56772 [TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGAT] HWI-EAS406:7:77:529:595#0 1 1 76 56701 56776 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1026:1702#0 1 1 76 56702 56777 [TGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAG] HWI-EAS406:7:74:472:989#0 1 1 76 56704 56779 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:38:1310:724#0 1 1 76 56708 56783 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:36:1704:1002#0 1 1 76 56709 56784 [CTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATC] HWI-EAS406:5:32:857:416#0 1 1 76 56713 56788 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:13:567:1632#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:72:1130:1035#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:11:320:1138#0 1 1 76 56716 56791 [TTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGG] HWI-EAS406:5:29:1531:1113#0 1 1 76 56721 56796 [TCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAA] HWI-EAS406:6:70:94:850#0 1 1 76 56723 56798 [TGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG] HWI-EAS406:5:56:283:533#0 1 1 76 56731 56806 [TTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTA] HWI-EAS406:7:54:629:1409#0 1 1 76 56734 56809 [TAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAG] HWI-EAS406:5:69:1170:963#0 1 1 76 56735 56810 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:5:59:659:573#0 1 1 76 56739 56814 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:7:10:1271:1176#0 1 1 76 56739 56814 [GAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGAT] HWI-EAS406:7:55:717:1077#0 1 1 76 56741 56816 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:5:49:951:1788#0 1 1 76 56742 56817 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:6:44:1440:809#0 1 1 76 56742 56817 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:5:61:1761:440#0 1 1 76 56743 56818 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:5:56:427:636#0 1 1 76 56746 56821 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:45:818:1084#0 1 1 76 56746 56821 [ATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGAT] HWI-EAS406:5:48:1421:738#0 1 1 76 56751 56826 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:5:46:1433:471#0 1 1 76 56753 56828 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:6:46:758:450#0 1 1 76 56753 56828 [TTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTT] HWI-EAS406:6:85:924:1183#0 1 1 76 56757 56832 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:457:1255#0 1 1 76 56760 56835 [CATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGAT] HWI-EAS406:6:51:1250:1394#0 1 1 76 56768 56843 [ATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATG] HWI-EAS406:7:43:348:1667#0 1 1 76 56769 56844 [TGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAG] HWI-EAS406:7:51:693:440#0 1 1 76 56780 56855 [CCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATA] HWI-EAS406:7:61:270:674#0 1 1 76 56790 56865 [TTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTT] HWI-EAS406:6:100:780:1104#0 1 1 76 56793 56868 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:51:375:1103#0 1 1 76 56799 56874 [GAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATC] HWI-EAS406:7:43:1468:442#0 1 1 76 56812 56887 [TAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAAT] HWI-EAS406:7:43:612:1832#0 1 1 76 56817 56892 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:3:328:1741#0 1 1 76 56828 56903 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:51:928:1230#0 1 1 76 56828 56903 [GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAG] HWI-EAS406:6:61:1150:157#0 1 1 76 56841 56916 [ATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGT] HWI-EAS406:7:45:1719:1574#0 1 1 76 56842 56917 [TTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTG] HWI-EAS406:7:22:1656:1000#0 1 1 76 56847 56922 [TATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTC] HWI-EAS406:5:40:782:1903#0 1 1 76 56864 56939 [TTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACC] HWI-EAS406:7:47:1399:1840#0 1 1 76 56867 56942 [CTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGA] HWI-EAS406:7:36:1214:128#0 1 1 76 56870 56945 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:6:67:659:674#0 1 1 76 56883 56958 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:5:34:482:363#0 1 1 76 56884 56959 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:6:31:1738:245#0 1 1 76 56884 56959 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:5:17:980:1498#0 1 1 76 56890 56965 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:6:43:1069:537#0 1 1 76 56890 56965 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:6:60:1237:1921#0 1 1 76 56892 56967 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:7:62:1556:1902#0 1 1 76 56892 56967 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:45:845:1882#0 1 1 76 56893 56968 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:10:320:1442#0 1 1 76 56894 56969 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:85:939:1848#0 1 1 76 56894 56969 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:6:21:964:532#0 1 1 76 56895 56970 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:7:11:715:1562#0 1 1 76 56895 56970 [TCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGAC] HWI-EAS406:6:83:1490:1557#0 1 1 76 56896 56971 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:5:83:1238:1840#0 1 1 76 56897 56972 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:6:51:1716:996#0 1 1 76 56897 56972 [TTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAA] HWI-EAS406:7:30:372:1304#0 1 1 76 56898 56973 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:19:739:163#0 1 1 76 56899 56974 [CTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACT] HWI-EAS406:6:99:1305:973#0 1 1 76 56900 56975 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:5:68:1372:1083#0 1 1 76 56902 56977 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:7:21:892:1201#0 1 1 76 56902 56977 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:42:1519:306#0 1 1 76 56903 56978 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:43:649:1817#0 1 1 76 56903 56978 [TTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT] HWI-EAS406:5:48:1749:825#0 1 1 76 56905 56980 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:63:1363:862#0 1 1 76 56906 56981 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:7:49:763:1786#0 1 1 76 56907 56982 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:6:80:1615:1056#0 1 1 76 56909 56984 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:36:1452:570#0 1 1 76 56911 56986 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:65:397:1874#0 1 1 76 56911 56986 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:7:71:215:1096#0 1 1 76 56914 56989 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:5:94:1025:901#0 1 1 76 56917 56992 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:6:51:1633:1293#0 1 1 76 56917 56992 [TGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTAT] HWI-EAS406:5:4:1293:1664#0 1 1 76 56918 56993 [GTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATA] HWI-EAS406:7:54:1634:1722#0 1 1 76 56919 56994 [TTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATAC] HWI-EAS406:6:67:934:751#0 1 1 76 56920 56995 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:47:490:994#0 1 1 76 56922 56997 [TTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCA] HWI-EAS406:5:44:1294:1484#0 1 1 76 56927 57002 [TAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAA] HWI-EAS406:5:84:526:435#0 1 1 76 56928 57003 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:45:1491:692#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:89:1540:722#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:10:510:1378#0 1 1 76 56929 57004 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:5:40:1126:1227#0 1 1 76 56938 57013 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:70:23:1316#0 1 1 76 56938 57013 [CACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTT] HWI-EAS406:5:63:428:752#0 1 1 76 56939 57014 [ACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTG] HWI-EAS406:6:61:1137:1230#0 1 1 76 56940 57015 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:5:56:1494:1229#0 1 1 76 56943 57018 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:5:49:1013:1360#0 1 1 76 56957 57032 [AAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGC] HWI-EAS406:7:14:1303:1511#0 1 1 76 56959 57034 [CTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGTA] HWI-EAS406:7:55:713:259#0 1 1 76 56976 57051 [GATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTA] HWI-EAS406:5:53:850:1541#0 1 1 76 57029 57104 [TGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCA] HWI-EAS406:7:56:1093:1703#0 1 1 76 57044 57119 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:86:1123:1484#0 1 1 76 57054 57129 [CTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCT] HWI-EAS406:5:69:567:774#0 1 1 76 57059 57134 [TGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAG] HWI-EAS406:6:44:1168:1730#0 1 1 76 57093 57168 [ATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTG] HWI-EAS406:7:52:50:1064#0 1 1 76 57097 57172 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:7:52:1393:1554#0 1 1 76 57100 57175 [GTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTG] HWI-EAS406:6:56:338:841#0 1 1 76 57101 57176 [TCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTT] HWI-EAS406:7:58:819:1006#0 1 1 76 57117 57192 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:5:36:8:1006#0 1 1 76 57122 57197 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/58204-58279] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5838-5980] There are [3] sequences in this contig [CCAGGAACCAGACTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGAC] HWI-EAS406:6:65:880:1505#0 1 1 76 5846 5921 [CTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCT] HWI-EAS406:5:68:1151:38#0 1 1 76 5858 5933 [CTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTTTTGGCCACAG] HWI-EAS406:6:51:497:1007#0 1 1 76 5885 5960 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59180-59255] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59564-59639] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6019-6218] There are [3] sequences in this contig [CTGCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTAATCC] HWI-EAS406:5:47:756:602#0 1 1 76 6019 6094 [CAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGG] HWI-EAS406:6:1:1675:1977#0 1 1 76 6118 6193 [AACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGA] HWI-EAS406:7:67:608:1846#0 1 1 76 6143 6218 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/60981-61108] There are [3] sequences in this contig [CCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCC] HWI-EAS406:7:49:917:519#0 1 1 76 60981 61056 [GCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCAT] HWI-EAS406:5:52:235:104#0 1 1 76 61008 61083 [CTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGC] HWI-EAS406:6:63:1158:1175#0 1 1 76 61033 61108 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61200-61321] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61378-61517] There are [3] sequences in this contig [CCTCTCAGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAA] HWI-EAS406:7:100:1619:467#0 1 1 76 61378 61453 [AGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAG] HWI-EAS406:7:53:1655:1631#0 1 1 76 61384 61459 [TTGGGTTCACAAGTACAGCTCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTT] HWI-EAS406:7:97:876:768#0 1 1 76 61442 61517 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61593-61724] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62569-62649] There are [2] sequences in this contig [GGTATGTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGC] HWI-EAS406:7:28:1332:725#0 1 1 76 62569 62644 [GTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGC] HWI-EAS406:5:33:728:1075#0 1 1 76 62574 62649 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62662-63010] There are [4] sequences in this contig [TTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCTTATCTTACTCCTACTAATACATAC] HWI-EAS406:7:60:936:1903#0 1 1 76 62669 62744 [TATAAGCTTATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAG] HWI-EAS406:6:4:1187:950#0 1 1 76 62713 62788 [CTAGGAAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAA] HWI-EAS406:6:86:576:1275#0 1 1 76 62839 62914 [AAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAG] HWI-EAS406:5:34:1205:1314#0 1 1 76 62844 62919 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63019-63141] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63695-63788] There are [2] sequences in this contig [GCTTTACAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC] HWI-EAS406:6:74:1616:1302#0 1 1 76 63695 63770 [AGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTCTCAGGTCCGTTTTAGTCT] HWI-EAS406:7:50:829:192#0 1 1 76 63713 63788 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63912-64054] There are [2] sequences in this contig [GTGTGTTAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAA] HWI-EAS406:7:40:667:1044#0 1 1 76 63973 64048 [TAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGATCTC] HWI-EAS406:7:82:846:2011#0 1 1 76 63979 64054 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64197-64278] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64487-64586] There are [2] sequences in this contig [AACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTG] HWI-EAS406:7:73:1763:946#0 1 1 76 64487 64562 [TTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCT] HWI-EAS406:6:16:1080:412#0 1 1 76 64511 64586 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64588-64674] There are [2] sequences in this contig [TTGTTCATTTTTAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGA] HWI-EAS406:6:68:677:1734#0 1 1 76 64588 64663 [TAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAG] HWI-EAS406:7:55:962:1888#0 1 1 76 64599 64674 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64700-64901] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6476-6551] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66034-66109] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66927-67002] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67589-67700] There are [2] sequences in this contig [CACCGCTCGCTTCTCTTTAAATGCTTCTCCAGTTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAA] HWI-EAS406:5:59:105:1182#0 1 1 76 67589 67664 [ATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGGTCGTTTGTAC] HWI-EAS406:6:34:1644:1455#0 1 1 76 67625 67700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67814-67915] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6801-6876] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69468-69657] There are [4] sequences in this contig [TCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGT] HWI-EAS406:6:14:421:1719#0 1 1 76 69468 69543 [CAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTC] HWI-EAS406:7:53:214:645#0 1 1 76 69477 69552 [AAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTCTTCTT] HWI-EAS406:7:79:858:1175#0 1 1 76 69510 69585 [GACTCTTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCACG] HWI-EAS406:6:7:930:1662#0 1 1 76 69576 69651 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69676-69917] There are [4] sequences in this contig [GAATCCTTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA] HWI-EAS406:7:11:1781:2005#0 1 1 76 69785 69860 [CAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGA] HWI-EAS406:7:56:1325:830#0 1 1 76 69820 69895 [AAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCG] HWI-EAS406:7:15:856:368#0 1 1 76 69840 69915 [GCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGT] HWI-EAS406:7:66:201:1411#0 1 1 76 69842 69917 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69978-70113] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/70804-71412] There are [13] sequences in this contig [GCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTC] HWI-EAS406:5:35:525:525#0 1 1 76 70860 70935 [TTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTAC] HWI-EAS406:7:50:1763:639#0 1 1 76 70882 70957 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:5:52:15:1698#0 1 1 76 70894 70969 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:6:1:212:802#0 1 1 76 70894 70969 [GCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGCACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAA] HWI-EAS406:6:46:878:1641#0 1 1 76 70941 71016 [TCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAA] HWI-EAS406:5:67:1116:707#0 1 1 76 71002 71077 [GATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCAC] HWI-EAS406:7:82:1452:1150#0 1 1 76 71026 71101 [AATCTTGCTGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAA] HWI-EAS406:7:14:1272:786#0 1 1 76 71111 71186 [TGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGA] HWI-EAS406:6:73:966:569#0 1 1 76 71119 71194 [TATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGACGCTAATGT] HWI-EAS406:6:23:116:1828#0 1 1 76 71128 71203 [AACACAACTCTCTTGTTGGTCACAATGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATA] HWI-EAS406:6:65:1248:1907#0 1 1 76 71236 71311 [TCATAGCAATCAGATAAAGCGAATTTTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCG] HWI-EAS406:7:71:632:736#0 1 1 76 71296 71371 [TTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAA] HWI-EAS406:6:14:583:1629#0 1 1 76 71321 71396 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71460-71625] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71712-72235] There are [9] sequences in this contig [CAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCA] HWI-EAS406:6:74:340:1085#0 1 1 76 71712 71787 [GATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATC] HWI-EAS406:6:69:273:955#0 1 1 76 71730 71805 [CCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAAAAAATCCAAT] HWI-EAS406:7:76:136:1326#0 1 1 76 71755 71830 [TCCAATTCCATCAACAGTCAATGAGAAAAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCC] HWI-EAS406:6:4:1341:1767#0 1 1 76 71794 71869 [TTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCT] HWI-EAS406:6:73:657:928#0 1 1 76 71845 71920 [GAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCTACAGGC] HWI-EAS406:6:69:608:788#0 1 1 76 71851 71926 [TACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACACCCTGTGCTAGGGC] HWI-EAS406:7:39:1441:509#0 1 1 76 71898 71973 [CCTGATACCCCGAAGGCAACACCCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCC] HWI-EAS406:5:42:630:1855#0 1 1 76 71939 72014 [TAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAGCCAATGTTGAGCTAGTCATACCCAAA] HWI-EAS406:7:3:247:1105#0 1 1 76 72121 72196 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72334-72409] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/7238-7313] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72551-72721] There are [3] sequences in this contig [GACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACAACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAA] HWI-EAS406:5:63:280:2016#0 1 1 76 72551 72626 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:684:1767#0 1 1 76 72623 72698 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:687:1768#0 1 1 76 72623 72698 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72764-72920] There are [3] sequences in this contig [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:58:933:1075#0 1 1 76 72764 72839 [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:96:138:1491#0 1 1 76 72764 72839 [GACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCC] HWI-EAS406:5:32:1193:610#0 1 1 76 72783 72858 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73189-73264] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73618-73693] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/74319-74394] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75333-75500] There are [3] sequences in this contig [GCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCATTTTTCTTATTTCGAAATG] HWI-EAS406:6:62:1449:2033#0 1 1 76 75333 75408 [TCGTCATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAA] HWI-EAS406:6:48:1707:1089#0 1 1 76 75384 75459 [CATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAGTGT] HWI-EAS406:7:65:460:691#0 1 1 76 75388 75463 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75502-75924] There are [5] sequences in this contig [CATAGATTCTGATCATCTTCGTCAAAACTTTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCT] HWI-EAS406:5:59:1508:1093#0 1 1 76 75502 75577 [AACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAA] HWI-EAS406:5:58:256:560#0 1 1 76 75611 75686 [AAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGAC] HWI-EAS406:5:46:1388:1875#0 1 1 76 75627 75702 [GAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAG] HWI-EAS406:7:17:923:1142#0 1 1 76 75653 75728 [AATGTGTTCCTAGCTGATGTGAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCA] HWI-EAS406:5:81:885:1582#0 1 1 76 75791 75866 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76023-76205] There are [2] sequences in this contig [GTATATCTTTAGCGATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACT] HWI-EAS406:6:79:1647:121#0 1 1 76 76077 76152 [TTATTATGTCCGGGAGAAGTACTGCTTATCTGAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATAC] HWI-EAS406:7:47:560:1036#0 1 1 76 76130 76205 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76211-76536] There are [5] sequences in this contig [TCAGACTCTGATTCACAAGCAACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCAT] HWI-EAS406:5:49:1688:659#0 1 1 76 76211 76286 [AACTCCAAGAATATTCAGAACCATCAGTCATTACACACTTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCC] HWI-EAS406:5:45:1087:1438#0 1 1 76 76263 76338 [ACAAGGGAACCGGTAATATATCGCCAGGCTTCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTC] HWI-EAS406:5:76:620:1542#0 1 1 76 76341 76416 [ATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGA] HWI-EAS406:5:25:1291:1892#0 1 1 76 76390 76465 [TGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGAGAC] HWI-EAS406:6:94:1284:238#0 1 1 76 76393 76468 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76543-76712] There are [2] sequences in this contig [GCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCCAAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATT] HWI-EAS406:6:32:835:791#0 1 1 76 76547 76622 [GATTTTCCTTGCTCCACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTT] HWI-EAS406:7:47:562:1860#0 1 1 76 76637 76712 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76854-76955] There are [2] sequences in this contig [CAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTG] HWI-EAS406:7:59:843:1966#0 1 1 76 76863 76938 [CCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTGTCCTTCATATATCGTGC] HWI-EAS406:6:30:986:1830#0 1 1 76 76880 76955 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77243-77318] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77350-77456] There are [2] sequences in this contig [ATGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAG] HWI-EAS406:6:2:544:249#0 1 1 76 77350 77425 [AGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAGTATTCAGGGGATAAAATAAACATTAGGCCAA] HWI-EAS406:7:9:136:308#0 1 1 76 77381 77456 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77795-77870] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77917-77992] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/78794-78971] There are [3] sequences in this contig [GCCATTATTTTCACGCAGATAAGTACGCCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAA] HWI-EAS406:7:65:1503:1068#0 1 1 76 78794 78869 [CCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCCAATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCA] HWI-EAS406:7:74:546:1750#0 1 1 76 78856 78931 [CTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAATCTCCTTGGTGG] HWI-EAS406:7:58:577:1389#0 1 1 76 78896 78971 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79009-79502] There are [9] sequences in this contig [TCATTGCCTATGCCCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAG] HWI-EAS406:6:94:925:835#0 1 1 76 79009 79084 [CCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACC] HWI-EAS406:5:25:1538:777#0 1 1 76 79022 79097 [TCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGCTACCATATCGCTAC] HWI-EAS406:6:54:1199:1064#0 1 1 76 79039 79114 [CTTCAGCAAAACGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGA] HWI-EAS406:6:30:384:1985#0 1 1 76 79079 79154 [CGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATG] HWI-EAS406:7:50:1278:1079#0 1 1 76 79090 79165 [CAACACAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTTT] HWI-EAS406:6:32:1409:445#0 1 1 76 79166 79241 [TCCAGAAAGATATACTTTCAACTCCTCTGTGTTTCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAG] HWI-EAS406:5:40:817:1242#0 1 1 76 79208 79283 [TAATTAACATGCACCTTGCCACCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAAC] HWI-EAS406:7:59:1471:766#0 1 1 76 79360 79435 [ATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAAATAAGCCATCCCCTCAGTAATGATTGGTCTC] HWI-EAS406:5:27:1356:1536#0 1 1 76 79406 79481 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79560-79686] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80173-80264] There are [2] sequences in this contig [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:40:61:86#0 1 1 76 80173 80248 [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:84:334:829#0 1 1 76 80173 80248 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80381-80456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80474-80593] There are [2] sequences in this contig [CCTTTAGTAGGTGGTTTGTCCCTGCCATGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTA] HWI-EAS406:7:31:547:1433#0 1 1 76 80474 80549 [TGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGATGACTAACAATGGTGTCAAATAGT] HWI-EAS406:7:51:987:613#0 1 1 76 80518 80593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80693-80806] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81002-81160] There are [6] sequences in this contig [CAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGATAAAACTATGAACAACA] HWI-EAS406:7:8:677:936#0 1 1 76 81002 81077 [AGAAGGAAAGACGATAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACT] HWI-EAS406:5:55:1278:821#0 1 1 76 81047 81122 [AAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAA] HWI-EAS406:6:7:456:1419#0 1 1 76 81063 81138 [ACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACA] HWI-EAS406:7:66:679:662#0 1 1 76 81065 81140 [GATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGA] HWI-EAS406:7:11:328:1615#0 1 1 76 81078 81153 [AAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGAGAAGCCA] HWI-EAS406:5:72:1783:898#0 1 1 76 81085 81160 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81206-81367] There are [2] sequences in this contig [AGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCCTGCAGCAGCGG] HWI-EAS406:7:41:368:198#0 1 1 76 81206 81281 [TCTGGGCCGATAGCCTGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCC] HWI-EAS406:5:63:1251:970#0 1 1 76 81256 81331 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81438-81567] There are [3] sequences in this contig [TGTTTGGGGACTTTATGATATTCTTCCAACACAACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCA] HWI-EAS406:6:49:1020:1226#0 1 1 76 81449 81524 [CCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCAT] HWI-EAS406:7:59:585:870#0 1 1 76 81489 81564 [CTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCATAAT] HWI-EAS406:6:69:1662:1635#0 1 1 76 81492 81567 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81782-81899] There are [4] sequences in this contig [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:57:1435:640#0 1 1 76 81793 81868 [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:70:465:1192#0 1 1 76 81793 81868 [CAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGAC] HWI-EAS406:5:9:917:255#0 1 1 76 81809 81884 [CCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATT] HWI-EAS406:7:86:763:397#0 1 1 76 81824 81899 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81934-82330] There are [9] sequences in this contig [ACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATAC] HWI-EAS406:5:7:1488:1277#0 1 1 76 81934 82009 [GGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAAC] HWI-EAS406:5:39:1072:726#0 1 1 76 81944 82019 [ATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCA] HWI-EAS406:5:29:1064:1350#0 1 1 76 81975 82050 [GCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGG] HWI-EAS406:6:46:915:308#0 1 1 76 81992 82067 [TTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCT] HWI-EAS406:7:73:614:1639#0 1 1 76 82001 82076 [GGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCG] HWI-EAS406:7:7:475:933#0 1 1 76 82014 82089 [AATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATC] HWI-EAS406:7:4:976:1341#0 1 1 76 82039 82114 [AAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATCTCTGATCTCCA] HWI-EAS406:7:92:1125:1958#0 1 1 76 82050 82125 [CCTACAGCAAGTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAA] HWI-EAS406:7:61:1097:746#0 1 1 76 82171 82246 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82392-82467] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82759-82857] There are [2] sequences in this contig [TATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGC] HWI-EAS406:7:74:1207:352#0 1 1 76 82759 82834 [CAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACA] HWI-EAS406:5:55:744:216#0 1 1 76 82782 82857 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82919-83082] There are [3] sequences in this contig [TTCAGTTTGAGCAGCATTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCA] HWI-EAS406:5:71:1520:1633#0 1 1 76 82919 82994 [TTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGG] HWI-EAS406:6:68:737:221#0 1 1 76 82935 83010 [ATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGC] HWI-EAS406:5:50:1274:668#0 1 1 76 82940 83015 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83150-83237] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83601-83697] There are [3] sequences in this contig [TCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAA] HWI-EAS406:7:47:909:638#0 1 1 76 83601 83676 [ACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGT] HWI-EAS406:5:57:263:916#0 1 1 76 83607 83682 [GAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATC] HWI-EAS406:5:56:421:1257#0 1 1 76 83622 83697 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84236-84447] There are [4] sequences in this contig [ATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGA] HWI-EAS406:5:97:1523:1879#0 1 1 76 84236 84311 [ATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGA] HWI-EAS406:6:51:787:579#0 1 1 76 84248 84323 [GCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTACGGAATACCTTGGATATTGATAGT] HWI-EAS406:5:11:1432:1580#0 1 1 76 84299 84374 [AGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAAAAGTATAATCTAACCTTAATATCTGTT] HWI-EAS406:7:56:662:2012#0 1 1 76 84372 84447 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84452-84888] There are [7] sequences in this contig [GACAATGTCGCAAACTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGA] HWI-EAS406:5:73:271:319#0 1 1 76 84463 84538 [CTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGAT] HWI-EAS406:7:60:710:960#0 1 1 76 84477 84552 [CATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAA] HWI-EAS406:5:43:480:1536#0 1 1 76 84519 84594 [TAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACT] HWI-EAS406:5:40:1113:280#0 1 1 76 84548 84623 [AAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAG] HWI-EAS406:7:53:1638:399#0 1 1 76 84568 84643 [AGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCA] HWI-EAS406:5:19:278:1957#0 1 1 76 84579 84654 [CTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGA] HWI-EAS406:5:12:647:1325#0 1 1 76 84610 84685 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85154-85229] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85786-85861] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86083-86165] There are [2] sequences in this contig [TTCGAGAAGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTT] HWI-EAS406:7:98:985:875#0 1 1 76 86083 86158 [AGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGT] HWI-EAS406:7:27:843:73#0 1 1 76 86090 86165 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86285-86406] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86740-87073] There are [6] sequences in this contig [TTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATG] HWI-EAS406:6:50:544:1942#0 1 1 76 86740 86815 [AAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAAT] HWI-EAS406:5:24:899:1507#0 1 1 76 86778 86853 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:5:27:651:758#0 1 1 76 86889 86964 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:7:36:939:388#0 1 1 76 86889 86964 [CAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAA] HWI-EAS406:6:44:1640:635#0 1 1 76 86963 87038 [AAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGT] HWI-EAS406:5:21:792:990#0 1 1 76 86982 87057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87100-87175] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87411-87579] There are [5] sequences in this contig [GTTCACGCTTATAGTCGTCCTGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCAT] HWI-EAS406:5:40:963:792#0 1 1 76 87411 87486 [TTTAGAAAATTCAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAG] HWI-EAS406:5:29:1062:180#0 1 1 76 87468 87543 [CAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGT] HWI-EAS406:6:33:1466:1038#0 1 1 76 87479 87554 [ATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAA] HWI-EAS406:6:74:560:575#0 1 1 76 87485 87560 [AAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT] HWI-EAS406:7:36:1097:534#0 1 1 76 87495 87570 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87843-87918] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88084-88247] There are [3] sequences in this contig [CAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAA] HWI-EAS406:5:28:328:364#0 1 1 76 88084 88159 [ACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAAT] HWI-EAS406:7:46:1492:580#0 1 1 76 88096 88171 [TCCATCAATAGAGTCCTTCAGATACTGCAGGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATA] HWI-EAS406:6:28:859:934#0 1 1 76 88172 88247 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88301-88432] There are [2] sequences in this contig [TTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGG] HWI-EAS406:7:81:841:1025#0 1 1 76 88301 88376 [CAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGC] HWI-EAS406:7:15:996:61#0 1 1 76 88304 88379 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88501-88726] There are [4] sequences in this contig [GCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCTTAATGGAGCAATTAAGATCTTCACAT] HWI-EAS406:5:44:57:1786#0 1 1 76 88501 88576 [TAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGAAGCATTACGCCTCATGTGTACCTCCAAGAATGTA] HWI-EAS406:7:54:1671:598#0 1 1 76 88579 88654 [TACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCT] HWI-EAS406:6:1:546:1653#0 1 1 76 88639 88714 [TGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCTATGACTTTATTT] HWI-EAS406:6:95:686:1267#0 1 1 76 88651 88726 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88728-89026] There are [7] sequences in this contig [TCCCAATCTTCATCGGTGAATTGAACAGATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATAC] HWI-EAS406:5:76:1379:738#0 1 1 76 88733 88808 [AGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTG] HWI-EAS406:7:31:1487:604#0 1 1 76 88854 88929 [TTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTC] HWI-EAS406:5:48:1276:1279#0 1 1 76 88870 88945 [TAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAA] HWI-EAS406:6:61:58:1492#0 1 1 76 88900 88975 [GTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAAT] HWI-EAS406:7:67:1335:152#0 1 1 76 88906 88981 [GCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGA] HWI-EAS406:5:96:791:1904#0 1 1 76 88929 89004 [ACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTA] HWI-EAS406:6:46:1014:1849#0 1 1 76 88951 89026 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/8886-8961] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89272-89444] There are [2] sequences in this contig [ACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTA] HWI-EAS406:5:46:1549:1266#0 1 1 76 89272 89347 [ACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGG] HWI-EAS406:7:42:1654:231#0 1 1 76 89310 89385 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89473-89625] There are [2] sequences in this contig [CTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAA] HWI-EAS406:5:54:722:1131#0 1 1 76 89549 89624 [TCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAAA] HWI-EAS406:5:47:1791:1774#0 1 1 76 89550 89625 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89972-90047] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/90365-90440] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91000-91075] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91078-91153] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92058-92240] There are [3] sequences in this contig [ATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTAGAGAGCGGATGGA] HWI-EAS406:6:64:403:2030#0 1 1 76 92058 92133 [GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTAGGAGGA] HWI-EAS406:6:73:248:1987#0 1 1 76 92121 92196 [ATCGTTTCCTCAAGAACACGCAAGTAGGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACG] HWI-EAS406:5:52:985:957#0 1 1 76 92165 92240 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92249-92456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95489-95564] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95826-96392] There are [46] sequences in this contig [ATGTTAGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCA] HWI-EAS406:5:51:460:1579#0 1 1 76 95826 95901 [TTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAG] HWI-EAS406:5:51:996:890#0 1 1 76 95836 95911 [TTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAA] HWI-EAS406:6:44:424:582#0 1 1 76 95838 95913 [CCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTAC] HWI-EAS406:7:55:1683:1558#0 1 1 76 95847 95922 [AAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAA] HWI-EAS406:5:37:874:1703#0 1 1 76 95855 95930 [AAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAAT] HWI-EAS406:7:60:861:1898#0 1 1 76 95871 95946 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:5:45:983:1815#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:6:50:725:1008#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:7:47:1467:1449#0 1 1 76 95873 95948 [TTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATT] HWI-EAS406:5:75:1577:1211#0 1 1 76 95875 95950 [GTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTA] HWI-EAS406:5:62:1054:483#0 1 1 76 95877 95952 [AGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTT] HWI-EAS406:5:3:1196:1080#0 1 1 76 95885 95960 [AGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAAC] HWI-EAS406:6:35:243:859#0 1 1 76 95903 95978 [GCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACT] HWI-EAS406:7:48:1680:776#0 1 1 76 95904 95979 [CAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAA] HWI-EAS406:5:84:623:1401#0 1 1 76 95916 95991 [AATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTT] HWI-EAS406:6:48:520:969#0 1 1 76 95929 96004 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:6:40:230:1515#0 1 1 76 95931 96006 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:7:47:1458:1361#0 1 1 76 95931 96006 [AAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTG] HWI-EAS406:7:54:1184:624#0 1 1 76 95934 96009 [TTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGC] HWI-EAS406:7:97:1095:736#0 1 1 76 95960 96035 [ACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTG] HWI-EAS406:5:51:1023:405#0 1 1 76 95977 96052 [TAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGG] HWI-EAS406:5:43:1053:715#0 1 1 76 95979 96054 [GCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCA] HWI-EAS406:5:48:1136:1031#0 1 1 76 95985 96060 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:5:62:1323:303#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:6:74:656:1327#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:7:47:1713:1453#0 1 1 76 95988 96063 [CAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCG] HWI-EAS406:6:57:630:1897#0 1 1 76 95992 96067 [AGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGA] HWI-EAS406:5:56:425:941#0 1 1 76 95993 96068 [GAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAA] HWI-EAS406:6:48:1251:976#0 1 1 76 95994 96069 [GATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAA] HWI-EAS406:7:21:585:1306#0 1 1 76 95998 96073 [ACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGA] HWI-EAS406:5:50:1455:1115#0 1 1 76 96001 96076 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:6:53:1165:1068#0 1 1 76 96003 96078 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:7:1:1156:1978#0 1 1 76 96003 96078 [CTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCA] HWI-EAS406:6:56:1607:1792#0 1 1 76 96006 96081 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:9:654:271#0 1 1 76 96007 96082 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:57:146:739#0 1 1 76 96007 96082 [GACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAAT] HWI-EAS406:5:85:313:1610#0 1 1 76 96009 96084 [AAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATC] HWI-EAS406:6:21:399:708#0 1 1 76 96013 96088 [GGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAA] HWI-EAS406:6:50:324:503#0 1 1 76 96015 96090 [GAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACT] HWI-EAS406:5:48:349:1571#0 1 1 76 96022 96097 [ATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCC] HWI-EAS406:7:41:1353:676#0 1 1 76 96036 96111 [ATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCCTAGACA] HWI-EAS406:6:93:442:832#0 1 1 76 96042 96117 [ACTATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTC] HWI-EAS406:6:53:189:1605#0 1 1 76 96095 96170 [ATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAA] HWI-EAS406:5:25:842:1349#0 1 1 76 96098 96173 [CCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCA] HWI-EAS406:7:49:569:1689#0 1 1 76 96103 96178 [ATTTCATCGAACACCTTTCGGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATG] HWI-EAS406:6:48:573:424#0 1 1 76 96302 96377 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96546-96743] There are [41] sequences in this contig [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:5:59:464:1284#0 1 1 76 96549 96624 [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:6:30:208:1363#0 1 1 76 96549 96624 [CAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAA] HWI-EAS406:5:39:1300:1111#0 1 1 76 96571 96646 [TGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAA] HWI-EAS406:7:52:386:1253#0 1 1 76 96578 96653 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:35:1367:1803#0 1 1 76 96580 96655 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:39:947:220#0 1 1 76 96580 96655 [ACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAAT] HWI-EAS406:7:26:1194:1131#0 1 1 76 96583 96658 [CTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATC] HWI-EAS406:7:7:1501:844#0 1 1 76 96584 96659 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:5:54:130:722#0 1 1 76 96590 96665 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:7:26:1334:829#0 1 1 76 96590 96665 [ATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATA] HWI-EAS406:5:39:225:226#0 1 1 76 96591 96666 [TCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAA] HWI-EAS406:5:25:1166:904#0 1 1 76 96592 96667 [CTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAAC] HWI-EAS406:5:72:728:1108#0 1 1 76 96593 96668 [ATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAA] HWI-EAS406:7:97:1596:710#0 1 1 76 96597 96672 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:6:77:1297:372#0 1 1 76 96603 96678 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:7:60:325:1845#0 1 1 76 96603 96678 [CTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATA] HWI-EAS406:6:46:1493:1364#0 1 1 76 96604 96679 [CTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAAC] HWI-EAS406:6:97:1626:350#0 1 1 76 96606 96681 [TTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACA] HWI-EAS406:6:89:439:326#0 1 1 76 96607 96682 [CCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAA] HWI-EAS406:5:52:846:1834#0 1 1 76 96612 96687 [CATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAA] HWI-EAS406:7:27:1352:654#0 1 1 76 96614 96689 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:5:12:18:1692#0 1 1 76 96615 96690 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:6:79:1502:1763#0 1 1 76 96615 96690 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:6:20:1277:1200#0 1 1 76 96618 96693 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:7:20:482:1782#0 1 1 76 96618 96693 [GATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGA] HWI-EAS406:5:88:761:589#0 1 1 76 96621 96696 [TTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGAT] HWI-EAS406:7:71:96:562#0 1 1 76 96624 96699 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:5:84:1251:1593#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:6:39:612:1266#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:7:29:339:747#0 1 1 76 96626 96701 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:5:35:237:1240#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:6:136:1637#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:19:1295:156#0 1 1 76 96628 96703 [ATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACT] HWI-EAS406:7:32:520:1318#0 1 1 76 96629 96704 [TAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTC] HWI-EAS406:7:88:48:1089#0 1 1 76 96631 96706 [ATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTG] HWI-EAS406:6:38:866:435#0 1 1 76 96646 96721 [AGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTT] HWI-EAS406:6:21:273:2005#0 1 1 76 96653 96728 [AAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCT] HWI-EAS406:6:65:1490:908#0 1 1 76 96655 96730 [TCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAA] HWI-EAS406:7:83:681:1286#0 1 1 76 96658 96733 [ATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATC] HWI-EAS406:5:17:710:1002#0 1 1 76 96664 96739 [CACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCCAAA] HWI-EAS406:6:63:971:1449#0 1 1 76 96668 96743 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96752-97468] There are [78] sequences in this contig [CCAAGTGCAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGG] HWI-EAS406:7:98:1610:812#0 1 1 76 96801 96876 [CAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACT] HWI-EAS406:7:24:560:1540#0 1 1 76 96808 96883 [AAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTT] HWI-EAS406:6:22:463:1392#0 1 1 76 96809 96884 [TAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTC] HWI-EAS406:6:25:466:1248#0 1 1 76 96822 96897 [AAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCC] HWI-EAS406:7:90:205:1555#0 1 1 76 96823 96898 [GCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAA] HWI-EAS406:6:27:1215:637#0 1 1 76 96828 96903 [AAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTC] HWI-EAS406:5:69:143:474#0 1 1 76 96831 96906 [CTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGG] HWI-EAS406:7:2:646:1440#0 1 1 76 96839 96914 [AAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAG] HWI-EAS406:6:69:1608:993#0 1 1 76 96865 96940 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:6:1:1134:1601#0 1 1 76 96867 96942 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:7:27:1186:269#0 1 1 76 96867 96942 [GACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACT] HWI-EAS406:6:47:1520:1770#0 1 1 76 96880 96955 [GCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGT] HWI-EAS406:7:2:1474:1109#0 1 1 76 96885 96960 [GGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACG] HWI-EAS406:6:5:1509:1517#0 1 1 76 96899 96974 [GGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGG] HWI-EAS406:7:33:201:1509#0 1 1 76 96900 96975 [TCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTG] HWI-EAS406:6:63:690:1073#0 1 1 76 96909 96984 [TTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGA] HWI-EAS406:6:63:980:824#0 1 1 76 96921 96996 [GGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTT] HWI-EAS406:6:74:319:1980#0 1 1 76 96925 97000 [GCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCT] HWI-EAS406:7:15:1248:709#0 1 1 76 96936 97011 [GAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCC] HWI-EAS406:5:27:1278:665#0 1 1 76 96938 97013 [GGCTTCGCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG] HWI-EAS406:5:16:1197:1307#0 1 1 76 97015 97090 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:12:498:898#0 1 1 76 97055 97130 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:15:449:1383#0 1 1 76 97055 97130 [TCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGT] HWI-EAS406:7:12:886:602#0 1 1 76 97057 97132 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:5:72:551:2005#0 1 1 76 97059 97134 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:7:54:1622:833#0 1 1 76 97059 97134 [TGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCC] HWI-EAS406:6:15:617:645#0 1 1 76 97063 97138 [TCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGG] HWI-EAS406:6:71:1065:1848#0 1 1 76 97065 97140 [CTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCT] HWI-EAS406:5:21:1187:208#0 1 1 76 97068 97143 [GGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTC] HWI-EAS406:6:74:1088:195#0 1 1 76 97073 97148 [GTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGC] HWI-EAS406:5:79:1567:1339#0 1 1 76 97077 97152 [GCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTC] HWI-EAS406:6:63:1541:1622#0 1 1 76 97080 97155 [CTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCT] HWI-EAS406:5:62:1176:406#0 1 1 76 97081 97156 [GAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA] HWI-EAS406:7:29:1109:1686#0 1 1 76 97085 97160 [GAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGT] HWI-EAS406:6:76:1137:734#0 1 1 76 97087 97162 [GGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGA] HWI-EAS406:5:17:466:948#0 1 1 76 97089 97164 [GGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGAT] HWI-EAS406:5:48:1356:1247#0 1 1 76 97090 97165 [GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATG] HWI-EAS406:5:76:713:1442#0 1 1 76 97091 97166 [TGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAAC] HWI-EAS406:7:9:1331:1496#0 1 1 76 97095 97170 [AGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCG] HWI-EAS406:6:40:1350:738#0 1 1 76 97097 97172 [ATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCG] HWI-EAS406:6:49:1132:1723#0 1 1 76 97099 97174 [GCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAG] HWI-EAS406:6:25:1330:1345#0 1 1 76 97101 97176 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:8:1401:420#0 1 1 76 97106 97181 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:9:1271:618#0 1 1 76 97106 97181 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:3:1199:1835#0 1 1 76 97111 97186 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:52:610:424#0 1 1 76 97111 97186 [TGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTG] HWI-EAS406:7:4:1026:1717#0 1 1 76 97114 97189 [TGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCG] HWI-EAS406:7:28:1674:1087#0 1 1 76 97117 97192 [TCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCT] HWI-EAS406:5:15:1212:1925#0 1 1 76 97119 97194 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:5:2:608:141#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:523:1013#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:524:1015#0 1 1 76 97120 97195 [GCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCT] HWI-EAS406:6:2:776:1475#0 1 1 76 97121 97196 [CGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTA] HWI-EAS406:6:90:484:209#0 1 1 76 97125 97200 [GAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGG] HWI-EAS406:7:68:506:1429#0 1 1 76 97128 97203 [CGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCT] HWI-EAS406:5:64:801:1492#0 1 1 76 97133 97208 [GCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTC] HWI-EAS406:7:30:1512:839#0 1 1 76 97134 97209 [CGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAAT] HWI-EAS406:6:82:42:1860#0 1 1 76 97138 97213 [TCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGA] HWI-EAS406:5:21:576:1666#0 1 1 76 97143 97218 [CGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAA] HWI-EAS406:7:67:976:1926#0 1 1 76 97144 97219 [GTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAG] HWI-EAS406:7:72:284:1217#0 1 1 76 97145 97220 [CTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCA] HWI-EAS406:6:90:1324:603#0 1 1 76 97148 97223 [CGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGA] HWI-EAS406:7:55:648:1548#0 1 1 76 97150 97225 [TGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGT] HWI-EAS406:5:68:541:1504#0 1 1 76 97165 97240 [AAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCG] HWI-EAS406:5:33:1462:1304#0 1 1 76 97167 97242 [AACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGC] HWI-EAS406:6:39:296:1568#0 1 1 76 97168 97243 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:4:379:1940#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:23:160:476#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:7:95:818:1496#0 1 1 76 97172 97247 [CGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGG] HWI-EAS406:5:71:1012:1264#0 1 1 76 97173 97248 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:5:47:1098:608#0 1 1 76 97179 97254 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:7:9:1400:1506#0 1 1 76 97179 97254 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:22:853:1626#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:59:731:114#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:7:99:1783:1300#0 1 1 76 97180 97255 [TCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCAC] HWI-EAS406:7:17:1109:924#0 1 1 76 97182 97257 [CCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCC] HWI-EAS406:7:35:510:222#0 1 1 76 97185 97260 [CCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCCA] HWI-EAS406:6:51:1260:1409#0 1 1 76 97186 97261 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/97747-97908] There are [2] sequences in this contig [TGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAGTCCCTAAAACCTGCAAGAAAGTCAGCTACACC] HWI-EAS406:5:85:282:494#0 1 1 76 97747 97822 [ACTACGGCGCCGGGATGTGAGCATTGACGAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGC] HWI-EAS406:6:84:640:795#0 1 1 76 97833 97908 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/98348-98423] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/99899-99974] There are [0] sequences in this contig -------------- next part -------------- A non-text attachment was scrubbed... Name: assembly_test.pl Type: application/x-perl Size: 762 bytes Desc: not available URL: -------------- next part -------------- >AC189398-KBrB056G23 ACTCTCGTGATGATCCACGTTGAAAACAGAGGATGATACTTCGAGAATCTTAGGCACATAGGGATGAGGG TTATGAGTATTGTTATTGCTTTCTCCTCCTCCTTCGTAGTTCCGGCGGCTGAAGAGGCCGTAGGAGACGG CGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGA AAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAAT TTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAGTTGTTTTCTTCGAGCTTCTTGTTGTTTCCACCA TTAGAGAGAAAGTAAGTTGTACTTTAGGTTGGTGATGAAAGATGGTTTGAAAATACGATTAAAAGACCAA AGTTAGTGGAAGTGCTAAGACTTCAAGGTTAAGTTCTGTTTTTTTTTTCTTGGTGTTTAGAAAAAAATAT GAGAAGAAGAAAGAGATTGAAGAGAACAAGATCTGATGTCCAAGTTGATGTGTGAATTCATTCCCAACTT TACTTTTTTGGGTTTCTGATACTATTCTAACGTTATTTTTGATGGTTGACAGCGACTGGAGAATCGCTCT GTGGAACGGAACATCCAAATGTTGATTACATTGAAGGTTTGCAGTTTGTTTTTTTTTTCAAATATGACTT AAAACAAAAAGTGAACCACAAAACTAGCTCATGATTCTTTTTGGAATTTTCATTTGGCATATTCATTTCA AAAGTTTGGATTATTCACGAAAATACTATTATTTTTTCTTCCGAAAATGAGTATTTTACTCTATTATATC ATTTTCATCATGTATTTACAATATTACCATTGCAATCAGTACCAATCCACCATGAACAACCAATTTGAAG CTTTTAATGCACCAAAGTTTCGATTTTTACCCTTCATATCTCATTACTTATGCATACAAATTACATCTCT TTCATTTTTTCTCTATATTCATCAAAAAAACCAAGATTTTGATTCTAAACTTTGTAAAGTTCAAACTCAT AATTCTTGGTCATTAACAAGTGGGTTTGTTTCATGGTGAAATAATATGTGATAGAAGAAGCTAATTAAGT TATCTCGTTGGTTGAAAGTATGAAACTAATTTTTTTCCAGATTTGTTCGTCGGAAGACTTCCGTCTAAGT TTTCTCGTCGTAGAAGACTTATACGGAAATCTTATCTTCAATACATAGGTTAATTTTGCAATTGACTTTA AGTGTGTTTTTAGAGACGGCTTCTTTGGAAGTTAACACCAAAATCTCGAAAATACCAGAGAAGACTTTCT AGAAAGTCGTCTAGGATACACAAGTTAGTTTTGCAATTGACCGGATTATGACAGAATTTTGATGTTCTCT AGATAACTTACACGGAAGTCTTCCCTGTAAGTCTTCCGAACTCTCAGTAGAAGTCTCTTCACTGTCGATG AAAGTCGTCTCAGGTTATTTTTGCAATTGAAAAATAAAACTTAAATATTTAATTTTAATTAGACAAATTC CATGTAAGTCTTTCGGACTTTCGGTGGAAGTCTTCTCACTGTCGGTGAAAGTCATCTCGGTTTATTTTGT AATTGAAAAGTAAAACATTAAATATTTAATTTTAATTAGACAAATTCCATGTAAGTCTTCCGGGAGACGA CTTACACGAAAGTCTTCCAGAAATTTATTCCAAGATTCTGGTCAAACCTTGGTTATCACAGAAGAAATTC TGGTAAATCTTATGCCGGAAGACTTACATCGAAGTCGTCTAATTAAAATTAAATATTTAAGTTTTATTTG TCAATTGCAAAAGACATGAGACGACTTACATAGAAGTCGTCTTGATAAATGTAATCTTTAAGTTTAGTTT TTCTAGTGGAAGACTTCCATGTAAGTCTTCTAGAAAAAAATCAAATTTCTCACATAGTTCGGTCAATTGC AAAACTAACATGTTTATCCTAGAAGACTTATCGGTAAGTCTTCTCTGATATTTTTGAGATTTTTTCAAAA ACAAAAGTAAGCTGATATTTACAAAGGAAGACTTCCAAAGAAGTCTGCTGTAGAGTAGACTTCTATGGAA GTCTTCCTTTGTAAATTTTCAATTTCAAAAATGACCTAAATGGAAGACTTCCTAGAAGTCTTCCGGCAGA CGACTTCTGTGGAAGTCTTCTACGTCAATGTTTCATAAACTTTCATTTTCTCAAAAATTATAAATGCTTT TTAAAATTTTCTTGTTGATTCATGTATATTAATCGATATTAGGGTTGCTGAATAAAATACATAAATTAAT TGATTTTAATTATGAGGTTAGCAACATTCATGTTTATGAATGTTTTTAGCTAGTTCGAGAAGACTCTCAC ATTTTTTTTGTAAACTTATTAAGTAACTTTAAGATATTTTTTTAACTTTCAAAAGTGTCAAGTAACTTCA ATATTATCAAGTTTAATGGTTTAATATATCTTCTTAGATCATAAAATATACTTTTTAATTTTCATGAGAT TTAAAGTTTTAATTTTCACTTAAAATTTCCGCCTAAATTTTAATTTCCCTCTTAAATTTCCTGTTTACAT TTTATTTTTCCGCTTGAAATTTAAGTCTTCTGAGAAGATAAGCTTGAAAACAAAATTTATATGTTTTAGA AGATTCTTTCAGAAGGCTTCCATATTTTCAAATTTTCCCCCATCAAAATAATTTTAATAAAATTTATAAA TTATTTCTAAGATCTAGAGTATGAGAAGACTTCCTAGAAATCTTCTCCGAGAAGACTTATAAAGCCTCCA GAAAACTTCCAGGGGTTATATTCGTAAAAGAACATTCTGTCTATTTTTGTCATAAGGGATACTTGTAATT TCACTAGTTTTTTATGTTACTTTTGCATTTGATTCAAGTTGGGGGTACTCGAAACCTGAAACTTCTAGTA TATATTAAGTATATATGGGTGTTTCATTTTATTTTTGGTATTCTGGGTATTGTTTAAGTTTCAAATTTTA GTTTTTGGGTATGATTTTGGGTTTCAGATAAAAATTTAGATTTTCAAAAATATAATTCGGATAATCAGAT AAAACTTCAGATATTTTTCATGTCCTTGGATCAAATTTTAGAAAACATTTCTCATATTTACTCATATTTA AATATTTTCAGGTATTTTCTGTGTGTATTAGGTTTTTTTTGTTGGACCCGACATGACCCGAACCGAATCC GATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCG ACCCGGATCCGAGAAGACCCGAACCGAGAATTTCAAATTACCCTATCGGGTCTTAAACTCTTAGACCCGA AGGATCCGGACCCACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGA GTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCAACTAGTCGACCTTATTA GTAAGAACATATCTAACCCATCTTTACATTTTTTTTATATTTTCTTCTAAAATAAATAAATTATATTATA GAAGTGGATTTACTTTATTATATGTTTTTATATATAATCTTTGTATTTTAGACAGAAATATAGAAACGAT TTGAAAATGGTCTAAATCTTTTTACCAGAAAAACTTTCCTAACATCTGTGAAGATGAAAATATTAAAATA TTACTTTAGTTAGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAAT TTGGTCTGGACAATTTGGTCTGATACAATTTGGGCTTAAAAAAATAATGTCCATTTGGACTGTTGTGTCC ATTTGGACAACCCATTTGGATTTGGGCAGTTCAATTGACGTCTCTAGCTGTGGACTCACTGGTCGGCTAC ATTTATTATCTCTCAAGCTTTTTCCTTTTACTCTATACTTCAAATTCGAGGAAACATTTCTGCAACTAAT AGAGATGACGTATAGATGAAACCAAGTTTAAGTTAATGTCTGATTTAAAACCATTAGCTTAAACTCATAG CAAAAGATAAAAGAGAAAAAAAAGAAGAAGAGAATTTGCTTAAATCATACGCACAATGTATATAACCATT GCTTTTAACTTGCATGATTGCATCCGAATTTAATTTTATTACAGCCAATGAATGCACAAATAGAACGAGT GATATTCAAATGTTTATTTTTACTTGGTTTCTGTGTCATACACATTATTATAATCCTAAACCATCCCGGT TCTTAACATCCAATACAATGGTTATCTCCCCCCGGTTATTGAAACTAAAAGAGCTTCACTTGCCAGTGTA ACGAGGCTTACGTTTCTCAGCAAACGCAGCTAATCCTTCCAGACGATCTTCAGTGTTTAGAAGCTTCTGA TAACACATATCCTCTAGCTCTAATCCTGAAGCCATATTCGTCTCTATTCCTTCATCAATCGCTTTCTTCG CCATCTTTATCGCCATTGGACCTTTCTCATTTATCTGCTGAGCCACTTCCATTGCTTTCTTATGAGCCTC ACCCGCCGCAACACAAAAGTTAACTAGCCCTACACGACAACAACAACAACAAAAAAGAGAGTATTAATAT AGGAAGACTTGAATTTGAAGACCTTTCCCTTGATGAACCAGAACTAGAGGCTGTTGTGTTTGATGGAGAA GATGAAGATGAGTAAAACAATTGATCTTTGACATTGAACGTTTTTATTTTTAGTTGTGTTGCTTGATATT TAATACTTTGCTGGATTTGTGTGGTTTAAAGTTTACACTTTTAATTTTCAGAATTTTATTTTATATGTGG GTTTATATGATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATA TACGCTTCCAATACGGATCCGCTTCCTAGTTTTTTGAAAAAAATCGTTTCTACGCTTCCATACGATTCCG CTTCCGCGTTTCCGCTTCCGTTTCCATGTAACGTAGGTATTAAGAATCATCCTCTATTTGGTGGGTGTAT ATGTCATAAAAAAACAAGTTCACAATTCAACTTTAATAGTCACAGACCTTTCTTTGCAGCTTCTCTTGCA TCAATCTTTCGACCAGTGAATATAAGTTCCTTTGAAACTGATCTTCCAACCAGCCTTGAGAGTCTCTGTG TCCCACCAGCACTGAATAGAAGCCGAGAGAAAGAAGAAATCATCAGAAGATTGATAAAATGGGGAGTCAT GGATGGAGCTTATAGTATATATATACCCAGGGATTACAGCGAGTCCTGTTTCAGGCAAACCAAATACTGC ATTTTCGCCTGAAATATCGAGCAAGAACTGGAGATTATAGCAGAAAGACTCTAAATAAGAAAAATGATGA CATGTGAAAATAGAATACCGCAGATTCGAAGATCACAGGATAAAGCCATTTCGAGTCCACCTCCTAGTGC CACACCTTCTATTGCAGCAATAGTTGGGATACTCAATGCCTAGAATACACAAGTCACTATTTATACATTC CTCTTCTCTTTTATATAAGTTCGAAGACTAATAAATTTTCCATATCTTGATAAAGTAAAAGTAAGTTTAC AAATGTAGTCGATTTGAAAAAGAGTTTGTTGAATAGGGATTAATACCTCTATGAAGGAGAACATGTAGCG CAAAGAGTTGACATATGTATGAACCTCAGATGGACTCATAGTTCTACGTTCCTGACATGGCAATAAATAA GTAAGAAATAAAACATACAAATTGTTTCAAGCATGGGTGACGAACCCTATTGAATACGAACATTCCAGAA AAACTACCTTGAGATCTGCACCTGCACAGAAAACTCCAGGAACCAGACTTGTGATCATCACAACTCTAGC GGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTT TTGGCCACAGGCCTGTCTAGATTGACCTCGACAATCCCTGTAAATCAATCACAAACTCACATTAAGCACT GCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTA ATCCGACAGTAACAATGCTCAGACATCCAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTC AGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGAAGCAAATAACAC ATCCAACAACGGTATTAACTAACCCTAACAATAGAACCCAAAAATTACCAGAATCGGAACCAGAGAGACG GTTAAGCTTGACAGATTCAGGCAGAGCGGTTTCAATAATGAGAGTCCGGCAGGTTTGAAGCATGAAACTT CGGCTAAGAGATTGTTTTCCGGCTAACTGGAGCAAACTATCACGGCGGAGATACTTAACGAAGCTCATCT TCACCGTCTCTGACTCCAAAGTTTTGATTTTTAGTCCTGTTAGGTTGAAAATGACAGGCTTTACATTCCG GTTGTGTCAGTCCGTAGTGGTCAATGCTTATCCAACCAAGTTCTTTCTTTTTGGTTTGGGTTTCCGGTTC GGTTTTTTAAACTAAATTGAATCCGGTCTGATCCGGTTTGTGTTATTTACCGAGTTTTTCTTCTTACTAT GGAAGGAAGAATACAACAAGAAAAAAAAGAAAAGAGAGTGTTAATAGTACATTGTTTGTTGGTGAAGCCT CCTCCTCCTCCTCCTCAAAAGACTCAGACTTTATGCACCCACGCATCAAGTCGAAGCTGTTTCAATGGCG GTCCTGATTTCCCTTTCTTTCTCTGAGGGCAACTCCATTTTCCTGCAATCTCCTCTCCCCCAGAAAGCTG ATGATTCCACATTTCACCCAAAATTCTTCTCTTCTTCTTCTTCTTCTTTCTTTCTTCATCTTCTTCTGTG GCCATCTTCTTTAGCTTTTTACTTCTCGAGCACTCCCCCAGAACTCCTCTGATTGGTTTCTTCATGGAAC TTTGGTCTCTTGATTCTCTAAATCTTGCCTTCTTCATAGTTACAAATCCAGTTTCAGCGTCAACATTTTC CTTGTCATCTGATTCTTGGTTTACTGACTCCATATTTTCTTCTGGACGAGCCTTTTGAGCAGCTTTTCTT GGAGACATTTGCCTGTTGGAAATGGTTTCTTGGATATGTTTTGGTCTCAGCTCCTGTAATGATTGTGGTT TTGGGTTGTAGCCTTTGGGGATAAAGTTTGCTTCTTCTTTCGTTTCACTGAACAATGGTTCTTGCTTGAA GCTTGAATCTTTGTCCTCTTTTTTGGTTGAAGCATTGAACAATATAACCGTTGACTTCTTTTCCCTTTCT TGGTTTGAATATGCAGAGACCTCCTTGGCCTCCTAACATGTACAAAATTGAGAAAGTGTCAATGGATTTT CAAAGTGATCCCACACAAGTCTCTTTCTTTGAACTACAAGGTTCAAGAAGATAGCCTACCGTGCAGTCAT TTGATTTTAACCAGCCAGGAGCAATAATAGTCTCTTGCTTGCTCTTAGTTTTTCGGAAAATACCAGAACT ATTTTCTCCCTCAGTGTCACTCTCCTCAATGATTAGTTGATCATATTTCTCAGAAGAACAAACTTCAATT TCATGAGTGTCTGAAAGCTGAGGAGATTCATACACATAGCTTGAAAACCAGTTCCCAACATCAGGAGGCT CTGATAAAAGAAATAAGATTGCTAAGAAAACAGAAACAGTAATGACTTATGTACCAAATAAACTAGTTTT TTACCAACCTGAAAGAAGATGCTGAGACTGAGAGAAATCTGCAACCTAACTAGTAGCAAGAAGCATCAGA GAGCTAAGAGAGAAACATAGATTCATATAAGATAATCTAACACTAAGGCATAGGAAGTAGAAAATTATGT ACCTTTGCAGAAGAAGAGACAAGTTGTTGCTCAAACAAACTAGGACAAACATCATCTTTTCCTTCAATGT CTTTAGTCTCTTCTTCTGCTTGCGTCTCCTTTACACATTCACTATCTTCTCCACCAACCGAAAAGCAAAG AGCATCATTTGTATCCAGGACGGGCGGTGATTCATAAGCATAGCTAGAAAACCAATTGCCTATATCAGGA GGTTCTGAGAAGCACACACATAAAAAGTTACAAACATAACCCATCAAAAAAAAAAAAAAAGCTAGAGACT TTCCACGTTCATCCATAAGTTTAACAATCAAAAGGAGTATATACCAGAAAGGAGTGGTGACTCATAGAGA TTATTTGTCTCTTGAATCTGCCACAAAAGTTAAAAACAAAAAAAAAAATTGAATTTTAAAAACAAATCAA AGAAGAGTGAATCGATTGTAACCTGACTCACATTCTTGTTCATAGGTTTATGATCTTTGTCCGCACCAAG AATGTATTTATCTTCCTCTCTAACAGAAAACCCGTTCGGTTCTCTTTCACCGTCGTCCTTGCCTGAAGAA CTCAGTGCAAGAGATTCATAGACGTAACTTGAAAACCAATTCGTAATATCTGGCGGCTCTGTAAATTAAA AAAAAATAAAAAATAAAAAATGTCAACAACAAGACTTGAAAATTGCAATTAGAAGAATTCGCAGCATTCA ATTCAAATAACTCACGGGATATGGTAAATGGAGAATCGGAGTATCCAATAGGTTCCTGCCACACTCAAAC AAAGCTCGATTTCTCCGCTAATTCCCCAGAAATTCAGGAACAAAAATTAGAAAAAAATAAGGATAGAAAT GAATTTCTCACCGCCGCTGAGTGAACTTCTTCCATTAGATTACGACGTCTCTTGCTCTCTTTGCTTTTCT TCCTCACTCAGGATTCTGAGATGTTTATTTTACTTTTTTCCAATTTTTATGATTTCCCGCGCTTCTTTCC TGAGAAGCGGAAAACCAAAATTATGATACTGGGCCTTTTAATATCAATGGGCTCTTTGCTCGCAAACCAA AATTGATCAACACACCTTTCCCAATATCTATATTTGATTTTTTTTTGGTACACGATGAATATAAATTATC TGGAAGCACATAACAGCAGATGTGTTGGTGCTCCGATAAAACCGGTGTGAGCGTTCGAATACACATTTAA ACTAGATTAAACTTGCACGGGATAAATATTATATATTATTTTTATATTATATATTTATAGTATATTATGA AATAATAAATATATATTGAATAATTAAAAAGTCATTATCTACTACTTATATAATTAAATTCGTGCGAACA TATAAATAATTTTGATAAAATCGAGAAAATATTTTTTCTATTTGATATGATATATAATTAAATTTAAATG ATAGTAACATATAGAGAAAAAGACTAGGATAGCACTAAACCAACTTTTTGTTCCCAAAGTAGCACTCAAG GCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATATACACTTATACCCCTTGGGTTAATTAATC CAAACCTTATGGTTTAGAGTTAAGGGGTGGTGTTTTGGAATTAGGGTTTAAAATTTTATAAAAAATAAAT ATTAAAATAAAAAATAAAAATTTTAAAAACTGTTTTAAAAAGTATTTTTAAATTATAAAAAAAAAAATTG AAAAAAAAAATAAAAAAAAATTCGAAAAAATAAAATTTCGAATCTGAAAACATATAATCTGAAACTATAA AAAAATTCTTTTTTTAATTTTTTTAATTTTTTTTAATTTTTTTGTTTATTTATTTAATTTTAAATCAAGG GTATTAGGGATATTTTACCCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAG ACATAAACTTCAAAAGGTGCTATTATTGACAATTGCCCTAACATATATATGATATATTTTAATATTAATA TTTATTAGATGATTTTTTTGCTCATATTTTTTTTTTATCATTTGTATCTGTTATAGCAAAAAGTCTAAAT TAGTGATAACAAAATTTTCACGGTGGGATTAATTGTTTAAGAAATTTATAATATTTTAAAAAATTAAGTT GTCAATATTTGTTCAAATTTTTTATCAAAAAAATGTTCAAAGTAAATTTAAAATTAAGATATTTATGTAT TTTTATATGGCATATAGTTTAATTTAAAATGATACATATATTTAAATATCTTTTATTTTTGATACTTATT AAATGAGACATTCAACTTCTATTATTTTTAATTATTTGTATCATGTCATCACAAAAGTTTTAAATCATAG TTCACAAAATTTAAATGTGAAACTTTTAACACTTTTAGTAATTTATACTCGTTTTTAAAATTTCAAAATA TAATATATAAATAATTTTTTTTAATTTTTATTATATGGTTACTATGATGAGAAAAAGACTAGGATAGCAC CAAACCAAGTTTTTGTTCCCAAATTAGCACTCAAGGCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGA TAAATATACACTTATACCCTTGGGTTAATTAATCTAAACCTTAGGGTTTAGAGTTAAGGGGTGAGGTTTT GGAATTAGGGTTTAAAATTTTATAAAAAATAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTC AAAAAGTATTTTTAAATTATAAAAAAAAAATATGAAAAAAAAAATTTGAAAAATAAATTTTAAAAAAAAA ATTTCAAAAAAACAATTATAAAAATTTTTAATCTGAAAACATATAATCTGAAACTAAGAAAAAATTTCTT TTTTTTATTTTTATTTTATTTATTTTTGTTTATTTATTTAATTTTAAACAAAGGGTATTAGAGATATTTT ACCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAATG TGCTATTATTGACAATTGCCCTACTATGATTGTTTAATTGATTTTAATAGCTTAAAATTAAAAAAAAAAT ATAATAATAATACGCTCATATTTTTATCAAATATTTATTCTTCAAAATCATTAATTGTCATATATACTTT AGCCACAATAGGTAATTCCGTAATCTTATTTAAAGAAATAATGAAGCACATTAATAATGTATTTATTATG GTTTAATAAAAAGCTTATTATATATTTAGATGAACTAACATATTTCTCTAAGGATTCTAAGAATCATTCT AGTGATGACACGTGACTACAAAAAAGTGTTGCAATGCTTCTCAAATAATATATAGGGGATATACATTCAC GTTCGGTTTGAGTATTTCAGATTTTCAGGTATTTTGTGTCGAGTTCGGTTCGGTTGGATTTAACTTTTTG TATTTTTAAAACAAATTTATGAATAAAAAAATATGAATCAAATAGTAAATATATGTTGTAAGATAGAACA ATAGATATTTAAGCAAACAATAATAAAATAGGTTGTTAACCAAAAAACGACATAGTATATATGACCGAAG CAAACTGACCCATCTAGGGTCCAACAAAAAAATCTGAATCCGAAAAAACCGAACCGATCCAAAAAAAATA ATACTGAATCTGAACATAAATATTTTGGATATCTGTATGTATCCAAAAAAGATTTATATACCTAGATGTA TTAATTATTTTTAGATTTTATAAATTAAAAAATCTAAAATTTGAAGGATATTTTGAAATTGTTAAAAATA CCTGAAAATATATACAAATATCCCCTATATATTAATAGAGAAACATTTAAAAATTTATAACTTGCAGTTT GTACTAATCAAAAAAGTATCATGCTGAGTTGTCAAGTAATTGTAATGCTAATTTTGCTTACGTGGCGGCT TGAGAATCAATTGAGAATTTTGTTAGTCCAAAATTAAATTGCTAGAGAATCTTATATTATATAGTATGTC AATTATGGACCATTCATTTATGAAATTGAAATTGTTATATTTTATTTCATTAACTAAAACCGACGGAATT ACCTAATGTGATTAAGATATATATGATAATTAATGATTTTAAATAATAAAGATTTGCTAAAAATCAGTAT ACTTTATATCATTTATGTTTAATTATTTATTATTAAAATAAATTACACTATTACATTAATCATATAATAA AAGTTAGATTTTTTTTTTCTATATGTTGTATTTTGAATTTTTCAAAACGAGTATACATTACTAAAACTGT TATAAGTCTCATATAAACTTTTGTGATCAAGGTTTAAATTTTTATTATATAATAACATACAATGATTATA AAATCATATGAATAACTAATTTTAATAATTTTATTTTAATAGGTAGTTTATGTTAATATATATATATATA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCATATCGTTTA AGTTAAACTATACATCATATGAATATACATACTTATATTTTGATATGTGTTGAACATATATAAAAAGTTA ATATTTTAATTTTGACATCTTCATTGTTTCTTTTAAATGATTTTAAATTATTGAAACCACTAAACATTCC ACAGTAAAAAATCTCATTAGTGTATAATTTTGTTACAAAAATATGCAAATAATCATAAAATCATATGAGT AGAAACCTCATTTAATAAATATCCATATTAAAGTATATTATATCTATGTTAAAATATCATTTAAATTTAA TTATATATCATATACGATAGATATTGATTATTTTTATTTATTTACCTTAAAATGATTGCGAATAAACAAA AGCGGTCGTTTGATTTATATGTGCACGCCAATTTATTACATAATAGTAACTGATTTCTTAGTTATTTAAT ATAATTATTATTTTATTATTTCAAAATATGCAGAAAACCATAAAATAAGTAATAAATATTTATACTGCAC AAGGCGCGGATCTTGATCTAAGTATGTATCTCTTTAATAATTTTAAATCTTAAACATTTTCTAAATCTCA GGCCAAAACCAAAATAATTAAATGAGAATAAACTCAAAAATCAATATTTATATCGAGCAATAACCAAAAA AAAAAAAAAACGACACAAAATATGAAAAATATTGAAGATAGATAGGATTGTCACGTGAATGTAAACTTTT CATAACTATAATTAACTTTTAAGTTGCTAAATCATGATATAAAATCGAAATGACATAGTTTCATTGTAAA ATTTTTAGTCCCAAAAATCCGAATAGACCGGAACCGGCTACAGTTTGGTTTCCCGAACCAATTCAAATTT GAACAATATAATGGTCATTTAATATAAATAAAATAAAAAGAAACAATTAGTTATATCTCTTATTTATCTG GGAAAATCTCCCATATTTTAGTCTTAAATTATTACTGATAAAATTTAGCAGAATCTATTTTTTAACTGTA GTTTGCGATGAGCATGCTCAACTGGCAAAAAAAAAAAAAAATTACCTATCCGAATTATCATTCTTCCTAC TAAACTTAAATTTAATAGATTGGAGTCAGTTGATGACAAAAAAAAATGAAATCAGTTTGCAGACTAATAA AACAGATGAAGGTTGCAGCCGGGTTCTTTTAAGTCAGGAAAATCTTCCTATCACTTGGCTTTGCTGTTAT TGACATCGTCGTCAACATCCATGGCGTTACTGTTAATGTCGATGCCAACGTCCGCACTCATGTTCTTGTT CTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTACA AGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTTTATGGTTTATCACACAA CCAAACACAAATGCTTGTTATTGTGTATAATTACGAGATGAATTTACCAGAAGAGTGGTGAGGAATGAAG CAACTCTTCCTTGTGAAACTTGGAAAAAGCTTCACATGCCCATGGTATATGACCATCCGCCACAACCCTG TAACCAAAAACTCATTAATTTTACAAAATGTTCCATCATTCAGACATGCTACTGGTGGATATTACCAGAT CAATTATTCTTATAGTTGGCATAAATGTCGCATTAAACTTGTAAGAAAAGTAGTTTACCTTTGTTTTCTT ACAAAAGAGTTCCAAAGATGCATGAATCTCTTTTCGTTCTTATTCACATCCACGAAATCATCAAGCATCT GCAGCTTTGTTTTAAGTATTTCATAATCCATTTACCACGTTACATCAATATACCATGTATTAATGAACGC AGAAAGAAATCATGGTAATACCTGGCGATCTTCCAGATCTGCAACGTCATCATCCACTTCATCTTCGCTA TCTCGATCAGACATTACTTGCTCAAGTGACATTGGCTTTATCACACAAACCCATGTAGTTTTTTTTGGTT AGTGACAGTAAAACCGTGACAACAACATGGAGATAGCATTATTAAGTCTGTTAAAGAGCTTATTGAATCA CCTGAACTCTGTGAGAATGATAGAACTGGCGTTTCTGAAGAAGTAGGTTGCTGGAAGAAAAAATTCTCGA GTCAATACGGAAGTAGAGTTCATAATAAGGAAGAACAATTTGGAACAAGATAACAAACCTTCTAGCCTCT GATCGCTCAGCAGATAACTTTCTTGACTTAGCAGCCGAGACCACAGCTTCGCTTGCTAACACAGCTTTGG CATTCGAGTCCAGCGAACATTGAGCTATGGCTGGTGAAGAATTGTTCATCCCAAATTGTGTTGCCACGGG ATATCCTAAACTATGGTTTCCTGTAGAATGCCATTCATTTATGTACATAAGTCATGGTAAATATTTTGAA AAGAATCAGAGGACAAGTACATTAACAGAATAATCAAGACACCCACATGAGAAGAAGAGAGTTTACCATT ACTCAGTAGGGAGGTTCCATTATCAGTGCCATTGGCTAAACTAGGTGAATCCATGGGTAAAAAGGTTACG TTTAGTCGCCTGGCGTTATTTTTACCACCTCTTTGTCTACGCTTACGAGGTTTCGAGCTGCAGAACATTA TTGGTTGGGGTTAGTTAATAGAGATGTTCTGACAAGGAGTTGCTGCTATTATTAATGTATATATATTTAA CTTATTAAGGTAGGCTTGTGAAAGTTACCAAAAAGAGATAAGCTCATATTTCTCTTGATGGTTGACTTCT TCCTGGTACAAAGAAGGAATGAATATCAACTACAATTTCTACCAGCTCCCAAGTTAACCAAGTTTAAAGT AACTGACCTCTGATTCGAATGCATCAAGTCTTACAGAGACATTAACTGTCTGGTAATCATCTTCTGAAAG CTACAATAGGAAAAGATGTTTGTTGTAACTAGAATTTCATAGCAAAACAAGAGAGTTGGAATAAAAAAAA ACAACATACCATGAACTCAAATTCAAACAAGTCATGGAACGAATTCAAATGAAGTTGCAGCCCCTGCGCA GACAAAATAACAATGGACTGTAAGCTCAATCAATCAGATAACCATTTATAGAGAGCGAGAAGATAAAGGA AACACATACCTTGAAGCTAACACATGTCATATAGCAAAATGGACAAGAACAATTCTCCGTCACTGCGTGA AAAAATTCAGGAAATAAAAACAAAAGTAGAGAGAAATAGACATGAGAGAACATAATAAAACACACACACA CACACACCTTCAGTTTTCTGCAATGTGTTATTACAATCCTTATAATTAAAAACTACAATCCCAGCAGATC CGGACCTAAAGAGAAGAAGCCATTCATGAGTTTCCATAATTAGACCCGAGAAAAGGAGGATTAAAGAATC ATTACTTTGTTTTGCCCTTTGCACGAATATTGTAACTCAAGCATCTAGGAAGAAACGATGGCTGCACAAA GAAAGAAACAAAAGTTAAAGAGGATCACAGTCAAGCCATGAAGCAGTATCATCAGCAGAGCTAAAAGAAA ATGATTTACGTTGAAAAGGGAGCGAATGCGAAGAATGTTGTAGAGACGAACAGGTTTACAGTAGATCAAG AGATTCTCATCAGGTGGTGAAACCACCTCCTCCTCTTGTGACGATTTCGCGCAACAATTATGCCTACACA TTCTCTCTCCTCTACTCAATTAGCTGCTAGATCTCTTAATCTTCTGCAATTAGGATTATTAATTGAAATC AAAATTAAACAGATCCGGAGTTGAACCTAAAAAGAAGAAAGTGAAATCAAGAGCTGAATTAGCTAACATG GGAAGCTCTGGAACCTGATCGGAGAGGCTCGATGTGCCGGAGAAGAAGGAGAGAGGATGAGGCGTAGATG CAAGCCACTGAGTCATCGCCACGCCATCTTCTCTTTCTCCTTTTCTACTTTCTTTTCCTTTTTTTATTTA TTTATTTTGCTAATTTTTGTTTCTTTTGTAAGCAATTATATAATTTACATTTAAAAAAAAAAACTGAAAT CTAACGCTTTACAATAATAAAAGTTGAAAACATGATAAACAACAACATTTGAAAGTTGAAATCCAAAGGG CAGTTTCGTTTTGAGAGGTGTTACATTATTAATTGATTGTTATTATTCACCAAAACAACTCCCAGTTCAC ATAAATATATGTTCACAACTAGCCTATTTCTCTGATAAACAACACTTTTAGACAATCATAAAAGATGTTC TTAAATTCTCGTACGTAATTAGTTAACTTTAAACTGAACATCAGAATAACAAATATCATAAATTATGGTA CATAATTAGTTAACTTAAATTGATTAATACTTTCAATTAGACAATCCATATAGAAGATATATATATATAT ATATATATATATACATATAGAAGATATATATATATATATAGAAAAATTAAATCTGAAATTTAAATGAGTG AATTCGAAACATACTGTATTAATAAGATGATAATAATGAAAGAGAAAAAGACTAAAATAGCACTAAACCA AGTTTATGTTCCCAAAGTAGCACTCAAAGCTTAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATAT ACACTTATACCCCTTGGGTTAATTAATCCAAACATTAGGGTTTAGAGTTAAGTGATGGGTTTTTGGAATT AGGGTTTAAAATTTTATAAAAAAAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTCAAAAAGT ATTTTTAAATATAAAAAGAAAATTTGAAAAAAAAAATTAAAAAAAAAAAATTTTGAAAAAAAAAATTATA AAAATTTCGAATCTGAAAACATATAATCTGAAACTATAAAAAAAAATTCTTTTTTTCATTTTTTTATTTT TATTTTATTTATTTTTATTTATTTTTGTTTGTTTATTTAATTTTAAACCAAGGGTATTATGGATATTTTA CCCTTTAATGAATGTTATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAAGG TGCTATTATTGACAATTGCCCATATTGAAAACGATAAAACATTCAAAAGAATGTATATGAAGAAAAACTA AACTCTAATCTAAACCCTAAATTAGAATAAGGAAGTACAAACATATTTAAACGATAAACCAATAGCAAAA ATTTAGTGAATCCAAACTGATTAAAGTACAATAGGAGGGGTCCACAAAAATGATAGGACTAAATTAGCTA ACACTGAGAAGCTGTTGGGCTTTAATAAGATTTGCTGGGCTTTAGCTTTTTATCACCTGTAAATAAAAGA AAAGTTAGTAAAAGACTGAACTATCTCTGCTCAGCCGCCACTGCAAAAAAAAATGCCACCTATTATTATC TTCTCATTCATTACATTTCTCTCACCAACTTAAGTTCCTGTCCTAAATACCATTTGGTCTTTTTTTTCTT TTACTCCTCTAGATCTGTACTGTCCGTTGATTCATCATGGCTTCACATAATTACTAGTTCTGTTCTGTCT GTGTGATAATTTTGGTAAGGAAAGAAAAAACGAGGGCTGTAATCAATTCGATTGATTTGAAGATATGGCA ACTTTGAACCCTTTTGATCTGTTGGGTGACGACGCAGAGGATCCGAGCCAGATCGCCGTCTCCATCTCTG CTGATAAGCCCAAGAAACCTGCACCTGTTTCCGCTAAGTCATCTGCTCCGTCGAGGCAGCTTCCTCAACC TGGTGAGATTCGCTTCACACGATTAGCAAGTTATTAAACTTTCGTCTCTATTTGATTCCATCCGTGGTAT CTGATTGTTGTTTTTTAAATGATGTTGATTAGTGAGGGAGGCTAGGAGTGATGCTCCACGCGGCGGTGGA CGTGGTGGTGGTGGAGACCGAGGATCTAGCCGTGGTCGTGGTGGTTACAACCGTGATTTTAGAGGCGGTG ATGGTAACAGTGGAGGATACAATAAGCCCTCTGAGGAAGGAGGGGTTTCAAAGCCTTTCTTTGAGAAACG TAGTGTATATGGCGGTGCTCCTCGTGGTGGTGGTCGACGTGGTGAAGCTGGTGAAGGTGAACGTCCTCGA AGGACATTCGAGCGTCGTAGTGGAACTGGCCGAGGGTCTGTCCTAACCTCAGTCAGTTTTTGTTGTTGTT GTTGATACATTAGTCTCTTTTAAGGTTAAGCTTTATGTTTTTTGGTGAAGGGGTGACTTCAAAAGGGAAG GAGCTGGTCGTGGAAATTGGGGAACACCAGGAGAAGAAGTTCTTGTTGTGTAAGCATTTCTGATGTTTTA TTATGATAGTAGTGCTTGTGAATTTGGAATAAAAAAAAGAAGCTATTTGTCTCTTATAGGGAGACTGAAG AAGTTGCTGGTGCTGAGATTGAGAAGCCTGCTGGTGATGAGGTTGTTGCTGATGCTAAGAAGGAGAACGC TGCTGAAGTCGAGGAGCAGAAAGAGCCTGAAGATAAGGTAAGCAGAGGAATTAAGAGAGATGTTAAGTTG CTATAATAGGACATGGAACTGAACTTACACTTGTCGCTTTTTTTTTTTTTTTTTTTTTAAATTCTCATTA TTATGGCTTGTGCTTCTGTAGGAGATGACTCTGGATGAGTATGAGAAAATACTCGAGGAAAAGAAAAAGT CTCTTCAGTCTCAGACCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATCAATGCAACAACTCTC AAACAAGAAGAAGTCTAACGATGAAATCTTCATCAAGCTGGTAAGACATATTACCTCCCTGTCTTGTCGA CTAGAAACACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAAC GCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGTAGAA GCCTAATAAGTTTACCTATGGATGTGTTCTATGTTTTGCAGGCTGTGAGCATTAATGAGTTTCTGAAACC AGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGAAGGGGACGTGGTGGTCGT GACCGTGGAGTTGTTTCTGGTGGTGGATTTGATGGTTACCGTAGTGAAGCTGCGCCTGCCATCGGAGATA CTGCTCAGTTCCCATCTCTTGGGGGAAAGTAAGATCCAACCTTGGACACTCCTGCTGTCTCCTTCAGTTT TCCTCATCATGACTGAAGTGTTTCATGCTGAGTGTTTGCTGGTCTGTTGTTGTCAGGTGTAAATTGTTAG TTGTTGTCAGTTTTTAGAGTTTCTGAAAACTTATGCCTGACCGGTCTTTTTTTTTTAACGTTTGGAACAA TAATACCCTTTTCTATTTTGGTTTTACCACTTAGTCTTTATAGTTGTTTGTGAAAAGACAGACAGTTCTA ATGTTATATGCTTTGGGTCTTCTTTGGGTTCACTCTATTTGCTCTTACATATGTTACAAGATCTATAATA CTTTGATCTCTTGGAATGCCATGATCTCTGGTTACGGGAATTTGGAAATGGCATCAGGTTTCTTCCAAAC GGCTCTGGTTAGAGGCGTCCGTGGGTCGGTGATTATCACAAGGTACATGAAAGGAAATAAGGTTAAATTA GCTGAAGTCTTCAAAGACAAATCTGGTAACTTGGAATGCATCAGTTATGTCTGAAATTTTCTCGGCCAGA AGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAG TGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAACAATATAAA ACTTTGTCAGATCAGTATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTC AAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTGACGGAAGTGCTAGTAGCCTTCCGCTGC TCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAGAGTTGAAAACAC TTTTCTTTCTTTAAAAGAAAAAAAGAAGAAGAAGAAGATAGATAGTGTGGCCTATGATATGGATCTTTGT TACGGTTTTACTGGACTGTAACCATGCTGGACTAGTGTTCAAAAACCTGATAAATTAATCTAATAGTGAT TGCCATATAGTAATCAATTGTATCACGATCAGAGAAAGAGAGACGAGAGATCATAGTGAAAGACACCACA TGGTTTCACCATTTCATAGATGGGTGTTGCTCTTGTGTCGGTTACTTGTTATTATTAAAAAAAAAAAAGG AGAAGAGCGTTGACTCTCTACTGGACAAATCTGACGTGACGAGACGAGAGTATTTAAATGCGTTCATGTG CGTTAAAAAGTTTCGACACTTTTGACTTGACAAGTTGCGTTTAAGGAGAGGAAGATGCGTAGATCCGCGA GTGGCTCAAGAGTTTCAGATCAATTTTCCCAGGCGAAGCCGTCACACTCACGGTCTATGAGTCGATCTCA GAGTGTTAGACTTGTTGAAGATGCCGAGCTGCATTTGCCAAGGTACGACCCGAGCTCTCAATCGGGTAAG AGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCT GTGTTATAATCCTCTGGCTCTTCTCTCGTTCAGGTAAACCATTCGTGCTTGGTTTAATTGGTTCGATGTG ATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCTTTTAAGGAGTCGA GGTTGAAGAAGCTAAAGGCTGTTACTTGTTTCCTTTGGGAAAGAACCAACTTTTTACTGCCAGGACTGGC GCCACGCAAATGTTTTTTTCCTTTCTTTTTTTGAATTTTGTTTTTTCTTTTCGACAAACCAGCCTTCATT TATATAACATTATTTTGTTATAAATGTGAAATTTCACTATGTAATACTATTTCTACGTCAATACTCAAAT ATTGTAAGACATACAAACTCATTTTCAGCGAATCACTAATCTAAAGTTTGTATGTCTTACAATTTTTTAT TAATTGAGCATTTCATAAAATTGTTATATGGATTCGTGTTTTAATTAAATTAAATTAAATCAAAGAGAAT AAAGTTTTTTATTATCTTATGATTCCCTATGCTATAAGACACACTTTCTGTAGAACACCTCCACTAAAAG GTTTTTAACCAAAGTATCTCAGAAAAATATCTATAGAAAAAATGACTGAGATACAGGTTCTGCATAAAGA ATTTCCAAAATCTTTTTAGAAACCCACAAAACAAATGTTACTTTCTTTTAAATACTTTAAATTTAACTAG TTAATAAAATAAAATTTAAAATAATAGTACTTTGTTATTTAGATACTCATATTGAGTATACTCAAATAAT AGTACTTTATTAGAGATGGGTAAACAAGCCGAACTTGAAAACCCGAACAGAATTCGATCCTATAAAAAAT GAATCCGAACTGATTCGAACCCGACATAAATATCAAATATATCTTGTTTTATGGTATTTCGGATTATGGG TGTTATCCAAACCGAACCCGAATACCCGATAAAACCCGAAACATTCAAAATCCCAAAAAAAAACTTGTAC CAAACATGATTTCAATTCATAATATGTATCTAAGTACACTCAAATATTATTGAACATCTAAAATAATTAT ATATTACATGAAAGTTGATGGCTGAAGGTGATGGTTAAAGTTTGAAGATTTTTTAGACTTTGTTTTTATC ATAACTTGGTTTTCGTTTTATGCTAACCCAACCCGAATCTGAACCGGTTCGAACCAAAATTTTGTATAAT CCGAATGAAACTAATTTTGATATATCCAAAAAATTGAGATTCTATTGGATAAAACCGAAATCTGATTGGG ACCCAGTTATAGGTTGTGCCATTGGGGTTGTTCTTTAATAAAGAAAAATATTATGATTTTTTTTTTGTCA ACCGAAAACTATTATGATTAATATAATACGTTTGGGGTAAAAGAAAAAAATAAATAAATAATATTTCAAT TTGGTGACCAAAAAGGAAATAAATTGGGATCTAAATCAAATCCAGCAAAGAGTTACTACTTACATATAAA GTGGTTAAACTTGAAATCTATCCTTCCAAGAAATCTTCCAGGTTTGTCTGGAATCTTAGATTAGATCGTA ATCAAGTCAACCGTATTGATAAACCTGTGATTTAATCTGACAAGAAAGCACCAATTCCTACTCATATTAG ATTTCAGAGTTCAAACAAATATCGACTCAGTTTTGAAGACAATCATGGCTGAAGTAAAGCGACCTGGTTT CTTCTTCTTCTCACACCAGGGCCTAAACCCATCTCTGAAGTCATCTTTTGCTTCAGTGAAGTCCTCGTGG ATGCGAGTAACATTAACTTCCATTGTTGTCTACGGTCTCCTCTTCCTCTACTCACCAGTTCCCATGTTTA TTTCTATCAGCTCTCTTCGGTTACACACCTACACTGCGTCACCTCATCAGAGTTCTCTGTCTCGGCATTG AGATCGTATACATAATGGCTATAACAGGGCTTGGCCTTGTCGTCTCTGTAGTAGAAGAAAGATACGGTTA AAGAAGGAGCGGCTCTGATGAAAGGGAGGAGGATAACAGGATTGGCTTGAGAGATGTCAATCAAAGTCCC ACATTGGATAATTAGACAAGGAGTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTT TGGGAAGGAAACCAAAAGTAAATCCATGCGGGCTAGCCTCCTAGGCCCAAAGTGGACAATATCGTACTAA TAAGATAAGATAGAGTTGGACACGGGATTTCGCAATCCCAACAATTGGTATCAGAGCGGTTGACGAGAAA TCTGCAAGAAGACCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAG AAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTA AGGGTGTCGAATGTCGAAGATGCGACAAGGCACCGAGATGATTCGCTAGAGGAAAAAGGGCACAAGGTGT GTGGTCCTTAGCTTGAGGGGGAGAATGAGAGATGTCAATCAAAGTCCCACATTGGATAATTAGACAAGGA GTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTTTGGGAAGGAAACCAAAAGTAAA TCCATGCGGGCCAGCCTCTAAGGCCCAAAGTGGACAATATCGTACTAATAAGATAAGATAGAGTTGGACA CGGGATTTCACAATCCCAACATGGCTTTGGCGGGTGTGTTGGTGTTTCTGTCGAGTTTCATTGGTCATGG GATGGAGAAGCTGGCGAAGGAGACTGGTTTGATAACAAGGAGAAAGTGGAAGGTTCAACGATGCTCCTTT GCCATGAAAGTTGCTAGAAGAAACTGATGACGACGGTATCTTCCTACTTCTAAAAGAACCCTGTGCAGAA GCTTCTCCCTCCCCTAATGAAAGATCCAGACCTGGAGCCGTCAATTATGCGTTTTCTTCTGTTCTTTGGC TACAGAGTAAGTGGGAAGATTCTTCAGATGTTCTTACTGTCATCTGCATTAAAAATGAAAAGATCGAAAA AGGAATAAAGGGGTAGCTTTGTAATTTACTGATCAGTTTAAACTTAAGCTTACCCGCATTCGCCTCTTGC TTCTCTCAGTCGCTTCATCACATCTCCATTGTTTTCACTTTCAGCTCCACCTGGTGATGGAGAGAGATTC AAGACTCTTACACCACATCCTTTTATCCTCTCCAGAGACAAGGGACAAGTTTGCGTGTACCGTTCAAGCC AGGCCCAAATCTCACGCAAGAACAGGCATAGTTATGGAGGAAAAACTCAAACTCCACATGGTTGTAGCCT AGTTTAGATGGAGGACTATAGACTTCTCCTAGCGGGAACCCGAAGTGGAACATAACCAGATGATCCATCT TACATGAGTCCACGTCAAGGTAGAAATAATGCACGCCGCTTTTGCCTCCGACGTACCAGCGCACCCCGAT GTTTACAGAACGATCCTTGGGGTCAGTTGGGGGTTCAAGAATGATGCAAGCCTTGAATCCCCAAATCTTT TGAGAAAGAGAGCTCTGAGGTAAAGAGATAACTAGGTTACTTCCACCAGCTCGATGCATGAAATATGTTG GCACTTCTCTACCGGGTGAGATGGCATAGTCGAAATCTGATTGCAGAATGAGTTCCCGCGCATTTTCATC CATATTGAAGCAGTTATAGAATTCAAGACGACTCATTGGATTGACGAAGGGGTGAGATAAAACCCGGAGA GATTCACAATTCTTTGCACAAGCTTACTACCTGGGATTATGAGTTCAACGAGATATTCTGCGCAGAAATC AGAAGGCATATATCTCATAGGACAGTCACTCCAAACAAGTTCAGTGAGCCTAGAAATAATGCCAATGAAG AAACAGTCTTCGTCTTCTACTATGGAAGTTCCACCTAGTAAGAGCCTTGAAATGTTACTTGAAATCCGAG GGAAACTTCTCAACCTTGCGCATCCAGTGAGATTAAGATAGTGGAGAGATGCCAAGTTGACATCTGACGG AAGAAACTCGAGTCTTATACATCCACTCATGCGCAACACCTTGATTTCATTTAGATTACGAATTCATGAG GATGGAAGAAAAACCAAGCTTTTGCAATCGTTGAGTTCCAATCTCTGGAGTTTGGTGGCCTCTGAAAGAT CTGGAATTTCTTTCAGGTTTTCGCATCCTGACAAATCCATATACACTAGATCTTTAAGCAGCTGGAAACA GAAATGAAAGATGCATTAGTTGATGTTGAATGTGAAGAAAAAAAGGGAAATATATGAATGAAGTAGTTTT AGTAATCTCAACCCAAGCCAATCCTAGGTAGAGTCTTTCGTAAATCTTCCCATTTATATTCGCTTAGCCT AAGCCTAACCACCCCATCAAACTTTATTGGGAATTTGTGACACTAGCCAATCAGGAGATGCAATAGCAAC ATGAAAAAAGACCAATAGTTCCTCCTCCTATGCACAAAAACATTAGTAATGAAGATTAAGAGACCGTTAC CTGTTTGCTCAAAAACAAAAACAAAAACAAAAACAAAAAAGAGACCGTTACCTGAATTCCTTCCCACAAC ACCTTTGCCAATTTCGTCGGTCCCATCGTAATCTCTCGCTTCTCTCCCCTTGTAACCTAAGATATTTTAA AAATCTATCAAATAAGAAAAGTTTAGGTTAATGTAACTAATAAAAAGCCATATTTCATATTATCTTCTTC ACTGCAAGTAAATTCAGGAATCAGACAAATGCTAATCAACTCATTCTCAAGCAGAACATACTTAAAACTT CACTTCGATTGATTAAATATTCACTCTTCATATCAAGGGACCAAAAAAGCTAACGCAAAAGCAGGTATAA GACTAACCTAGACTCAAATCACCGATCTCATCAAGTGTTATTTAAATTATTTTGTTATTTAAATTAATTT TGTCATATGAGAAAATTGCTTGATATAAAAATAGATTTATTAATTTAAAATTTATATTATTGTATTTAAG ATAATTATTAATCAGCATTCTATGAACTTTCCCTTTTTTATAAATCATATTATGTATAATGTATAATTTG TTTTTAAATTTAATAATTGTTTCCTATAATAAATGTTTATATATATGTTATTTGAAAAGAATATAAAGAA ATAAGGTTTAATAATGACGATTAGATATAATATTTTGAAGTAATTGTGAGTACCATTATAATTAACCGTC ATAAAAATTAAAATGATATGGAGAAGTACGAAAAACCAGAAAATAAATTAATCCATAATTGAAAAACCGT ATGCCCAAACCTAGATATTCTGATTAGTGATTACAATAAGATATCAAACTTAATTCAAGTGTTGTCCTAT CCTTACTTCACCTAATTTTATAGACTTATAATGAGTTAGGATTTAAGAGAATACATTTGATCAAGCATTC AAGTGTAATAACGGTCGCAATTCATGAATCGACTAAATGTACAAGCTTCGTCGATTAAAATTCAAATCAC TTTTATGCAAATATGAGATGATCGAGAGTATATATGGAACATGTGCGTTGTTGTGATGGTCTAATGTAAG AAGATGGTTAAATAGTAAATGAGGGCCACAGAGTACTGGTGTGAGACAAAGAAAATAGTATGGGGACAAC CATAAATGGCGGTTTGTGAGTGCGAACATAATATTTGGCCGTGGAGTTTATTAAGATGCGTTACCTAATA CAACACGTATGGTCCCTTTTTGTTGTTTGTTTTGTAACCTAGCATTATGGTATTTTATCCTTTTCTACTA GATTTTTGTAATGGCCAGATCCAGATGGCTGATTCATTAATTTTGGAAGACTCAAATGACTTGTGTTTTT TTTTTTTTAACTCAAATGACTCGTTTAGTGACTTTCTAATTAGTTAGTGCTGTTCTTGTGTTTTTCTTTC ATTCGTATGCGGTATGACGTTAAATATTATTTCTGATATATCATTCACCCTTAAATTATACTAAATCAAA CATATTTCACTTTAGAAATTTTTTAACTGATTAAAACGATAAATGCATTTTAATGATATTATATATAGAC AAATCGTTTTGTAAAGCTCTCTACATGCTCCACTCCACCATTTTCGTATTATGATATTATAGGATATATA TATATATAATTATATATATATTGACTTGACTTGGTTATAATATAGTCTAACCCAAAATATATATATATGA ACATCGTTCTACTATATTAATGGCTAACAAACATCATTAATGTCCTTGCTAATAATTTTGATGGTCCCTT AAAACCAACCCGTGAATCGGATTGAATCAAAAATATAAAGAATCAAAATAAAAGACACCATAACAATAAT AACCCCGTTTCCATGTCTATTGATTATTCTACCTGTACTTACAAAGAGATATGTGGAGGAAAATAAATCA GCATCTCATGCCTATCCATCGACTGATACGTTTCACACTATATATCCAACGGTCAAAATTTTTAAAACAA ATAAACTCTAATATATATATATATATATATCCCCAATAGCACAAAGAACCTTCACTTTTCTCTCCCATTC TTTTACAACTCACATTGCACATCCTTTTTCTCTATATATTACTTAACATAAACCACTATTCACAACACAA ATACACACATAACCATGGCCTCTTCACAAGCTTTCCTTTTGCTCACATTGTCTATGGTTTTAGTTCATTT CTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGCGGC TCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACCACCTATGCCAATGATGGCTC CACCACCTATGGCTATGGCTCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCC AATGGCTCCATCTTCAAGTCCAATGAGCCCACCAACTACTATGGCCCCAAGTCCAGAAACAGTCCCTGAT ATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGG CCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCA TTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAGCGTCGTGTTTGTGTAATTTACTTTCATTTTTTC TCGAGCCATTAGTTTTCATGTTTTATCATATATTTGGGTTTGTGTTTGATATGGTACGATTCAGACATTT GTTTGCTTAATAAGTTTATCGTTGACTCTATTTGATGCATGTGATGTAAATTCATTTTTATCCAAATTTT CACAGACGAACTATCAATAACCAGTATTATCAATATATATCTCGTTGTTAGTTGGATGATATCAAATTAT CAATGCATATGGTGGTTCACAAGAAAAGGAAAAAAAAGAGATAAATGTGTATATATTTAACAAGCTTGAG GTAACTATTTGTAGCAAATAAAATAAAATACGTTAGTGAGAAATGTTATCTTTCTAGAACGAATACGAAT AAAGCAAAAAGCTAAAATTGCAAGCTGTGTGTCATAAGAATCGCATATGTAAAGAAAAAGAGGTCGCCAT CTTGGATTTTTCTATAGAATAAATTATTTTTAATTCTGTGTAGGTTACATTTATTTTAAAAAATAAAAAA TAAAAAAAACATTTATTTTTTTTATTTTTTTGAGCAAGGTTACATTTATTTTATTTCATGGAATAATACA TGTACAAGATTTGAATTTGTAAGAAAATTAAGAAAATTCAAAAAAAGAATGGGAAGAATATGAAAGAGGT AGTGAATAACAATTGTAGGGAATAGGGATAAAGCAGGACTCGAGAGGACAGCTAAAAAGAAAGAGACGTT CACATGACTGTCTTTTTCATTTGCCCCCACCATTTTCCAATGTGTATTATTAGAAATCATAACGCAGTTT AATTGTCTTTAAGTCATGTTAGTTATTTATCTAAAGCCATGTGGTGCATAGGTGCTATGTTTAAATCATT TTTTGAATGAATGTTAACTTTATTCATCAAAAAGCCATGTGGTACATAGGTGCTATGGTTTTTACTGTTA TAAGCTATACAAAAGGATACCGTCTGCTACCAAACCAACATAAAAGAATGTTTCCAAATCTATTATTATC GGATTGCGTCAATAATCTGAGATGATTTCAAACATTCTTGTCAATCATTTTTGCCAAGGTTTGATGAGGC GTAGGCGTAGGACCACAAGCCTCAGATTTTTTGGGTTAGTAAAAATATAAATGTAGATACATCATCAACC TACGGCGTGTTGTTTGTTAGCTATGGACTGTCAAATGTGTACAACATATTTGTAGGATTTGAGATTGGTG TTGTTTACAAGCCCTGCAAGTGAGAACACGGATGTGGCTGGGATGTTCTTGGGGAAGTCCAGCCATGAAG AAGAGATGCATACCGTGGTTTGCAAGCAAATAGCTTGTACATTCTATCAGCTACATTATGTTGCAGTACA TGTTCTCTTTGTCGATGAAGTTTCTGTGATGGTAACACACATCAGTACATGTTTTTTCCAGCCCCAAATT CTCTCTCAACTCATTAATACTACTAACAATAATTGACCAGTCTGTAAAAATTAGCAAGTGTTTTTATACA ACAGTAAAAACAAACAAACTCGCTTCTGTTACTTCTCAAAGATCAACCCAAATTACAAGACACTCTCGTG TGAGAACTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACA TGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAAGCAGCAGCACAAA CAGAAGGTTTTTTGACGACGACTGCAGCTTCCTTAGATTCTCCATTGATCATCGAGGTTACAACTCTTTT GATCCCACTTGCTTCTTTGTACCTGAGGCAACCCTGAGGAAATGCATAAAATTATCAGATCACATGCTGA TATTAAGGTAACAGTTGTTTATATGTGGAAAACAAGCGTGGTTCTCTCAAGTGAGACACTGCAACTACTT TGTTTTCTGATTAAAAAAAAAAACAGTTTTCTACCTCTTGCAGTTCACCATATCTTCAGAGGCATCGTGT CTAACAAGTGTTTTTGTGGATGTTCCTCTTAAATATTTTGACCTGGAAGTTGTGTTCTTCTCAAGCTGCA GTTGAAATTAGTATGTCACATAAAGAAAGAAAAAAGCCCCACGATGACCATACATGGATATGAGAGAACT TACTGGAGCTGGCTCTTGTTTTGGACCCAAGATTTCACCATGGAAGCCAAGAATGTTGGTAGTTTCTTCT TCTTTCCTTAAAAAACATGAAATTATTCTTCCCTCAGAAGAAAAGAACAAACAAGAGTTGCATACTACTA GTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATACTTGA CGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTAAC AAGTACATGAGCAACACATGATAGATAGATACATAGGAGAAACACAAAGTATACACAAAGAAACTGAGAT ACCCTTTGAGTGGTTTTGCAAGTTTCTTTATTGCCAAAGACATTGTTCTTCAACAGGGGGTAGGTTGCTG CTTGGTCGACATTCCTGTGAAATTCAGACAAAACAAAGTATATCTGGTGAGGTGGTAGGAAAAAAAAAGA ATAACTGAAGCAAATAAACAATATTTTCCACACCTGTTATTCTTAAAGGCTGAAGAATTTTCTTTGTCAT TGCTTCCTTCGTCTGCTTTGATGTATCCTTTATTACAGCAGGATCTTCTCCGGCCTGGAGTTGATCGTCT ATATTTCTCTTCAGTTTAACCAGCTTCTTTGGGGAATGAAACACCAAAAGCCTTTGCAACAACTCCTAAA CCCTGCTGGACTCTTCTTATGCCTCAGTTAATTCCTTGTGATGACTTTGGAGTTGCATTCTTGTTTGTGG GAACTGCTTTCACTTCTCTTGGCCTCAACTTACCACCATAAGCTTTGTGAGGAAGTGATGAGATCATAGC CAATCTAGAAACTCGTGATCTTGAAGGTTACCGTGTTGGGGAATTTGGGAGGATCCTCACTGTAATAACA AAAGCATGTAGAACATGTAACGTTAAACACACACTACAGTGACAAAAAGATAAAACACAAGTCTCATAGT TTGACTTTCATGTAACCTCAAGTCCTTTCTGTAAAAAGCTTTACGAAGAAGACGAACACTAGGACTCCTA GCTGCCATGACCTAGGTAATGTTCATCAAACTCAAAAGTCTTAATCTTGAGAGATGACCCGAAGACCGAA TCACTGTGCTTCTGATCACATCCTAATTACACATTATCACCAGTCGGGATTAAATCAAGGGAGATTAATC CATATGCCCTCTACCCTCCAAAAAAATCCCCATTTATCCCTTTATTATAATATAATTTCTTTTTCATTTT TTTTTAAATAGAAAACGTGGCTAAAGACAGATTGCCCTAAACTAATTTAGTTATTTACAAGATCCAACCA GAAAGATCCGACCCATACAATACAAACCCTAAAACCCGACCCATCTAAACCAAAACGATGTCGTTTTGTA TCACTCAACATTCTCTTCTCCAAAATTTTCAATCATCGGGTCTGTCTCTCCTCATGCGACACTCTCTATT GCAAAATCGGAGATTGAAACCCTAGAGTATCTATTTTCGTTCTTCCTTGTTTGTTTTCTATCTAAATCGA AAATCCATCTTCCTTCTTCCTTGTTGGTTCGTGTCTCAACTATCTCTTTGTCTCTCTTGTCTGAAACCCT AAAGTCGAGACCGCTTCGTTTCTTCATCCTCCTTTGTCGAAATCGAGGCTCCATCTTTGTTCCTTGTGGT AAGTGATTAGTTTCCCTTTATTTGGTTGTTATTTGGTCGAATTTGTATGTAGATTTGAAAACAAATTTGG GGAAAACTTTGAATGTGTCTTATGTTTAGATATTGGTTTTGAAATTGGATAAGAACTTGGTAAATCTATT GTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTTTGTTAA TAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTGAG TGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTC AGTCTCTTAGAGTCAGGAAACCGGACTCGGCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAA AAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTC TCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGT ATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACT AGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTAC TTCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGC TCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCC AGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGAT GATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTG GGTTAGACTGCGGTGATTATCCACCAAACTATGAGAAGTTGGGAGGTTATAAGTTTGTGGATTATTACTT CCATGACAGAAAGAAGATCACCATCACTGATGTGAAGCAGAAGATGTTGTCTATGCCGCCGTGTCCAGAT AGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATT TAGACGACTTCATATTAAGGATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAAC GTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGC GCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGCATATAGTTTAGAAAAATTTTAATTGTTTTATAA TTCAAATTTGACACTGTGACAATGGATTTTCTAGGTTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAG ACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGT CCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTGTTGGAGAAACAAAGGTACATGTATAAAT GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACA GTGTCTTAGTTCCAACTATTGGTGAGCAAATTATGCTGGCTCGTATCATTGATGAGGAGCGAGAGTATGA CCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAAGAATATTTGGTGGGAA GAGCTATATGAGTTGGATCAAGCTGCACGAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGT TTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTGGAAGAGAGGATTTTGGA GTTCATGGGAGAAAGATTTGCTGGACTTCACGTCACGGTGGAGACAATGTTAGAGGCTCAAAGCTCAAGG ATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT CTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGATACATA TGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGAGGCTGGAAAAGAAAAG GATAACATCGAGAATACTGAGGAAGAGGGTGAGAAAGAGGCTGATGACAATGCTCAGCAAGAGGGTGAGA AAGAGAAGGAAAATAGTGAGGCTGATGAGGAAGAAGACAGTGAGAGTGAAAGTGAAGAGTTGAAGCAAAT GAAGGAGAGAAGTAGAAGACAAGCTGCTAAATTGTGGAAGGAAATTGCGAATGAGGAAAAGATTGGAGGG AAACATGATGAAGAAGAAAGTGAAGAGAAAGAAGCTGAAACCAGTGAGGAAAAGGATGAGAACAATGATG AGAAAGATGAAGAAAAAGTGGTGGAATCTGAGGCTGAAGGAGAAGATGATCAAGTAGAGGTTGGAGGGAA AGAGGATCAAGAAGAAGAAGTTGAAGGAAAGGAGTCTGAAACCAGGGAGAAAGAAAAGGAGAAAAATGAG ACTGAGGAGGTGGAATCTGAAGCACGGGAGACAGAGATAGAAAAAGGAACTCCGACACCACCACGTGGGA ATCAGACAGAGAGAACTCCCAAAGATGATGACAATGAGCCTCGGGTTGAGCCTCGGGTTGAGACGAACAG AACCGGTGAAACTCCAACACCACCACATGGGAGTCAGTCAGAGGGAACTCCCAAAGTTGATGACACTGAG CCTCGGGTTGAGACAAACAGAACCGGCATATCTATCAGTTTCATCATCCTCTTCTGAAAGTTGCACTTCT TCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGATAACCAAAAA CGTCTTCATCATTCCAGATGTATGATGGCTTGTACGAATACAATACCATTGGAAAGTAACTAATCTTCAC TTGCACCTTAGATTCATCTACCCTTATCTTTCTGCAAATACGCTCAACCAAAGCATAGTAAGTGATATCT TCCATTGATTTCCTCAACACAATCGTGTGGATTTCATCTTCTCCTTCACCACCTCCTGAGATCCATTTTA TTTCAGCCCCATCTTTCATATAATATCCCCCATAATCAAAACAAATGATTGTGCAATTCGGATTTTGCAT TTTCCTGAAATAAAATAGAATATCATTAGAATTCTCATTATTAAGATGTTTAGAATTAATTATCACACCG TACAATCTTCTCTTACTAATACTAATTTAATTCAGTACTATACATAGTAATACTAGAAATTACAGTAAGA AATATCAATATAGTAATCCTAGTATTTCCAGTAAACCTTTTTTCTTTAGTAAAACTAGTTATACCAGTAA TACCCAGAACTTATCCTTGAACTAACTAATTCGCTTTTAGGACCCTATTGTTAGTATTTTACATCAACCA TGATGTATAATTCATCTTAAATGAAATTACACACAGAAAATCATCGAAACACACATAAAAATACCCAAAA TCTATAAACACAGTTTTCAAAATCTTTTTAAATCTCTCATAATTTTCACTGGATCTTCTTTTTTTTTACA CTAGCCGAGATATACACTTTTTTTAATAACATTTCAGCAAAAAAATTCATCCAAAACGGACGTTAAAAAT ACCCGATAGCCCTAAACACAGTTTTTGAAATCGTTTTTAATCTCTCAAATTTTCATCAAATCTTACTTTT TTAACGTTACCTATCATATACACGATTTTTAAATGTAATATCACAAAAAAAAATCATCGAAAACGAACCT GAATTGCCTATTTTTTGAGCTTCAAAAAACGCTAATGGAGGATGAGAGGAAGAAGCTTGTACGATGAAGA AGGAGACATGTGGGTCAGGAGAAATCTGATTGGTTAAGGTTGTTTTGTGGGCCATATAGGTTGTTGAATT ATGGTTGGTTTATTTAATTGGAGAATAAATGAAAGGCTAGTTTGGGGAGTGCAAGGATAAAAGGGTAGGA AGAATAGAGAAGGGGCAGTAAGAATTCATTTAAGGGGGTATGGGGCATATGGAGTTAATCTCCTAAATGA AGAAAACTGTTCACTCAAAAACCCTAATTTAAACACATAAAGTAATGAATTAAGTCATATTTGTCTACTA GGTATATACCTATGCTTTGAGTTTGGAAATTATAAAATGAATTAATGGGCTTTATTGGGTCTAAAGGGGC TTTACATTTTTAACAGGAGGAGGAGGGAGGACCGTCCGATTGAAAATACTTAAGAGGACGAAGACAAATC GTGACCGTCCGATTGAACATATATCCGTTACGGTTTAAAGATCCAACAATACACATACCAAAGGGATTTT TAAGGTTTTCTCCCCAAATGTCTTGGACGACGACGACTCATACAACAGTGAGTATTCTTTTTGCCGATCG TTAATTTGTTTATTTTCCGTTCTTAATCATGAAATTGACGCAATCGATTGAGTTTTCTTCCTCTTATTTG CGATTTTATTCAAAGGTTTCTCTAATCCTCGTCACATCTCTAGATCCTAAATTCGTTTTTTTTTTTGTGA TGCGATGGATTAAGTTTCCTCGTCTTCTTTGTGATTCGAAAATCCTTGTCTCAATCTCTCTCTAGATCAT GTATCTGTGTTTAATTTTGTTTTTAGGGTTTCTTTCCCGACTCCACATGAAACCAACCACCGTCGTCGAG GCACGTCTTTGTCTACAACAAATCTTTGCGGGCTACTTGATGTAAAGCGAACAAAGTAGATCAACAATGG TATATATATACTCGAATCTACTTTGTTTTTATTTTTGAGTTAGCTATTTTCAACTTTTTAAAGTAATAAA GTCTCTTGCTTTCCTCTTTTTCTTGACAGGGTTCCATTACATCCACAACTCCGAACAGAGTCACTGAAGC TCTACTATCGCCTGATATTAGGTAGAGACGACTCTTGTGCTCTACCGATTCTTACATTTGGTTTTAGTTT AATCCCCAAAAAGATCATATAGGCTGACACTAATCTAATAGTGTTGTGCTAGATTCTTATTTGGGGACAT TGTCCCGTCGGTTGGTAGTGCATGCGATGTTTGGGGATGAAACTTTAAGTACCCACGGCTTATTAAGAAA ATGACCAGCGGCTTAAAAAAAATAAGGCAAAGACTCTTGTGACCAAGTCTTTAAGCAAAAGGTTACAGAT ATGTTCATGTTGGATGGATAAAACGAACAACAATGAACAACAACATGTCTTTAGACAAAAGGCCATGAGA TTGTTGGAATGGAAAAAAGCGATAAAAAAAGGGCTTAAAAAGAGGTCTTTGATGAGACAATGATTGTGAT ACCCACGGCTTAGAAAAATTCATAAGACAATGTCTGAATTGGTCTTATTTGTCCCGTCGGTTGGTAGTGC ATGCGTTTGGGGATGGATAGTACCCACGGCTTATTACGAAAGCGACCAACAACTTGAAAATAAAGACTGT AAATTTGTTGGATGGACTAAACGACCAACGGTTTACAATAAAGTCTCTGTAAACAAAGATTATGACTGTG TTGGATGGATAGTACGATCAACAATAGCCGTGTTCGTTTGTTAACCGCAAGACGCTCCCGCTGCGGCAAG AAAAAGCACGGTGATGATGATCAAAATAATAGAAACTTAAGTTAAAGTAACCGCCAACTATTTTCGGAGA CACAAAAAACGAGACGCCGGTGCCGCTAAAATTTTCAGCGTCCCTTCTACTGCTCCTGCGTCATCGGTGT TGCGTGTTGTTAATCGCCGCTGCGGTCATGGGTGTTGTGTGTTGACGTGATTCCCGTTTAATTTTTGGTT GCTGCCGCTGCGTCTTGCGGCTAAGAAACGAACACGGCTAATGAACAAAAATGTCTTTAGACAAAGGTTA CAGATATATGTTGGATGGATAAAACGATCAACAATAAACAAAATGTCTTTAGACAAGAAGAAAAAAGTGG TCTTTGAGGCAATGATTGTGTGATACCCACGGCTTAGATAAATTCATGTGAACCTGTTGAATGGCTAAAG CGATCAACAGTTTACAAAACGTCTTCAGACAAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGAC AATATTGCTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGG TCTTAGACAAAGATTTTGTAGTTTGGTTTTCTGAGTTTTTCTGCTGTAAAGACAACCAGCGGTTAAACAA GTCTTTAGACATCAGAGCCAGAGACTACTTATTTACATTACCACAAGGCTTGAAAATCGTTACAAGGAAA AGACCAACGAGTGGAAAGAGTTTAAGACAAAGACTATCAAAACATGCTCCTTACTTCACAACAAGCCTTG GCAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTTAGACAAGTC TTTAAGACAACGACTATGAACCAAGTCGATTAAGACAAAGACTATCAAAATATGCTCCTTACTTCACAAC AAGCCTTGGCAAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTT AGACAAGTCTTTTAGACTATGAACCAAGTCGATTCTTGGTTTTTGTTGGATGGTAAAAACGACCAACAAT ACCAAGTTTTGAGGATAGGCACTTTGAACCAAACACTGAGCTTGTTGGATGGTAAAAACGAACAATGGCA AACCCATTCTTAGACATAAACTACGAAACAAAAAATTGATGATAAAAACGACCAACAAGCCAGGTTTAAG TCAGAGACTGGGCCGATAATTGATTCTTCACTGCACTACTAACGTGTTAGAAAATTCGTTTTCAAAGTTG CTGTGAGAAGCGGCTTGAAAAAGTCCTTACTATGGGATACAAAAAGACGATCAATCTCATAAAGAAAGTT ATGAAAAAGACTCTGAACATTAACATATTCCTTACTTTACCACTTACAACGTTAAAAACTCACAAGGTGA GTATGAATCATTTTGCGTGAAGTAAAGACTAATTAATTGTGATTTCCTCAGGTTTTGTATATATGTGCTT CAGTAGGATCGGAGCAAATTTCAAGTGTAGCAGATTCTTTGACAGGTATGTGCTCTTCAAACTTGTTTGT TATTTAGTTAATACGATTATGAAAATCACAAGATTGTGACATAAACATGAAGTAAAGCTATATTTTCGTT TATGTGGGTATGTGCTTCACAAACTGTTCATATCCTCCTCACTAATTCCAAGGATTTTCAGGTAGAGTCT TTTCCTTACTTTCTTTATTTATTTAGTTTTCCTTACTTTCTTTCTTATTCATTAGTATTATTACATTATT ATAATCTACAACCTAAGTTAAGTGATATGTAAAGGTAATGAAGATCTTAGCTCCGTTTTTAACTAAAAAC GTTTTATTAAGCTGTCTTGACAACATTTCTCTCATTGATCTAGCATCCTTGAGGTTCTAGAAACTTATTG CTAACATTTCCATTGATGAACAAGTAGATTCTTTTTACTATTAGAACAGTATATTGTGCGTTTACAGTGT TTTACTGTTTTGTAATCTCTATTTTGCTTGAATGTATTATAAGGTTTTTTTTAGTTTTTGAAATGGATGT ATCTTGGAGTTTCTTGTATATCAATGTAGGTGTTAGACTCCTGCAGATTGTGGTGGTACTTTCAATGTTT CTGTTTTGTGTCATGCTCCCAAACCTCCTTGCTCATTATTAACAGTGTTAGAATCTCTGTAGTTTGGTGC TTGTATGTATTATAAAGTCTCTTATTTTGTGAAAATCAGTTTGTCTTGGAGTCTCTGATAGATCAACGTA GGCGAGAGACTCTAGCATGTTGTTGTAGTAGTTTTTCTTAAGAAAATTTATGAATGTTTCTGTTTTGTGT CATGCTCTTAATCTTAAACGGTGTTATTTGGTGCTAGCGTGTATTATAAGGTCTCTCGTTTATGAAATGG AAATATTTTAGAGTATTGTTGATCAACATAGGTGAGACTCGTGAAAGTTGTGATAGTAGTTTCCTTGAAT GTTTATGCTTTCTGCTCATCCTAACCTTCAGTGTTCACTGTTAGTAGTATTTATGTTGCTTAGAAAAATA TTTATTAATTTTAGTTAGATCGGTGCTTGTGTGTCTATTATAATGTCTCTTAGTTTTTCTTAAAAAAAAT GTCTCTTATTTTTCATGAAATAGATGTATATTGGAGTCTCTTGCAATTGTAAACCAACGTTGGTGAGAGA CTCTTCAAAATTGTGGTCGTAGTTTCCTTGAATCTCTAGTGTGTTATGTTTTGTGCTATGCTCATAATCG ACTCTACTACTGATCTTAGATCTTCGCGAGTCCTTAAACACACAAAACCCTAAGATTTATAATCGGCTTT GTTTTCTTTGGACATAAGAAACCGAGAAAGTTGATCTTTTTCCAAAATCTCAAAATGAAAAGAATCGTTG TGTTTAGATTACATGCGGCTAGAGAAATGGTAAACCTGGCCGGTGTTGGAGAAGACGATAAGAGCGAGCA GAGAATCGAAAGATCGTTAGCCTTCTTCATCAACACTTTACGTCTGTTGGTGAAACTGACTTGAAGTCTG TTCACATTCTCGATCTTCTTTAACTCAATCCTTCCTCTCCCCATCTTCTTCTTCTCTTAACACAAGCAAT CAATCTGGGTTGATCTGTAAAATCGAAACAGGAGAAACAGAGAGCTAGATGGAAGTAGTAAGCCTTTGTA TCATAGGTATGTATTTCAAATTTGTTTGTTATTGAGTTATACATTTATGGAATTACAAAAAAGAGATAAA GACATAAAAGTAACAAATAGTTTCATTGGTTAAAAGCATATACCTGATACTATTGTTGGCCGAGGAATTG TTCAGGTATATCCTTTCTTGACTTTTTTTTCTTTGATAAATCGATACTATTACAAAAGAAAATTGACAAA CTAAGTTACACGTAAAAGTAAATAAATTGGAAACGAAGATCTCAGCTCCATTTATAGTTGAAAATGTTCT ATTAAGGTGTATGGACTCTCAGTGTTTTAGCATCTTTGTGAGATTCTTGAAACTGATTGCTAAAATATTC ATTGATGAACAGGTGGATACTTTTTTAAAAAAATATTGGAACATTACATTTGTGTTTACAGTGTTTGTCA TCTCTATTTTCTTCATTTTGGTTATTGTATGTATTATAAGATCTCTTATTTTATGAAATTGGTGTATCAT GAAGTCTCTTGTAGATCAACGTAGGTGATAGTCTCCTGCAGATAGTGACAGTAGTTTCTTTGAATCTTGA ATGTTCTGTTTTGTGTCATGCTCTTAACCCTCAGTGATAATTATAAACGGTGTTAGTTATTTCTTTAGTT TGGTGCTTGTGTGTATTATAAGGTCTTTATTTTTTGAAATGGATATATTTTTGAGTCTATGCTCAAGATA GGTGAGACCCTTTTGCTCAAAAAAAAAGGGTGAGACCCTTGAAAATTATGGTAGTAGTTTCCTTGAATCT TGAATGTAATTGTAACAATGACCAGGAGTAGAATATGCCAAATTAATTAAACCCTATGAGCTCGTAAATG ACCAAACTGAGTTTTGGATAAAGTTAGATACTCGAGATATATGGACTGCAGAGCTGTGCCTCAATGTAAA AATTTGAAGCATTGGCTTAGGGCATCCAATTTTCTCAAAACAATAAGGGAATTTTTTAGTGTTATCAATT CAATTAAAAAGAATACAAATGAAATGAAATGCTTACAGAAATTTTTCTGATAGTTAGAATAAAGAAAACA AGAGTATATTATAAAATTATAATTTTCATATTTACGAAATTAAAATTGTATATAATTATTTTAAATGTAA TACAATAAATAAAAGTTGGTCATATCATATAAAAGATTGTATGATTTGACTATTTTATACTTGTTTAAGA ACATCATATAAAATATTAGTCATATTATTTATTTTAACAGAATTGGTTAAATGATTTAAATTTTAAGTTT ACTTAATATTTTGCTTTGTAAATATAAATACTAATATTTTTGTATAGTTGATTAGTTTTATTTATTTCTA TTATATGTACAAACTACGGTAACATTTTGTAAATAAATGTAGGCATTTTATTTATAATCGCTTAGGGCAG TTTTAAAGGATGGACTGCTTATGGATGGTGAAAAACTATGGTAAAACCAGTACTAAGGAACTACATCAGA ATGGATTCATGTCTTACTATATATTGTTCAATGATACGATACCTCGGTGAATGTGCCCAGCTATTTAGCC AAAAGATCATTGTATTTTATTTGAAGTTCAGACTTCTCAGCGTGAAACTTCTCGTAGTCAGAGACTGAAG GACCTCCTCCTAGTTTTTGCTAAAATCAACCATGTTCCCATCGTAACTATTCCTAAAATCCTCTCTAAAT AAAGGGAAAAAAATGAGAAGTAACAGAGGAAGGTTTTGGTTACCGTACAAGAAGAAGACAAATGGTGATC TAGGTTCATCTTTAAAGCTTGGTTTCGAGATATCATCATCGATCTTGTCACTCGAAACACACTTAAATCT TTTCACTTCACTTCGTTTCTCTCCGCACTCGTGCATATCAAATAGAGCAATCGCGATCATAACTCCATAT TCCTCACTAGAATCAAATCCCAAAACAGAGTATCACAAATCTAGATTGAATCATAAGAAAACTCAAATCG ACAAATCAAAAAAAAAATTAAGACTTTAGAGATGTGAGAGCAGTATCATTTCTCAAAAGTGCTTCCATCA GCCGCACGACGAACAGCTTCAAAAGAGAAAGAAGAAGATAGAAAGAAGAACCCCTTTAATGCTTTTTTAA TTTTTTTTTTGTATTTTTCTTAAGAACCCCTTTATTGGAGGTGGTCACTTGAAGAGAACACTTGGTCCTA CTGTACTACACTCAAGCTTTTTTTTTGTCATCTGTTGATTAACATTAAGGAAACCGAAGGTTCAAGAATT ACAAACTTCGGACACAAGCCATAACAGCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGC ATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG TAAAAGTTCTTATAGTAACCCTTTGTAGAGGGAGGGATTATCTCACTGTCGAAGATGTGCTTGAGCCACA CTGGACACTCAAAAGCTATTTGATCCCCCATTAATTATACCATCCTTATTTGGTACGTTCCCGTTAATAA GAAACTAAACTCGCCCGAAGAAAGCTTCCCATGAGAACCCCTAAGCCTAGTTGCCTTGGGGGCTAACAAA ATCTCATCATCAGAATCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTC CTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTCTTAACCCCAAA CCCGTCACGAGGCGTACTCACCAAGGATCTCTTCGATCTAACCCTAAATCCATCCACACCGTTACTCTCG TTCTCACGATCCACATCCTGATCGTTCGGTTCAACGGCCGTGGAAGTCACCGACGCTAACTCCATAGCAT CCAAAACAGGGAACAGATCCCCCGAGGAAGAGAACTTGCCTGGTTTGGTGAGACACCGCTGCTTCTCGCC GCGGTAACGTTTCCGGAGCTTCTCGATCTTGTGCCGGCATTGGATGGCTGTTTTCGCCGGACCTCCAAAG GTAGGCAACGACGCGGCCACGTCGTCCCAGTCAGCCGCACGGAGGTTCCCACGGCGGAGGGCGAACGAAC CACTTGTCTTTGTAGGCATTGACGAGCGCGGCGGTCTCCTCGTCGGTCCAGCACGGAGGCGGGACTCTCC TGGTAGTGGTGGTCGAGACGGTGACGGCGGTGGAAGGATCGATGGCGGTGGCGACGGGGGATTCATTATC GGGGGTTGACATGCCGGTGGCAAAGAAGAAATTAGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAA GAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAGGAGGTGGCCGGTTTGAGATTGTGCTAAAT TGCACCGCGTAGTGATGACGTGTGCGCAAGTATGAACAAGTTTAAACCGGAAAATGAACCAAATAGATGA CATCACAACACAAGAATCAGTATTCGTAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAG CAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGA TTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGTTAACAAACTAAGAATGTATTATACTG AGTGAGGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCT AGAAGTAAAAACAACATTAAAACTAAGATACTTACTTTGACATGAAGTACACCGTGTTCTGTCTCAAAAC CAACAATGCCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCAT CACCCGACACATTAATTTCACAGATTAGAAGGAAACTGAGAACACAGTAAGAATATATCTTATGAAATCG GATGAGGAGAGCAGTTATGAACATCCCAATCAGGTAGACAGATCAATACAAAAAAAAAAAAAAGGCAAGA GTAACTTCGTGGAGTAGTAAACTATGGCAATCAACCGAGGTAAATTTTTTTAAGACATGACAGATAGACT ACCTGGCCTTGTCCGAAGATCAGCCCAGATGTCCACATAACTTTCTGCCCACCACCTTCCTGTCGAGCAG GCACCAATACATCTTTTTGCTTCTTCAACCAACACTGCGCAGAGAAGAAACAGAACCCATAAACTTATTA AGTCAATCTCTGTAACTTGAACCTATGTCAAGTGTCTTTTGTCCAACACTTAGGCGGCATGATCCAAGGA CAGTACAACTTAAAACAAGGCGATTCTCGCAGACTCACCTCTCCGAACTTGGACCCGCAAGCCTCTTTGT CCCCGCAGAAGACCCATGAATCGCACAAGCAAGGTCCGTCGTCGCCACTGCACATAACTTTACACGCCTT GCAACATTCATCCGACGAATTAAACTTGAAATCCGTCCCCCACTTCACCGCCGAACCCCACAGCTCCAGA TTATCTACTCCACGGCAACACCCTCCGCCGCCATCTACACGGGAGTGATCTCGCGAGTCAGTGAACCGGA CGGCGGAATCGAGTTTGTGACCTTGGGGACGGAGAAGAGCAGTGAAGACAGCGTAGACGACAAGACACGA TATCAGACCGATGAAAAGGAGCGCGGCGGCGGTAAAACGGCCAGGATCTCCGTCGTTTAATCGACGGGGC ATGGCCGGAGTAGTCTCCGAGGGTTGGTTGACTTTTGTGAGGAAGATGCGAAAGCGAAGAGGATAGAGAA GTGAGGTTTCATGAGATATTGAAAATACGAGAATCAATAATGATGAAGAGATGGTTGGTGAGTCAACTCG TGCGGCTGCCTCTCTGTAACCTTTGAACTATCATGGAAGATTGTGATCTCATTATTTTGTTTTCCTGTCT TCCTTTCGGAAGTTTCCTCTACGCTTACGTCAGTTTGAAGTAATCAAAACACTGTCGTTTTAGAATTCCT TTTTGGGTTGAAAAATCCACTGATATATACGTACCATTTGGTTTGACCAAAGAAAATATGTACCATCATC ATTGGTTGTATTAGGGATACTAGATTTTAACCCGCGCTTTCAAAGCGCGAGATCGTTTCTTTTTAAAATT TCATTTAAATTAATAAACATTTGTCGAATCTATATTTTAATAGATTTTTTTATTTGTTTATAGTCAATTT TTATAATATTGTCTTCTTTATTTTTTTTTATTATTATTAAAATAAAAATGTTTGTCCTATATTATCCTAC GTAGATCCTGTTGGTTTGTTCGAATGTGTGGGTTTGAATAGGAAATCGGTGTTGCCTATTTATAATATTG ATCGGATTCAAAGCGAGGTGTTAGATTTTAGGAGAAACTTGGAGAGGAAGTTGGGAGATCTTCTCTTTAA AATCGAATCTCTCTATATTTTAAGATTAGTTTTTGAAAAATTTAGTTACTATGTCAAATAGTTAAAATAT TTTTCTGCGTGTTCCTAAAATTAGGGCATCTTCTTTTTATTTGATTTGATTCCGTAAATCTTTGAGTACA AAATGGGATTTAAAACGATTTAATCAGCTTAAAAACAAAAATGTAAGTAGCAAATTGGTTGGGCTTTTCA TTTTCGAAAAACATTTAAAACAATTTAAAAAACAATTAAAAAAGGAATGAAATGTTTTGTAATTAATAGG AAAATTCAGGGGCAGATTCATAAGAAGTATTCTGCTTTAATAGTATAGATATATCCCATATCGGGAATTC TAAGGGATATTAAATAATATATAAAGGGTTATGATCAATTCATTAATTACTAATTGGTTTTAAGTTGAAA GCTCATAATAAAGAGAAAAAGACCAAAATAGCACTAAATCAAGTTTTTATTCCCAAACTAGCACTCAAAG CCAAAAGTCACAAAAATAACACTCAAGGGGTGGGGTTTAGGGTTTAGAATTTAGGGTTTAGGTTTTAGAG TTTAGGTTTTAGGGTTTAGAGTTGAGAAATGAGGTTTTGAGGATAAGATTTCAAATTTTGAAAAATAAAA AAATTTAAATTTTTCAAAAGATAAAATGCTATTTTGGCCATTTTAATTTTTGAGTGCTATTTTTGTGATA TAAACTTAGAAATGTGCTATTTTAGAGATTTGCCCCATAATAAACCCGAATCTAACATGGTATCAGAGCC CATATCCTAAATATCCTAAAACTCTTAATTAAAAATTAAAATTAAAAATTAACCCTTCCGACGGGGTATA AAGGTCGTGATTAACCCTTCCAACCGGGTATAAAGGTTGTGTTAAACTCGCTCGACTGAGTATAAATGTC TTAAAATTCTGAGATTTCTGGCCGATAACAGCCATCATCTCGAGGAGGGGTATTAGGGATATATATCCAC ATCGAAAATTTTAAGGGACACTAAATAATATATAAAGGATTAGGGTCAATTCATTAATTACCAATTAGTT TTAAGTTGGAAGCCCGTAATAAACCTGAATCTAACAGGTTGGTAGTTTGAATTAGTGCAAGAAGCAGCCG GTTCCAAACTAGTGTAAGAGTTACCATAAACATAAGATAGTTTTGCTTCAATTTGTTATTTATAATAGAT GAATGCTATATTTGTGGAAATTCTCTTAATTGAGTGGTTTAATTTGAGGGTTCGTCAATGTTTATATATT AGTTTCGAGTACAAGAGAAAGAAATTTATGAATATTAATGAAGACAAAATGTACAAATATCTTCAGCATC GTGTAAGTATAACCGTCAAATCGTATATTTTCAGAACATGTATAAAACAGTATAGTTAAATGTAAATTAT CATAAAACATGTTATATAATATTTATAACTAGGGTCGGCCCGGGCTACGCCCGGGTTTTTTGTTTAAATT TTAATTTTGATTATATATTTTGTATATTTATTTAATATATATATAGTATAACCTATTATAAAAATATAAG CTATTAAATTATTTATAACTATGCATTTTTTTGTCTTATGAATTGAAAAATTTTAAATCCAAATTTTAAT ATCCAATTTTTTATATTTTGTAATTGGAAACTTTATATAAGGTGAAGAGAAAAATTAACAAAAATTAATT AAATTTTAGTTATAGTGTTTGATTGGTTGGACTATAGATATGTTTCATTTCACTTACACCTTTTTATATC TTTTGTTTCCAATTAGTTCTAAGCAATTTAATTGACCATCCCCCTTGAAATCTACAATCTTACTTAATGT TTTTTTTTCAAAAATCAGCGGTTAAAATGTTATAATATTTTCTACATCAAAAATTTACAATTACATCAGT AAAAATTACATACTAAATTATTTAAACAAATTTTCTGCATTTATAACTAACTAATCGGACCTATAATCTG AATATTTTTTTATCTCACTTATATAAGTTTTTCGATTACATATTGTTAAATGGACAACCCGATAAAATTT TATTTAAGTTTTAGAACCATTGAATTCATAACTTTAATAGGTGTTTGAAAATTTGTCTTTCCAATTTTGT ATGTTCCGCTTCATCATGCAATATATTTTGATGTAATTGCACCATCTATGTTTATATATACATTGTTTCA AAAAAAAATCTTCTATATATATATATATATAAAGTGGATATATATAATCAATTTTGAACAATGACCATAA TCGTATAACAAATTGTCGTTACCAAAGTATAACAAATTTTGTGTTGTTGTTTTATTTATATTATAGCAGT GATGTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGC CAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTTGCTT GTTCCAAGCAGCAGTAAAGTAATTCACAGTTAACAAAAAAAACAGATGATACATGATAGAGCACCTCCAA CAATCTTGGAGGTTTATGCTTGTAGCAACAACTATTAGATCAACACAGAAGCCTTCCAGGTGGTTGTGAA ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATC AGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATAT GAATCAAATACCTGTCGATTTTAATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTA TGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTG TAGGGTCACTCACAATACTCTTCACAGCTGTGAGCTCACAGATAAGGTCTACAAAGAAATCAAGATGTCA ATATCTAATCACTTTCCAATGTTGATCCTGGGCTAAAGAGATATGAAGACGATTACCGGGAAGGTGTGTG TTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAA CCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTC TGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAG CCGTGAGACGGTGGCGGTATGAGGGTTGCTTGAAACATTAAAAAAATGAAAAAAATAATCAATAAGGGGA TTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTG TCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCA TCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC CAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAGGTTTTGCTGATATTAGGAGCCG GGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCACTGCCTGCAAGGAAGATAA GAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATC ACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAA GTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTAGGGG AGATGACGAACCCCTAGCTTCTTCTGTCGACATTCTCGATGAAGGTGCAAGAGGAGAGACGAACTCAATT TTTGCGTAATCAAACTTAGGGTTTTCGATTACAGGCTGCCGGGCCGCAGAAGAAAATATCAGCCCAATCA CGTTTCACAGTCAAAGCCCATCGGATTAAATGAAGTGATGCGTTTTGCTTGTCTGGAACACGTGTCATGC TGAGGTGGCATCACCAGGAGAGAGCAAACCATACTTTATATATAAAGATAATTTGCAGTATCGTAATAAA CTAGTGAGTTTGTTAGAAAACGAAAACAAAGTGTGAAATTAGGAAAATATCCAATACAGTGAAACTAGTA CACGCACATATACATGTCATAATACAAATTATCTTTGTCGAACTGTGAATAATAGTGTCTTTAGGTATAT AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGA TTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC TTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCAT GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCG ACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACACCACGAAGT CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG GCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCG GAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA AGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACATCTTTTGTAG CCACCAGAGGCAGATTATCTTTTATCTTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTC ATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTA ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG TTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTA GTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA AGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT TAAAGATGCTAAGATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTT GATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT TAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCT ATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT AGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGAT ATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC ATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA AGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACT TGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG GAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAA CAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG AGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA TCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGT TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTG TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGA AATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCA GCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATCTTG GAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGA GCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC TTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAA GCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAAC TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT CTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGT GAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTG GTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT TGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCT TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG GAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGA AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGA GTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCAT ACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGAC ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC ATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAAATCAATCATTTAGTTTGCATCA TTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATG CCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGC CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGT TGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCC TTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGT ATCGGGAACGACAATGCTTGATCTTCATTCTTGCTAGATTGGACACTCTATTGTCTAGCTATAGGTGGGG GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAAT TGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCAGCCTAAAAAA AAAAAGGAAAAAGAAAAACGAAAAAAAAAAAGAGAAAAAAAAAAAGAAAAAAAAAAGAAAAAGGGGGCTA GCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGA GTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATT GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGAT ATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCT CTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGA ATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGATG AGTGTAAGAACAAAAAGAGTTAAGATAGGCCTAGAGAAGCTAGAGTGTAATAAGAGAGTGTGCTAGTTGT GTTTCTTTTGGCTATGTGCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGAC AAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTG CATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGG TATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAG TGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCT ATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACG AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTC CCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCT CTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCT CCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTA CATTTCTAAAACCTATGTTTTAAACATCTTTTGTAGCCACCAGAGGCAGATTATCTTTTATCTTTTGATC TATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGT TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCAT GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAG GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCC ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT AGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGT AATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCAT CTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCC TTAGTTCGATACTTGATCACCCAAGGTCTAATCCTTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAGAA AGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCATTGGTTGCACTT AGATTAAGTGAGTACTTGCATTCCCAGTGCTTTGATATCCCTCAGAACTGGATCGACAATCTTCTATACT ACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAATAATTATGAGATAATATTAAAGTATGTGA TGCAAATACTCTGAAAAGAGTGAATAATAATGTCTTTAGGTATATAGCTAATTATGAGATAATATTAAGG TATGGGATGCAAATACTCTGAAAACAATATAACAAAACTACACATTGTAGTGTTTCCACGTGGGTACCAT AGAAATGGAAAATTAAAACCGAAGTTGAACCAGCCAACAAGAGCATCAGAAAAAAGAAATCAAAACAAAA CTCCACCAGAAAAAATCTTGAAGAGGAACATTAATCTCTAGTAGCACCATCAACGAAGGAAGCACTAGCG GAACCATAAATACGCATAGTTGAAGAGCCATCTGCCTAAAAGAACTCACCACTATATAAGCTAGGTTCAA GCCTTCAAGGAAAACCTTTGATCAACTAATTAGGTGTAATATTTTTTGTATTGAAAATGAATTATGGAAC AAACCGTTGAGCAACATATTTTAAAATGCTTTCTAAATAAGTTTTGAGTGGGGTATTTTTTACGGACTTA CTATACTACCCCATTTGCTTTGAAAGCATATGTCACCTTGTATTTGCTGTGCTCTTATTACCTTTCCAAT CACATTTTATATTTATTTACAAGACTTTGTCCGAATATAGATATTTATCTGCAGTGGACAGATGCGTTTG GGAGCCCATAATAAAGGATAGAGAGACATGCACTTTTGGATGATAGCTGAATATAGAAACTAGAAAGCCA AGTCGATAAACTTATCCATCCCTCCACTCACTCGATCGGTATCGAATGGTGTCGTTCCTATCATCTCGAG GCATTGTCGATAGCCGCTTTATATCTGACACGTGGTAGTAGATTAGCATATGTCCTCTATCATCTTTTTT TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTACTCTATCATCTTGTTACTTACAATACTGTCCAT GTTGCTAATCTTCCTTTACTTGCACTGGAAGAAAAAAGTAATTATCAATCCTAACCGCTAATTTATGATG AATCTAAATAACACAAGACACAAAGTTCAATATTTATGACTAGATTGATAATTATTCTATTCTTTCAAAA GCATTCTTGTTATTTGTAAGTGTTTAGATTCTCTGTGTTTTTTAAATTACATATTTTTGTATTTAATACA TATTAAAAATTGATTATAAATATATCATTTTATATAACTAACTATTTTCTGAAATTTAACAAATAGTACT TGAATAAGCGTAACTTAATTTTTTTAAATTTATCATTCTTAACTGAAAAAATTTACAAATAAATGTAAAA CATAACCTTACAACAAATAAAAGTTCAAACCTTTTTTTAATAGAAGAAATATTAATTTTAACACAATATA ATGATTATAAATATTAGGAGTTGAAATTTCATTTTAATCATTATTGGACTTTTTAGTTTAGGGATGAGTC TATGTGTAATGATATTCATTTTAGCTGTTAAATCTTATATATTAAAACAGAAGTAATGATGACTTCTTTT CATGTGTGATTTTTTTAGTTTGAACCATTCCTAGAAAATATCATATTTTACATAAGTTCGTTATTATATC TTTTAATATCTTTATCTTTTTATTTGAAATACAAATGAATATATTTAAAATGTTCTAACAAAAATTATTT AAAATCTTCTTAGAATCTTTTTAAATTTACTTTCAAAAATTAGTCAGTTTTAATTTAAATTATCATAAAA TATAATTAGAAATTAAAATTGAATATATTTTTGGTTTATAAACGAAAATTTAAATAAAATGAAATTAATT AATTTCACAAATACATTTACTAATAATTTTTAAAGATTTTGTTAGAAATAAATATTTATATTTATTTTAT TTTTTTTTCAAATTTGTTTTCTAATAAAATAAAAATCATGATTTTTTTATGAATGATATTTTTATTTGGA CCATCATTTAAATTTTATATTAAATGTATATCACTAATGCTAATATACATAATATTTTTAACTACTTTAA TCATAATATATTTTATATCTTTTAATTTAAAAAAAATCTAACAAATCTCTTGAAAAAGATTATAATAAGA TCTTAATTGTCATAAATTGAATATAAATATTTTCAACTAATTTTGTAATTAGTAATGAAATGTTACTAAA CGAATAAAATTATATCCTATTTTATCAATTTTATAATAATATCTATCATTTTAAAATAAAAATGTTATAT TGAACAAAGTATGATAAAATTATTTTAAATTGATAAGTTAACATATTTTATTTTCATAAATATAAAATAT CTATGCTAAAAATATAATATGTTGGTAGAACGGGTTATATTAGTAAACTATATAATACATGTATAAAAAT TTAACTTATCTTAAACTTTTTAATATACAGTAATTTATTATATAAAATTAATAAAAATTAAAAAATTACT AAAAAAATCTAGCGATTTGAATTATGGATCATGATTATAATAAATTAAATACAAAATTATTTTCATATAT GTTGTTTCATGCATTAAAAAATTTAGTTTAGTAATCAAACGCAAATTCAATAAGACAAATATATGATAAG CAACATATATATGTGATGATTTTAATTTATAACATGAAAACTATAAAATTATTATATTTGTCATAATTAT ACAAACATTTAAATATGTGAGTAACATTAAAATATATAATAATTATGTAAAACAAATATCTATATATATA AATGTGAAAATATATACCCGCACAGTTGTGCAGGTGGAAATCTAGTTATATGTTTAATAACCCTTTTATT ATTATACGAATACTATTCATTAAACTATATTGGAAGTTGCATTACCCTACAATCGGATTTAACCAATTTT ATCAACATCATTTTTATAAGTCCCGTTATTAATAGATTATGTGTTATACTTATTTGGTTAACAACATAAT TTAGAATAACTAAAAAATGAAAATGATAAAAAAATGAAAATGATCAATGTTTGTTACGCTAATGGCAGAC ACGTAAAGACCGTACAAGTCAAAATCATTGTATTAAGTCACACAATTCAACAAAACCATCCACAAGAAAA GGAAAATTTCATTTTTCTTGCCACTTTTACAAGTTATTGACACAATTATTACCTAAAATAGTCTTTAATA GGAGAGACTTAATTCACCAACCCGAATTCTATAATGGTATGTACGGCATTAATGTTTGAAGAATAAATCG CTAAATCATTTAATTACTCGTGATCTGTATGATTAATGACGTGAGGCATTTAACTAATCACATTAAACAA AAGCCAATGATCAATGGCATAACGGTAAAATAAAGCGAAATACAGGGGTCTTAACTTAACTAATCCTCTT TACCTTAGCTTCAAAACTCAGCTCCTTGCTACTCTTCTCTCGGAACGAAGACAGTTTTAAAGGAAGAACA AAAAAAAGCAACAGAAACCCTAATTCGCGAAGAACCCTAATCTCAAAATTTATGTATGTAAATGCATCTG TAGCAGAACGGCGGTTCATCGGAAAAGAAGCCGCCGCTTGTTTACCTTCCGATCCCAAACCTAAGATCAA ACATCATCTTCCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCAC CCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGCGA CGAACCAGAAGCTCCTCCGCCAAGTGATTCGAGTCCGTTTGATATGCTTCCACCTCCGTTTCCTGCTTCT CCTCTCCGTCCCTCCTCTCTACGTCTTCTTCCTCTTGATCAGTTTCCGCTTCTTCCTTGTCTTCGTCTTC TCCATTCTCGCCTTCTCCTTCTTCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCGCCTTCCTTCGATTC GCCTGATCATCGCTCGCTTGCTATCCCTCAAGCTGAGATCATCCTCCTCCTCCTCCTCCTCTCAGGTTGT TTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAGC TCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTTTATTACTACTCGA TGAAGGGTAAGTACGAAGGGGATTGGGTTGATGGGAAGTATGATGGGTATGGAGTTGAGACGTGGGCTAA AGGAAGCAGGTACCGAGGTCAGTACAGGCAAGGGATGAGGCATGGAGCTGGGATCTATAGGTTTTATACA GGGGATGTGTATGCTGGTGAGTGGTCTAATGGACAGAGCCATGGGTGTGGTGTGTATACCTCTGAGGATG GTAGTCGTTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCATTACCATTTCAGGTGAGA AGTCATCAGTTTTCGTTTGTTAACTTTGTGCGTTCTCATTAATTAACATGCCAAGGTGAGGTGGTGTGGG GTTTGAACACTGCAGAGTCGTTTAACTTTTGTAGAAATCGTGAAGCTTTCTGTATAAGGGCCAACTATTA ACCAGTTTGGAATTGAAATTAATGTGGTTTCTGATAGTTTCTGACTTCGAATCTGAACTTTATTGCTAAG CCTCTAATTGTGTTTTGACTTAGGATGCTGTGTTAGGCCTATGTCTGTGTTAGGTCTAAGTTTATGGCTT TCGATTTTGAATTGTTGATGGATTGTTAGGCTGCCTATACGTTTTGTTGTTGGCGTCACTCACCTTTTTA GGAGCAAATCAATTTTTGAAGATTAACTATTACTGCCATTGATAAATGCACGAGATAATAAATTTTAAGA TTCTGTCTTTCAGTTCCTGTTACATTTGGACCAAGAGTTTTATGTTGGACGGTAGTTCTTACCTTTGAAA CATTATAAGTCTAGGATGGCCTCAAGGTTCAAGCTTTTTTTTTGTTTGCTGGCATAAGCATTGATCTTAA AATAATTCGATCGGTTACTGTGTTGTCTTCTCTAGTGATACCTTCCTAACTAACTTGAAACTACACCTCT GTTGCAGAAATGGCGATACCTACGCTGGAGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTTTACCA ATTTGGAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGGCTTGGTATGTACACA TTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGCA CCCGTCCTGGTTCATCCTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCT TATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAGAG ACCAATTTGTAAAAATAGTATTTAATGTTCATATCATTCAACAGCAAGCTAGGAAAGCAGCCGAGAAAGC ACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAGCAGCAAATTCT GCTAGAGTTGCTGCAACAAAGGCTGTTCAAACAAAAACATATTACAGTAGTGGCGGCGATGATCCCTTAT GAGTTCGTGTGTCAAAGCTTTTGATATAGTCACAGTCATGAATCTCACCTCGAACTTCTTCGGTGACATG AGAGAGAAAAAGAGAGACATCTAGAGAATGGCAGTCAAAATTCGCATCTCCGTTGAGATTATCTTGAAGG TGGAAACCACTTGGAACCAATGTCGAGATCTCATATAAGTATTAAATAAGAGATCTGGCCATGGAGCAAG CAATGCAGGTTTACTTTTTTCATCTTTTCTCCCAGCTCTTTTCTTTTTTATGAGCAGGCTGGTTTATAAG CTGTACATAGGTTGTTGAAGAGTAAGCAATGTGTGTTAACAAAAGATCTTTGTAACAAGCGTAACCCATG TAGAGAAGCAACAAAACATTGTCTTTTACGTTTTCACCGTGTGAATAACAACATCTCTTCTTACTAGATT TCTTTTCAACAGAAAACGACAAGTTATAATCAACTTGACACAATCAACCAAGATGATGTATAATGAATTG ACAGAAGATTACATATATAATGGCCAATGACAAGTGCCAACATATTCATCTGTTCTTGTAAATGGTTATG GTCTTGAGGTACGATCAGTGCTGTCATAAGTCCTAACCATTCAGACACAATTAATGAACCAGAACTATGA AAGAAACTAACCACAAGCTAGAAGAATTAAACAACTGGTTTCTTGTAGCCATAGCATAACCCGAGCTTTA CAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC TCAGGTCCGTTTTAGTCTAACATGACCGGAGAACTCCCAAAAAAAAAACTAGAATAAGAGAAGAGATGCA GAAATCGTTCTCGTTGATCCAAACGGTGGCAATCTCCGGCGTATTCTCCGCCGTCTCTTGCTGGTGAGTG ATTATTCTCCCCCCGCCCCCTTAACTCTCATTTCTTCAATTTAGGGTTGATAATAATATGTCGTGTGTTA ATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGA TCTCCGTCGCGGAGGTTCGGACTCTGGTTGTCCTCCCCATTCTTGAGTTAGGTGACGACGATAGCTCTTT TTGCACTCTTGTTTGAGCAATTATCATTGTATCTTTTGTTTGAGTTATATGAAAAATCACTAGACATTTA CTATCAGTGTAAACCACATTGATTAAGATCATAAAGATTGTAACACTGTACTCTCTCATCTCCCATGTTT ATTATGTATTAGACATCAAGAACATGAACTTTACAATCAGGGCCGTTGATTATTTGAGACTAAATGATCA ATACATATTGTTATTTGATATTTAAATTTGGGGACGAGAATGTTTCATCTCATTATGTTCAAGATCGCCT ATGGATACAGTATATGTGAGAAATTAAACTAGAGAAGTCTCTTCAACCTTCTCAATGATCCTCCTGCCTT TGACAAATCCCACATAAACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCT TAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCTCTTGTTCATTTTTAGGTAAGTAAA TTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAGTCATAT CTCCCTTAACGCTTTCTCCCCTGCTAGCTCAGTTCCAGCCTGCCTTGTCACCTTCTACACTTGTTTAACC AGACCTTCCGGCGAGCAATTTGCCGTGTTTGCGTAATTCAGGTTGTTCTCCATGCAGGTGAAGCTGAACA CAGCACCATGTGTGTTGAACAGCTTACTATTGGTAAGTACCCGTCATGGTTTATTGTGTTGTAAATTTGT AATACCCATCGGTTAGCTCAGCCGCGTTTGACCTGGTGTTGTAGTGCCAGTATATTCCGGCTACTTTTCC TGATAGCTTTGCCCCGGTTCCTTGAAAGATTGCTTTCGCTGAAGCTAGAAGTTTGTGTCCCTGTTCCAGT AACTTCCCTGAATACCAATCCATGAAAAACTTTCCATATTTATTTATACTGTTCCATGTTCCATCTCTCC TGAAAGAACTCAGTATCTTCTGGAAGGTTCTTGTACTAGCCAGCATCATGAGGCCCACTTGTTCCCCTAG TTAGTCTTCTCGACTGATGATTCAGCATATGCTTGAAGCGACGATCTCAAATACTGCAAATCAAGAAGTA TATAGTTATGTATAATATTGGTGCAGTTAACTGTACACTATACAATATCTCACTAGCTTAAGCTATACCT TTTCATAGCACTGAACTCTCCAATTCTCGAGAACCTCCGGGTCCCATTGCTCTCAGGGTATGATGGGTAT CTCAACTCTCCACAAGGTCCCATTCCTACTTGAATTTCCTGCAATACATGAAGAAATGATGTGATTAGGT CACTGCATATATATATACTGCCCATGTCTTATATGAAGTTGATTATTTTTTTCTTTAAAAGAGTCTAGAT GCTTGCTTACCGCAAATGACAACTTCTATGTAATTTCTGAATCTTTCACGGAAACTCCTTATAAAATCTG AATAGACCTGGATAGGTGTACATGCACATAATCACATCCCAAGGAGATATACTCTGGATTCCTTCTCCCA GATTTGTCTGTGTAGACAAGATCAGGGTTCTTACTGATTTCTTCAAGCACCCATGGTTGCAAGGGAATAC TAGATTTTAAAAGAGACAAACATTAGCTACGCTAGAAGTTTGAGACAGATTTTGTTCAAAAGGGAGAAAC TAAAATTGCTTTCATTACCTGCAAAAGGCTCCAACGTTTCTTCCACATTGATGGGAAGACATAACGACGT GGAGTTTGAGACCGTGCATCTGAACCATCTGTATAAGCGCGGCATAGCCTTCCCAGTTATACTTCATAGG TCCATCTTTCTCAATCAATTTCCACCAAGCAAGCACCAACCATTTACAGTACTGCCTCAAACAGGTACGC TCTTCGAACCCTCATTTCGTAGTTAAGAAACAAATTTGTGACAATAACTGATCGTATAAATTATTGAACA TACATCCCCCCATTCTCTATCATGATTCCTTATGTTAATTCAAAGACACTAGTAATGTATTCTTGCCAAG CATATAGATAGATACATGAGCTCAGTTTCTGGTTTTGTTCGGTTAACAATGATAATATGCATGTTGTGAG CCTTATGACCTCTCCGGACGCTTTAGTGCGACTCTTTGTTTCAAGAGTCTACGGTACGCAGCATTGTAGG ACAAACATGTAGTAATATTATGTACATGCAAAGTTTTGAGCTTTATTATGGACCGATGGTAGAAAAAGTA CAAAGGTTATGGATCTGTTCATACATGCATCTGCAAGAATCAGTAAAAAAATAATGAGTAAAATGAGTTG ATATTTTCTTTTCACGTACATAGTTTCTGACTTTGATGTTCGTTGCTTGATCTAATTTAGTCTACATCTG ATTAGTGCTTTGTGTCTTGACGTTGGTTAGAAAAATCTAGTGTGTGAGTTAAAAATCGTGGGATGGTGAC TTGTTTTATTGACTTAAGGGAGTTTGATACAGTTGAAATAATGGTAAAATTCATTCATGTGTGTATTTGC TGGGGCTGAGCTTGAGTGAATGTCGCTAATCTTCGTAGACAGAAGCATATAGTGGCTAAAGCAGACTATA TGGTTTGTGGCTAGCTCAGTGGTCATATGGTTTTGTCACCAATTCATCATAGGCTTAAGTTGTTAAACTA AACAAGTCAGAACCTTAACATCTTCGAAACCTACCACTTAAATTATTACTTACCTATTTGCGTCACCAGA TAGCATGTGTATTTAACTCCCATGTAGAGCAACTGGGTTTGCCCGGCCCCTGGGAATTAATCCAGCCTTC GGGTTTACCTTGGGATATCAAAAAATAGAACCCTTAACAATTAAGCTTTATAGTGTCATTGTCTTGCTTA GATATTTTTCTGCTTTGTGAAATGTGATAAGTGTTCATCCAATAGGTATGTGAGAAAGTTAACGAGTTTG TATTTTACCAATCAAATAAATATCTTTTCGCATTAGTACAAGATATATTCTCCCACTCTCCTCTTATGTT GAAGCATGGCAAGACATAGTCTCTTCACACGAATAAAACACATTGTGTAGAGAGCCAACTCGAACTCTGG ACTTACTCCAACTAGAGTACTTGACACTGATTTTAGAACACAGTTCCACTAGAATTCGATCGTTAGCAGC TGAGTCTCATGAATCAGGCCGTAACGGAATCATAAGTGTGATACCTCAGTTAAACAGCGGCATGTTTCGT TAGCATGTATATTGGAGGAAACATTATGTGATGAATTGAAAGATATGTTACTTTAAACAATTTCACCAGG GAAATCTATATAGCGTTGATAAACAAAGTTTAAGCAAAAAAGAAGAAGCTTCTACGTATTGTGTTCTTTT CAGCTAAATCTATCGAAACTCCTTTAGGTTCTGAGTGAAAGGAAACTTAAAAGCACTATCTTAATCTAGA TTTGGTAGTTGGGTCACGACACTATTCTATTATGTTTTCACCGCTCGCTTCTCTTTAAATGCTTCTCCAG TTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGG TCGTTTGTACTTGCTGACAGTTAGTTGATTTTAATTCTACAAGTACAAATGAAAAGAAAAAAGATAATGG CTCATATACGATAGTGCCATAAAACGTGTTCCATTTCAGTAAATTTCGTAATTAGAGTAACAAATGTTAA CTATTGTGGAGGTATAGTAATTGGTAGATATATCAAAAATATGTTCCTATTTTCTACCGAAATGAGATAG TTGACTCATAGCATGCAAATTTACGAATACATAGTAGTACAATCACAAAAGAGGTGTTTAGAATTAAAAT TGTATTGATAAAATGTTTTAAAATATTACAAAGAGGATCTTTACTTTACTAAGAACACTCTTTGTAAACT TGAGAGATTCTTCGGTACTTAACTCAAATCAATTGGCTCGTATTACAACACACTCCAAACCTTTTTATTT ATAGTCCAATGTCTAAAAAATATTTTTTGGAATATCCTTTAGAACTTTAATGTCTTACAATATATAGTAC ATAAATTATATCTTACATTATTCACCACACATAATTGATGTTGACTCTTTTGGCTAATATGATGACATAG ATATCATAATATTAATATTATCTATGTTAACATCAACTAAGTACGACATATATTAGTTAAAAGAGTCAAC ATTAATTATGTGTGGTGTATAATATAAGGTATAATTTGTGTAGTGTGTATTGTAAGATATTAGATATCTA AAAAATATTCTACTACAAGTCAGCGAGTGTCGCCGTATGCAGATAAACAATGCTCATAATAATCAATCAT AATCCTATGTAGTTTGGACGCCTAAATCATGAAAACCAAAATAATGTTTTTGGTACGATCTATTTTTCTC TCTCGTAACTATCACGTAGCACTATATCCACACAAAGTTAATGCCTCATTCTATATACCCATCAAATGAA TATTAAATACCAGTTTCCCATAAATTCAAAGTTCAAATCTTATTTACCCCCGAATTAAAAATTCAAAATC TATTCACCCTAAACCATTATTAAGCTTGGCTTAATGTGTACCAACATATGTTTAACCATTAAACACCAAT CAAAATCCAAATTAAACTAAGAAAATTCCTTATTAAAGCGATTAATCTCACACTCACTGGAAATAAAACC CAAGACTTAAAAGATAAAAATCCCCAAATCATTAAAACCAGTAGGGATAAAATAATCCGATTCTTCTCGA TTTTGATGATTTGGGAATTTTGATGAGTGTAAAATGAATACCTTTTCTAGAGTATTTTCTTGGTTTAATT TGAGTTTTGCCACGTATATGGTTAAGAATATAATTGGTACACATTAAACCAAATTTAATCATGGTTTAAA AGTGAAATTTAAACTTTGAATTCACGGAAAACATGTATTTAACATTCGGGTACATAGAATCAAACCTTAA CTTCGTGTGGACATGGTACTATACCAAAGTTAAGAAGATCGTTAACCATATAAACAAAATAATATCGATG ATAAAAAAGATTGAAAAATATTGAAAAAGTCTTTCGTGTTATTTGGTAAAAACAAGGACAACAATAAAGG ATTCTTTTACAATTTTATTGAAAGAAACTCAAATGTAAAAGATAAGAAGCATTTATGTTTGAGAAGAAAC TAAACATTTGGGTTTTGTAACCAAGCAAAGTAACCTCCCAGAATGCCTAACTCTGTTATAGACAAATGTT ACACAGATCAACTTAAAAGCTCTCTTTGGGAAAACCAAAAAACACATAAAAAACTCACTCTTTGCAAAGT CTAGTTCTTTACAATAAAGCAATAACTTCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCA AATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTC TTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCAC GGATACGAGTCAGGTGACGACCAAACCTTCTGTTCCTCAAACTCTGTCTGCTCAGCTAGAGACGTCGGCA TGCAATACACTGTGTTGGGCTCTGGCTCCTTGAAACTAGCAACTGCAACGCATCCAGGAGATACGAATCC TTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA GAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGTTAGCACTTTTTTA TGCTCTACACTCGCTACAAGTTCACGGTTGAGAAAAATTCAATGGATTAAGGGGTCATATTAATTGATGA GAGATACTTACAAGGTCATAACCCACTGGAAGTGCAAACACTCCCTCGGTGTTATTGTAAACAGCAGCAA CATTTGGCGGATGGCTACCAACATGAGCTACATCACCCACTGACACAAATCTGGCAAAACAACAACACGA AACTGCTTCAGTTTCAAGAACAATTGAGCGCAACTACAGTATCATCATTAGCGTAACAGATAATACTTAC CCCTCTGGACAACTAGGTCTCCAGATAGTGCACACTCCTCCATCTTCAGAAACCTGAAAGCAAAAAATAA AAGTAAAACAATTGTAAGTAAACCTTGAAACAGTTGATCGTGTGGGTGAATTCTTAAAGTTTCGTCTCAT AAGAATTCTTATTTGACATCTATTGAACCTCAATGACACCGAGAGCAATCAAACGAAAATTACCTGCTTT TTGCACAAAGTACATCGACCTTTGGATTCTCGCTCACTACTCCAGATTTTTGAGAAATTGATACTATGTT TGACAAACTTTCTATCATCTGAGACAGAACTTGAGGAAGAAGAAAGGTCTCTTGATTTTATAATAGCCTT GTTGCTGTACGATTTCGAGTCTCTTCCATCAGCCTCGTTCCAAGCAAAATACACATGTCGCTGGCTTGAA GGAACCTGTGACGAGAAGATATAAAGTGTATTAGGTAGGTGCGTTGCATTCGCACGAGCTTCTCAATGCT TGCCAGTGTTAAACATGTTTATGGTCAAGTCGATATTATTATAACACAGAAGACCAAAACATCTTGAGAA TGGTCATTTCGAATGAAGATCTCCCTTTATTCAAACTCAGTTCATCTGTTTCAAATATTGATCTAATAAC TATGATGAGATAAGGAATAGCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCAC ATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGC ACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCT TTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCACATCCCACATAATCTTGCTG GGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTT AAGACGCTAATGTGAAATGGTATGGTAGTGGGTCTGACCTGTAATAACACAACTCTCTTGTTGGTCACAA TGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATAAAGCGAATTTTGAAGGTTC CCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAACAGA TAACAAACAGAAATCAGAACCAGCTTGGAAGTTTGAGCATGAATGGTAAGCTTGACCAAAAGAATGCAAA TTAATAGCTTTCTGGTAACATTAACAACATAATTATCCTCAAAGGAGACTTAGATGTCAACAATTATATT TAAATAATTCATGCTAGAATAGCCGACTTGTAGTTAGAAATTTTGGATTTGGTCGTAGACTAAAGCTTCC AAAATTTCTCAATATGCAGTCTCACTAATAGACAATAAAAAGAAAGTGAGGCAGTACCTGGCCTGTAGCT TCCTTCTCATCATATTCCCTGAGTATACCATCAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAG CGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAA AAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAAC CCTAAGATACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACAC CCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCCGCCTCGACCAAACCTG ATCCATTTTTCAGCCCTCTATTAGGCAAACTGCCAAAGTAATCAACTTAATTTTGTTGCAAGAAATATGT ACCTGTCTTTCCCTCAGATGTAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAG CCAATGTTGAGCTAGTCATACCCAAAACATCCACTGAGAAAATTAAATGTAAGGGATTGTGGATCAGATC TCTCCATATGCGATTTCCGATGGCTGGAAGTATTGAACTTTTCCGTATGAACCGATCTCTGTGCATTACT CTCCTTAGATGGACCTAAACGTAGATATTTTTTTGAAACATTAGCAACATTCTCGCTCTCTTTTTTCAGC AGTAAATATTCCGAGTATAGCAAAATGATGAATTAGCTTGTGGTGCCAGGAAGTAGAAAGGCTTTCTAGC CACAAGTTGTTCCATGACAATCCAAGTAAAAAAAACTCTCCTATGATGTCGTAAGATCTTCTGAGCTACT TATCCCATGTTGGGAGTCAAAAAGGAACATGACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACA ACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAATCTACCATGAAATGGAACCACGTATCCATAGTTA GTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAGAATGATTGTAGTTCACTATTTCATTTATGGTA ATAACTTCAAAGAAAATCAATTACCTGAATTTTGAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAA ACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCCTTACCTCTGAAA CATCTATGAGGCTGAAAATCAAAAACAAAATTAGGTTTAAAATTTGCTCGATTTGCATGCCAAAATGGCC ATATACTATAAATTTAATCCCCGAAAAATGGTAAAGTTTTATAGAAGGCAAGAATACTTTATATGTATCT CAGGATCAACTTGCGCGACACTAGTACTTTTCGGGAGACGATCCATCTGGAGCTTATTGCAGAAGTCAGC CGAAGCCCAAATGATAGGCTCGTGAATGTTTACTCGCCAAGTATTATCTGTCACCTACCAATCAAATAGC AAATCCATCATGCACTTCAAATAGGATCTCATATGTTTGAGTACATTGAAGATAAACCTGACTAGAATAC ATACCCGTACATATACATATGGATACACTTGAATGCCATCAGTTTCTTCATTACACATAGTAATTGTCAT CTTAAGCACTGGTTGATGACTGTCTCCAGTGTTATCTGGTGCCAGTAGAACTGGCATTAGAGTTAGAGGT AGCTGGTTATCAATCTGTAAATTGCCCAGAATGACTTTGAACCTGTAAACCATAGAAAAGAGTTGCTAGT TCAGATTTCCGAAGGTATTTCATGCGGTTGCATCGCTTCCTAATACGAGAGAACATATGACACTGAAAAA TTTACACGAATGTGCAACCTAAAGACCACAAGTTTTGTTGATAACACCATGTTGCCTAAAATTAGCACAT TTTGATTCGTATTTTCCAAGCATAGGAAAGAACATGAAGTATATTCATATTGTAACCCATTTATACGTAA AAACAGACAAAAAAAACAAAACAATACTGCAATATTTGAGTTTACCTGCTAGTTCTTCCCTCATCATACC CAGTGGAGTAAGATACGAAAACTTTCTCAAGGTAAAAATATGATAACTCTTTTGGCACGTGATCTACAAG AGAGATCCCCACTAGTCCCATTTCAATTATGAACTCCAGAGTGGTGGTCTTTTGTTCTGAAGGTGTCTGA CGAGTAGAATATCTATTATTCCCAACCGATGATAAAGATATGATTTCATGAGGACTCTGTGAAGTACTGT CATCATCAGTGAATCTAGCAATCTTGATGTCACCAATTTCTTTAACATGAAAGTTCACCTCTAAGTCCCT ACACAATTCAGAATCCACAACACCATTTTCCATGTCTAGTCTGAAAACCCCAGAGCGGTGATCATTTTCA ACCTTAGCATCCAAGAATTTCTGACCATAAGGATCTTCCCAAGCAAAATTTACTGTCGTAAGAGGTTCCA ACAAAACCCACGAATCTTCACCAAAACCTGATTGGCGGACACTGATTCTTTTGACAGCTGTTCTATTCTC AACCCTTGTTTAAGAAGTTTAAAACAGAAAAGAAATTAGTAAATTAATGATGGTTTCACAAATATGTATT TACTAATTGTAGAGAGGATACCTCATAGGACCATTGCTTGGTCCAAGTCGAAATACAACAATAAAACGTG ACCCTTCTTCAAATCCCCGTATCTCTGCTTTCAAAAATCTACGAGCACCATTTTGACACCTTAATACAAG AACAATTGTGTCTTCTCGAGCAACTTGAACAGGAAATGACCACTCTGTTTCTCTTAACCGAACCTGAAAA TAGGCCAGAGAATAAAAATTATACATCATTAGATAATAACAGAGATGCTCTTACCTCTCAAATGAAAACA TACGTGGTGGCCAGGAGAAAGCATCCACATGCCAAACAATTTAACAATATAAAACATAATCGATTTGCAT TCAAACTTTAATTCACTGCTCACTTCAAGAAGTGTCACTGGTTTGACTGAGAACATATCATACTACATGC TCCAGTGGACATCCTAAACAACAGCCTTATTCATTTTTTTCTCTCGCAGTTTTGCAACTCATTGACTAAA ACAAAGATAAGAGGAATAAAAATTAAAAAAATTCTGCAACATAAACAGCTCACCTGGAGTTCATCTCTCC CACTTGGTTGGAAAACAAAGGAGACCCGCGAATCATATGCATTGAGTACCTTTGGTTCATCGTCACTGTT AAGTTTAATATATATATCTTCACCGATCCTGTTGGTGAAAGTCATGAATGGTCGAACAGATATGATCTGC GAAGTAAATTCGAGTCAGCAAGTAATAATAGAGAAGGTGTAGAAAATAAACTGCTTATTACCTTTGTAGG AACTGACTGATAACCGCAAGGTTTTGTAGACAGAAATAGCCGCATACATTTTCCATCGGGATCATACGCA TCAACATCCAAAGATCCATCCTATCAAAATAAGTACGAATCATAAGAATGATAGGGGAAGCAAAGCTCAA TTTTAGAGGAAACTAGTCTATCGAACAAATAAAATAGCATACAACTGACCATGTCACCAAGGGCAGAAAG ATCTTTTGCAGGACCATGTTGCTGATTGCCAAACTGAGATATAGACACTGACATGCCCATATGTTTGAAA TTCAAAGTAGAAGCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCAT TTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAG TGTAAGCGAGGGACATCTTGCAATCGAAAACCAGAACGGAGCATAGATTCTGATCATCTTCGTCAAAACT TTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCTGTTCGCATATATTCAACAGTATG AGACCAAATAAACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCA GAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAGCTTCCTGCCAAA TTCGATAAACCAAATAACTAAACAAGGGAGAATAAAAGAAATGGAACAACAATGTGTTCCTAGCTGATGT GAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCAGCAAGGAAAAGTAT AAAGGCTTCCTTATATCGACAGTATGCACCTTCACAGTTTCTCCAGAACCAATGAATTCTCTGCTCTGAG AATGACGAATCAAATCACCATTGTCTTGCTTCTCTAGCACTGAGTACTCAGCTCCAAATGGAAGATAATT TGCTATAGAAAACGGTGATTTGACCACAAGAGTCCAATCCTGAATAGGGTCCGAACGTATATCTTTAGCG ATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACTGCTTATCT GAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATACATATTTCAGACTCTGATTCACAAGC AACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCATCAGTCATTACACAC TTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCCTGACAAGGGAACCGGTAATATATCGCCAGGCT TCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTC AGTATTGTTTTCCACTGAAACTAGAGACCTGACATTTACGTATCTGTTTCCATCCTCCATACTAACTTCA CTTGCAACAACATCATTTCCCAACCGCCAGCAAGCAGCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCC AAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATTTCTTTTCACTTGAGGATTTTCCTTGCTC CACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTTGATCCCCT TGGTTCATGCTCTGCAGAAAACATGAAAAAGGTAAGAAAACTATTGCATTTATCTTTTGCAATCTTTGAA CCCAAAAAGCCGTGACATTTGCATTTTTAATATCATATTTGGACAATGAAGTCTACATAGGCGAAAGGCA TTCAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGT ATTGGTTGTCCTTCATATATCGTGCTACCTGCTTGCAATGGAGCTGAAAATGCGCCAACAGGTGCACCTA ATTTATATACCAAAAATGAAAGAAACACTTAACTCAGATTTAGTAGTGCTTGAGATGTACGACGAAAGAA TGAAGGAAACAAACCATTTCCGACGTCCGACACTATTAATTCCAAGAGATAGTCATCCTGGAAAAATAAA AAACAATAAAATATCAAAGCCGCAATAACCTTGATCTTGAAGACCAAAAAATAACAAAGAGAAAGAAATA CTCTTAATATAATTTATTCTTAAGTTCTTGTACAAGAGAGGTACATGCACCAAGATTAGTAACTAAGATT TGCCAAAGTTATAGCAATGCATAAACTGTTTCAGAATCAATCTGAAGAACACAAGTAGTAGAGATACAAA TGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCC AGCAGTATTCAGGGGATAAAATAAACATTAGGCCAACAAAAGAATGTTAGACATAGTGGAAAAGAGAATA CCAGCGAGTCAATTTTGAAGAAAAATATTTCACTCCAGTCAACGACTTCCAGCTCAGAGGAAAACATATT TGAAACACTTCCACAAGTACGTGCACATTGCTGGCGAAGCACTGGCTCCGTTGGGGAGGTCTGTTTGGGA GAGAGACGTATAACTCCAGTGTATTGATGAGAAGACAATCCAGAAATTCTTGGAAGCTACAAAAAAAGGT TATTCCATATAACACATTCTCCAAAGAGTCTATGAAAAACAAATATCATAAACTTAGTAGAAAGAGTCGC ATGGAGCATCAAATGAAATCACTTCCTTGCTTTATTACCATAGAAAAGTAAAAGAATAGGAAATAAAAGG AGATTCATGAGAGCCTGAGCGGTAGAAGTATATGAATGAAAAGGCATCACGACAAATGTGACCTTTGTTT TAGGCAGAAAGGTACCTGTGCATCCACCACAATAACTGTAACCATTATTCTAGGGTTACTGCATAGTTCT CCTCTGAGGTGAGAATCCAACATATTGGTCAAGACGGGAACTTTTACAGGTCTCATGTCCCCAGATGGCA TCTTTACAATATCTTTAAATCCTTTGATTTCGGTGGGTCTAATATATATATCCTGCCCAAGCTTGTTTTG TGGAATTATGAAATAGGTTTTCTTCTGATGCACCTCAATAACAGATTTTCCATTGTCAACTAGAGGAAAT GCGCCCTGTAAGACGTAGCAAACATAAATCAAGAGAGAAAGAAGACTGCGTCACCATGTGGCACATAGGA ACCAAAGGAGAAGTTCTCACTCTCTCTTTATGGTATTCATGGACGTTGCTAAGGTTGTTCCAACTAGAGT ACGCCTGGATAATTGTATTAGCATTTGAAACTGAGAAATTCACATTCAAGTCCGTTGTAGATGTCAGGCG TAACTCAGAAACCGCACCAAAGGATCTAGGGTTGAACTGGTACCTACAGCCCAATGGAGCGTAGCCATTA TATAGAATATGCTCGACATTAGTTGGAGTAAATAACAAACAAAATAAACAGAGCAAATCACCCGCAGCCA CAGGTGTTTAGACCTACACATTTCTGTAATAATGAGCTTTAAAGTAACACAAAATTAGAACAAAAAAAAC CTTAAGAATCCATCTGCAGGCTCGATGAGAGGCTCCCACGCTTCATACTTATCATTGTATGACCTTGCCG CTAAGGAGAAGTTGATGGTTGACTTTGTGTAGTTGGTTTTGCCAAGTAATCCAAAACATATATTACTCAA AGATACATTAACCAATGGAACCATCTGCAAAGTACATAGATACGCCATTATTTTCACGCAGATAAGTACG CCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCC AATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAAT CTCCTTGGTGGTTTTTTCAAACCACTACGGACGATAAAGGTCTTCAACTCATTGCCTATGCCCCATATAC TAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGC TACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATGCAACA CAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTT TCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAGGATATCTTGCTCACCATCATCACGAAG AACCACACAAGAGTTTGGAGGTTCATACCTACAAATTAACCCCCGAAAGTAATTAACATGCACCTTGCCA CCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAA ATAAGCCATCCCCTCAGTAATGATTGGTCTCCATATTGAAACTTTCTTCTGCGAGCCTGAGCCCCTATTC CACCATATCAACTGAAAGGAAGCAACAGCTTCAAATCGCTGACCAGATCTAACAGAATTCAGTGGCTGTG ACTGTGGCTGTATAGGCTGAATATTATCAGTAGTACGAACATCCACGTAGCTGGATTCTTTTGGCAAGAC TCCAGTGGATCCAAATAATATATGACGTAGCTCGTATGGTCTTCCTGATAAGCTGAGAGAAGACGGATCC GCAGGTAAGAAACTGCCAACAGAATTATCCACCCGCCAGAATGCTAAACTTGATTGAGAACTGCATTGAA TACAAAAGCAAGCCTAAAATGTCAAATCATCAATGAAGGAAGATAAACCACACTGAGGTGACCAGCACAG ACGTACACTGAAGTACTAAAATGGAATCATTTATTAATATTAACCAAAATCTGACAAAAAAAAACAAATG AACAAACAAATTTCTGCATCTGCAAAACCGGATACTACCAACTAAATTCCAGTTCGTTTGAAACAAGCGC ATGAAACCAATATAAATCACATAGACACATGGCAAAACACATACGAAATGTCAGGAAAAACAGACAGTAA GCATGTTGGCACATCTCTACAGAAGGGAACATGCAGCATTGTATCCATGTATTCAGAAAGTGAGCAACAA CTAAAAGTGAGAGGTTCGTTGCAGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACA AGGGGATACGGAAGAAGCTAGAATGCAGAAGACAGAGGCCAGTGGAGGCGGTGTACATCCACTGGATACC ACACAGCTTAACGCCACATAACCCTTTGGTGCTTCAGGGAACCAAATGGAACACAAATTGTCTCTTTCAT CTTTGTCATCCGTTGAAGTATCACCTAACCCGTTGGAAGCTAAAGGTGACCAAATCAATCTGAAAGATAA AGGCCTCTTCACTCTCATCAAATTGGTGTTGACAACAAGAACCCCTTTAGTAGGTGGTTTGTCCCTGCCA TGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGAT GACTAACAATGGTGTCAAATAGTCGCCAAGACTTGCAAAACCAGGAGGCGGATGGGGTCTCCAGAATGCA TATTTTTGATCTGTACAGGGATCTGCATGAAATGTAAGTAAGTACCACGTAACAAACCTTAAATGAACTG AAAAATTTCAGCAATAATTGGACATACTTCTGATGATCCCGACTTTATCAAACTCTGTGCAGACGACAGT CATTTTTCTGGATGTCATCCTTAGAAATGATAAAATGTCTTCTTCAACAGCTATAAACAATCTCAAGATG CTGAATGAGAAGTTCATAAATATGTTTGAAACTGAAAGCTCTATGTTAGTCGTCCCAGAAACACTTGAAT ACTTTACAGAGGTGTCGAACGGTTCCAGAATTTTCACTCCATTACTCTCCATGGTCAGACCCAATGTATG AGCACTCATTTCAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGA TAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTC AGCTCTAACAGTAATATCACGGAGAAGCCATTGACCTGCCATAAGCATCCAGCTGAGCATGCAAAAGTTT GTTGGAGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCC TGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCCATACAAAGA AGAATGTTAGCAACAATAAGAACCTGAAACTCAATGATCATTTCCGTGGACTTCTCCGTTGTGATGCTAG GAGATTGGGAAACCGGATCTTCCTTGCTCTCAGAGTCTTGTTTGGGGACTTTATGATATTCTTCCAACAC AACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGG CCATTCTTGATCATAATAGAAAGAAAAGTGAGAAACTATAAGGACGACAGAAATAATAAAGTTCAGATTT GACAAAGAAATAATGTAAGGACTTCTGTTGTACCTTGAAGATTACATTTCTGAAATGCAACTTTTTTCCA CTTCCCACATATATAACAGGCTCTGTACTGGGAGAAGAAAGGATGCCTCCATGTCTATCTTTCAGGTACA ACGTTCCACCATTACCATCATACACAAAATCATCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGG AGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATTA AGGTTTTTATCCTCTTCACTTGATAGGACACTTACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTA GAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAA TTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTT AATCTCTGATCTCCATCAGTCAGAGAATGTGAGTCACCAAAATCTAAGTCTGCAGGTCTTCCTACAGCAA GTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAAGGAA ACCCTCATCGTGTGTATTGGATTTGTAGAGAAGCCAGCCACCAGAGATCTGTAAACCAAACACGATAGAT TTAAGATGTTAACTCAATGTGCCATGAGATTGTTAACATAAATTTAAGATGTTAACTCTGCTGTAAAATT CCCTTTGAGATTGTAACATAAAATCTCTACGAAGCAACAAACATGAGAAGAAAAAGTGGGAACAAAGAGG GGGAAGAGTAGAGTCCTATAAGAACGATAAAATTGCTGATCCACAGAACTAGAAAGGAATTTAAACAGAA GCCTGATTTGATAATGTCAAAGAGAAATTACAATAAAGCAGAAATCAAATTACTGAAGTCTTTCTGGAGA ACCAATTCCGGACTGAGTCAAGGCCTATTCAAGATTAAACTTCACAAATGCATAGGCCCAAATTCTTAGT CAGAAGTTTGACATCAAACAATATTTGGTCAATCACTTTTATCCCCCAAATCTATCAGCTATGACAGGTC CAAGGGACATAAGAATACTATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCG GACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACAAACACAACTCCACCAGATTGATG ACAACAGAAACCTTCATTGATATCCAAGCATCACTTTTTTCAGTTTGAGCAGCATTAGGATCCTCGGAAG TAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGCGGAAT CTCAGAAATATTAGACTGTGCACACTCTGTCAAGATCTGGTATTCCCTATTCGAGAGGGCTGCTCTTAGT TCGTCTATCTGATAAAGCAGAAATTTAAAGAACGTATGAGTAAGAAAGTATTATGCTACAGACTGGATAT AAGACATTATCCTTTACCTCTACAGAGACTTCAATGCTTGGTATCTGATGCAACAAGTCTCGCAGAGACC TGTTAATGGTTACAGAAACCCCATTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACCAAC ATTAAGGTTGATATCCATGACCTAAGTTAAGGTTGTTTTCGTCAAAAGGTGTAGAAAAAACTAATTGTAC GATAAGGTAGTATGAATTTAAAGTGATATCAACCAGAATGAAATATGCTCAACCCAACAGCCAAACAACG AGAGTTCTCACCATCACTTTCATAGTTTCCATGTGAACTGCATTCAGCTCGTTTTTATCTCCAGCAAACC ACTGAAAGGTATTGTTCACAGTTATATGCACAACATCAAGCTTCAGGTAACTGCAAATAAAAGAAAACCC GAAAAGTAGAGAAAGGTAAATCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATA ACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATCAAAATCCAAGCATGAACTTACTC AGGGCTCTCAGTATGTCGAGGCATAACAATTATAGGCTTCTTAAGAGATAGATCCAACTTAAGAGCAGGA GATCCTTCAATTTCGCTAGTCGTAAACCACTTCTCGGAGTCCGTAATTTGATCCTTCATCTTGACAACCC CTTTTGAATCGCTTGGCACAAGCCCCATAAAGTATTCAGCAACCTACATTGCAGAGACTGATTGTAGGAA GCAAGACAAATTTACTCGCATCTACGTAGAGAGAATAATGAACTACCTCTTGAATAAAGCGATTCAGATA AACAATGCGCACTTCAGAAAGTTGTCCAGAGAGGCAGTAGTCAAAACCTTCATGGTCTTCATCAATGACA CTGAATGATGTAAATGCCAACTAGGAACGGAATCAAAGAAATGAAATTAACACGGAAAAAAACTCATGCA TCTCATCTGCACATCAATTCATATTCAACGAAAAAAAGAAACAAACAACGAATACCTCAACAAAAGAAGT TCCTCCAGGGTCTCGCATATCACAGATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATT CGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTA CGGAATACCTTGGATATTGATAGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAA AAGTATAATCTAACCTTAATATCTGTTAGCAAATTGTCTTGTGACAATGTCGCAAACTTAGTTCCATTCT CATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTT CCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCT CCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGATAGCATTTACAAACT CCAAAATAGCAAGAATTGTTGGCCTCCGGCAGTAAAATGATAATGTGGCTAGGCTTACGGTCACCTACAA TGTGTGAAACATCAGCCACAAAAGATAGTAAGCCTTGACTTTAAAACAACGGAAAAAACTAACATCTCCG GACTGAAAGATGTATAAACAGAAATCTCTTGACCTGATTATCAATATTATTATATTGAGGTGACGTCTGA TGGTATATGACTATTTGAGCCTTAACAAAACTATCCAGAGACTCAATTCTCTCACTGCTTGGCATAGTGA TATTCCTGTTGTCGACAGGGAGCAATCCATCCATTCGACTAAAACTGGGGGTCCTAAGAGATGTATAGTC AACGGAGTCAACCAAGATCTCTGGTGCTTCATAAAATTTTTCCTCCCCTTCGCTAGAAGAAAGATCATTT CCTTCAGGGTTTTTAATCTCAGCATCTTTAAAGGATGGAAGCACCACAGAAGACTGAATAAAAGATCTTG CTAAATAACAAGACTCATTTGAACCAGAACGGCTCACCAAATCTTCTATTTCCAAAGATTTTAGAACAGT CCCAATAAACATATCACTCCCTCTCATCGAGACTTCAACCTGGTTCGACAAAGACAAACAGACATTCATA AAAAGGAATAAGAAATGACAAAGATAATTAAGAAGCAGATCATATACCTTCCCACCTATGGCCCTAAACT CAAACAGTTTACTCTCTCTTGCAAGAAGCACCGCCATGAAGGAAGCATCGTGCTATATTAAAATATACTC AGTCAAAGCATGTCCCATAATAACAACAAGCCGTGGAATTTCACACGCAGAAATAATTTATATTTACCTG TTGACCATAGCTGAAACATATTTTGAGTTCATCAAGCACACCGGTTACATATAAACTCTCCAACTTAGAC AAATCCCAAATATCTTCTTTATGTTCTGTTTCTGATTCCTCACTGTCAGATGACGTATCCGAAAGACCGG CTATGGGAGCAGAACCCTGTACATTAAAGTGAAATTTAAACTTAAATCATCTATATAAACAGGTAGATCA TCAATGGAACTGTCTCATGGTAAGACGTCCTATTGATAACTGGAAGTAAGGTTCAAAATTAAATTTACCG AGGCCCGGTAGACAGCGCTCTGCAAACGGCTGTGCCAAGTCTTTCTAGACTCTTCAGAATCAAACATTAA TATGAGTGCATTCACATCCTCCATAACCTAGAGACCATAAAATTAAAATATTCAGCGCCAAAATTCATTG AAGTTTACAATCAAGATCCTCGAATCCTCATTGATGAACACACAATAAAAACATAAAAGTCATGACCAAA CTCCGCCTGCATTTATTAATTCAACTACATGAGATGTAAACCTTCTCATTGATTCGAGAAGCATTGCGAA TGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGTAAGCT ACAAAAGATACAAATCCTTAGAAATATGACAAATACCAACTAGAACGAACAGATAGAGTTAGGAAAATAT CAAAACAGCTAGTAACTTTAACTGCTGGGTGAAACAGCATAAAGTTTAGGTAATGAATTCTTACACTAGA TTTATGAACCTAGATAACTGGACTTTTAGTGGGTCTTTAGTTAGACAAGGAAACTTAATAAGCCCCTTAA ATAGCACAACCGAGAGAAATTCATTTCTTCCGTGTCTTTTTCACCTTGACTTCACTAGTTATATAATACA ATGCATAGCATTGGTTTAATTTACAAATGGCTACGATAACATAAACATTGAGCAAAAAAGGCAGTCTTGC CATAGTCTTTCCACATGTCAATCCTCGTATCTTATTCATTGTAAACACACGCAAACATTACATATAAGAG TACTGCACTTCATCGAGTTTGTACAGACCATCCATTTTATCTAAAGTCTAATCTATAAAGCCTCATCCAT TTTATCTAAAGTCTAATCTATAAAGCCTATCACTACTATAACGAAATTGCAAGAGTTCGAATCATACCTG GTATACTGCTTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGT ACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAATAAATAAATAGTGTCCAA GAAGATAAGAGAGCTTGCAACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGT AAAGACAACCAACCCTCAAAATCAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAG TTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGTGAGAAGTGAAAACCAAGTGACGG TAGCCGCACGGCAAGTCTGGTTGACGGGTACGATGGGTTTGGCCTACGAATCTACAAACCAAAACAGGAA ACAATAGTGCTAAATATCTACAGTTTGAAGCATAACTCTTTTACCAAAAATGTCTATGCCAGATGTCCAG AATTTTACCTGTTGTAGTTTTAAGAGTACCCCACACTTGTCAATAACTGGCAAGAAAGTAACACTGCTTT CCTTACCAGAAGATTTTTTCGAGGATAACTGTTTCCAGGAGTAGTCACCATCAACAAGTAATGCGGACAC ATCACTCAAAACTAAATCAAACTGTAGATACATATCCATTTCCTCTGACAGTTCACGCTTATAGTCGTCC TGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCATATTGTTAAAAAAGT TGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT AGAACGATGGTTATCAGGACGAAATTCGGTTGGAATTGTGATTTTGGGTGCTGCAATGTCTAAGTCGAGC AGAAACCTGGTTGTTTTGTAAAACGTCATTTACTAAAACAAGCATGGGCATAAATTTGACCACGAGCTCA TGAGAGTACGAACAGACCTTGCATGATCTTTCAATGCTCTATTCATTCCTTGTTGAGCAGTGCGTCTAAC TTCATCAATAGTTGACTGAGACGGTAAGCAAGTGAATTATAATGATTAAAGTGGCTCCCACGGGCAGTTG AATATAAGTAAGGAACAGAAATCTAATTCGAACAATTTTTGAATACACTGCAAGGATCAAGCTCTACAAA TTGGAAAGTTCGAGCAGAAATACTGACAAAAAACAGAAATGCATACTTACTAGATCCCATATTACCATTC CTTAGATTAGATATACAGTTAATAATGAGATTACAATTACCAGGCTATATAAAACCAATATGCACTCATT TTTGTCAACTTTTCACACCACGGCAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATT GTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAATTCCATCAATAGAGTCCTTCAGATACTGCA GGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATACAAAATTTTCTTAGAGAGAGGGG CACGCACAGTCATATAACACGGAGAAGCTTTTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTT ATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGCACTCTGCAAGAGAAGAGACATTTTTAAGGGA TTTTAAGAAATCACTGACAATGTTCTGTAGCCTGAAGAAAACAAATTCCACCTAACAAACCTCAGCAAGC GGGCCATTTGGCGATGACAAGCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCT TAATGGAGCAATTAAGATCTTCACATGATAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGA AGCATTACGCCTCATGTGTACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGAC TGCTCATCACCTTCTTTGTACCCTATGACTTTATTTAACCGTTCCCAATCTTCATCGGTGAATTGAACAG ATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATACAAAATACTTTAGAAAAAAATTG GGAGAAGGAGTTGGGAATTTGGAAGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTT AGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTT CATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTACTTTCGACATCCTA CTCATGTATTGACAATGAAAAGAAAACAGAGAAGCATCATAGGTACAAATAGAGAAAGAAATAACGAATT AGTCCTAATGAAAATTTATAGAACTACACAAGACCAAACGTTTGAGAAAGCTAATTGATCTGCTAAGATG CAACTAAACAATAATATTTTACCTCCATTGCAAAATGACTTCGGTATCAAGTCCCCGATCAAGGGCCTTG ATTTCTTCATCATCATCAACCACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGT ATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGGTAACA ATCTCAGAAAACGTAAACAGAAGAGAAGTGAAGTTAGGAACCGCAAGGAAACGGTTTCCAAAACGAATGC AAATTATAGAGAAATACGGCAGTAGCAAGACGACAGAAATGAATATCTCTAATTCGATACCTTGCTATCT TAATTTGTTCTGAAACAACTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGA TGGACGGTAATGTGCATATTTCAAACGCTGATTAAACGCAGAAAAATTATCAGCAAGTTTCATGACATCC CTGTATCCTCCCTGAGACAAAAAAAACACACACACACACAATCTAGACCTCCGCAGACATCCAAATAAAA AAAGAAAGAGCAGGAGCCTCAAATTTTGGCTTAACCTTTGATAAACAAAGTGTCACATCGTCCAAGTTAA CATATGCCTTCTGCAAAGGTTGATCAGTATTGGAAGAACCATTTGCTTGGGACTTAATGTACTTTGCATT CCCTGAGACAGGTTGCAGAATATAGAAATGTTTTCTCGTTAGGTCTTCAGCTGGCTTACCATCTTTGGTT CCGTATCTAAAAATCTAGAAATATGCATGCACCAAAAAATTAGATTTTGGGGTAAGAGACAAATTATGTT CCACTATATACATAACTTCGCTTATGAATACCTGATCCCACTCAGAAGGAAGTAAATCCTCCCATGGTTT GTCAATATACCACGGAGACATGTCAGAATCAAGATAGAATGCAAGCCGATCAAGTTCAACAGACTGCACA AAGGCAAACATAATTATAACAGGAATGTAAAGTGCCTTTGTTTTCTTTCTTGGCAGGGGTGATCCTTTCA CCATGCAATTAATCCATATATGAATTCCACATAAAGTTTTTCTCTATATCACTAACCCTTCCGGAGAGCA CCCTAAGTCAATCTTCCTCGGGTGCTTCTTACTATACCCACATAACTATTTGAACTAGATTATTAAAAAC AAACTACCTAGCTACTTACTACAAGCAAGCATAAGCGCAAGAGATCTGAACACAACACCTTCCCAAAAGT ATAAAACCGAGGGACAGAGACCTTTATAAAATGTTTTCCATAAGACCAGAAAAGCTTGTGCCAGACAGAT ATTAATGAGCAAATTTATACCTTTTGGATGGAAGCCAGAGTGCCGCCAGTAATAAAGGTCTCCTTCCCAT TCTCATCAACTGTTACAGCTAAGAGTTTTTCTAGTGTAAAACCAGCTGAAAATGGGTGGCCGGGATTGCT GCACTTATAATGTAAGCTTTAATCACAATGGGAAGACAATCAAAAACAAGAAGAAAAAAATTGTCATATT CTATTTACCTCTCTAGATCCTCGTATCTTATGTGAATATTTGATATTGACAGCTTCAAGTTTCCCATGAC TGTGTCGACCAATGATCCTACCCATGATTTGTTCTTATAAGAGAACAAGAAAAATATGGTAGTTAGTTTA ATACAATATTTCTGAACACACACTATCTACTTTGATGAGTAGCACTAGCCACACCATTTCCGTATGTAGT CGACGAGCTCTTTCTACTAGTTTTGTTTCCATTTCCTGTATATTGCAAACATAAAAGTGATTCAATGACT CAAATCAGATAATGAAAACAATCATAACATGAGCGACCTATCTCACCAGTATTAGCTTTCTTTTTTTCTC TTGGATAGAATCCTCACTACATCCTTCAACATCAGTTGCGGGTTCGGCTAATAAAAAAATTCGATCAAGA TAAACCACTACAGGTTCCTGGCCAAGCCTGCTCCATGGTACCTAAAATGATTTGAAACGTATCAGTAAAT GGGTGTAACCGAGTGTAGAAAAATCTGTAAACAGGAAGGTAAAAGACCCCTGCCCAGAAAAAAAATCGAT ATCACCCGGAAAAAAATGTATGATATTGCGTCACTTACAGAGACTACAACAGCAGTTGAAATACAATTTG TGAGCAAATGTGTAGAAAAACGGGAAGAAAATGAACGCACTCAAGCAGACATACTTTAGCTTTAGATACA ACAGACAGAAGAAAAAAACACAACACACCTTGAGTTTGACTGATCCAAGAAATCCAGCTTTAACCTTGAC AGGTAATTTCAAAGCGTTAAGTGCTTCTGGTTTTAGTTGCATATTCTTCAGCTCCACATCCCCTGCGAAA TTAAGTAGAACCAAGAGCTAATTAACAAATGAGAAAACTAAAAGTCCTTCCTTTTATTCAGTCGATCTGT TCTTAGTAACAAATGGGAAAACCAACTAAGCATTTACGAAGTGAACAATCAATGTAAACGATGAAGAAAG CAAGCAAGCCGATATTCTCCATCATCTTTGAAGAGTTCCAACCAACTAAACCCCAAAAAATCACAAAATC TGAACTTTACTCCCACCCTTCTTCCAAAATCAAAGAAGACTTTGCCGTTTAGCTATACGAATATTACAGC TCTTTATCCAACTACAACACAACACAAAACCTAAATTCGCTACTGAATATCACAGAAGAAACCAATCTGA CCTTGCCAGACACTGATCTTAAGGGCTTCCTTACTCAATCCCCTGACGTAGTTCCCCAAGTACCGCTGTA ACAAGTAGGCTACTTGATCTTCCAACATCTTCGTATCCTACAAATCAAAAACTGGGAAAAACAAAATCAA GAAATCTATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTA GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTA GGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACGGCTCCGTTAAAAAGGAATAT TAAAAATATCCTCTCCGATTCTTGGCGGTGCTGCTTATCAATTGTTGCCTAAACAAGAAAATTAAAACAT TTTTAATTCCATATATGTACAAAATCTATTTGGGAAATATCTAGGATATCACTAAAATTTTTTTATCACA AATATAGACTTTAATGATCAAAATGTTTCATTCAAGAAATTATATCCTTATACCCTAAGGATTAACTAAT CCAAATTTTAAGATTTAAAATCAAAGAGTGGGATTTGGGTTTGAGATTTAAAAATTTTATAAAACAGAAA ATAAATATTAAAATTTTGAAAATAAAATTTTTTAAAATAGTTTCAAAAATTATTTTCGAATTACAAAAAA AAAATTTGCCAAAAAAAATTAAAAACAAAATTCCAAAAGACAAATTCCAAAAAAAAAAATTATAAAAAGT TCGAATTTGAAAACCTATAATCTAAAACAATAAAAAAATTTATTTTTTATTTATTTTATTTTTATATATC TAGGGTATTAGTATCCTTTTACCTATTAAATGAAACATTTTGGTCATTTTCTTCCTTGTGATCTATTTTT GTGACCAAAACTTGAAAATAGTCTATTTATGAGAATTGCCCAATATATTTTGCCATCATACATTTAAATT TACAAAAAAATATTCTGAATATTTTTTAAATATTATGAACATTAAAATTAAATTAAGAGAAATTCCATTG GATAGCCATTTTTAGTTTATTTTCACAAAATAGTCTATCAATGAGGAAAATGACCAAAATAAATTTTATT AAACGGTAAAATATGAATTTATACCCCTTGAGTTAACTAAACTTAGGATTAAGAGTTAAGGGGTGGATTT TGGGAATGCGTTTCAAATTTAAAAAAATTTAAAATTAAAATTTTCAAAACAAAAATGGGTTATTATGGTC ATTTTATTTATTTAAGGCTATTTGTGATAAAAACTTAAAAAGCCTATTTGAGAGAATTGGCCTTAAATTA ATATAAACTAGGTGTTTTATCTGTACATGCAGATATAATTCTTTTATAGATAATTATTAATAAGTGTATT ATTAGTTTATAGATCAAAAAATAAAATAAAGGGGTAAACATTATATTTATATTTTTTATGAATCTTTAAA TTTCTTAATTTAAATTTTTATTGATTTAAAACATTATTTTAGATAACAACATTAATATTTTATTTTAAAA TATGCTGTTATTTTTAACCAATTTTTATTATATTAATTTATATATAATGATCTAATTAAATAAACAAATA TATAATTGTTAATACAAAGTGATGTTGTTAAACTAAATTTTTGAAATTACCAAAACCTACAAAATTTCAA AATAAATCAAAAGCACAAAAATGTTAAACCGAACCCAATTTTACATATTATATTAATCAAAGTAAATAAA ACTATGGATATATGTATAGTTATATTGTAAAGTATCTTCCATAATAACTCAAGGGAAATTACACCCCATA TACTAGACTTTTACCATAATTAACCAAATATCATAAATCCCACAATATTATACCTTTCTCTATAGACACA AACTAGTCACATCATAGGTATTTTCAATTTTTTAGGGTTTTAAACCAATTCACCCATAACTAAATAAACA TTCAAACAGATGAATCATGTTGTCAAACAAAATATTAATATTGTATAAGACAAAAACATTTCCAATCTAT TTTTATTTTCATTTCTAAATATTATAGTAGAGAAAAATAAGATATAGTCAATCTATATTTTTTACTTTAA AGTATATATTGCTATTTCCCTATAAATTATTATTCCTCTTATTATAAAATTATAATTTGTTATTTTCAAA TGGTCTTTTAACTTTAAAACTTTGATAATTATAAATAAGACTATCATTTTAGAAAATACAGTTTTGATAA TATAAAAATCACATTTTTCTTTACTTTATAGTCTCTTAAAGAAATTTTAATCTAAAAAGTTATAATTCTC TGAAACTCTTGAAAAAAAATAAAAGTAAACAGAGTTAATTTTAAATTTTTATAAATATAAGATACTTGTT GTAATATAAAATTAATATTTTGAAAATATTCTCTTTTGGAAGCAGATATTTTGAAACTATTTAAAAAGGA TAATTACATTCCCAATTAAAAAAATATTTAGAACAACAAAAACAAATAAATATTAATTTTCAACTTAAAT AACAAATAAATGTTATTCTTGCAACTGAATAATAAGAATAAAAATAAAAATACCAAAAAATCACGTTAAC AAACAAATATAAATCAAATTTTTGTTATTGGTTACATACCTATTTTAGTGCTAAAATAAATTTCATATTT AAAAAAATATGACATGACATATTACGTCTACAAACAAATATAAATATATTTTTCTTCATAAAACTATTTT TTATTATTTTAATATAATGAAAAATCAAATTATGTGTATATATACTACCTAATTATAAAAATTAATAAAT AAGAAAGAAAGATGTATATAAACACAAAATAAATACATGGAATTATCTTTTCTTTTTCCAAACATGTTCT CCATTTATTTTCTGAGATAATTTTTATAATATTAATTTGTAATCAGTTAAATAATGAATTATATAGTTAT GTATTAAAACTTTAATCAGTCTAATTAAAATGTATTATTAAAACTAATGGCTCAGATTAAAATCAAGGAG TACATGACAAATAAACAAAAAGCAAATTCACTTCTCAAATAATAGTATAGATTATAAAAATAATATTTTG ATGAATTTTCAATCAATAATTTTATGTGTGTCACAAAAATTAAAAATACATATCCGATATTTTTATTCAT ATGATGTTAAAAGTTATAAAACTTTTTCATTAATCCATGTGTGGAGAGTAAAGAGTTACTTCACAGTTTT CCAGTATATTAAGCTAAGTAAAATGATCAAACTGTAAGTTTTCATTCTTCGAAATTGTATCTTCCATTAT GATTATATAATACATTTATATAAAAATTCTTTTAATCAACAAAATAAATGTTTTACACCCAAAAAAAAAA ATGTTAGACGGAAAAAATATATGATTCGAATTTCAAATTACTTTATATAGACTAACTTTTAATAACTATC AAATTTCTAAGCTAAAATTATTTTCAAATTATTTTTAACTTTATCATGTTATTTTATTATATCTGAACCC AAACAAAATAAAATATGCTTATGGTTCAGACCAAGACTGAAAATCATAGTCCATAAGTCAATGCCTTATA TTAACGTTGAAGAGGAAACGCACACATTTGCACGTGTATAACTGCACGCTGTAACGCTTCAGATCCAATT GTTGTGGGCCTGTGTACAGTGTGGTTTCATTAACTTGTTCTTGGGTACATGCCACATGGTACATTCTGTT TTTTTTTTTTTTTTTTTTTTTTTTATAATAAGTACTTATATTATAAAATCTGCCCGAAGAATCGGGAATC AGATACGGTTACAAGCTTGTTTTGAACAAAATGTCAAAATCTAACTATTACAAGCCTAGCTTCGCCCACC CACTAAACCCGGCACGTTCCGCTAAGTTGTTTTTCGAAGTCATTCGATATCGGTAGCCGTTCTTGATGTT AGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATC AAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATG ACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGG GATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGC CTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCAAA TGTCTTTGGTTGAATAATATGAAAGCAATCATTACTAACAAGTCTATTAGCTATCTTAGCACCTTTAACA ACAAATGTCTTTGGCAAAGTATACTAAAAGCCTAGGAGAGTTGTCTCGAGCATTTCATCGAACACCTTTC GGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATGATTACTCTACTAG CAAGGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCCTTAAAAAAAACCTCCCTAGCTC CTTAACTAAATCACCCCTTAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGA TTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACAC AAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCC AAAAGATCCAAGATCATCTGCCTCTGGTGGCTACAAAAGATGTTTAAAACATAGGTTTTTCCAAGTGCAA AACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCG ACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAG CGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCCAGGCTTC GCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA GTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGAC TTGGTGGTGTCGCTCCGGACTGGTCACTCCATGCCTTGCTCGCCCAATGACCACTCTAAACACTCCTTTT TTAGCTCCAAATGCATCCAAATGTCTCCAGAAACTCCATGTGGTACTCAAATACCTGATAGAGACATATG TATGCAAAATGCAACCTAAACATGTCTAAATCCTAATCTATATGATGAAAATGTTTATGAATGAATGGAT AAAACAATGTAAATATGCAAGATATCAGTTCTCAACCATCAACATAATTCTCGGGAATGTGAGGTTCTCC TTGTTTCCTTGGATGCCGGGAGTTCCCTTAACGTTTCCGGAGTAGCTAGTTTCCGATGATCTCCACAAAG CTCATAACTTTCTCTGTCAATGAAGCTCAAGACAGCCAAAGGGGAGAGTTCAAGTACATACCAATGCCTT GCTAATGCCACCAAAGCCGGGATGAATGAAGCGCCACACGACGCCTGAACCGATTCCCAAAACGAGTAAG CACTCGCTTCAGCCATCAACGAAACCTGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAG TCCCTAAAACCTGCAAGAAAGTCAGCTACACCACCATAGAACACTACGGCGCCGGGATGTGAGCATTGAC GAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGCATCCATGGCCTTTGAGAACCAA AGGACCAATTCCTTGACTGCTAACACTTCATCCCTTGAGCCAAAGGAATGATACAACAATTAAGTCCAAG AGACTTAAACTCCTCAAGAGAAGCCGTCGCTAAACTCCCGGAGAAAAAACTAAACAGGACACCGGGAATG AGAGTTCCGAAAGAGTTGTGGTGCGTCTTGAAACCTCCTTATGGCCATAGACGACCCATCAAAACGTAAC CAGAAACACACACACGAGGAATCAAGCAGGACACTTTCACCACGATTACATCCGCTGTCAACCTAGCCTC CAACACCAATACAGTACCGGAGCACTCTTGATAACGGCGAATGGGTACCAGAATCTCTTCGACCCGAAGA AACCCTAAGCAACCACCACCATTACCGAACAAGCACGGGACACAGGATCTACAGCAGCGAACCACCACGA GCCCAGCCGTGACAAGACCCAGCGCTGTCACTCCACGACGACAAACACCGGAGAGATCCGAAGAGAGAAA AATGAATCACTCCAAAACCCAAAAAAACCGACTCTAAACCGCTCAGCCTCGCTGTACTCTCGCCGCAGGT CCGGAGAAGGAACCACCTCGACCAGAATCAGCTCCTCGCGACTGAAGCTTCCGCCAGTCTCTGCGAGCTC CATCCTAGAAACGCGAGCATATCGAGCAAAGGATGACAGATGCGATCGAGAGCAAAGGTGAAAACAAGGA AAGGGGAGAAGAGACCCCTCCGGCCCCGGCACTCGCGCGGACGCGCCGGCCGTACGCCGGAGGGTGAGAT GCACGCGTCTGTGTTGTTGTTTGTCGAGAGAGAGTTTGTCGGTAGAGGAGAGAGAGTTCCAACTAATTCT GATATCAGATCACATTCTGTTTTTTTTTGTCATAAGGAGTTTTAATTTCACTAGTAATTTGGATTAGTTT TGCATTTGTTCAAATTGGAATATACCTTTTTGTTTAAAATCAAGTTATGAATCATATTTGACAATTTCCT TAAAAAAGTTAGGTACAAAGGAATGTTTATGTTTCAATAAGAGATGTGAAACTTGCATTCTTTATTTATC CCAACATAAATCACTTAACTTTTGTCACATTTTCTAACGAGCATTGTAGTTTAAACTCTTTTGTGTTTCA AAAAACAAAACAAAAAAACAAAAACTCTTTGTACTATCTTAGTTTTAGTATACACTAACTAAGTGGTTCT TACATGTTGGATAAATATACTTGTTGAAGTACAAGAGTGTCTTTCTAACTCCATGATATGAAACTACAAA TACTCCACATATGACAGATGTGTGTGCAATGTTTTGCTCTTTAGGAAGAGAGTTTTCAAAAGTATGATCC CACTTAGCTGATTTTAGACTTAGCTCAAAGACTATTAACGTTCTTGGTTGTTTTCCTTAGTTTTTTTTTT AGGTTTAGAGTTTGCTATGGCTGATTACAAATTACTTTGCAAGCTCACTTCCTATTTTCATTCTTTTTAT TAGTCTGGTTTGCAGTAGATTTTTCCGTTTGATTTATCTTCAAAATCTTGTTTTTATACACTGCAAATCT TACATATGCATCGTTCTCTTCATCTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGATCT TTTTTTCAAATCATATATAATCTGATATTCGTTCCACTATAACATGAAGGATATTAATGACGTATGCAAC CTCTCTTGCACCAATATCAGCTTCACATGTCATAACTTCGGTATATCTTCGAGTCGGAACCACTATGCCA TCATTTTGTCTAAGTTGGTGATTTAACAGTGTTACTAGATCTTGACACGCGCAACCATGCGCGTTTTATT GTAAGTTTTATATGCATATATATATTTACTTTAGATAATTAGTGGTATACATTTTCAATTTTAATCATAT ACTTAAATGTTTTTATAACTATTTCAAATACAATAATTTATAGTTTACATGTTGTAAATAATTGATTGTT TAAAATCTTCACATGTATTTGTTGTTTTTATTATATATTTACCGTATTGTATTTGCATTTAATTATTAAA CAAAATAATATGTGCATGAAAAAAATCATCTTTGAAAATTATTTTGTATTTAATTTATGTTTTATTTTTA CCCCCCCCCCCCTCGAAATGGATTTCTTTTTTTGCAATATTTCTTACGTTTATTCATTTTACATAATATA TTATTGTATATACAAAAATCTAAGATATGTTAATTTTTAATCATGTATTATATAGTATGCTAATGTTAAG ACGTTATGTCATCATATTAGATTTTTAACATAAATATGAAAATAAAATTTATCAATTTAATATAATTTAT GATATTTAGTTCAATATAATAATTTAACATGATTGATTATGATTATAAAATAGATAAAGTAAGACATAAT TTCTATCTTTAATTTTATAAACAATAACTGAATATATATATATATTAATGCATAATAATAGTTCATTGCT AATTACGAAATTAGTGAAAATATTTATATAAACTTTTTGAAAATTAAGATATTGTTAAAATATTCAGATC AACATAATAAATTTTTTTAATATGATTGATTGTGATGATATAATAGATAAAAATATGATAAAATATTTAT TTTTCATTTTATAAACGATAACTGAATATATTAATGTATAATAATTTTGAAAATTAAGATTTTTTAAAAA TATTTTTAAACAGACTTTCAAAAATTTAATATATATATATATATGTATATATATATATTAAATGAAAAGA TATCAACAGATATTATGATTAAATTAGTTCAAAAATTTTATATATTATTAGTCCTATTAAAATACATATA ATCTGTTTTAAAAGATTAATTTTTTAACAAAATAAATTCTGAACGAAAAATATCATGGATAAATGTAGTT GCCGAAGTACAAGAGTGTCTTTCAACTCCATGATAGGGAACTACAAATACTCCACATATGACAGGTATGT GTGCAATGTTTCCTCTTTAGGAAGAGAGTTTTCTAGGATATGATTCCACTTTATAGCTGATTTTAGACTT AGCTCAAAGACTATTAATGTTCTTGGATGCTCGCCTTAGTCTTTTTAGGTTCAGAGTTTGTTGTGGCTGA TTACTAATTACTTTGCAAGTTTACTTCCTACTTGCATTCTTTTTATTAGTCTGGTTTGCAGTAGATTTTT TTCGTTTGATTTATCTTCAAAATCTTCTTTTTATACACTGCAAATCTTACATATACATCGTTCTCTTCGT CTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGAAATTTTTTAAAAATCATATATAATCC AATATCCGTTCCTCTATAACATGAAGGATATTAATGACGTATGCAGTCTCTCGTGCACCAATATCAGCTT CACATGTCATAACTTCGGTATATCTTCGAGTGGAACCACATGCCATCATTTTGTCTAAGTTGGTGATTTA ACAGTGTTATCCTTAAGAGTTAAAATGACAAGTTGTGTAAAAGAGGTGTGGATTTGCCAAATTATATAAT ACAATTCTACGGTTTTAGAATAAACTCGTTTAGTGAAATAATAATAATAATAATAATAATATTTTTTTAT GATCTAGTCTTATGTATTTGATCGCATACACAAAAACATAAAATTGTTTATAAGCTATTCGAATAAATTT TGATGTTTTTATATTTTTATATTCTCATTTCGGCAGATTTTTGGAGCAATCACAATTTCCTTCCTCTGAG ATAGGATAAATTTTAAAGTTCTGGCCGACTTAACAATGAACACATGATAAACACAAACAAATCAGATTCG AAGTTACGAGTGTACTTTGTGGTCTTTGAAGTGGTATCTACTTTCAGCAAATTCCTGGAGCAATATCTTT TAATGTTTTGGCTATCTAAACAATGAACACAATCCAATTTGAAAATTATCATTAGGCTTTTTTCGTGCTT GAATCTCAGCTTCTGTTTTTTTTCTCAGATCACTCAATGGCTAAAGATAGTTCACAAAAAATTGTGAGGG TATTTCGATTTAAAATTAGCTACGGCTGGTAAGAGATGACTGAGTTGGGCTGCATTTACCAAAGTCAAGA ACAAATCCATTGTGATTCTCATGCGGAGGTAGTCAGAGATAGTGCTCAAGAATGCACAACTTATCTGCCA AAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATT TTTGTTATAACTAAAAATGAAATTCAAATTTATAATTAAAATTGATTTGATATTAATATCTTTTTGATTA TTAATATTTTTTAAAATGTTATATATTTGATTGATTAATTTAAATAATCAAATATGTCATATTAATTAAT TAAATAGTTCTACTATGACTTGTCAACAATAGATAAAAATAGAAATTCTATTTAAGTGAAATAATAATAA TAATTTCTTTCATTTATGACTTATCAACAATAGATAAAAGGGCAATTCTCTCAAATAGATTTTTTTTTTT AATTTGTCACAAAAATAGACCCCAAAAACTAAAATGACAAAAATAGAATTTTTTATTTTAAAAATTTAAT TTTTTTTAATTTTTAAAATTTGAAATCTTATCCCCAAAACCCCACTCCTCAACTCTAAACTCTAAACCCT AAATCTTAAACCCTAAACTCCACTCCTTTACTTTAAACCCTAATGTCTAGATTAATTAACCCTAAGAGTA TAAGTGTATATTTACTTCTTTTGATAAAACATTTATAATTAATTAATTAATTAAATAGTAGATTCTTTAG AATTAAAATGACAAGGTGTAGAAAAAGGTAGAATCGCCAAGTTATATACTAATTCTATGTTTTTTTAGAA TAAACTCGTTTAGTGAAATAATAATAATAATTTCTTTCATTTATGATCCAGTCTTGTGTTTTGAGCGCAT ACACAAAAACAAAAAAATTGCTCATGAACTACTCAAATAGATTTTGATGTCTTTTTTTTTTTTTTTGCTA AATAGATTTTGATGTTTTTATATTTTTATATTCTTTTATAAATGCTCTGACGCATAAATCCGGTGTTCAT GAGTTTAGTTTAGGGCCAGCTGATTTTATCTGCAAGAAGAATTATTTTGGAGCTATATATTTGGTAACTG TGAAATACGATTTAGATGGTTATCTCACAACTCAAATATAACAAATTTGACCTACCATCTAGATGATTAT TACATGATGCTTAAAATGAAGTATATTTGATTGTTAGACGTCACATTAATATCACCCCTAAACTTTAAAA AGATTAGATACTTTCTTAATTTGATTAACATTTACAGAGCAAGAGACATGTCCATATATCACTGTCACTT AGTGAGCTGGAGAGGAAAGGAGCAGCAACCTGACGAGGACTTTTCCTAAACACATAATCTAAGCTTTACA GATCCACACATCACTCATGATGAGCTGGAGACGAAAGGCACGCATTAGTGGCAGTGACCAGAAGGACCCG TGTTCGAACTCCCTCAAAATAAACATCGTTTCTTTGTTACTTTCTCGACAACATCTCGAGATCTGAAACC TGATCCCTACCTTTTTCATTTCCCCTTCTCAAAAGTCGCGGCCTTTGAATAGTGTTCCTCTCTCATCAAA TCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAGCTTTCTT CTTTCTTTCTTTTTTTAATCCCTTCCAGCTAGTAATACCGTAGTAGGTAACTTTTGGGTGGTCTTACTTG CTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCTCAGAAGCTTATATG GGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCTCTTGCTGAAGACGAAGCAATG TGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGTACTTGGAGGACTCAAGA TGATTGACCAGTTCATCAACTTTGTTATTCGCCCTCCCAGGTACCTTTTGCTTCTCTAAAGTCTCAACCT TTTCTTGCATTCAACTGATTGGTAGCTGTTGGAACAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGA GAAGGACTTTAGCATCGGTGGCACAAAGTGTAAAAGGCAAGACTTGGAGGCAAGTATGATGTGCAAAACC AGTTACTGTTCTCTTCAATTAGTGGTTTCCTCATGTGGCTAATCTTAAAGGTCTTATGTTTTTTCTCTGA AGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAA TACTACTCCTCTTCCTTGCGTTATATACTGCCATGGTAATAGGTACATAACTAAAGACTTTGCACACTCC TCTTCTTGGGAATGAATATTTGATGAATAAGAACTTCCATTTGATCAGTGGATGTAGGGCAGATGCAAAT GAGGCAGCAATGGTTCTTCTTCCATCTAACATTACTGTTTTCACACTTGACTTCTCCGGTTCTGGCTTAT CTGATGGTGATTATGTTAGCCTTGGCTGGCATGAGGTGTGTTTTCCTTGTTCTTACTTACTTCCATAGCC TTCTCTTTCTCTTCCAAATAGTTACACTAACCTTTTGCCTGTTAAACTTAAGCTAGAAAGATGATCTCAA GACTGTGGTTTCTTACCTGAGAAGCAGCAATCAGGTGTCTCGTATTGGACTTTGGGGACGGTCTATGGGT GCAGTTACCAGGTTACTTCTTGAACTAGCTCTTAATGTCTCATCAGCTTTCTTAATGTCTGTGATCTGGA ATGTGTTCCTTGTGTGGCTCTCTTCATCATTTAATGAAGTTGTTAATGAAATGTGCAGCCTTCTCTATGG AGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACAGTGCATTCTCAAACTTATTTGATCTTATGATG GAACTAGTGGATGTTTACAAGATCAGACTTCCTAAATTCACAGTATGCTCTCTTTTTCCCCCAAGTCATA TTCTTCATTGCTTATATCTTCACATGGCTACAAGAGTCCAAGAAGATAGTTCCCTCTCTTATCCCTTCCA ATGATGATAGCATACTGTAGACATTCTGAAACTCTTATCTCACTTTTCAATCAGGTTAAAGTGGCTGTAC AGTACATGCGGCGAGTAATTCAGAAAAAGGCCAAGTTTAATATCATGGATCTCAATTGTCTCAAGGTGTT ATTTAGTTACCTCTTTCTATATTCTTATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATT TCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGCGGAGACAAATTC ATCCAACCTCATCACTCTGACCACATTCTCAAGTGCTATGCGGTTAGATCAAAGTTGCTATCTTTTTTGC ATTCATGTCAGTGTTGTTTTTAATGTTATGTAGTAATCTTATAATGCAGGGAGACAAAAACATCATCAAG TTTGATGGTGATCACAACTCCTCACGGCCGCAGTTTTATTATGATTCAGTGTTAATATTCTTCTACAATG TTCTACGCCCGCCTCAAGTTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATAGCGCTGCTGGTTTGGA CGAGGTAGTTTGCACTCCTCCTCTGGATCAAGCAATCCAAATATCATGTCTGTTTATATGTCTACACTTA GATAGTATATAAACATAAAGATCTTGCCTAGACATTCTACTCGAGTCACTTACAAGGTAGCTCAAAATAG ATGAGGGTTAAGAACTTGTGGTCACACAGCATTATGGATTAATCTCAATTACAGTTAGCATGGTGAAATA TGATGCACATGAATCTAACTGCTTGGTTTTTCCTTGTACTGCCAGAATTTTCTGTATGAGATCATCTCTG GGCTTCGTTCGGCATGTATCGATGTTGCAAGTTCTTCTTCTTCTGCACCTCCTGCCTCTCTAACAACAAA GCCAACAAATGAGCTCATCTCAGAAGCCATGCCCATTATGGATACTGTATATTTTCTGTTGCATGAATTT TTATTTTCTTTTGCTTTGATTATTCCTTTTGATAAATCAAATCATTAATGAAACAGGATGACTTGCTTGT AGCAGACAATGATCAGAACATTGATGAACCTGAGGTAACTGGAGCATGTGGAAACACACAATTAATATAT ATATATATATATGATGACTTAGAGCTCCTTTTAAATGGAGTCCCTCAAGTGTTAGCCTTTATGAACCTTG CTGACATTATAGGTTTTGACTGTTGTTATTTGGCAGGGGATGCCTATTGATCAGTTTGAAGAAGGATGTT CATTCACAAGCTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAG CTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCT GATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAACACAGAACAGAAGCCAATAGAGTCCACTAGA CAACAAGAAGAAGAAGAAAAAGAAGAGAGGAAGGAGAAGAAAATGAAGAAAGGAGTTGAAACAGATGCAA AGAAGCCTAAACGAGAGAAACTGGAAAGGTTAGAGGCTTTCAGCAAAAGACTCAGGCTTGGCATCATAAA GCGAGTAAACCATGGAAGACACCGTTCTTCGCAACCTTAACAACAAAGTTCAACAAAATACTCTAAATTT GTTATATATGTTCTCTGCATCTTGCCATGTACACATGCAGCAAATCAAATATGTACTACCGTATCGATTG TCATTGCAAATGGACTACATTCCTAATCATATCCTTAGATAATCAAACACACTTCTTTTAGATAAATTAA TAATCCGTCCCGAGCTTCACCAGAACACAAGTCACCAAATCGAAAATAAAATGGATTTACAACAGTAGAA AAAAGAATCACAGAAGTTTTTGTTCACATCATTATGTGATGATTGTTTTATACGTGATGATATAGACACA CCATTATTAATAGATTAGCCGCAGCAACCTCCTTGCGGTGT From adsj at novozymes.com Tue Jun 1 09:42:02 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Tue, 01 Jun 2010 15:42:02 +0200 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: (Chris Fields's message of "Wed, 26 May 2010 06:53:50 -0500") References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> Message-ID: <87eigqj2dx.fsf@topper.koldfront.dk> Ok, so coming back to the reason for the changes in my fork?. It has been a while (the test in the application I am working on is from August 2007, so I have been using/carrying the patch for three years?), so I have to dig a little before it comes back to me. Basically, I would like to make a class that inherits from Bio::Seq::RichSeq and extends it. When I call ->seq on features on my modules, I'd like to get an object of my own type back. That sounds a little convoluted, so let me illustrate my thinking with a self-contained script you can run: = = = #!/usr/bin/perl use strict; use warnings; use Bio::SeqFeature::Generic; my $seq=MySeq->new(-seq=>'actg'); $seq->extra_method; print "len: " . length($seq->seq) . "\n"; my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); $new_feature->add_tag_value(note=>'test'); $seq->add_SeqFeature($new_feature); foreach my $feature ($seq->get_SeqFeatures) { my $obj=$feature->seq; print ref($obj) . "len: " . length($obj->seq); print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; $obj->extra_method; } exit 0; package MySeq; use base qw(Bio::Seq::RichSeq); sub extra_accessor { # ... } sub extra_method { # ... print "extra_method called\n"; } # ... 1; = = = The output I expect (what my changes give rise to) is: extra_method called len: 4 MySeqlen: 2 OK extra_method called But the output I get is: extra_method called len: 4 Bio::PrimarySeqlen: 2 FAIL Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. That is what the changes on my fork try to address. If there is a better way to accomplish the same result, I'd be flowing over with joy :-) Best regards, Adam ? http://github.com/adsj/bioperl-live - this commit in particular: - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 ? There actually was a little discussion about this, way back, on this list: * Thread start, Oct 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 * Patch as per suggestions from Hilmar Lapp, Nov 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 -- Adam Sj?gren adsj at novozymes.com From maj at fortinbras.us Tue Jun 1 12:36:00 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Tue, 1 Jun 2010 12:36:00 -0400 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation In-Reply-To: <1275379428.24468.20.camel@lafs-746g12s> References: <1275379428.24468.20.camel@lafs-746g12s> Message-ID: <3666E24BF5BC4A17935800B99A2C1C4A@NewLife> Thanks Jiri, I've created a bug report and assigned it to myself. See http://bugzilla.open-bio.org/show_bug.cgi?id=3088 cheers, Mark ----- Original Message ----- From: "Jiri Stiller" To: Sent: Tuesday, June 01, 2010 4:03 AM Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation > Hi, > I am trying to process bam file using Bio::Assembly::IO. I attached test > script and output. > When I am retrieving contigs I get correct contig number and position > but contig objects build from reads of different orientation don't > contain any read sequences. Contigs built from the reads of the same > orientations are fine. > > Your help/advice would be greatly appreciated. > > Cheers, > > -- > Jiri Stiller > Senior Bioinformatics Researcher > Australian Centre for Plant Functional Genomics > School of Land, Crop and Food Sciences > University of Queensland > Brisbane QLD 4072 > > j.stiller at uq.edu.au > Phone: +61 (0)7 3346 7082 > Mobile: +61 (0) 422 941 581 > Fax: +61 (0)7 3365 1177 > > > -------------------------------------------------------------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Tue Jun 1 13:38:46 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 12:38:46 -0500 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: <87eigqj2dx.fsf@topper.koldfront.dk> References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> <87eigqj2dx.fsf@topper.koldfront.dk> Message-ID: <17457107-2C9F-4F07-9BD5-EEA17F2F4901@illinois.edu> On Jun 1, 2010, at 8:42 AM, Adam Sj?gren wrote: > Ok, so coming back to the reason for the changes in my fork?. > > It has been a while (the test in the application I am working on is from > August 2007, so I have been using/carrying the patch for three years?), > so I have to dig a little before it comes back to me. > > Basically, I would like to make a class that inherits from > Bio::Seq::RichSeq and extends it. When I call ->seq on features on my > modules, I'd like to get an object of my own type back. > > That sounds a little convoluted, so let me illustrate my thinking with a > self-contained script you can run: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use Bio::SeqFeature::Generic; > > my $seq=MySeq->new(-seq=>'actg'); > $seq->extra_method; > print "len: " . length($seq->seq) . "\n"; > > my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); > $new_feature->add_tag_value(note=>'test'); > $seq->add_SeqFeature($new_feature); > > foreach my $feature ($seq->get_SeqFeatures) { > my $obj=$feature->seq; > print ref($obj) . "len: " . length($obj->seq); > print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; > $obj->extra_method; > } > > exit 0; > > package MySeq; > > use base qw(Bio::Seq::RichSeq); > > sub extra_accessor { > # ... > } > > sub extra_method { > # ... > print "extra_method called\n"; > } > > # ... > > 1; > = = = > > The output I expect (what my changes give rise to) is: > > extra_method called > len: 4 > MySeqlen: 2 OK > extra_method called > > But the output I get is: > > extra_method called > len: 4 > Bio::PrimarySeqlen: 2 FAIL > Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. > > That is what the changes on my fork try to address. > > If there is a better way to accomplish the same result, I'd be flowing > over with joy :-) > > > Best regards, > > Adam > > > ? http://github.com/adsj/bioperl-live - this commit in particular: > - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 > > ? There actually was a little discussion about this, way back, on this > list: > > * Thread start, Oct 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 > * Patch as per suggestions from Hilmar Lapp, Nov 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 > > -- > Adam Sj?gren > adsj at novozymes.com This is where some of the confusion lies: Bio::Seq is both a Bio::SeqI and a Bio::PrimarySeqI. This inheritance just indicates Bio::Seq fulfills both interface methods, but note that the way this is done (regarding PrimarySeqI) is the methods delegate to a PrimarySeqI (normally a simple Bio::PrimarySeq) contained within Bio::Seq. A Bio::Seq's contained SeqFeatures are attached to this, not to the Bio::Seq itself, for a very good reason: no circular references (so no need for Scalar::Util::weaken). If you are subclassing MySeq from Bio::Seq (or RichSeq in this case), maybe the way to go is to subclass a similar MyPrimarySeq class that does what you need, bless any data from the MySeq constructor into the new MyPrimarySeq, then add methods that delegate to that within MySeq. Does that make sense? chris From robfsouza at gmail.com Tue Jun 1 16:23:41 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 16:23:41 -0400 Subject: [Bioperl-l] blastxml to table Message-ID: Hello! I'm trying to convert BLAST XML output to a BLAST table which should be identical to a BLAST output generated using "-m 8". In the script below, if $type is "BLAST", the script works if $writer is TextResultWriter but when I try to generate BLAST compatible (i.e. like "-m 8") tables using $writer = "HSPTableWriter" it fails with the message Using default column map. ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't locate object method "iteration" via package "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. STACK: Error::throw STACK: Bio::Root::Root::throw /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 STACK: try{} block /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 STACK: Bio::SearchIO::write_result /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 ----------------------------------------------------------- Is there a way to fix this? Or should I use another approach to get "-m 8" compatible tables? Thanks, Robson #!/usr/bin/env perl #==================== use strict; use warnings; use Bio::SearchIO; use Getopt::Long; my $writer = "TextResultWriter"; my $type = "PSIBLAST"; GetOptions("w=s"=>\$writer, "t=s" => \$type); # Load writer use Module::Load; my $writer = "Bio::SearchIO::Writer::".$writer; load $writer; $writer = $writer->new(); # Open and convert input my $out = Bio::SearchIO->new(-writer => $writer); foreach my $file (@ARGV) { my $in = Bio::SearchIO->new(-format => "blastxml", -file => "<$file"); $in->blasttype($type); while( my $r = $in->next_result) { $out->write_result($r); } } exit 0; From cjfields at illinois.edu Tue Jun 1 17:47:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 16:47:48 -0500 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. Can you report this? I can't get to it (going out of town until Friday). chris On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > Hello! > > I'm trying to convert BLAST XML output to a BLAST table which should > be identical to a BLAST output generated using "-m 8". > In the script below, if $type is "BLAST", the script works if $writer > is TextResultWriter but when I try to generate BLAST compatible (i.e. > like "-m 8") tables using $writer = "HSPTableWriter" it fails with the > message > > Using default column map. > > ------------- EXCEPTION: Bio::Root::Exception ------------- > MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't > locate object method "iteration" via package > "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. > > STACK: Error::throw > STACK: Bio::Root::Root::throw > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 > STACK: try{} block > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 > STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 > STACK: Bio::SearchIO::write_result > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 > STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 > ----------------------------------------------------------- > > Is there a way to fix this? Or should I use another approach to get > "-m 8" compatible tables? > Thanks, > Robson > > #!/usr/bin/env perl > #==================== > > use strict; > use warnings; > use Bio::SearchIO; > use Getopt::Long; > > my $writer = "TextResultWriter"; > my $type = "PSIBLAST"; > GetOptions("w=s"=>\$writer, > "t=s" => \$type); > > # Load writer > use Module::Load; > my $writer = "Bio::SearchIO::Writer::".$writer; > load $writer; > $writer = $writer->new(); > > # Open and convert input > my $out = Bio::SearchIO->new(-writer => $writer); > foreach my $file (@ARGV) { > my $in = Bio::SearchIO->new(-format => "blastxml", > -file => "<$file"); > $in->blasttype($type); > while( my $r = $in->next_result) { > $out->write_result($r); > } > } > > exit 0; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From robfsouza at gmail.com Tue Jun 1 19:16:04 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 19:16:04 -0400 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: Hi Chris, just submitted the problem to Bugzilla (Bug 3089). Robson On Tue, Jun 1, 2010 at 5:47 PM, Chris Fields wrote: > That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. ?Can you report this? ?I can't get to it (going out of town until Friday). > > chris > > On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > >> Hello! >> >> I'm trying to convert BLAST XML output to a BLAST table which should >> be identical to a BLAST output generated using "-m 8". >> In the script below, if $type is "BLAST", the script works if $writer >> is TextResultWriter but when I try to generate BLAST compatible (i.e. >> like "-m 8") tables using $writer = "HSPTableWriter" it fails with the >> message >> >> Using default column map. >> >> ------------- EXCEPTION: Bio::Root::Exception ------------- >> MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't >> locate object method "iteration" via package >> "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. >> >> STACK: Error::throw >> STACK: Bio::Root::Root::throw >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 >> STACK: try{} block >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 >> STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 >> STACK: Bio::SearchIO::write_result >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 >> STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 >> ----------------------------------------------------------- >> >> Is there a way to fix this? Or should I use another approach to get >> "-m 8" compatible tables? >> Thanks, >> Robson >> >> #!/usr/bin/env perl >> #==================== >> >> use strict; >> use warnings; >> use Bio::SearchIO; >> use Getopt::Long; >> >> my $writer = "TextResultWriter"; >> my $type = "PSIBLAST"; >> GetOptions("w=s"=>\$writer, >> ? ? ? ? ? ? ? ? "t=s" => \$type); >> >> # Load writer >> use Module::Load; >> my $writer = "Bio::SearchIO::Writer::".$writer; >> load $writer; >> $writer = $writer->new(); >> >> # Open and convert input >> my $out = Bio::SearchIO->new(-writer => $writer); >> foreach my $file (@ARGV) { >> ? my $in = Bio::SearchIO->new(-format => "blastxml", >> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -file ? => "<$file"); >> ? $in->blasttype($type); >> ? while( my $r = $in->next_result) { >> ? ? ? $out->write_result($r); >> ? } >> } >> >> exit 0; >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From dimitark at bii.a-star.edu.sg Wed Jun 2 00:34:22 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Wed, 02 Jun 2010 12:34:22 +0800 Subject: [Bioperl-l] general perl question Message-ID: <4C05DF4E.2090507@bii.a-star.edu.sg> Hi guys, firstly i am sorry ive sent this email first to the wrong email(bioperl-l-request at lists.open-bio.org). Secondly, i am sorry to bother you with such problem but i do not know how to google that one :) Here is the problem. I want to start several simultaneous processes through my script but i found i cant do that unless i start them as background processes because otherwise 'system' waits for the process to exit. Now i use something like this: my @args=("$program $seqinput $$specname $eval &"); system(@args) == 0 or die "system @args failed: $!"; But that is a bit weird when i want to terminate the program then all the processes are still running and i have to kill them manually. Is there a way to start several simultaneous processes without '&'? Thank you for your patience and help Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Wed Jun 2 01:00:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 2 Jun 2010 17:00:33 +1200 Subject: [Bioperl-l] general perl question In-Reply-To: <4C05DF4E.2090507@bii.a-star.edu.sg> References: <4C05DF4E.2090507@bii.a-star.edu.sg> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B66A8@exchsth.agresearch.co.nz> It's not really a BioPerl question, more one of reading the Perl documentation. There's several ways of executing commands from Perl: * The exec() function executes a system command and never returns * system() exactly the same thing as exec(), except that a fork is done first, and the parent process waits for the child process to exit * backticks Eg. $date=`/usr/bin/date`; * open() and parse Eg. open PS, "/usr/bin/ps -ef |"; Up to you which you use, --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dimitar Kenanov > Sent: Wednesday, 2 June 2010 4:34 p.m. > To: 'bioperl-l at bioperl.org' > Subject: [Bioperl-l] general perl question > > Hi guys, > firstly i am sorry ive sent this email first to the wrong > email(bioperl-l-request at lists.open-bio.org). > > Secondly, i am sorry to bother you with such problem but i do not know > how to google that one :) > Here is the problem. I want to start several simultaneous processes > through my script but i found i cant do that unless i start them as > background processes because otherwise 'system' waits for the process to > exit. Now i use something like this: > > my @args=("$program $seqinput $$specname $eval &"); > system(@args) == 0 or die "system @args failed: $!"; > > But that is a bit weird when i want to terminate the program then all > the processes are still running and i have to kill them manually. > > Is there a way to start several simultaneous processes without '&'? > > Thank you for your patience and help > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From staffa at niehs.nih.gov Wed Jun 2 16:32:59 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Wed, 2 Jun 2010 16:32:59 -0400 Subject: [Bioperl-l] rebase file withrefm Message-ID: Could someone please tell me where in a normal bioperl installation the rebase file withrefm downlaoded from NEB goes. Thank You Nick Staffa Telephone: 919-316-4569 (NIEHS: 6-4569) Scientific Computing Support Group NIEHS Enterprise-Wide Information Technology Support Contract National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park, North Carolina From pengyu.ut at gmail.com Wed Jun 2 17:35:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 2 Jun 2010 16:35:13 -0500 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? Message-ID: Hi, I'm interested in query some keywords and retrieve the results automatically. For example, I go to the above webpage and query BIC. Then I get 1167 results. http://www.ncbi.nlm.nih.gov/sites/entrez I'm wondering if there is any tool in bioperl to help me retrieve query results. In particular, I also want to retrieve the MeSH terms, links to the papers, paper titles and abstracts. Would you please point me what tool I should use? -- Regards, Peng From florent.angly at gmail.com Wed Jun 2 19:27:58 2010 From: florent.angly at gmail.com (Florent Angly) Date: Thu, 03 Jun 2010 09:27:58 +1000 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? In-Reply-To: References: Message-ID: <4C06E8FE.30106@gmail.com> Hi Peng, I think you could do all of this with Bio::DB::EUtilities See http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook Florent On 03/06/10 07:35, Peng Yu wrote: > Hi, > > I'm interested in query some keywords and retrieve the results automatically. > > For example, I go to the above webpage and query BIC. Then I get 1167 > results. > > http://www.ncbi.nlm.nih.gov/sites/entrez > > I'm wondering if there is any tool in bioperl to help me retrieve > query results. In particular, I also want to retrieve the MeSH terms, > links > to the papers, paper titles and abstracts. Would you please point me > what tool I should use? > > From dimitark at bii.a-star.edu.sg Wed Jun 2 23:15:36 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Thu, 03 Jun 2010 11:15:36 +0800 Subject: [Bioperl-l] BlastPlusMethods Message-ID: <4C071E58.3070008@bii.a-star.edu.sg> Hi guys, i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize the psiblast(and most probably rps and rpst) result and therefore doesnt parse it. The problem was in the 'run' method where the match doesnt match properly: ------ m/^[t]?blast[npx]/ && do { ------- So i modified it pretty ugly into the following but now it works for me: ------ m/^(t|psi|rps|rpst)?blast[npx]?/ && do { ------ I dont know if it may be more beautiful but i suppose it could :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From maj at fortinbras.us Thu Jun 3 12:29:31 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Thu, 3 Jun 2010 12:29:31 -0400 Subject: [Bioperl-l] BlastPlusMethods In-Reply-To: <4C071E58.3070008@bii.a-star.edu.sg> References: <4C071E58.3070008@bii.a-star.edu.sg> Message-ID: Hey Dimitar, Beauty is in the eye of the beholder. Looks beautiful (since it works) to me. Can you do a git pull request on this? The guys who understand those things can then pull it in-- Thanks Mark ----- Original Message ----- From: "Dimitar Kenanov" To: Sent: Wednesday, June 02, 2010 11:15 PM Subject: [Bioperl-l] BlastPlusMethods > Hi guys, > i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize > the psiblast(and most probably rps and rpst) result and therefore doesnt parse > it. The problem was in the 'run' method where the match doesnt match properly: > ------ > m/^[t]?blast[npx]/ && do { > ------- > > So i modified it pretty ugly into the following but now it works for me: > ------ > m/^(t|psi|rps|rpst)?blast[npx]?/ && do { > ------ > I dont know if it may be more beautiful but i suppose it could :) > > Cheers > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From David.Messina at sbc.su.se Thu Jun 3 13:45:19 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 19:45:19 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From staffa at niehs.nih.gov Thu Jun 3 13:59:20 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 13:59:20 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Message-ID: I was thinking about where the default restriction information is kept. I remember trying to use the withrefm file in the manner outlined below, and it didn't work. I did not know about File::Temp. I must find out about this. On 6/3/10 1:45 PM, "Dave Messina" wrote: Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From David.Messina at sbc.su.se Thu Jun 3 14:14:55 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 20:14:55 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From staffa at niehs.nih.gov Thu Jun 3 14:17:42 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 14:17:42 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> Message-ID: Thanks Muchly. I'll give it a try. On 6/3/10 2:14 PM, "Dave Messina" wrote: > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From gopal.cshl at gmail.com Fri Jun 4 07:23:59 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 07:23:59 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast Message-ID: Hi, I am trying to run standalone blast and parse the files, both using BioPerl. When running a moderately big file, I keep getting this message: "Error in tempfile() using /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not create temp file /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. please help me how to fix this problem, thanks, -gopal From pengyu.ut at gmail.com Fri Jun 4 10:47:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 09:47:13 -0500 Subject: [Bioperl-l] How to print get_available_databases? Message-ID: Hi, I want to print get_available_databases using foreach. But it prints all 1's. I know that this is a perl question. But I still ask it here because people on a more general perl mailing may not have bioperl installed. use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar',); print $factory->get_available_databases, "\n"; print "available databases: \n\t", join("\n\t",$factory->get_available_databases),"\n"; foreach($factory->get_available_databases) { print print "\n"; } -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 11:10:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:10:48 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: You should post code examples that cause the problem (the more concise the better). My guess is you are somehow caching the files by persisting the SearchIO instances; files for these are normally cleaned up when the SearchIO instance is destroyed. If needed you can also call cleanup() from the standaloneblast instance to clean them up manually. chris On Jun 4, 2010, at 6:23 AM, Gopal wrote: > Hi, > > I am trying to run standalone blast and parse the files, both using BioPerl. > > When running a moderately big file, I keep getting this message: > > "Error in tempfile() using > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > create temp file > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > please help me how to fix this problem, > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 4 11:14:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:14:08 -0500 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <8F4443A9-6517-400F-AA9E-B00F511CC600@illinois.edu> On Jun 4, 2010, at 9:47 AM, Peng Yu wrote: > Hi, > > I want to print get_available_databases using foreach. But it prints > all 1's. I know that this is a perl question. But I still ask it here > because people on a more general perl mailing may not have bioperl > installed. > > ... > foreach($factory->get_available_databases) { > print > print "\n"; > } > > > -- > Regards, > Peng You are missing a semicolon: foreach($factory->get_available_databases) { print; print "\n"; } Without it, the first print() prints the results of the second print() (which prints the newline), which evals to success, or 1. chris From asidhu at biomap.org Fri Jun 4 11:33:44 2010 From: asidhu at biomap.org (Amandeep Sidhu) Date: Fri, 4 Jun 2010 23:33:44 +0800 Subject: [Bioperl-l] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010) Message-ID: IEEE CBMS 2010 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 Perth, Australia, 12-15 October 2010 http://www.cbms2010.curtin.edu.au/ The 23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS 2010) is intended to provide an international forum for discussing the latest results in the field of computational medicine. The scientific program of CBMS 2010 will consist of invited keynote talks given by leading scientists in the field, and regular and special track sessions that cover a broad array of issues which relate computing to medicine. RELEVANT TOPICS Network and Telemedicine Systems Medical Databases & Information Systems Computer-Aided Diagnosis Medical Devices with Embedded Computers Bioinformatics in Medicine Software Systems in Medicine Pervasive Health Systems and Services Web-based Delivery of Medical Information Medical Image Segmentation & Compression Content Analysis of Biomedical Image Data Knowledge-Based & Decision Support Systems Hand-held Computing Applications in Medicine Knowledge Discovery & Data Mining Signal and Image Processing in Medicine Multimedia Biomedical Databases CBMS 2010 invites original previously unpublished contributions that are not submitted concurrently to a journal or another conference. Many of the above listed topics are represented by corresponding Special Tracks, while others are solely covered by the general CBMS track. Prospective authors are expected to submit their contributions to one of the corresponding Special Tracks or to the general track if none of the special tracks is relevant. SPECIAL TRACKS ST1: Computational Proteomics and Genomics ST2: Knowledge Discovery and Decision Systems in Biomedicine ST3: Ontologies for Biomedical Systems ST4: HealthGrid & Cloud Computing ST5: Technology Enhanced Learning in Medical Education ST6: Intelligent Patient Management ST7: Data Streams in Healthcare ST8: Supporting Collaboration among Healthcare Workers ST9: Telemedicine ST10: Computer-Based Systems for Mental Health ST11: Image Informatics in Biomedical Research and Clinical Medicine ST12: e-Health SUBMISSION GUIDELINES Papers should be submitted electronically using EasyChair online submission system. The papers must be prepared following the IEEE two-column format and should not exceed the length of 6 (six) Letter-sized pages. LaTeX or Microsoft Word templates can be used when preparing the papers. Please, note that only PDF format of submissions is allowed. Submission web site: http://www.easychair.org/conferences/?conf=cbms2010 All submissions will be peer-reviewed by at least three reviewers. The proceedings will be published by the IEEE Computer Society Press. At least one of the authors of accepted papers is required to register and present the work at the conference; otherwise their papers will be removed from the digital library after the conference. IMPORTANT DATES Submission deadline for regular papers: 24 June 2010 Deadline for tutorial submission: 24 June 2010 Notification of acceptation for papers and tutorials: 2 Aug 2010 Final camera ready due: 2 Sep 2010 Author registration: 2 Sep 2010 INTENDED AUDIENCE Engineers, scientists, clinicians and managers involved in medical computing projects are encouraged to submit papers to the symposium and/or attend the symposium. The symposium provides its attendees with an opportunity to experience state-of-the-art research and development in a variety of topics directly and indirectly related to their own work. In addition to research papers, keynote speakers and tutorial sessions it provides participants with an opportunity to come up-to-date on important technological issues. The symposium encourages the participation of students engaged in research/development in computer-based medical systems. Organizing Committee GENERAL CHAIRS Tharam Dillon, Curtin University of Technology, Australia Daniel Rubin, National Center for Biomedical Ontologies, USA William Gallagher, University College Dublin, Ireland PROGRAM CHAIRS Amandeep Sidhu, Curtin University of Technology, Australia Alexey Tsymbal, Siemens, Germany PUBLICATION CHAIRS Mykola Pechenizkiy, Eindhoven University of Technology, Netherlands Tony Hu, Drexel University, USA SPECIAL TRACK CHAIRS Maja Hadzic, Curtin University of Technology, Australia Jake Chen, Indiana University, USA TUTORIAL CHAIRS Phoebe Chen, La Trobe University, Australia Xiaofang Zhou, University of Queensland, Australia PUBLICITY CHAIRS Carolyn McGregor, University of Ontario Institute of Technology, Canada Meifania Chen, Curtin University of Technology, Australia From David.Messina at sbc.su.se Fri Jun 4 11:39:44 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 4 Jun 2010 17:39:44 +0200 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <1402B6DE-5EB6-4436-B139-704C7DA66F1C@sbc.su.se> Hi Peng, In your code > foreach($factory->get_available_databases) { > print > print "\n"; > } > You're not printing anything that's coming from get_available_databases. You say print print Which means print the return value from the print command, which is true, or in other words, '1'. Not what you want. Here you have encountered the peril of implicit variables. When you write a foreach loop, the idea is to put a name on each item, one after the other, from an array of items. So it's good idea to be explicit about what that name is. For example: foreach my $database ($factory->get_available_databases) { print $database, "\n"; } In this way it's much clearer what you are doing (and it actually works! :) ). Dave From gopal.cshl at gmail.com Fri Jun 4 11:45:03 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 11:45:03 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: Hi Chris, this is the code. Sorry I did not realize I should post the code: my @params = ( program => 'blastp', database => '/Users/XXX/Desktop/genomes/BAA/all.faa'); my $blast_obj = Bio::Tools::Run::StandAloneBlast->new(@params); my $in= $ARGV[0]; print "Query_name\t". "Hit name\t" ."Hit description\t" ."Hit length\t" . "percent_identity\t" . "start('hit')\t" ."end('hit')\t" ."start('query')\t" . "start('query')\n"; my $seqio_obj = Bio::SeqIO->new(-file=> '2cs2151.fasta', '-format' => 'Fasta'); #print $seq_in->name."\n"; my @seq_array =(); my $seqc=1; my $blast_report; my @reports; my @hits; while( my $input = $seqio_obj->next_seq() ) { # $blast_report = $blast_obj->blastall($input); push(@reports,$blast_report); } foreach(@reports){ #print $_->next_result->num_hits."xxx\n"; while(my $result=$_->next_result){ #if($result->num_hits){ my @stats = $result->available_statistics; my @params = $result->available_parameters; while(my $hit= $result->next_hit){ while ( my $hsp = $hit->next_hsp ) { if ($hsp->percent_identity >=90){ my $id = $hit->matches('id'); my $cons = $hit->matches('cons'); my @accs = $hit->each_accession_number; my @qidentical = $hit->seq_inds('query','identical'); my @qconserved = $hit->seq_inds('query','conserved'); my @hidentical = $hit->seq_inds('hit','identical'); my @hconserved = $hit->seq_inds('hit','conserved'); #loop 2b stuff removed from here print $result->query_name. "\t"; my $name= fix_name($hit->name); print $name . "\t"; #print "Hit\taccession\t" . $hit->accession . "\n"; if($hit->description=~/.+(.ESA.+\d+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+\w)\s*\[.+turicensis.+/){ print $1." [ct3032]"."\t"; }else{ print $hit->description . "\t"; } print $hit->length . "\t"; my @hrange = $hsp->range('hit'); my @qrange = $hsp->range('query'); my $aln = $hsp->get_aln; my $alnIO = Bio::AlignIO->new(-format=>"clustalw"); my $p=sprintf("%.1f", $hsp->percent_identity); print $p. "\t"; # print "HSP\tstrand()\t" . $hsp->strand() . "\n"; print $hsp->start('hit') . "\t"; print $hsp->end('hit') . "\t"; print $hsp->start('query') . "\t"; print $hsp->end('query') . "\n"; # print "HSP\talignment\n"; # print $alnIO->write_aln($aln); } } } #} } } On Fri, Jun 4, 2010 at 11:10 AM, Chris Fields wrote: > You should post code examples that cause the problem (the more concise the > better). My guess is you are somehow caching the files by persisting the > SearchIO instances; files for these are normally cleaned up when the > SearchIO instance is destroyed. > > If needed you can also call cleanup() from the standaloneblast instance to > clean them up manually. > > chris > > > On Jun 4, 2010, at 6:23 AM, Gopal wrote: > > > Hi, > > > > I am trying to run standalone blast and parse the files, both using > BioPerl. > > > > When running a moderately big file, I keep getting this message: > > > > "Error in tempfile() using > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > > create temp file > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many > open > > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > > > please help me how to fix this problem, > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From jessica.sun at gmail.com Fri Jun 4 12:03:06 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 4 Jun 2010 12:03:06 -0400 Subject: [Bioperl-l] Highlighted short sequences Message-ID: Does any one know if there is any existing function of bioperl that can locate and highlighted short stretch of nt sequences within long genomic sequences ? Thanks in advance. -- Jessica Jingping Sun From pengyu.ut at gmail.com Fri Jun 4 12:15:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:15:10 -0500 Subject: [Bioperl-l] The usage of $field->$_ Message-ID: In the Eutilities cookbook, http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook I see the following code, print join(',', grep {$field->$_} qw(is_date is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; I'm not quite familiar with the usage of $field->$_. I don't see where it is covered in man perlvar (I don't the usage of $_ for pattern matching, but not in $variable->$). Would you please let me know where is the document that explain this usage? -- Regards, Peng From pengyu.ut at gmail.com Fri Jun 4 12:33:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:33:10 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? Message-ID: Hi, It seems that term_count is not available for einfo. $ ./main.pl Can't locate object method "term_count" via package "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. $ vim ./main.pl pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ cat ./main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar', -db => 'pubmed'); while (my $field = $factory->next_FieldInfo) { print "term_count: ",$field->term_count,"\n"; } But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' doesn't say so. Could you let me know where to find which methods are available for which eutilities? -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 12:44:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 11:44:44 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> On Jun 4, 2010, at 10:45 AM, Gopal wrote: > Hi Chris, > > this is the code. Sorry I did not realize I should post the code: > > > ... > while( my $input = $seqio_obj->next_seq() ) { > # > $blast_report = $blast_obj->blastall($input); > > push(@reports,$blast_report); > > } > ... Yep, you're caching your SearchIO instances here. No need; if you want to cache you should cache the Result object instead. Something like push(@reports, $blast_report->next_result); Probably best to rethink this strategy unless you have absolutely no other way to deal with your data, if you have lots of BLAST reports you will suck up memory very quickly. > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 chris From pengyu.ut at gmail.com Fri Jun 4 12:57:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:57:43 -0500 Subject: [Bioperl-l] get_dbfrom document Message-ID: According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, get_dbfrom is alias for get_db(). get_dbfrom Title : get_dbfrom Usage : my $origdb = $link->get_dbfrom; Function : returns referring database Returns : string Args : none Note : alias for get_db() I'm not sure what get_db() is but I only see get_db. Is get_db the same as get_db()? If this is true, then get_dbfrom is not an alias for get_db, because I get different result for the two variables. Am I understanding it correctly? -- Regards, Peng From gopal.cshl at gmail.com Fri Jun 4 13:51:04 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 13:51:04 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: Hi Chris, I followed your suggestion and changed the loop into: On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > > > while( my $input = $seqio_obj->next_seq() ) { > > # > > $blast_report = $blast_obj->blastall($input); > > > > push(@reports,$blast_report); > > > > } > > ... > > Yep, you're caching your SearchIO instances here. No need; while( my $input = $seqio_obj->next_seq() ) { $blast_report = $blast_obj->blastall($input); while(my $result=$blast_report->next_result){ Now no objects are cached in arrays. The script worked fine with one genome already and the other is running. thanks for cleaning things up. I will remember to avoid this snag. best, -gopal > if you want to cache you should cache the Result object instead. Something > like > > push(@reports, $blast_report->next_result); > > Probably best to rethink this strategy unless you have absolutely no other > way to deal with your data, if you have lots of BLAST reports you will suck > up memory very quickly. > > > -- > > Gopal Gopinathrao, PhD > > Bioinformaticist / Biologist > > CFSAN, US FDA > > www.patrn.net/patrn > > gopal.gopinathrao at fda.hhs.gov > > P: 301-210-7881 > > > chris -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From pengyu.ut at gmail.com Fri Jun 4 15:58:09 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 14:58:09 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms Message-ID: Hi, I think that there is a typo in the document of get_replaced_terms. The following is from perldoc Bio::DB::EUtilities. $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? (Note 's'). get_replaced_terms Title : get_replaced_terms Usage : my $term = $eutil->get_replaced_term Function : returns array of strings replaced in the query Returns : string Args : none Notes : only applicable for espell Also, I tried the following code. I'm not sure I got the following error. Would you please let me know what I'm wrong? $ cat ./get_replaced_terms/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; $ ./get_replaced_terms/main.pl Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. get_replaced_terms: -- Regards, Peng From maj at fortinbras.us Fri Jun 4 16:06:55 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Fri, 4 Jun 2010 16:06:55 -0400 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4F3323F9671041598734EFC85C395925@NewLife> This is a fairly basic perl idiom. $_ is changing with the outer loop containing the print statement, which is probably looping through the accessors for the object represented by $field. ----- Original Message ----- From: "Peng Yu" To: Sent: Friday, June 04, 2010 12:15 PM Subject: [Bioperl-l] The usage of $field->$_ > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From pengyu.ut at gmail.com Fri Jun 4 16:26:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 15:26:53 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: <4F3323F9671041598734EFC85C395925@NewLife> References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: I know this is not a hard question. But I'm still learning perl. I don't see the usage "->$_" in man perlvar. Would you please show me where is the documentation that has detailed discussion on this? On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen wrote: > This is a fairly basic perl idiom. $_ is changing with the outer loop > containing the print statement, which is probably looping through the > accessors for the object represented by $field. > ----- Original Message ----- From: "Peng Yu" > To: > Sent: Friday, June 04, 2010 12:15 PM > Subject: [Bioperl-l] The usage of $field->$_ > > >> In the Eutilities cookbook, >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook >> >> I see the following code, >> >> ? print join(',', grep {$field->$_} qw(is_date >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; >> >> I'm not quite familiar with the usage of $field->$_. I don't see where >> it is covered in man perlvar (I don't the usage of $_ for pattern >> matching, but not in $variable->$). Would you please let me know where >> is the document that explain this usage? >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > -- Regards, Peng From Kevin.M.Brown at asu.edu Fri Jun 4 16:46:36 2010 From: Kevin.M.Brown at asu.edu (Kevin Brown) Date: Fri, 4 Jun 2010 13:46:36 -0700 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: <1A4207F8295607498283FE9E93B775B406C40162@EX02.asurite.ad.asu.edu> That's because you are mixing up two things. -> is an accessor and not part of a variable. $_ is a variable and is in perlvar. And this isn't a list for learning PERL. There are plenty of resources out their for learning general PERL information. Kevin Brown Center for Innovations in Medicine Biodesign Institute Arizona State University > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, June 04, 2010 1:27 PM > To: Mark A. Jensen > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] The usage of $field->$_ > > I know this is not a hard question. But I'm still learning perl. > > I don't see the usage "->$_" in man perlvar. Would you please show me > where is the documentation that has detailed discussion on this? > > On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen > wrote: > > This is a fairly basic perl idiom. $_ is changing with the > outer loop > > containing the print statement, which is probably looping > through the > > accessors for the object represented by $field. > > ----- Original Message ----- From: "Peng Yu" > > To: > > Sent: Friday, June 04, 2010 12:15 PM > > Subject: [Bioperl-l] The usage of $field->$_ > > > > > >> In the Eutilities cookbook, > >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > >> > >> I see the following code, > >> > >> ? print join(',', grep {$field->$_} qw(is_date > >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden > is_numerical)),"\n\n"; > >> > >> I'm not quite familiar with the usage of $field->$_. I > don't see where > >> it is covered in man perlvar (I don't the usage of $_ for pattern > >> matching, but not in $variable->$). Would you please let > me know where > >> is the document that explain this usage? > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > > > > > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From armendarez77 at hotmail.com Fri Jun 4 17:47:39 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Fri, 4 Jun 2010 14:47:39 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 Message-ID: Hello, I'm noticing that Bio::Tools::Run::Primer3 doesn't always give me the same results as the Web Primer3. For example, I provided Bio::Tools::Run::Primer3 the following: Template Sequence: atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg PRIMER_LEFT_INPUT: atgagncttctaaccgagGTcGAAACGTA PRIMER_TASK: pick_left_only I just want to know if the Tm is between 60 and 80C. However, Bio::Tools::Run::Primer3 returns nothing, while Web Primer3 returns a result, as expected: OLIGO start len tm gc% any 3' seq LEFT_PRIMER 1 29 69.11 46.43 4.00 2.00 atgagncttctaaccgagGTcGAAACGTA SEQUENCE SIZE: 225 INCLUDED REGION SIZE: 225 1 atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTC >>>>>>>>>>>>>>>>>>>>>>>>>>>>> 61 AAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAg 121 GCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTn 181 GGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg _________________________________________ Here is a snippet of my code for the above parameters: my $template = "atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg"; my $leftInput = "atgagncttctaaccgagGTcGAAACGTA"; my $templateObj = Bio::PrimarySeq->new(-seq=>$template, -id=>'Template'); my $primer3 = Bio::Tools::Run::Primer3->new(-seq=>$templateObj, -path =>"/usr/bin/primer3_core"); unless ($primer3->executable) {print STDERR "primer3 can not be found. Is it installed?\n"; exit(-1)} $primer3->add_targets('PRIMER_LEFT_INPUT'=>$primerSeq, 'PRIMER_TASK'=>'pick_left_only'); my $results=$primer3->run; my $numberResults = $results->number_of_results(); if($numberResults > 0){ for(my $n=0; $n < $numberResults; $n++){ my $pr = $results->primer_results($n); my $primer = ${$pr}{'PRIMER_LEFT_SEQUENCE'}; my $gc = ${$pr}{'PRIMER_LEFT_GC_PERCENT'}; my $tm = ${$pr}{'PRIMER_LEFT_TM'}; my $selfAny = ${$pr}{'PRIMER_LEFT_SELF_ANY'}; my $selfEnd = ${$pr}{'PRIMER_LEFT_SELF_END'}; my $endStability = ${$pr}{'PRIMER_LEFT_END_STABILITY'}; print "$primer\t$gc\t$tm\t$selfAny\t$selfEnd\t$endStability\n"; } } This seems pretty straightforward, but I don't get any results. Can you see what I am doing wrong? Thank you, Veronica _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From David.Messina at sbc.su.se Fri Jun 4 18:31:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:31:50 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: On Jun 4, 2010, at 9:58 PM, Peng Yu wrote: > I think that there is a typo in the document of get_replaced_terms. Fixed, thanks. Dave From David.Messina at sbc.su.se Fri Jun 4 18:47:36 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:47:36 +0200 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: References: Message-ID: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Hi Jessica, > Does any one know if there is any existing function of bioperl that can > locate and highlighted short stretch of nt sequences within long genomic sequences ? I don't think there is an out-of-the-box BioPerl solution for this. You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. A simply way, requiring no special code, would be to change the case of the letters: agctagcatgcatgcAGACTGATCATCagctagctac Or use HTML: agctagcatgcatgcAGACTGATCATCagctagctac For some more sophisticated options, take a look at Bio::Graphics: http://search.cpan.org/perldoc?Bio::Graphics Dave From David.Messina at sbc.su.se Fri Jun 4 19:06:06 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:06:06 +0200 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > It seems that term_count is not available for einfo. The method is actually get_term_count, not term_count. Thanks for catching that (now fixed). Dave From David.Messina at sbc.su.se Fri Jun 4 19:21:41 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:21:41 +0200 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <575B0EED-748C-40AE-A0C2-4EE94E0315A1@sbc.su.se> > I'm not sure what get_db() is but I only see get_db. > Is get_db the same as get_db()? Yes. Think about how you call most functions. They take arguments in parentheses after their name. Such as: my $string = join("\t", @array); "\t" and @array are arguments to the join function. Or: my $lowercase_string = lc("MY UPPERCASE STRING"); "MY UPPERCASE STRING" is an argument to the lc function. So in Perl we often write join() or lc() to indicate that join() and lc() are functions. > If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. >From looking at the code, I think you're right. get_db() and get_dbto() are aliases for get_database(), all of which refer to the queried database. But get_dbfrom() gives you the referring database, that is the database linked from (as pointed out in the synopsis. Fixed this. Dave From David.Messina at sbc.su.se Fri Jun 4 20:10:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:10:20 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Please be sure to "reply all" so that this conversation stays on the mailing list. > Could you also take a look at the question in the original email? Thank you! Oops, missed that. > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: I think you might have pasted two different examples together. From http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#espell the correct method to call when using espell is get_corrected_query: print "Did you mean \"",$factory->get_corrected_query, "\"?\n"; instead of the get_replaced_terms one. Dave From David.Messina at sbc.su.se Fri Jun 4 20:16:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:16:57 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: Message-ID: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Hi Veronica, Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? Dave From pengyu.ut at gmail.com Fri Jun 4 20:46:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 19:46:53 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Fri, Jun 4, 2010 at 7:10 PM, Dave Messina wrote: > Please be sure to "reply all" so that this conversation stays on the mailing list. > >> Could you also take a look at the question in the original email? Thank you! > > > Oops, missed that. > >> Also, I tried the following code. I'm not sure I got the following >> error. Would you please let me know what I'm wrong? >> >> $ cat ./get_replaced_terms/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::DB::EUtilities; >> >> my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', >> ? ? ? ? ? ? ? ? ? ? ? ? -term => 'brest cnacer', >> ? ? ? ? ? ? ? ? ? ? ? ? -email => 'mymail at foo.bar' >> ? ? ? ? ? ? ? ? ? ? ? ); >> >> print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; >> >> $ ?./get_replaced_terms/main.pl >> Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. >> get_replaced_terms: > > > I think you might have pasted two different examples together. No. I want to try get_replaced_terms instead of get_corrected_query. Could you give me an example in which get_replaced_terms is used? -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 06:51:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:20 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: Most of these methods have changed to get_* methods (nothing is settable). I'll go through and check them for consistency, just to make sure. chris On Jun 4, 2010, at 11:33 AM, Peng Yu wrote: > Hi, > > It seems that term_count is not available for einfo. > > > $ ./main.pl > Can't locate object method "term_count" via package > "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. > $ vim ./main.pl > pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ > cat ./main.pl > > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', > -email => 'mymail at foo.bar', > -db => 'pubmed'); > > while (my $field = $factory->next_FieldInfo) { > print "term_count: ",$field->term_count,"\n"; > } > > > But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' > doesn't say so. Could you let me know where to find which methods are > available for which eutilities? > > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:51:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:30 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4A770918-B0F3-4BD8-9DAC-2B7BD2CCF4F3@illinois.edu> $_ is the value being iterated through in a grep of a list of values. This is just using that list as methods (like $field->is_date, but for each method), testing the return value as defined, and if so adding to the list for the join. chris On Jun 4, 2010, at 11:15 AM, Peng Yu wrote: > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:55:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:55:17 -0500 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <44C403BF-1C78-4793-ACD5-BA6A18D6A153@illinois.edu> That's incorrect; get_dbfrom for elink is the originating database; get_db should always be the database that is queried (for elink this is dbto). Will look into it. chris On Jun 4, 2010, at 11:57 AM, Peng Yu wrote: > According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, > get_dbfrom is alias for get_db(). > > get_dbfrom > Title : get_dbfrom > Usage : my $origdb = $link->get_dbfrom; > Function : returns referring database > Returns : string > Args : none > Note : alias for get_db() > > I'm not sure what get_db() is but I only see get_db. Is get_db the > same as get_db()? If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. > > Am I understanding it correctly? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 06:56:49 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:56:49 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: <4EA71510-CF81-4D93-921A-F479309281E4@illinois.edu> We do have the cleanup() method if caching, but in practice I've found that caching is very rarely ever needed. chris On Jun 4, 2010, at 12:51 PM, Gopal wrote: > Hi Chris, > > I followed your suggestion and changed the loop into: > > On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > >> >>> while( my $input = $seqio_obj->next_seq() ) { >>> # >>> $blast_report = $blast_obj->blastall($input); >>> >>> push(@reports,$blast_report); >>> >>> } >>> ... >> >> Yep, you're caching your SearchIO instances here. No need; > > > > > while( my $input = $seqio_obj->next_seq() ) { > $blast_report = $blast_obj->blastall($input); > > > while(my $result=$blast_report->next_result){ > > Now no objects are cached in arrays. The script worked fine with one genome > already and the other is running. > thanks for cleaning things up. I will remember to avoid this snag. > > best, > > -gopal > > > > > > > > > > > > >> if you want to cache you should cache the Result object instead. Something >> like >> >> push(@reports, $blast_report->next_result); >> >> Probably best to rethink this strategy unless you have absolutely no other >> way to deal with your data, if you have lots of BLAST reports you will suck >> up memory very quickly. >> >>> -- >>> Gopal Gopinathrao, PhD >>> Bioinformaticist / Biologist >>> CFSAN, US FDA >>> www.patrn.net/patrn >>> gopal.gopinathrao at fda.hhs.gov >>> P: 301-210-7881 >> >> >> chris > > > > > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:34:34 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:34:34 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Message-ID: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. chris On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > Hi Veronica, > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > Dave > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 08:36:18 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:36:18 -0500 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> References: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Message-ID: On Jun 4, 2010, at 5:47 PM, Dave Messina wrote: > Hi Jessica, > > >> Does any one know if there is any existing function of bioperl that can >> locate and highlighted short stretch of nt sequences within long genomic sequences ? > > > I don't think there is an out-of-the-box BioPerl solution for this. > > You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. > > For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. > > See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. > > Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. > > A simply way, requiring no special code, would be to change the case of the letters: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > Or use HTML: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > For some more sophisticated options, take a look at Bio::Graphics: > > http://search.cpan.org/perldoc?Bio::Graphics > > > Dave GBrowse (via Bio::Graphics) does highlighting for text searches, so you could probably dig out the code used for that as a start. chris From cjfields at illinois.edu Sat Jun 5 08:37:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:37:26 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> References: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> Message-ID: <6C1D172A-B59A-4EE8-90E4-FC693CC031DB@illinois.edu> On Jun 4, 2010, at 6:06 PM, Dave Messina wrote: > > On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > >> It seems that term_count is not available for einfo. > > The method is actually get_term_count, not term_count. > > Thanks for catching that (now fixed). > > > Dave Thanks for the doc fixes dave. I'll go through and see if there are any more. Peng, let me know if you run into anything else (or you can submit them to bugzilla if needed). chris From cjfields at illinois.edu Sat Jun 5 08:40:29 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:40:29 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Jun 4, 2010, at 7:46 PM, Peng Yu wrote: >> I think you might have pasted two different examples together. > > No. I want to try get_replaced_terms instead of get_corrected_query. > Could you give me an example in which get_replaced_terms is used? > > -- > Regards, > Peng Peng, This is just a value that NCBI returns, indicating which terms have been replaced in a query. chris From cjfields at illinois.edu Sat Jun 5 09:20:19 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:20:19 -0500 Subject: [Bioperl-l] Leftover SVN tags Message-ID: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... chris From cjfields at illinois.edu Sat Jun 5 09:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:35:51 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <6B14D526-D9F8-416B-8B7A-273817892C7A@illinois.edu> On Jun 4, 2010, at 2:58 PM, Peng Yu wrote: > Hi, > > I think that there is a typo in the document of get_replaced_terms. > The following is from perldoc Bio::DB::EUtilities. > $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? > (Note 's'). > > > get_replaced_terms > Title : get_replaced_terms > Usage : my $term = $eutil->get_replaced_term > Function : returns array of strings replaced in the query > Returns : string > Args : none > Notes : only applicable for espell > > > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: > > > -- > Regards, > Peng There were no replaced terms returned, you can see this in the raw XML (see below). So the method doesn't return anything, hence the warning. You can get around this if you do something like: print "get_replaced_terms: ".($factory->get_replaced_terms || '')."\n"; chris pyrimidine1:email cjfields$ cat espell.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print $factory->get_Response->content."\n"; pyrimidine1:email cjfields$ perl espell.pl pubmed brest cnacer breast cancer chris From hlapp at drycafe.net Sat Jun 5 10:50:23 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 5 Jun 2010 10:50:23 -0400 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Message-ID: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. -hilmar On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > Looks like we have $Id$ tags left over from SVN. The question is, > so we want to keep these in and have them expanded via > gitattributes? Personally having the SHA in there seems kinda > pointless.... > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 5 11:12:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 10:12:26 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> Message-ID: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> That was the only reason I could think of, but truthfully I generally have the user indicate which $Bio::Root::Root::VERSION and/or 'perldoc -l Bio::Root::Root' (the latter which gives the location of the bioperl install). chris On Jun 5, 2010, at 9:50 AM, Hilmar Lapp wrote: > It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. > > But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. > > -hilmar > > On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > >> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sat Jun 5 11:44:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 10:44:43 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) Message-ID: The following problem generate exceptions, because certain parameters are not passed to reset_parameters. However, I think that it is reasonable to avoid setting any parameters that have already been set using new(). If my understand is correct, I'd suggest that reset_parameters should only take parameters that need to be reset but not to take parameters that don't have be reset. #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'protein', -term => 'BRCA1 AND human', -email => 'mymail at foo.bar', ); print "get_retmax(): ",$factory->get_retmax(),"\n"; my $count=$factory->get_count; print "count: ",$count,"\n"; $factory->reset_parameters(-eutil => 'esearch', # -db => 'protein', # -term => 'BRCA1 AND human', # -email => 'mymail at foo.bar', -retmax => $count ); print "get_retmax(): ",$factory->get_retmax(),"\n"; -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 16:09:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 15:09:37 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) In-Reply-To: References: Message-ID: <00436010-A1D5-441F-91A7-591E7E7D4F79@illinois.edu> On Jun 5, 2010, at 10:44 AM, Peng Yu wrote: > The following problem generate exceptions, because certain parameters > are not passed to reset_parameters. However, I think that it is > reasonable to avoid setting any parameters that have already been set > using new(). If my understand is correct, I'd suggest that > reset_parameters should only take parameters that need to be reset but > not to take parameters that don't have be reset. You need to use set_parameters() to carry over parameters to subsequent searches. Just as the name of the method implies, reset_parameters() resets pretty much everything, then sets what you pass, and is necessary between certain steps to ensure you aren't carrying over parameters that cause problems when switching eutils if using the same instance (this used to be a problem with elink in particular). I may add an exception for email and tool parameters as a convenience for the obvious reasons. However, changing the below to set_parameters() works for me. > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'protein', > -term => 'BRCA1 AND human', > -email => 'mymail at foo.bar', > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > my $count=$factory->get_count; > print "count: ",$count,"\n"; > > $factory->reset_parameters(-eutil => 'esearch', > # -db => 'protein', > # -term => 'BRCA1 AND human', > # -email => 'mymail at foo.bar', > -retmax => $count > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > > > -- > Regards, > Peng chris From pengyu.ut at gmail.com Sat Jun 5 17:28:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 16:28:18 -0500 Subject: [Bioperl-l] bioperl support for running blast locally Message-ID: There is a module to run blast remotely Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and I think that it makes more sense for me to run blast locally. Is there a way to let bioperl parse the output from my local command line blast? -- Regards, Peng From florent.angly at gmail.com Sat Jun 5 18:55:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Sun, 06 Jun 2010 08:55:56 +1000 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: Message-ID: <4C0AD5FC.1070907@gmail.com> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / BlastPlus.pm Then to parse the results, you can read this: http://www.bioperl.org/wiki/HOWTO:SearchIO Florent On 06/06/2010 07:28 AM, Peng Yu wrote: > There is a module to run blast remotely > Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and > I think that it makes more sense for me to run blast locally. Is there > a way to let bioperl parse the output from my local command line > blast? > > From pengyu.ut at gmail.com Sat Jun 5 19:16:40 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:16:40 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0AD5FC.1070907@gmail.com> References: <4C0AD5FC.1070907@gmail.com> Message-ID: It seems that StandAloneBlastPlus is a higher level wrapper than BlastPlus. Is it better to use StandAloneBlastPlus? Essentially, what I need is to compare pairs of sequences. Note that I want to use the bash Process substitution to avoid generating temp files. Does StandAloneBlastPlus support this? If yes, would you please how me what command to use? blastn -query <(echo GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) -subject <(echo CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: > To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ > BlastPlus.pm > Then to parse the results, you can read this: > http://www.bioperl.org/wiki/HOWTO:SearchIO > Florent > > On 06/06/2010 07:28 AM, Peng Yu wrote: >> >> There is a module to run blast remotely >> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >> I think that it makes more sense for me to run blast locally. Is there >> a way to let bioperl parse the output from my local command line >> blast? >> >> > > -- Regards, Peng From pengyu.ut at gmail.com Sat Jun 5 19:19:06 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:19:06 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? Message-ID: http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus The following cpan link shown in the above page is not working. Could you let me know where to download the module? http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 19:57:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:57:56 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, Re: StandAloneBlastPlus, is this not covered in it's HOWTO? http://www.bioperl.org/wiki/HOWTO:BlastPlus As for CPAN doc links, the wiki page links are autogenerated via a template; unfortunately the BlastPlus code hasn't been added to CPAN yet (hence the broken link). There is a tentative plan to push through a 1.6.2 very soon, which should include this. chris On Jun 5, 2010, at 6:19 PM, Peng Yu wrote: > http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus > > The following cpan link shown in the above page is not working. Could > you let me know where to download the module? > > http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 19:59:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:59:41 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> Message-ID: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). For the rest, please see the associated documentation and the HOWTO: http://www.bioperl.org/wiki/HOWTO:BlastPlus chris On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > It seems that StandAloneBlastPlus is a higher level wrapper than > BlastPlus. Is it better to use StandAloneBlastPlus? > > Essentially, what I need is to compare pairs of sequences. Note that I > want to use the bash Process substitution to avoid generating temp > files. Does StandAloneBlastPlus support this? If yes, would you please > how me what command to use? > > blastn -query <(echo > GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) > -subject <(echo > CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) > > > On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >> BlastPlus.pm >> Then to parse the results, you can read this: >> http://www.bioperl.org/wiki/HOWTO:SearchIO >> Florent >> >> On 06/06/2010 07:28 AM, Peng Yu wrote: >>> >>> There is a module to run blast remotely >>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>> I think that it makes more sense for me to run blast locally. Is there >>> a way to let bioperl parse the output from my local command line >>> blast? >>> >>> >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 22:38:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 21:38:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch Message-ID: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: Bio::Tools::Match Bio::Tools::Phylo::Gerp Bio::Tools::Phylo::Gumby As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. chris From cjfields at illinois.edu Sat Jun 5 23:40:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 22:40:54 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch In-Reply-To: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> References: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> Message-ID: <3F0840D3-F8CF-4503-99DF-2A550788C9DE@illinois.edu> After removal and some changes for API consistency, all tests pass on the branch, so it's ready to merge. chris On Jun 5, 2010, at 9:38 PM, Chris Fields wrote: > As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. > > However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: > > Bio::Tools::Match > Bio::Tools::Phylo::Gerp > Bio::Tools::Phylo::Gumby > > As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: > > http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated > > If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. > > chris > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 08:04:22 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 14:04:22 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> Message-ID: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository?" If there is, I'm fine with dropping the in-file $Id$ rev/author/datestamp information. (Seems like that's the Way of Git, anyway). If not, though, I'm kinda inclined to keep some sort of author and datestamp in each file. I am prepared to be convinced otherwise, though. I've done a little reading on this issue, but I don't fully understand the arguments against. Dave From pengyu.ut at gmail.com Sun Jun 6 09:01:14 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 08:01:14 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run Message-ID: I downloaded bioperl-live and bioperl-run by svn. bioperl-live is installed correctly. $ echo $PERL5LIB $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Perl; print Bio::Perl->VERSION, "\n"; $ ./main.pl 1.0069 However, bioperl-run seems can be compiled but can not be installed. bioperl-run$ ./Build install Building BioPerl-Run I'm wondering how to fix the problem. -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 09:16:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:16:51 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <7120F98E-43B2-4E71-9838-F41F06D9C668@illinois.edu> Peng, Are you installing this locally? I never recommend installing the various in-development bioperl distributions system-wide unless you absolutely need them for some particular reason; it's better to keep them local if possible. chris On Jun 6, 2010, at 8:01 AM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. bioperl-live is > installed correctly. > > $ echo $PERL5LIB > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Perl; > > print Bio::Perl->VERSION, "\n"; > > $ ./main.pl > 1.0069 > > However, bioperl-run seems can be compiled but can not be installed. > > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 09:28:23 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:28:23 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. By svn from Github? > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. We'll need more information to figure out what the problem is. Can you post the whole transcript of your failed install? Dave From cjfields at illinois.edu Sun Jun 6 09:44:35 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:44:35 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> On Jun 6, 2010, at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? There is read support for using svn and github. Also experimental write support. http://github.com/blog/626-announcing-svn-support http://github.com/blog/644-subversion-write-support >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? > > > Dave Agreed. Would be more informative. chris From David.Messina at sbc.su.se Sun Jun 6 09:47:39 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:47:39 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> Message-ID: <10FD26AE-C8BD-4717-8548-7CE3548709EA@sbc.su.se> >>> I downloaded bioperl-live and bioperl-run by svn. >> >> By svn from Github? > > There is read support for using svn and github. Also experimental write support. > > http://github.com/blog/626-announcing-svn-support > http://github.com/blog/644-subversion-write-support Right. Sorry, didn't mean to imply it wasn't possible to get it from Github via svn. I was intending to confirm that he was indeed getting the latest version. (Although, now that I think about it, these day there isn't anyhere else that it's possible to get BioPerl via svn other than Github.) Dave From David.Messina at sbc.su.se Sun Jun 6 10:16:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 16:16:20 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> > My perl is installed in a directory in my home. I think that bioperl > will be installed in the directory in the perl directory in my home, > right? Hmm, I think you still have to tell Build that you want it to install in your private directory. Have you read http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA ? > BTW, the following web address better be changed to 'Using_git". > http://www.bioperl.org/wiki/Using_Subversion Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? >> Can you post the whole transcript of your failed install? > > I assume that you are asking the Build script. Please see the > attachment. Let me know if you mean something else. No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Dave From pengyu.ut at gmail.com Sun Jun 6 11:15:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 10:15:24 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >> My perl is installed in a directory in my home. I think that bioperl >> will be installed in the directory in the perl directory in my home, >> right? > > Hmm, I think you still have to tell Build that you want it to install in your private directory. > > Have you read > > http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA I actually read the description. But I don't understand why it is the case. When I download other packages from CPAN. I don't need to specify anything. They get automatically installed in a directory (I think it is site_perl?) in my local perl installation directory. Why I have to explicitly say where bioperl should be installed ? > ? > > >> BTW, the following web address better be changed to 'Using_git". >> http://www.bioperl.org/wiki/Using_Subversion > > Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. > > Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? Please see the following webpage.Search for "Using Subversion". http://www.bioperl.org/wiki/HOWTO:BlastPlus >>> Can you post the whole transcript of your failed install? >> >> I assume that you are asking the Build script. Please see the >> attachment. Let me know if you mean something else. > > No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Once, I saw some installing command after "Building BioPerl-Run" when I run '.Build install". But I can not reproduce it any more. I delete the download and run the installation process again. But it still doesn't seem to work. $ git clone git://github.com/bioperl/bioperl-run.git Initialized empty Git repository in /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ remote: Counting objects: 11230, done. remote: Compressing objects: 100% (2502/2502), done. remote: Total 11230 (delta 7360), reused 11184 (delta 7322) Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. Resolving deltas: 100% (7360/7360), done. Checking out files: 100% (379/379), done. $ perl Build.PLInstall scripts? y/n [n ] n Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ] n - will not run internet-requiring tests Creating new 'MYMETA.yml' with configuration results Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Creating new 'Build' script for 'BioPerl-Run' version '1.006900' $ ./Build manifest File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' Added to MANIFEST: AUTHORS Added to MANIFEST: Build.PL Added to MANIFEST: Changes Added to MANIFEST: DEPENDENCIES Added to MANIFEST: INSTALL ..... Added to MANIFEST: t/TCoffee.t Added to MANIFEST: t/TigrAssembler.t Added to MANIFEST: t/Tmhmm.t Added to MANIFEST: t/TribeMCL.t Added to MANIFEST: t/tRNAscanSE.t Added to MANIFEST: t/Vista.t $ ./Build install Building BioPerl-Run $ -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 12:25:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 11:25:59 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <413AB412-CE27-4091-9E94-D9A345F59AF3@illinois.edu> On Jun 6, 2010, at 10:15 AM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >>> My perl is installed in a directory in my home. I think that bioperl >>> will be installed in the directory in the perl directory in my home, >>> right? >> >> Hmm, I think you still have to tell Build that you want it to install in your private directory. >> >> Have you read >> >> http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA > > I actually read the description. But I don't understand why it is the case. > > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? That's not the point. You are not installing code from CPAN; you are installing code in development from our git/github repository. We can't always guarantee that it would pass tests, as the CPAN release does, nor should we need to. I know there is a need to install the latest and greatest bleeding-edge code, but there is a reason it's called 'bleeding edge'. It may not always pass tests, so installing it system-wide is definitely not recommended. I would go as far as saying that installing it locally is probably also not a good idea unless you know what you are doing. >> ? >> >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Looks like that was corrected to point to the proper location. I just want to point out something: we've now been on git/github for just over a month now. It's very possible there are links on the wiki that point to the older page. It's also possible to simply edit said pages to point to the proper page; it is a wiki, after all. If you see a link to the wrong page, feel free to edit it after logging in (anyone can get an account). >>>> Can you post the whole transcript of your failed install? >>> >>> I assume that you are asking the Build script. Please see the >>> attachment. Let me know if you mean something else. >> >> No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? > > Once, I saw some installing command after "Building BioPerl-Run" when > I run '.Build install". But I can not reproduce it any more. > > I delete the download and run the installation process again. But it > still doesn't seem to work. > > $ git clone git://github.com/bioperl/bioperl-run.git > Initialized empty Git repository in > /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ > remote: Counting objects: 11230, done. > remote: Compressing objects: 100% (2502/2502), done. > remote: Total 11230 (delta 7360), reused 11184 (delta 7322) > Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. > Resolving deltas: 100% (7360/7360), done. > Checking out files: 100% (379/379), done. > > $ perl Build.PLInstall scripts? y/n [n ] > n > Do you want to run tests that require connection to servers across the internet > (likely to cause some failures)? y/n [n ] > n > - will not run internet-requiring tests > Creating new 'MYMETA.yml' with configuration results > Can't find dist packages without a MANIFEST file > Run 'Build manifest' to generate one > > WARNING: Possible missing or corrupt 'MANIFEST' file. > Nothing to enter for 'provides' field in metafile. > Creating new 'Build' script for 'BioPerl-Run' version '1.006900' > > $ ./Build manifest > File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' > Added to MANIFEST: AUTHORS > Added to MANIFEST: Build.PL > Added to MANIFEST: Changes > Added to MANIFEST: DEPENDENCIES > Added to MANIFEST: INSTALL > ..... > Added to MANIFEST: t/TCoffee.t > Added to MANIFEST: t/TigrAssembler.t > Added to MANIFEST: t/Tmhmm.t > Added to MANIFEST: t/TribeMCL.t > Added to MANIFEST: t/tRNAscanSE.t > Added to MANIFEST: t/Vista.t > > $ ./Build install > Building BioPerl-Run > $ > > -- > Regards, > Peng I added a default MANIFEST, just in case. However, this shouldn't prevent installation, it just builds one for packaging up the distribution for CPAN. This does install on my machine locally (see below). If you reinstall (also demonstrated below) you won't see any install messages b/c no modules have changed from the build process. So, maybe it already installed successfully, and you haven't set the include path correctly so it isn't showing up? Make sure you are setting PERL5LIB or your 'use lib' directive to point to the proper location; in the below, that would be '/Users/cjfields/local/lib/perl5'. chris pyrimidine1:bioperl-run cjfields$ perl Build.PL --install-base ~/local/ Install scripts? y/n [n ]y Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ]y - will run internet-requiring tests Do you want to run tests requiring a valid email address? y/n [n ]y Enter email address: cjfields at bioperl.org Creating new 'MYMETA.yml' with configuration results Creating new 'Build' script for 'BioPerl-Run' version '1.006900' pyrimidine1:bioperl-run cjfields$ ./Build Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run Installing /Users/cjfields/local/man/man1/bp_bioperl_application_installer.pl.1 Installing /Users/cjfields/local/man/man1/bp_multi_hmmsearch.pl.1 Installing /Users/cjfields/local/man/man1/bp_panalysis.pl.1 Installing /Users/cjfields/local/man/man1/bp_papplmaker.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_neighbor.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_protdist.pl.1 Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/SoapEUtilities.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap/WSDL.pm .... Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::tRNAscanSE.3 Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::Vista.3 Installing /Users/cjfields/local/bin/bp_bioperl_application_installer.pl Installing /Users/cjfields/local/bin/bp_multi_hmmsearch.pl Installing /Users/cjfields/local/bin/bp_panalysis.pl Installing /Users/cjfields/local/bin/bp_papplmaker.pl Installing /Users/cjfields/local/bin/bp_run_neighbor.pl Installing /Users/cjfields/local/bin/bp_run_protdist.pl pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ cd pyrimidine1:~ cjfields$ perldoc -l Bio::Tools::Run::StandAloneBlastPlus /Users/cjfields/local/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm From David.Messina at sbc.su.se Sun Jun 6 12:26:04 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 18:26:04 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <594C1A8B-D33D-43FA-9B47-53B59F2D481C@sbc.su.se> On Jun 6, 2010, at 17:15, Peng Yu wrote: > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? Ah okay, I misunderstood. If it works for other CPAN installs, it should work for BioPerl. >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting >> Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to >> point to Using_git. May I ask where did you see ? that is, how did >> you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Thanks. > I delete the download and run the installation process again. But it > still doesn't seem to work. I'll take a look at this later. In the meantime, you can certainly do as Chris recommended earlier and not 'install' and just add bioperl-run/lib to your PERL5LIB. As he said, that's better anyway, since you can keep up-to-date with the latest bug fixes and changes by simply doing 'git pull'. Dave From David.Messina at sbc.su.se Sun Jun 6 14:29:45 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 20:29:45 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? > > We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? To anwer my own question, yes: http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob I copied the Perl script to here: http://gist.github.com/427769 If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. Dave From pengyu.ut at gmail.com Sun Jun 6 15:11:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 14:11:24 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: I don't see how StandAloneBlastPlus can help extract all the information I need. For example, I need to know the starts and the ends of the pair of sequences that match (1 and 33, and 1 and 33 in the following example). How many gaps and mismatches there are (no gaps and no mismatches in the following example)? The strand information. Would you please let me know if these are possible with StandAloneBlastPlus from git? $ blastn -query <(echo CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) -subject <(echo ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) > HWI-EAS11X_10097_4_1_1909_9532.txt $ cat HWI-EAS11X_10097_4_1_1909_9532.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 Score = 62.1 bits (33), Expect = 1e-15 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 ||||||||||||||||||||||||||||||||| Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: > StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). ?StandAloneBlast is the C-based legacy BLAST (they have different parameters). > > For the rest, please see the associated documentation and the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:BlastPlus > > chris > > On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > >> It seems that StandAloneBlastPlus is a higher level wrapper than >> BlastPlus. Is it better to use StandAloneBlastPlus? >> >> Essentially, what I need is to compare pairs of sequences. Note that I >> want to use the bash Process substitution to avoid generating temp >> files. Does StandAloneBlastPlus support this? If yes, would you please >> how me what command to use? >> >> blastn -query <(echo >> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >> -subject <(echo >> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >> >> >> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>> To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ >>> BlastPlus.pm >>> Then to parse the results, you can read this: >>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>> Florent >>> >>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>> >>>> There is a module to run blast remotely >>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>> I think that it makes more sense for me to run blast locally. Is there >>>> a way to let bioperl parse the output from my local command line >>>> blast? >>>> >>>> >>> >>> >> >> >> >> -- >> Regards, >> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 15:26:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 14:26:05 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: According to the SYNPOSIS and the HOWTO, the factory returns a $result object, which I assume is derived from Bio::SearchIO parsing. For more information on that see that relevant HOWTO, which gives some illustrative examples. http://www.bioperl.org/wiki/HOWTO:SearchIO chris On Jun 6, 2010, at 2:11 PM, Peng Yu wrote: > I don't see how StandAloneBlastPlus can help extract all the > information I need. For example, I need to know the starts and the > ends of the pair of sequences that match (1 and 33, and 1 and 33 in > the following example). How many gaps and mismatches there are (no > gaps and no mismatches in the following example)? The strand > information. > > Would you please let me know if these are possible with > StandAloneBlastPlus from git? > > $ blastn -query <(echo > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) > -subject <(echo > ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) >> HWI-EAS11X_10097_4_1_1909_9532.txt > $ cat HWI-EAS11X_10097_4_1_1909_9532.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > Score = 62.1 bits (33), Expect = 1e-15 > Identities = 33/33 (100%), Gaps = 0/33 (0%) > Strand=Plus/Minus > > Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 > ||||||||||||||||||||||||||||||||| > Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > > On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: >> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). >> >> For the rest, please see the associated documentation and the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:BlastPlus >> >> chris >> >> On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: >> >>> It seems that StandAloneBlastPlus is a higher level wrapper than >>> BlastPlus. Is it better to use StandAloneBlastPlus? >>> >>> Essentially, what I need is to compare pairs of sequences. Note that I >>> want to use the bash Process substitution to avoid generating temp >>> files. Does StandAloneBlastPlus support this? If yes, would you please >>> how me what command to use? >>> >>> blastn -query <(echo >>> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >>> -subject <(echo >>> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >>> >>> >>> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>>> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >>>> BlastPlus.pm >>>> Then to parse the results, you can read this: >>>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>>> Florent >>>> >>>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>>> >>>>> There is a module to run blast remotely >>>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>>> I think that it makes more sense for me to run blast locally. Is there >>>>> a way to let bioperl parse the output from my local command line >>>>> blast? >>>>> >>>>> >>>> >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 17:10:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 16:10:05 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> On Jun 6, 2010, at 1:29 PM, Dave Messina wrote: > > On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > >> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? >> >> We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? > > To anwer my own question, yes: > > http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob > > I copied the Perl script to here: > http://gist.github.com/427769 > > > If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. > > Dave For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: http://progit.org/book/ch7-2.html chris From David.Messina at sbc.su.se Sun Jun 6 17:27:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 23:27:50 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> Message-ID: > For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: > > http://progit.org/book/ch7-2.html Thanks for the pointer. Yeah, agreed on the date. The .gitattributes setup sounds good, particularly since it's automatic. Dave From pengyu.ut at gmail.com Sun Jun 6 18:29:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:29:39 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? Message-ID: There are many classes defined in Bio::Search, which is confusing to new users. Is there an inherentance graph and a dependency graph to help new users understand how they work? http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm For example, Bio::Search::HSP::GenericHSP is an implementation of Bio::Search::HSP::HSPI (if I'm correct), which is documented in the text. But I feel it would be much easier to see this relationship, if this is drawn graphically. -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 18:52:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:52:18 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? Message-ID: The following perl program generate tmp files at the current directory, which is annoying. Is there a way to put the tmp files in a tmp directory say /tmp? #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first.fa'); my $seq2 = Bio::Perl::read_sequence('second.fa'); print $seq1->seq, "\n"; print $seq2->seq, "\n"; my $blast_result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); -- Regards, Peng From David.Messina at sbc.su.se Sun Jun 6 19:18:28 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:18:28 +0200 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: Our class diagram is way out of date, but I believe the SearchIO part is still basically the same. http://www.bioperl.org/wiki/Class_Diagram > But I feel it would be much easier to see this relationship, if > this is drawn graphically. Absolutely. Speaking of which, this has long been on our to-do list ? would you be interested in taking a crack at this? There's also the Deobfuscator, which allows you to see all of the methods available to an object, regardless of how far up the inheritance tree the method originates: http://www.bioperl.org/wiki/Deobfuscator Dave From cjfields at illinois.edu Sun Jun 6 19:23:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:23:44 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: <13884F06-106A-4D1B-A4EB-B2AF23ACA400@illinois.edu> Peng, Within Bio::Search, the hierarchy is easy enough. I'll leave out the full namespace for now to make this easier. Each ResultI object represents a single report; it may have multiple HitI objects (the hits), which further have multiple HSPI objects (the high-scoring paired alignments). Depending on the parser and the need for additional methods, each ResultI/HitI/HSPI may be implemented generically (GenericResult/Hit/HSP) or more specifically (e.g. ModelHit), but all observe the common interface (ResultI/HitI/HSPI) methods. So, you can hierarchically iterate through all the data in a report as follows: while (my $result = $in->next_result) { # grab ResultI stuff here while (my $hit = $result->next_hit) { # grab HitI stuff here while (my $hsp = $hit->next_hsp) { # grab HSPI stuff here } } } Much of this is already in the HOWTO. Not sure how much more we can explain to you via email. If you are really concerned about the objects returned to look up specific methods, just check them with ref() to get the class. Re: module usage: the module usage and inheritance graph for BioPerl is extremely complicated, but if you have a checkout of the git repo you can generate some of these using the (completely unsupported, don't ask for help :) module_usage.pl script in the maintenance folder. I agree a simple graphic might help; feel free to contribute one if you have the time. chris On Jun 6, 2010, at 5:29 PM, Peng Yu wrote: > There are many classes defined in Bio::Search, which is confusing to > new users. Is there an inherentance graph and a dependency graph to > help new users understand how they work? > > http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm > > For example, Bio::Search::HSP::GenericHSP is an implementation of > Bio::Search::HSP::HSPI (if I'm correct), which is documented in the > text. But I feel it would be much easier to see this relationship, if > this is drawn graphically. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 19:32:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:32:57 +0200 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <2696B150-4993-4844-8FBB-A6A59944BE47@sbc.su.se> > Is there a way to put the tmp files in a > tmp directory say /tmp? Hmm, that probably shouldn't be happening. And indeed, BioPerl modules use File::Temp, which creates temp files in /tmp (or the equivalent). It's possible that it's a side effect of using Bio::Perl, which is composed of convenience methods for the beginner and is not really intended for serious use. For that reason, it may be writing in the current directory to minimize the possibility of write permissions errors which could be hard for a beginner to deal with. But that's only a guess. If you use Bio::SeqIO directly instead of read_seq and write_seq, and if you're still seeing temp files in your current directory, please let us know. Dave From cjfields at illinois.edu Sun Jun 6 19:37:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:37:32 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): Cleaning up temp files Temporary analysis files produced under a single factory instances can be unlinked by running $fac->cleanup; Tempfiles are generally not removed unless this method is explicitly called. "cleanup()" only unlinks "registered" files and databases. All temporary files are automatically registered; in particular, "anonymous" databases (such as $fac->Bio::Tools::Run::StandAloneBlastPlus->new( -db_data => 'myseqs.fas', -create => 1 ); without a "-db_name" specification) are registered for cleanup. Any file or database can be registered with an internal method: $fac->_register_temp_for_cleanup('testdb'); chris On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > The following perl program generate tmp files at the current > directory, which is annoying. Is there a way to put the tmp files in a > tmp directory say /tmp? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first.fa'); > my $seq2 = Bio::Perl::read_sequence('second.fa'); > print $seq1->seq, "\n"; > print $seq2->seq, "\n"; > > my $blast_result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sun Jun 6 20:33:59 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 19:33:59 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Chris, Sorry if I ask some question that is documented. I'm trying to read as much relevant document as I can, but I can't guarantee read everything that is relevant. I don't understand why "registered" files and databases are relevant for my use case. (BTW, what are "registered" files and what they are for?). I don't specify any database option when I call StandAloneBlastPlus in my example. If I call blast directly, I'll not get any tempfiles. Therefore, it is reasonable to expect not seeing any tempfiles with bioperl module as I understand StandAloneBlastPlus is a wrapper for blast+. What is the purpose of leaving temp files in the current directory? Is it better not to leave any tempfiles in the current directory by default? On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: > Peng, > > You really need to read all relevant documentation prior to firing off emails to the list. ?This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): > > ?Cleaning up temp files > ? ? ? Temporary analysis files produced under a single factory instances can > ? ? ? be unlinked by running > > ? ? ? ?$fac->cleanup; > > ? ? ? Tempfiles are generally not removed unless this method is explicitly > ? ? ? called. "cleanup()" only unlinks "registered" files and databases. All > ? ? ? temporary files are automatically registered; in particular, > ? ? ? "anonymous" databases (such as > > ? ? ? ?$fac->Bio::Tools::Run::StandAloneBlastPlus->new( > ? ? ? ? ?-db_data => 'myseqs.fas', > ? ? ? ? ?-create => 1 > ? ? ? ?); > > ? ? ? without a "-db_name" specification) are registered for cleanup. Any > ? ? ? file or database can be registered with an internal method: > > ? ? ? ?$fac->_register_temp_for_cleanup('testdb'); > > > > chris > > On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > >> The following perl program generate tmp files at the current >> directory, which is annoying. Is there a way to put the tmp files in a >> tmp directory say /tmp? >> >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::Tools::Run::StandAloneBlastPlus; >> use Bio::Perl; >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> my $seq1 = Bio::Perl::read_sequence('first.fa'); >> my $seq2 = Bio::Perl::read_sequence('second.fa'); >> print $seq1->seq, "\n"; >> print $seq2->seq, "\n"; >> >> my $blast_result=$factory->bl2seq(-method=>'blastn', >> ?-query=> $seq1, >> ?-subject=> $seq2 >> ); >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 21:25:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 20:25:50 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? Message-ID: It is not clear to me what is_remote is for in Bio::Location::Simple. Neither the perldoc or the following webpage discuss what it means. http://www.bioperl.org/wiki/BioPerl_Locations $ is_remote/main.pl Use of uninitialized value in print at is_remote/main.pl line 11. $ cat is_remote/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Location::Simple; my $location = Bio::Location::Simple->new(-start => 1, -end => 100, -strand => 1 ); print $location->is_remote(), "\n"; ######## I looked at the source code Simple.pm. I don't see is_remote() is defined in it. Is it deprecate? Should the document for it be removed? -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 23:03:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:03:21 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: On Jun 6, 2010, at 7:33 PM, Peng Yu wrote: > Chris, > > Sorry if I ask some question that is documented. I'm trying to read as > much relevant document as I can, but I can't guarantee read everything > that is relevant. I found the appropriate answer to your question within 2 minutes of reading your post, using a simple ack search (or grep if you prefer) on the StandAloneBlastPlus documentation, then used perldoc as previously mentioned. If you are unwilling to spend 5x that (only 10 minutes), and are unwilling to read the relevant documentation, and are so ready to admit it, why would you expect us to spend our (extremely valuable) time helping you? > I don't understand why "registered" files and databases are relevant > for my use case. (BTW, what are "registered" files and what they are > for?). I don't specify any database option when I call > StandAloneBlastPlus in my example. If I call blast directly, I'll not > get any tempfiles. Therefore, it is reasonable to expect not seeing > any tempfiles with bioperl module as I understand StandAloneBlastPlus > is a wrapper for blast+. What is the purpose of leaving temp files in > the current directory? Is it better not to leave any tempfiles in the > current directory by default? We have provided you an answer. You possibly have a point (why not remove the tempfiles), but you'll have to ask the module author(s) that for their reasoning. You can always make that suggestion, or perhaps even submit a patch, and work around the problem in the meantime. Contribute something constructive. We value that. But your posts at this point come across as rote complaining, not suggestions, and your general lack of appreciation/gratitude for any answers we've already given you does not exactly endear yourself to those whose time is very limited. chris > On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: >> Peng, >> >> You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): >> >> Cleaning up temp files >> Temporary analysis files produced under a single factory instances can >> be unlinked by running >> >> $fac->cleanup; >> >> Tempfiles are generally not removed unless this method is explicitly >> called. "cleanup()" only unlinks "registered" files and databases. All >> temporary files are automatically registered; in particular, >> "anonymous" databases (such as >> >> $fac->Bio::Tools::Run::StandAloneBlastPlus->new( >> -db_data => 'myseqs.fas', >> -create => 1 >> ); >> >> without a "-db_name" specification) are registered for cleanup. Any >> file or database can be registered with an internal method: >> >> $fac->_register_temp_for_cleanup('testdb'); >> >> >> >> chris >> >> On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: >> >>> The following perl program generate tmp files at the current >>> directory, which is annoying. Is there a way to put the tmp files in a >>> tmp directory say /tmp? >>> >>> #!/usr/bin/env perl >>> >>> use strict; >>> use warnings; >>> use Bio::Tools::Run::StandAloneBlastPlus; >>> use Bio::Perl; >>> >>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >>> >>> my $seq1 = Bio::Perl::read_sequence('first.fa'); >>> my $seq2 = Bio::Perl::read_sequence('second.fa'); >>> print $seq1->seq, "\n"; >>> print $seq2->seq, "\n"; >>> >>> my $blast_result=$factory->bl2seq(-method=>'blastn', >>> -query=> $seq1, >>> -subject=> $seq2 >>> ); >>> >>> -- >>> Regards, >>> Peng >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 23:21:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:21:56 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: Message-ID: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > It is not clear to me what is_remote is for in Bio::Location::Simple. > Neither the perldoc or the following webpage discuss what it means. > > http://www.bioperl.org/wiki/BioPerl_Locations As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. Huh. is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). That is one thing that needs additional documentation (see below). > $ is_remote/main.pl > Use of uninitialized value in print at is_remote/main.pl line 11. > $ cat is_remote/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::Location::Simple; > > my $location = Bio::Location::Simple->new(-start => 1, -end => 100, > -strand => 1 ); > > print $location->is_remote(), "\n"; > > ######## > I looked at the source code Simple.pm. I don't see is_remote() is > defined in it. Is it deprecate? Should the document for it be removed? > > -- > Regards, > Peng No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: Title : is_remote Usage : $is_remote_loc = $loc->is_remote() Function: Whether or not a location is a remote location. A location is said to be remote if it is on a different 'object' than the object which 'has' this location. Typically, features on a sequence will sometimes have a remote location, which means that the location of the feature is on a different sequence than the one that is attached to the feature. In such a case, $loc->seq_id will be different from $feat->seq_id (usually they will be the same). While this may sound weird, it reflects the location of the kind of AB18375:450-900 which can be found in GenBank/EMBL feature tables. Example : Returns : TRUE if the location is a remote location, and FALSE otherwise Args : Value to set to chris From pengyu.ut at gmail.com Sun Jun 6 23:46:04 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 22:46:04 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: > On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > >> It is not clear to me what is_remote is for in Bio::Location::Simple. >> Neither the perldoc or the following webpage discuss what it means. >> >> http://www.bioperl.org/wiki/BioPerl_Locations > > As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. ?Huh. > > is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). ?That is one thing that needs additional documentation (see below). > >> $ is_remote/main.pl >> Use of uninitialized value in print at is_remote/main.pl line 11. >> $ cat is_remote/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::Location::Simple; >> >> my $location = Bio::Location::Simple->new(-start => 1, -end => 100, >> ?-strand => 1 ); >> >> print $location->is_remote(), "\n"; >> >> ######## >> I looked at the source code Simple.pm. I don't see is_remote() is >> defined in it. Is it deprecate? Should the document for it be removed? >> >> -- >> Regards, >> Peng > > > No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. > > Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: > > ?Title ? : is_remote > ?Usage ? : $is_remote_loc = $loc->is_remote() > ?Function: Whether or not a location is a remote location. > > ? ? ? ? ? A location is said to be remote if it is on a different > ? ? ? ? ? 'object' than the object which 'has' this > ? ? ? ? ? location. Typically, features on a sequence will sometimes > ? ? ? ? ? have a remote location, which means that the location of > ? ? ? ? ? the feature is on a different sequence than the one that is > ? ? ? ? ? attached to the feature. In such a case, $loc->seq_id will > ? ? ? ? ? be different from $feat->seq_id (usually they will be the > ? ? ? ? ? same). > > ? ? ? ? ? While this may sound weird, it reflects the location of the > ? ? ? ? ? kind of AB18375:450-900 which can be found in GenBank/EMBL > ? ? ? ? ? feature tables. This explain sounds to abstract to me. Would you please give me some examples on what it means? -- Regards, Peng From cjfields at illinois.edu Mon Jun 7 00:46:13 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 23:46:13 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> On Jun 6, 2010, at 10:46 PM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: >> ...No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. >> >> Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: >> >> Title : is_remote >> Usage : $is_remote_loc = $loc->is_remote() >> Function: Whether or not a location is a remote location. >> >> A location is said to be remote if it is on a different >> 'object' than the object which 'has' this >> location. Typically, features on a sequence will sometimes >> have a remote location, which means that the location of >> the feature is on a different sequence than the one that is >> attached to the feature. In such a case, $loc->seq_id will >> be different from $feat->seq_id (usually they will be the >> same). >> >> While this may sound weird, it reflects the location of the >> kind of AB18375:450-900 which can be found in GenBank/EMBL >> feature tables. > > This explain sounds to abstract to me. Would you please give me some > examples on what it means? > > -- > Regards, > Peng Like it says; the Location indicated may not be found in the current location or group of locations, but may be located remotely (in another sequence). For instance: http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank BRCA2 has a split location, one located in this sequence record (AL137247), and one located remotely, in another sequence record (in AL445212.9): join(AL445212.9:83662..166657,101..841) In order to contain both of them together and have them splice correctly when needed, one must indicate that the sequence of interest for the location is not remote (is the current one) or is remote (and needs to be retrieved prior to additional work). chris From pengyu.ut at gmail.com Mon Jun 7 02:04:55 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 01:04:55 -0500 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? Message-ID: I have the following two sequences which don't have any hits. But the perl code gives num_hits =1 (see below). Is it a bug in parsing blast results? $ make blastn -query <(echo CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) -subject <(echo GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > HWI-EAS11X_10097_4_1_1523_15064.txt $ cat first1.fa >first1 CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC $ cat second1.fa >second1 GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG $ cat HWI-EAS11X_10097_4_1_1523_15064.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 ##### But the following code and output shows that there is one hit? $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; use Data::Dumper; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first1.fa'); my $seq2 = Bio::Perl::read_sequence('second1.fa'); my $result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; print 'ref($factory): ', ref($factory), "\n"; print 'ref($result): ', ref($result), "\n"; print "num_hits: ", $result->num_hits, "\n"; while(my $hit = $result->next_hit()) { print ref($hit), "\n"; print Dumper($hit), "\n"; } $ ./main.pl ref($factory): Bio::Tools::Run::StandAloneBlastPlus ref($result): Bio::Search::Result::BlastResult num_hits: 1 Bio::Search::Hit::BlastHit $VAR1 = bless( { '_hsps' => undef, '_iterator' => 0, '_description' => '', '_query_length' => '75', '_accession' => 'second1', '_length' => '75', '_name' => 'second1', '_rank' => 1, '_algorithm' => 'BLASTN', '_root_verbose' => 0, '_hsp_factory' => bless( { 'interface' => 'Bio::Search::HSP::HSPI', 'type' => 'Bio::Search::HSP::GenericHSP', '_loaded_types' => { 'Bio::Search::HSP::GenericHSP' => 1 }, '_root_verbose' => 0 }, 'Bio::Factory::ObjectFactory' ) }, 'Bio::Search::Hit::BlastHit' ); -- Regards, Peng From adsj at novozymes.com Mon Jun 7 11:04:44 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Mon, 07 Jun 2010 17:04:44 +0200 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels Message-ID: <87sk4ynasz.fsf@topper.koldfront.dk> Does an easy way exist to use unicode/utf-8 characters in labels on tracks with Bio::Graphics::Panel? A script like this: = = = #!/usr/bin/perl use strict; use warnings; use utf8; use Bio::Graphics::Panel; use Bio::SeqFeature::Generic; use File::Slurp; my $label='?-glucosidase'; my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); $panel->add_track($feature, -label=>$label); write_file('panel.png', $panel->png); = = = Gives me a panel.png that very much looks like the label was interpreted as something like, say, latin1, which makes sense from a quick search in the GD pod - it refers to stringFT() for using unicode characters, and a quick ack for stringFT() in Bio/Graphics/ only shows hits in DrawTransmembrane. This makes me guess the answer is no, but I thought I'd ask anyway, in case I overlooked something. Best regards, Adam -- Adam Sj?gren adsj at novozymes.com From scott at scottcain.net Mon Jun 7 11:42:28 2010 From: scott at scottcain.net (Scott Cain) Date: Mon, 7 Jun 2010 11:42:28 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Hi Adam, I don't know for sure, but I'm guessing that the reason BioGraphics doesn't use stringFT is because it requires that libgd be compiled with TrueType in order to work, and frequently, libgd isn't compiled with it, and it frequently gives people a hard time getting it compiled, and would add one more barrier to entry to people who want to use BioGraphics and GBrowse. Scott On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > ?Best regards, > > ? ? Adam > > -- > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Adam Sj?gren > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From hlapp at drycafe.net Mon Jun 7 12:14:35 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Mon, 7 Jun 2010 12:14:35 -0400 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> Message-ID: On Jun 7, 2010, at 12:46 AM, Chris Fields wrote: > For instance: > > http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank > > BRCA2 has a split location, one located in this sequence record > (AL137247), and one located remotely, in another sequence record (in > AL445212.9): I guess we should replace the sample (apparently bogus? I thought it was real.) in the doc with this one, so people can be expected to type this in at NCBI and go check it out for themselves. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From lincoln.stein at gmail.com Mon Jun 7 12:14:41 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 7 Jun 2010 12:14:41 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Unfortunately, Bio::Graphics doesn't take advantage of TrueType capabilities in GD. There were too many problems associated with installation. This could be added in some sort of generic fashion (invoke the truetype calls if GD supports it, and fallback to bitmap characters if not), but will require a lot of detailed changes to the source code. If anybody would like to volunteer to do this, I can explain the process. Lincoln On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, > -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > Best regards, > > Adam > > -- > Adam Sj?gren > adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From rondonbio at yahoo.com.br Mon Jun 7 12:33:54 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 09:33:54 -0700 (PDT) Subject: [Bioperl-l] How to do a megablast with Bioperl? Message-ID: <594075.68159.qm@web63705.mail.re1.yahoo.com> Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. thank you Rondon From David.Messina at sbc.su.se Mon Jun 7 13:30:16 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:30:16 +0200 Subject: [Bioperl-l] How to do a megablast with Bioperl? In-Reply-To: <594075.68159.qm@web63705.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> Message-ID: <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> > Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. http://www.bioperl.org/wiki/HOWTO:SearchIO From David.Messina at sbc.su.se Mon Jun 7 13:58:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:58:12 +0200 Subject: [Bioperl-l] Res: How to do a megablast with Bioperl? In-Reply-To: <952808.56069.qm@web63706.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: Hi Rondon, Please keep the list on the Cc so everyone can follow along. > Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From rondonbio at yahoo.com.br Mon Jun 7 14:01:23 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 11:01:23 -0700 (PDT) Subject: [Bioperl-l] Res: Res: How to do a megablast with Bioperl? In-Reply-To: References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: <466678.83185.qm@web63707.mail.re1.yahoo.com> Thank you! Rondon ________________________________ De: Dave Messina Para: Rondon Neto Cc: BioPerl List Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12 Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl? Hi Rondon, Please keep the list on the Cc so everyone can follow along. Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? > Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From armendarez77 at hotmail.com Mon Jun 7 14:27:33 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 11:27:33 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: Hello again, We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Thanks, Veronica > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: cjfields at illinois.edu > Date: Sat, 5 Jun 2010 07:34:34 -0500 > CC: armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > To: David.Messina at sbc.su.se > > Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > chris > > On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > > > Hi Veronica, > > > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > > > > Dave > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From David.Messina at sbc.su.se Mon Jun 7 14:41:00 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 20:41:00 +0200 Subject: [Bioperl-l] Fwd: Bio::Tools::Run::Primer3 vs Web Primer 3 References: Message-ID: <5FF5637B-2248-4E33-9F40-0048D268C7E3@sbc.su.se> On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From pengyu.ut at gmail.com Sun Jun 6 10:04:23 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 09:04:23 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: My perl is installed in a directory in my home. I think that bioperl will be installed in the directory in the perl directory in my home, right? On Sun, Jun 6, 2010 at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? I was confused. Yes, I meant git. I downloaded the files by the following commands. BTW, the following web address better be changed to 'Using_git". http://www.bioperl.org/wiki/Using_Subversion git clone git://github.com/bioperl/bioperl-live.git git clone git://github.com/bioperl/bioperl-run.git >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? I assume that you are asking the Build script. Please see the attachment. Let me know if you mean something else. -- Regards, Peng -------------- next part -------------- A non-text attachment was scrubbed... Name: Build Type: application/octet-stream Size: 1881 bytes Desc: not available URL: From dave at davemessina.com Mon Jun 7 14:33:28 2010 From: dave at davemessina.com (Dave Messina) Date: Mon, 7 Jun 2010 20:33:28 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From jessica.sun at gmail.com Mon Jun 7 15:12:42 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Mon, 7 Jun 2010 15:12:42 -0400 Subject: [Bioperl-l] Get variation included in genbank file Message-ID: Does any know how to include variation(dbSNP) in the genbank file format automatically using NM_ accession number using bioperl? thanks -- Jessica Jingping Sun From jason at bioperl.org Mon Jun 7 15:58:58 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 07 Jun 2010 12:58:58 -0700 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? In-Reply-To: References: Message-ID: <4C0D4F82.1060104@bioperl.org> You always get a hit with BL2Seq with the Query= and Subject= in the report - but you'll notice for your parsed example there are no HSPs. The fact that the bl2seq format reports the subject means you get a hit no matter what. What exactly are you trying to do this seems like a bad example. Just run a BLAST of a query against a database or look at the example reports in the t/data directory if you want to try and parse a BLAST report. If you are using short reads to do alignments to reference sequences you really don't want to be using BLAST anyways. -jason Peng Yu wrote, On 6/6/10 11:04 PM: > I have the following two sequences which don't have any hits. But the > perl code gives num_hits =1 (see below). Is it a bug in parsing blast > results? > > $ make > blastn -query<(echo > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) > -subject<(echo > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > >> HWI-EAS11X_10097_4_1_1523_15064.txt >> > $ cat first1.fa > >> first1 >> > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC > $ cat second1.fa > >> second1 >> > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG > > > $ cat HWI-EAS11X_10097_4_1_1523_15064.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > ***** No hits found ***** > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > ##### > > But the following code and output shows that there is one hit? > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > use Data::Dumper; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first1.fa'); > my $seq2 = Bio::Perl::read_sequence('second1.fa'); > > my $result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > $factory->cleanup; > > print 'ref($factory): ', ref($factory), "\n"; > print 'ref($result): ', ref($result), "\n"; > > print "num_hits: ", $result->num_hits, "\n"; > while(my $hit = $result->next_hit()) { > print ref($hit), "\n"; > print Dumper($hit), "\n"; > } > $ ./main.pl > ref($factory): Bio::Tools::Run::StandAloneBlastPlus > ref($result): Bio::Search::Result::BlastResult > num_hits: 1 > Bio::Search::Hit::BlastHit > $VAR1 = bless( { > '_hsps' => undef, > '_iterator' => 0, > '_description' => '', > '_query_length' => '75', > '_accession' => 'second1', > '_length' => '75', > '_name' => 'second1', > '_rank' => 1, > '_algorithm' => 'BLASTN', > '_root_verbose' => 0, > '_hsp_factory' => bless( { > 'interface' => > 'Bio::Search::HSP::HSPI', > 'type' => > 'Bio::Search::HSP::GenericHSP', > '_loaded_types' => { > > 'Bio::Search::HSP::GenericHSP' => 1 > }, > '_root_verbose' => 0 > }, 'Bio::Factory::ObjectFactory' ) > }, 'Bio::Search::Hit::BlastHit' ); > > > > From armendarez77 at hotmail.com Mon Jun 7 16:32:15 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 13:32:15 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? zlawson at blaze:~/source/bioperl-dev$ git-clone http://github.com/bioperl/bioperl-dev.git Initialized empty Git repository in /home/zlawson/source/bioperl-dev/bioperl-dev/.git/ Getting alternates list for http://github.com/bioperl/bioperl-dev.git Getting pack list for http://github.com/bioperl/bioperl-dev.git Getting index for pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 Getting index for pack f4ab7dabc9b978eefae48bfcbb60adf121d67544 Getting pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 which contains 773d8780bb982f858883cecca28cc45a919755bf error: Unable to get pack file http://github.com/bioperl/bioperl-dev.git/objects/pack/pack-8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767.pack transfer closed with 20247502 bytes remaining to read error: Unable to find 773d8780bb982f858883cecca28cc45a919755bf under http://github.com/bioperl/bioperl-dev.git Cannot obtain needed object 773d8780bb982f858883cecca28cc45a919755bf Thank you, Veronica > From: dave at davemessina.com > Date: Mon, 7 Jun 2010 20:33:28 +0200 > To: armendarez77 at hotmail.com > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > On Jun 7, 2010, at 8:27 PM, wrote: > > > Hello again, > > > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? > > Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: > > http://github.com/bioperl/bioperl-dev > > > Dave > > > > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > From: cjfields at illinois.edu > > > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From David.Messina at sbc.su.se Mon Jun 7 16:38:48 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 22:38:48 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> On Jun 7, 2010, at 10:32 PM, wrote: > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave From David.Messina at sbc.su.se Mon Jun 7 17:18:03 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 23:18:03 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: Message-ID: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Hi Jessica, > Does any know how to include variation(dbSNP) in the genbank file format > automatically using NM_ accession number using bioperl? I'm not sure I understand the question. As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. More information here: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook If that's not what you're after, could you clarify what you want to do? Dave From Russell.Smithies at agresearch.co.nz Mon Jun 7 17:27:51 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 09:27:51 +1200 Subject: [Bioperl-l] new record? In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Is there a class assignment due? I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From jay at jays.net Mon Jun 7 19:38:00 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 7 Jun 2010 18:38:00 -0500 Subject: [Bioperl-l] new record? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Message-ID: <7BEC3D64-7C3E-4F77-898A-103707DEAD3C@jays.net> On Jun 7, 2010, at 4:27 PM, Smithies, Russell wrote: > Is there a class assignment due? > I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) Join us in IRC for some peace and quiet. :) http://bioperl.org/wiki/IRC Jay Hannah Email Haters United Against Icky Email - Eww! http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Mon Jun 7 21:14:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 20:14:50 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? (Bio::Seq::Quality) Message-ID: Hello All, I want to retrieve the original encoded quality string. But it seems that Bio::Seq::Quality has already converted them into numerical array. Is there a method that can help retrieve the original encoded quality string such as "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb"? -- Regards, Peng $ cat main.fastq @HWI-EAS11X_10097:4:1:1909:9532#0/1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC + ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb @HWI-EAS11X_10097:4:1:1948:6460#0/1 CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGAT + dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBBB @HWI-EAS11X_10097:4:1:1986:2311#0/1 CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT + effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL] $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::SeqIO; my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq-illumina'); while (my $seq = $in->next_seq()) { print ref($seq), "\n"; print $seq->qual_text, "\n"; } $ ./main.pl Bio::Seq::Quality 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 25 20 30 12 20 34 Bio::Seq::Quality 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 31 2 2 2 2 2 Bio::Seq::Quality 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 25 29 12 26 12 29 From dimitark at bii.a-star.edu.sg Mon Jun 7 22:02:31 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 10:02:31 +0800 Subject: [Bioperl-l] about blast Message-ID: <4C0DA4B7.9000009@bii.a-star.edu.sg> Hi guys, i stumbled upon a problem. How can i run a psiblast with StandAloneBlastPlus without the query? I mean in normal psiblast there is a possibility that one can actually blast with the option '-in_pssm' instead of query. Of course first you need to run a psiblast with more than one iterations with option '-out_pssm' which produces the file which can be used by '-in_pssm'. Now in BioPerl i removed my query from the options and i got: ---------- MSG: Blast run: query data required, use -query STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::Tools::Run::StandAloneBlastPlus::run /usr/lib64/perl5/site_perl/5.10.0/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:216 ---------- Somehow it would be nice to check the method args in the module and when there is the option '-in_pssm' the check for query should be different(opposite to the one now). I hope i made it clear :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Mon Jun 7 22:59:34 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 14:59:34 +1200 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> A bit hacky and there's probably a "proper" way to do it but this works: while (my $seq = $in->next_dataset()) { print %{$seq}->{'-id'},"\n"; print %{$seq}->{'-raw_quality'},"\n"; print %{$seq}->{'-seq'},"\n"; print join ' ',@{ %{$seq}->{'-qual'}},"\n"; } > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Tuesday, 8 June 2010 1:15 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to print encoded fastq quality string? > (Bio::Seq::Quality) > > Hello All, > > I want to retrieve the original encoded quality string. But it seems > that Bio::Seq::Quality has already converted them into numerical > array. Is there a method that can help retrieve the original encoded > quality string such as > "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L > Tb"? > > -- > Regards, > Peng > > $ cat main.fastq > @HWI-EAS11X_10097:4:1:1909:9532#0/1 > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT > C > + > ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT > b > @HWI-EAS11X_10097:4:1:1948:6460#0/1 > CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA > T > + > dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB > B > @HWI-EAS11X_10097:4:1:1986:2311#0/1 > CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA > T > + > effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL > ] > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::SeqIO; > > my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- > illumina'); > > while (my $seq = $in->next_seq()) { > print ref($seq), "\n"; > print $seq->qual_text, "\n"; > } > $ ./main.pl > Bio::Seq::Quality > 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 > 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 > 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 > 25 20 30 12 20 34 > Bio::Seq::Quality > 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 > 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 > 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 > 31 2 2 2 2 2 > Bio::Seq::Quality > 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 > 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 > 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 > 25 29 12 26 12 29 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Mon Jun 7 23:17:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:17:08 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> Message-ID: <1B63775A-EC2A-4BC2-9F4D-47EDEB101B7B@illinois.edu> Yes, this is the way to currently do it from the hash ref, but the actual key/value pairings there may change depending on a few things. I'm probably going to get something started up amongst the various Bio* to see if we can standardize generically parsing this data into somewhat standardized data structures, both for downstream use (creating objects) and other purposes. The current k/v pairs won't change until that happens, but if we manage to come up with some standard I assume we will change them accordingly. chris On Jun 7, 2010, at 9:59 PM, Smithies, Russell wrote: > A bit hacky and there's probably a "proper" way to do it but this works: > > > while (my $seq = $in->next_dataset()) { > print %{$seq}->{'-id'},"\n"; > print %{$seq}->{'-raw_quality'},"\n"; > print %{$seq}->{'-seq'},"\n"; > print join ' ',@{ %{$seq}->{'-qual'}},"\n"; > } > > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Tuesday, 8 June 2010 1:15 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to print encoded fastq quality string? >> (Bio::Seq::Quality) >> >> Hello All, >> >> I want to retrieve the original encoded quality string. But it seems >> that Bio::Seq::Quality has already converted them into numerical >> array. Is there a method that can help retrieve the original encoded >> quality string such as >> "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L >> Tb"? >> >> -- >> Regards, >> Peng >> >> $ cat main.fastq >> @HWI-EAS11X_10097:4:1:1909:9532#0/1 >> CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT >> C >> + >> ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT >> b >> @HWI-EAS11X_10097:4:1:1948:6460#0/1 >> CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA >> T >> + >> dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB >> B >> @HWI-EAS11X_10097:4:1:1986:2311#0/1 >> CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA >> T >> + >> effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL >> ] >> $ cat main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::SeqIO; >> >> my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- >> illumina'); >> >> while (my $seq = $in->next_seq()) { >> print ref($seq), "\n"; >> print $seq->qual_text, "\n"; >> } >> $ ./main.pl >> Bio::Seq::Quality >> 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 >> 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 >> 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 >> 25 20 30 12 20 34 >> Bio::Seq::Quality >> 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 >> 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 >> 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 >> 31 2 2 2 2 2 >> Bio::Seq::Quality >> 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 >> 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 >> 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 >> 25 29 12 26 12 29 >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From dimitark at bii.a-star.edu.sg Mon Jun 7 23:22:04 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 11:22:04 +0800 Subject: [Bioperl-l] more problems with blast Message-ID: <4C0DB75C.6010901@bii.a-star.edu.sg> hi guys, im sorry but i got another problem. So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: ---- MSG: no data for midline Query ------------------------------------------------------------ STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 ---- so there are couple of places where the alignments look like the following (i put here only the problem part): --- Query ------------------------------------------------------------ Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 --- My code for running psiblast: ---- my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); system(@args) == 0 or die "system @args failed: $!"; my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); $blastreport=$report->next_result; ---- Thats not nice :) But how can i go around that stuff so i can get the file parsed? Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From cjfields at illinois.edu Mon Jun 7 23:44:02 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:44:02 -0500 Subject: [Bioperl-l] more problems with blast In-Reply-To: <4C0DB75C.6010901@bii.a-star.edu.sg> References: <4C0DB75C.6010901@bii.a-star.edu.sg> Message-ID: <37AA42E4-1783-47DA-853E-9D8C90FCFE81@illinois.edu> This parsing issue is due to changes in BLAST+, but should be fixed in the latest github code. Can you run a clean checkout and test this? chris On Jun 7, 2010, at 10:22 PM, Dimitar Kenanov wrote: > hi guys, > im sorry but i got another problem. > So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: > ---- > MSG: no data for midline Query ------------------------------------------------------------ > STACK: Error::throw > STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 > STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 > ---- > > so there are couple of places where the alignments look like the following (i put here only the problem part): > --- > Query ------------------------------------------------------------ > > Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 > --- > > My code for running psiblast: > ---- > my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); > system(@args) == 0 or die "system @args failed: $!"; > my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); > $blastreport=$report->next_result; > ---- > > Thats not nice :) But how can i go around that stuff so i can get the file parsed? > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Tue Jun 8 07:35:23 2010 From: jay at jays.net (Jay Hannah) Date: Tue, 8 Jun 2010 06:35:23 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <20100608104921.493F1422B7@smtp1.rs.github.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> Message-ID: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb > http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb > Author: Florent Angly > Date: 2010-06-08 (Tue, 08 Jun 2010) > > Merge branch 'master' of github.com:bioperl/bioperl-live I'm fascinated by these commits, and my git-fu is still weak. I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). Am I reading that correctly? I find that history very confusing. In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). git remote add rkhaja git://github.com/rkhaja/bioperl-live.git git fetch rkhaja git checkout -b rkhaja-merge rkhaja/master git rebase master git checkout master git merge rkhaja-merge git branch -d rkhaja-merge That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. Thanks, Jay Hannah seeker of git enlightenment http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 09:07:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 15:07:29 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276002449.6704.27.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 06:35 -0500, Jay Hannah wrote: > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. Yes, that's just what's happening here. > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. So the question if this is the "better" way of doing things depends on what you're aiming for. At Samba, we have decided in trying to keep the history linear by using the rebase method you outlined above. This is mostly based on the reasoning that nobody cares about our private git trees we have on our development machines. If you're actively developing code in multiple public branches, like e.g. the Linux kernel does, it might be interesting to preserve where these branches split and merge. Personally, I like the readable history the rebasing gives me. Additionally, if you write only a few patches, and pull often, you'll end up with a high "merge commit"/"real commit" ratio, aka "noise". :) Hope this helps, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From cjfields at illinois.edu Tue Jun 8 09:55:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 08:55:51 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 6:35 AM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live > > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. Yes, via git pull. > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? This is probably the best way, sure, to avoid those additional 'Merge branch' messages. The rebase is the key part, which is where one is just setting the current branch pointer to point to the same place as master HEAD. So, what would be the workflow for a simple commit like florent's? Or one from a topic branch? Maybe something to add to the 'Using git' page? > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah I think we all are :> chris From hlapp at drycafe.net Tue Jun 8 11:44:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Tue, 8 Jun 2010 11:44:46 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Tue Jun 8 11:59:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 10:59:24 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <26543D06-6211-498D-A6BE-89E99705074C@illinois.edu> On Jun 8, 2010, at 10:44 AM, Hilmar Lapp wrote: > On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge > > > When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. > > -hilmar Good idea. Also, one of the key distinctions we also need to make clear is how branches differ on svn and git (and why it is easy to branch with git). However, I don't want to necessarily repeat documentation that is better described elsewhere, so maybe a brief explanation of the above with links to Pro Git (http://progit.org/book/) or other resources? Can't recommend that book enough... chris From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 12:25:51 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 18:25:51 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276014351.6704.36.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 11:44 -0400, Hilmar Lapp wrote: > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git This adds rkhaja's github fork of bioperl-live as a remote. You only need to do this once per repository (read "checkout") and remote. If this was a new repository, it now has the "origin" remote pointing to where it was cloned from and the "rkhaja" remote pointing to rkhaja's fork. > > git fetch rkhaja This gets the changes from the rkhaja remote. If you want to keep a lot of different remotes up-to-date, I suggest using git remote update instead, which updates all the remotes. > > git checkout -b rkhaja-merge rkhaja/master This creates a new branch called "rkhaja-merge" based on the "master" branch in the "rkhaja" remote, and changes to that branch. > > git rebase master This basically removes all the patches from the current branch up to the point where it diverged from the "master" branch, forwards the current branch to the tip of the "master" branch and then reapplies all the patches it removed, so they're now on top of the "master" branch. This allows you to do a fast-forward push of them later (read, no need to do a merge commit). > > git checkout master This switches back to the master branch. > > git merge rkhaja-merge This now merges over the changes of the "rkhaja-merge" branch. As all of these changes are on top of the current branch, they can be fast-forwarded to, no merge commit is created. > > git branch -d rkhaja-merge This removes the rkhaja-merge branch, to clean up. git branch -d will refuse to delete a branch that has objects not in your current branch, forcing you to use git br -D instead if you really know what you're doing. > > When this gets adopted and documented, it'd be really great to > annotate each line with what it is motivated by (i.e., why do this), > as otherwise this sequence reads rather obtuse to probably most people > except the fully git initiated. HTH, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From florent.angly at gmail.com Tue Jun 8 19:53:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Wed, 09 Jun 2010 09:53:56 +1000 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <4C0ED814.5070004@gmail.com> For the record, this is what I have been doing: I have my git clone to get my local git repository. I make changes to the BioPerl code, then git commit I make more changes, then git commit Regularly, I do git pull to keep my repository up-to-date Eventually, I git push my changes upstream. I am not too familiar with git but I think this is essentially the easy steps describes on the wiki. If it's better to explicitely make a new branch (not 'master'), let me know. I just don't see the advantage for me. Florent On 06/08/2010 09:35 PM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live >> > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. > > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From pengyu.ut at gmail.com Tue Jun 8 21:00:07 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 20:00:07 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? Message-ID: Hi, I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following command. blastn -task blastn -query first.fa -subject second.fa I tried the following code, which works like without the '-task blastn' option. Would you please let me know how to supply the option in Bio::Tools::Run::StandAloneBlastPlus? my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $result=$factory->bl2seq( -method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; Thank you for you help! -- Regards, Peng From razi.khaja at gmail.com Tue Jun 8 21:18:07 2010 From: razi.khaja at gmail.com (Razi Khaja) Date: Tue, 8 Jun 2010 21:18:07 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <4C0ED814.5070004@gmail.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> <4C0ED814.5070004@gmail.com> Message-ID: This is awesome! Looks like my contributions became a topic of conversation overnight. Razi On Tue, Jun 8, 2010 at 7:53 PM, Florent Angly wrote: > For the record, this is what I have been doing: > I have my git clone to get my local git repository. > I make changes to the BioPerl code, then git commit > I make more changes, then git commit > Regularly, I do git pull to keep my repository up-to-date > Eventually, I git push my changes upstream. > > I am not too familiar with git but I think this is essentially the easy > steps describes on the wiki. If it's better to explicitely make a new branch > (not 'master'), let me know. I just don't see the advantage for me. > > Florent > > > > On 06/08/2010 09:35 PM, Jay Hannah wrote: > >> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> >> >>> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >>> >>> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >>> Author: Florent Angly >>> Date: 2010-06-08 (Tue, 08 Jun 2010) >>> >>> Merge branch 'master' of github.com:bioperl/bioperl-live >>> >>> >> I'm fascinated by these commits, and my git-fu is still weak. >> >> I think what's happening here is that any time anyone commits anything >> fangly is merging those changes into his own repo, which he then merges back >> to bioperl/bioperl-live again. >> >> So fangly's procedure (whatever it is), is re-committing other people's >> commits? Making history twice as long with (empty?) "Merge branch 'master'" >> messages? The diff of these commits reports that fangly is the author of >> other people's changes(!) yet somehow git annotate still reports that >> t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday >> (correct). >> >> Am I reading that correctly? I find that history very confusing. >> >> In #moose they taught me to merge other people's commits using the >> procedure below. This is what I did yesterday to merge rkhaja/bioperl-live >> into bioperl/bioperl-live (per conversations in IRC). >> >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge >> >> That procedure did not create a "Merge branch 'master'" commit. So is that >> procedure cleaner than fangly's? Is it the rebase command that makes the >> difference? >> >> I'm not picking on fangly here, I'm simply struggling to improve my own >> git-fu. >> >> Thanks, >> >> Jay Hannah >> seeker of git enlightenment >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 8 21:28:03 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 13:28:03 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Have you read the docs? http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Wednesday, 9 June 2010 1:00 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > Hi, > > I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > command. > > blastn -task blastn -query first.fa -subject second.fa > > > I tried the following code, which works like without the '-task > blastn' option. Would you please let me know how to supply the option > in Bio::Tools::Run::StandAloneBlastPlus? > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > my $result=$factory->bl2seq( > -method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > $factory->cleanup; > > Thank you for you help! > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 8 22:20:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 21:20:39 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell wrote: > Have you read the docs? > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Yes. But they don't say how to supply option '-task blastn' to blastn. I tried my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); But it doesn't work. > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > --Russell > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> Hi, >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> command. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> I tried the following code, which works like without the '-task >> blastn' option. Would you please let me know how to supply the option >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> ? my $result=$factory->bl2seq( >> ? ? -method=>'blastn', >> ? ? -query=> $seq1, >> ? ? -subject=> $seq2 >> ? ); >> ? $factory->cleanup; >> >> Thank you for you help! >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:09:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:09:33 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Why are you trying to supply option '-task blastn' ?? I think the docs make it fairly clear that this is not one of the available parameters. The option " -method => 'blastn' " (as detailed in the docs) is the one to use. http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html # create a factory: $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); # do a bl2seq $fac->bl2seq( -method => 'blastn', -query => $seq_object_1, -subject => $seq_object_2 ); Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 2:21 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > wrote: > > Have you read the docs? > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > > Yes. But they don't say how to supply option '-task blastn' to blastn. I > tried > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); > > But it doesn't work. > > > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > > I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > > > --Russell > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> To: bioperl-l at lists.open-bio.org > >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> Hi, > >> > >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > >> command. > >> > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> > >> I tried the following code, which works like without the '-task > >> blastn' option. Would you please let me know how to supply the option > >> in Bio::Tools::Run::StandAloneBlastPlus? > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> ? my $result=$factory->bl2seq( > >> ? ? -method=>'blastn', > >> ? ? -query=> $seq1, > >> ? ? -subject=> $seq2 > >> ? ); > >> ? $factory->cleanup; > >> > >> Thank you for you help! > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:12:12 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:12:12 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: See the help page of blastn. By default blastn use the option "-task megablast", which is less sensitive than the option "-task blastn". $ blastn -help .... -task Task to execute Default = `megablast' ... On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell wrote: > Why are you trying to supply option '-task blastn' ?? > I think the docs make it fairly clear that this is not one of the available parameters. > The option " -method => 'blastn' " (as detailed in the docs) is the one to use. > http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > # create a factory: > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > # do a bl2seq > ?$fac->bl2seq( -method => 'blastn', > ? ? ? ? ? ? ? -query => $seq_object_1, > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. > > --Russell > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> wrote: >> > Have you read the docs? >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. I >> tried >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); >> >> But it doesn't work. >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. >> >> > --Russell >> > >> >> -----Original Message----- >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> To: bioperl-l at lists.open-bio.org >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> Hi, >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> >> command. >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> blastn' option. Would you please let me know how to supply the option >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> ? my $result=$factory->bl2seq( >> >> ? ? -method=>'blastn', >> >> ? ? -query=> $seq1, >> >> ? ? -subject=> $seq2 >> >> ? ); >> >> ? $factory->cleanup; >> >> >> >> Thank you for you help! >> >> >> >> -- >> >> Regards, >> >> Peng >> >> _______________________________________________ >> >> Bioperl-l mailing list >> >> Bioperl-l at lists.open-bio.org >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > ======================================================================= >> > Attention: The information contained in this message and/or attachments >> > from AgResearch Limited is intended only for the persons or entities >> > to which it is addressed and may contain confidential and/or privileged >> > material. Any review, retransmission, dissemination or other use of, or >> > taking of any action in reliance upon, this information by persons or >> > entities other than the intended recipients is prohibited by AgResearch >> > Limited. If you have received this message in error, please notify the >> > sender immediately. >> > ======================================================================= >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:31:54 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:31:54 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:12 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > See the help page of blastn. By default blastn use the option "-task > megablast", which is less sensitive than the option "-task blastn". > > $ blastn -help > .... > -task 'megablast' 'vecscreen' > > Task to execute > Default = `megablast' > ... > > On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > wrote: > > Why are you trying to supply option '-task blastn' ?? > > I think the docs make it fairly clear that this is not one of the > available parameters. > > The option " -method => 'blastn' " (as detailed in the docs) is the one > to use. > > http://doc.bioperl.org/releases/bioperl-current/bioperl- > run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > > > # create a factory: > > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > > > # do a bl2seq > > ?$fac->bl2seq( -method => 'blastn', > > ? ? ? ? ? ? ? -query => $seq_object_1, > > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is > completely broken (which is possible as it's development code) something > similar to the example should work. > > > > --Russell > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> wrote: > >> > Have you read the docs? > >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> > >> Yes. But they don't say how to supply option '-task blastn' to blastn. > I > >> tried > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > task='blastn'); > >> > >> But it doesn't work. > >> > >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > >> > >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > problem. > >> > >> > --Russell > >> > > >> >> -----Original Message----- > >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> To: bioperl-l at lists.open-bio.org > >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> Hi, > >> >> > >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > following > >> >> command. > >> >> > >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> > >> >> > >> >> I tried the following code, which works like without the '-task > >> >> blastn' option. Would you please let me know how to supply the > option > >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> ? my $result=$factory->bl2seq( > >> >> ? ? -method=>'blastn', > >> >> ? ? -query=> $seq1, > >> >> ? ? -subject=> $seq2 > >> >> ? ); > >> >> ? $factory->cleanup; > >> >> > >> >> Thank you for you help! > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> >> _______________________________________________ > >> >> Bioperl-l mailing list > >> >> Bioperl-l at lists.open-bio.org > >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > ======================================================================= > >> > Attention: The information contained in this message and/or > attachments > >> > from AgResearch Limited is intended only for the persons or entities > >> > to which it is addressed and may contain confidential and/or > privileged > >> > material. Any review, retransmission, dissemination or other use of, > or > >> > taking of any action in reliance upon, this information by persons or > >> > entities other than the intended recipients is prohibited by > AgResearch > >> > Limited. If you have received this message in error, please notify > the > >> > sender immediately. > >> > > ======================================================================= > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Tue Jun 8 23:36:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:36:50 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: I made a wrapper. Then I call bl2seq in bioperl. The result changes, which means bioperl call blastn rather than bl2seq in the command line. The results are consistent between bioperl and blastn command line. $ cat `which blastn` #!/usr/bin/env bash /myinstallation/blastn -task blastn $@ On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell wrote: > Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) > > If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? > When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " > > > > --Russell > > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> See the help page of blastn. By default blastn use the option "-task >> megablast", which is less sensitive than the option "-task blastn". >> >> $ blastn -help >> .... >> ?-task > ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> ? ? ?Task to execute >> ? ? ?Default = `megablast' >> ... >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> wrote: >> > Why are you trying to supply option '-task blastn' ?? >> > I think the docs make it fairly clear that this is not one of the >> available parameters. >> > The option " -method => 'blastn' " (as detailed in the docs) is the one >> to use. >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> > >> > # create a factory: >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> > >> > # do a bl2seq >> > ?$fac->bl2seq( -method => 'blastn', >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is >> completely broken (which is possible as it's development code) something >> similar to the example should work. >> > >> > --Russell >> > >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> To: Smithies, Russell >> >> Cc: bioperl-l at lists.open-bio.org >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> wrote: >> >> > Have you read the docs? >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. >> I >> >> tried >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> task='blastn'); >> >> >> >> But it doesn't work. >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my >> problem. >> >> >> >> > --Russell >> >> > >> >> >> -----Original Message----- >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> Hi, >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the >> following >> >> >> command. >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> >> blastn' option. Would you please let me know how to supply the >> option >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> ? my $result=$factory->bl2seq( >> >> >> ? ? -method=>'blastn', >> >> >> ? ? -query=> $seq1, >> >> >> ? ? -subject=> $seq2 >> >> >> ? ); >> >> >> ? $factory->cleanup; >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> >> _______________________________________________ >> >> >> Bioperl-l mailing list >> >> >> Bioperl-l at lists.open-bio.org >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > >> ======================================================================= >> >> > Attention: The information contained in this message and/or >> attachments >> >> > from AgResearch Limited is intended only for the persons or entities >> >> > to which it is addressed and may contain confidential and/or >> privileged >> >> > material. Any review, retransmission, dissemination or other use of, >> or >> >> > taking of any action in reliance upon, this information by persons or >> >> > entities other than the intended recipients is prohibited by >> AgResearch >> >> > Limited. If you have received this message in error, please notify >> the >> >> > sender immediately. >> >> > >> ======================================================================= >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:47:25 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:47:25 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> I really think you need to spend more time reading and less time emailing. http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 The BLAST+ package includes the ability to compare two or more sequences to each other in each of the search programs. Using the -subject option instead of the -db will cause any of the search programs to behave as a BLAST 2 sequences program. This eliminates the need for the BLAST 2 sequences utility (bl2seq) included in the traditional BLAST package. While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a wrapper as there's no longer a bl2seq executable as there was with the older version of BLAST. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:37 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I made a wrapper. Then I call bl2seq in bioperl. The result changes, > which means bioperl call blastn rather than bl2seq in the command > line. The results are consistent between bioperl and blastn command > line. > > $ cat `which blastn` > #!/usr/bin/env bash > > /myinstallation/blastn -task blastn $@ > > > On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > wrote: > > Without digging thru the code, I think the developer can call the > parameters whatever he likes and if he wants to use "-method " instead of > "-task " there's probably a good reason (right MAJ?) > > > > If you write code as in the docs, does it give you the same results as > when you run bl2seq manually from the command line? > > When you run it via BioPerl, does " -method => 'blastn' " give you a > different result to " -method => 'megablast' " or " -method => 'dc- > megablast' " > > > > > > > > --Russell > > > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> See the help page of blastn. By default blastn use the option "-task > >> megablast", which is less sensitive than the option "-task blastn". > >> > >> $ blastn -help > >> .... > >> ?-task megablast' > >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> ? ? ?Task to execute > >> ? ? ?Default = `megablast' > >> ... > >> > >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> wrote: > >> > Why are you trying to supply option '-task blastn' ?? > >> > I think the docs make it fairly clear that this is not one of the > >> available parameters. > >> > The option " -method => 'blastn' " (as detailed in the docs) is the > one > >> to use. > >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> > > >> > # create a factory: > >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> > > >> > # do a bl2seq > >> > ?$fac->bl2seq( -method => 'blastn', > >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> > > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus > is > >> completely broken (which is possible as it's development code) > something > >> similar to the example should work. > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> wrote: > >> >> > Have you read the docs? > >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> > >> >> Yes. But they don't say how to supply option '-task blastn' to > blastn. > >> I > >> >> tried > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> task='blastn'); > >> >> > >> >> But it doesn't work. > >> >> > >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > objects? > >> >> > >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> problem. > >> >> > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option > from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> Hi, > >> >> >> > >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> following > >> >> >> command. > >> >> >> > >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> > >> >> >> > >> >> >> I tried the following code, which works like without the '-task > >> >> >> blastn' option. Would you please let me know how to supply the > >> option > >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> ? my $result=$factory->bl2seq( > >> >> >> ? ? -method=>'blastn', > >> >> >> ? ? -query=> $seq1, > >> >> >> ? ? -subject=> $seq2 > >> >> >> ? ); > >> >> >> ? $factory->cleanup; > >> >> >> > >> >> >> Thank you for you help! > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> >> _______________________________________________ > >> >> >> Bioperl-l mailing list > >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> > > >> ======================================================================= > >> >> > Attention: The information contained in this message and/or > >> attachments > >> >> > from AgResearch Limited is intended only for the persons or > entities > >> >> > to which it is addressed and may contain confidential and/or > >> privileged > >> >> > material. Any review, retransmission, dissemination or other use > of, > >> or > >> >> > taking of any action in reliance upon, this information by persons > or > >> >> > entities other than the intended recipients is prohibited by > >> AgResearch > >> >> > Limited. If you have received this message in error, please notify > >> the > >> >> > sender immediately. > >> >> > > >> ======================================================================= > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Tue Jun 8 23:58:09 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:58:09 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> I've lost track of what your main problem is, please restate your original question? I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or what part of the documentation is incorrect? --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:53 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I knew this I should use blastn as bl2seq command is not available in > BLAST+. I'm not sure what you think I should read? > > On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > wrote: > > I really think you need to spend more time reading and less time > emailing. > > > > http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > > The BLAST+ package includes the ability to compare two or more sequences > to each other in each of the search programs. Using the -subject ?option > instead of the -db will cause any of the search programs to behave as a > BLAST 2 sequences program. This eliminates the need for the BLAST 2 > sequences utility (bl2seq) included in the traditional BLAST package. > > > > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a > wrapper as there's no longer a bl2seq executable as there was with the > older version of BLAST. > > > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I made a wrapper. Then I call bl2seq in bioperl. The result changes, > >> which means bioperl call blastn rather than bl2seq in the command > >> line. The results are consistent between bioperl and blastn command > >> line. > >> > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> wrote: > >> > Without digging thru the code, I think the developer can call the > >> parameters whatever he likes and if he wants to use "-method " instead > of > >> "-task " there's probably a good reason (right MAJ?) > >> > > >> > If you write code as in the docs, does it give you the same results > as > >> when you run bl2seq manually from the command line? > >> > When you run it via BioPerl, does " -method => 'blastn' " give you a > >> different result to " -method => 'megablast' " or " -method => 'dc- > >> megablast' " > >> > > >> > > >> > > >> > --Russell > >> > > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> See the help page of blastn. By default blastn use the option "-task > >> >> megablast", which is less sensitive than the option "-task blastn". > >> >> > >> >> $ blastn -help > >> >> .... > >> >> ?-task >> megablast' > >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> ? ? ?Task to execute > >> >> ? ? ?Default = `megablast' > >> >> ... > >> >> > >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> wrote: > >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> > I think the docs make it fairly clear that this is not one of the > >> >> available parameters. > >> >> > The option " -method => 'blastn' " (as detailed in the docs) is > the > >> one > >> >> to use. > >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> > > >> >> > # create a factory: > >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> > > >> >> > # do a bl2seq > >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> > > >> >> > Unless I've missed something and > Bio::Tools::Run::StandAloneBlastPlus > >> is > >> >> completely broken (which is possible as it's development code) > >> something > >> >> similar to the example should work. > >> >> > > >> >> > --Russell > >> >> > > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Have you read the docs? > >> >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> > >> >> >> Yes. But they don't say how to supply option '-task blastn' to > >> blastn. > >> >> I > >> >> >> tried > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> task='blastn'); > >> >> >> > >> >> >> But it doesn't work. > >> >> >> > >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > >> objects? > >> >> >> > >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> >> problem. > >> >> >> > >> >> >> > --Russell > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > option > >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> Hi, > >> >> >> >> > >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> >> following > >> >> >> >> command. > >> >> >> >> > >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> > >> >> >> >> > >> >> >> >> I tried the following code, which works like without the '- > task > >> >> >> >> blastn' option. Would you please let me know how to supply the > >> >> option > >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> ? ); > >> >> >> >> ? $factory->cleanup; > >> >> >> >> > >> >> >> >> Thank you for you help! > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> >> _______________________________________________ > >> >> >> >> Bioperl-l mailing list > >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> > > >> >> > ======================================================================= > >> >> >> > Attention: The information contained in this message and/or > >> >> attachments > >> >> >> > from AgResearch Limited is intended only for the persons or > >> entities > >> >> >> > to which it is addressed and may contain confidential and/or > >> >> privileged > >> >> >> > material. Any review, retransmission, dissemination or other > use > >> of, > >> >> or > >> >> >> > taking of any action in reliance upon, this information by > persons > >> or > >> >> >> > entities other than the intended recipients is prohibited by > >> >> AgResearch > >> >> >> > Limited. If you have received this message in error, please > notify > >> >> the > >> >> >> > sender immediately. > >> >> >> > > >> >> > ======================================================================= > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 00:10:46 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 16:10:46 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 4:10 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I think it is better to document the mapping between blast options and > bioperl options. I searched 'task', but I don't find anything. Thank > you for letting me know. > > On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell > wrote: > > Bioperl's equivalent is blastn -task blastn -query first.fa -subject > second.fa > > We've just used 'method' instead of 'task'. > > > > You can always use the legacy_blast.pl script that comes with blast+ > then you can just use your old bl2seq commands. > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 4:03 p.m. > >> To: Smithies, Russell > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I've solved my problem by using the wrapper. Note that this is a hack > >> as it is not done in bioperl. > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> Anyway, I restate my original problem below. > >> > >> bioperl's bl2seq by default is equivalent to the following command. > >> blastn -query first.fa -subject second.fa > >> > >> I want to add the option '-task blastn'. > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> But I don't find such option in bioperl's bl2seq. > >> > >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell > >> wrote: > >> > I've lost track of what your main problem is, please restate your > >> original question? > >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or > what > >> part of the documentation is incorrect? > >> > > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. > >> >> To: Smithies, Russell > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> I knew this I should use blastn as bl2seq command is not available > in > >> >> BLAST+. I'm not sure what you think I should read? > >> >> > >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > >> >> wrote: > >> >> > I really think you need to spend more time reading and less time > >> >> emailing. > >> >> > > >> >> > > >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > >> >> > The BLAST+ package includes the ability to compare two or more > >> sequences > >> >> to each other in each of the search programs. Using the -subject > >> ?option > >> >> instead of the -db will cause any of the search programs to behave > as a > >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 > >> >> sequences utility (bl2seq) included in the traditional BLAST > package. > >> >> > > >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just > a > >> >> wrapper as there's no longer a bl2seq executable as there was with > the > >> >> older version of BLAST. > >> >> > > >> >> > > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result > changes, > >> >> >> which means bioperl call blastn rather than bl2seq in the command > >> >> >> line. The results are consistent between bioperl and blastn > command > >> >> >> line. > >> >> >> > >> >> >> $ cat `which blastn` > >> >> >> #!/usr/bin/env bash > >> >> >> > >> >> >> /myinstallation/blastn -task blastn $@ > >> >> >> > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Without digging thru the code, I think the developer can call > the > >> >> >> parameters whatever he likes and if he wants to use "-method " > >> instead > >> >> of > >> >> >> "-task " there's probably a good reason (right MAJ?) > >> >> >> > > >> >> >> > If you write code as in the docs, does it give you the same > >> results > >> >> as > >> >> >> when you run bl2seq manually from the command line? > >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give > you > >> a > >> >> >> different result to " -method => 'megablast' " or " -method => > 'dc- > >> >> >> megablast' " > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > --Russell > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> >> >> To: Smithies, Russell > >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > >> option > >> >> >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> See the help page of blastn. By default blastn use the option > "- > >> task > >> >> >> >> megablast", which is less sensitive than the option "-task > >> blastn". > >> >> >> >> > >> >> >> >> $ blastn -help > >> >> >> >> .... > >> >> >> >> ?-task 'dc- > >> >> >> megablast' > >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> >> >> ? ? ?Task to execute > >> >> >> >> ? ? ?Default = `megablast' > >> >> >> >> ... > >> >> >> >> > >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> >> >> wrote: > >> >> >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> >> >> > I think the docs make it fairly clear that this is not one > of > >> the > >> >> >> >> available parameters. > >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) > is > >> >> the > >> >> >> one > >> >> >> >> to use. > >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> >> >> > > >> >> >> >> > # create a factory: > >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> > > >> >> >> >> > # do a bl2seq > >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> >> >> > > >> >> >> >> > Unless I've missed something and > >> >> Bio::Tools::Run::StandAloneBlastPlus > >> >> >> is > >> >> >> >> completely broken (which is possible as it's development code) > >> >> >> something > >> >> >> >> similar to the example should work. > >> >> >> >> > > >> >> >> >> > --Russell > >> >> >> >> > > >> >> >> >> > > >> >> >> >> >> -----Original Message----- > >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> >> >> To: Smithies, Russell > >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task > blastn > >> >> option > >> >> >> >> from > >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> > >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> >> >> wrote: > >> >> >> >> >> > Have you read the docs? > >> >> >> >> >> > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> >> >> > >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' > to > >> >> >> blastn. > >> >> >> >> I > >> >> >> >> >> tried > >> >> >> >> >> > >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> >> >> task='blastn'); > >> >> >> >> >> > >> >> >> >> >> But it doesn't work. > >> >> >> >> >> > >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be > Bio::Seq > >> >> >> objects? > >> >> >> >> >> > >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is > not > >> my > >> >> >> >> problem. > >> >> >> >> >> > >> >> >> >> >> > --Russell > >> >> >> >> >> > > >> >> >> >> >> >> -----Original Message----- > >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl- > >> l- > >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > >> >> option > >> >> >> from > >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> Hi, > >> >> >> >> >> >> > >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to > run > >> the > >> >> >> >> following > >> >> >> >> >> >> command. > >> >> >> >> >> >> > >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> I tried the following code, which works like without the > '- > >> >> task > >> >> >> >> >> >> blastn' option. Would you please let me know how to > supply > >> the > >> >> >> >> option > >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- > >new(); > >> >> >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> >> >> ? ); > >> >> >> >> >> >> ? $factory->cleanup; > >> >> >> >> >> >> > >> >> >> >> >> >> Thank you for you help! > >> >> >> >> >> >> > >> >> >> >> >> >> -- > >> >> >> >> >> >> Regards, > >> >> >> >> >> >> Peng > >> >> >> >> >> >> _______________________________________________ > >> >> >> >> >> >> Bioperl-l mailing list > >> >> >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > Attention: The information contained in this message > and/or > >> >> >> >> attachments > >> >> >> >> >> > from AgResearch Limited is intended only for the persons > or > >> >> >> entities > >> >> >> >> >> > to which it is addressed and may contain confidential > and/or > >> >> >> >> privileged > >> >> >> >> >> > material. Any review, retransmission, dissemination or > other > >> >> use > >> >> >> of, > >> >> >> >> or > >> >> >> >> >> > taking of any action in reliance upon, this information > by > >> >> persons > >> >> >> or > >> >> >> >> >> > entities other than the intended recipients is prohibited > by > >> >> >> >> AgResearch > >> >> >> >> >> > Limited. If you have received this message in error, > please > >> >> notify > >> >> >> >> the > >> >> >> >> >> > sender immediately. > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> -- > >> >> >> >> >> Regards, > >> >> >> >> >> Peng > >> >> >> >> > > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From armendarez77 at hotmail.com Wed Jun 9 08:38:24 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Wed, 9 Jun 2010 05:38:24 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? Thanks again, Veronica Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 From: David.Messina at sbc.su.se Date: Mon, 7 Jun 2010 22:38:48 +0200 CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org To: armendarez77 at hotmail.com On Jun 7, 2010, at 10:32 PM, wrote:Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From cjfields at illinois.edu Wed Jun 9 08:44:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 07:44:54 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: <7A526D4B-AED6-4957-B2F3-CA22D5578BAB@illinois.edu> I'm thinking of releasing it separately as a focused package (wrappers, parsers and all). That way it's not reliant on releases of BioPerl for updates. chris On Jun 9, 2010, at 7:38 AM, wrote: > Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. > > When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? > > Thanks again, > > Veronica > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: David.Messina at sbc.su.se > Date: Mon, 7 Jun 2010 22:38:48 +0200 > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > To: armendarez77 at hotmail.com > > > On Jun 7, 2010, at 10:32 PM, wrote: > > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? > > No, it should be git://github.com/bioperl/bioperl-dev.git > > On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. > > Dave > > > Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. Learn more. From pengyu.ut at gmail.com Wed Jun 9 10:51:31 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 9 Jun 2010 09:51:31 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: My original code use -method=>'blastn' as Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent to blast+'s command line option -task blastn. On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell wrote: > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 4:10 p.m. >> To: Smithies, Russell >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> I think it is better to document the mapping between blast options and >> bioperl options. I searched 'task', but I don't find anything. Thank >> you for letting me know. >> >> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >> wrote: >> > Bioperl's equivalent is blastn -task blastn -query first.fa -subject >> second.fa >> > We've just used 'method' instead of 'task'. >> > >> > You can always use the legacy_blast.pl script that comes with blast+ >> then you can just use your old bl2seq commands. >> > >> > --Russell >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 4:03 p.m. >> >> To: Smithies, Russell >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> I've solved my problem by using the wrapper. Note that this is a hack >> >> as it is not done in bioperl. >> >> $ cat `which blastn` >> >> #!/usr/bin/env bash >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> Anyway, I restate my original problem below. >> >> >> >> bioperl's bl2seq by default is equivalent to the following command. >> >> blastn -query first.fa -subject second.fa >> >> >> >> I want to add the option '-task blastn'. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> But I don't find such option in bioperl's bl2seq. >> >> >> >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >> >> wrote: >> >> > I've lost track of what your main problem is, please restate your >> >> original question? >> >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >> what >> >> part of the documentation is incorrect? >> >> > >> >> > >> >> > --Russell >> >> > >> >> > >> >> >> -----Original Message----- >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. >> >> >> To: Smithies, Russell >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> >> from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> I knew this I should use blastn as bl2seq command is not available >> in >> >> >> BLAST+. I'm not sure what you think I should read? >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >> >> >> wrote: >> >> >> > I really think you need to spend more time reading and less time >> >> >> emailing. >> >> >> > >> >> >> > >> >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >> >> >> > The BLAST+ package includes the ability to compare two or more >> >> sequences >> >> >> to each other in each of the search programs. Using the -subject >> >> ?option >> >> >> instead of the -db will cause any of the search programs to behave >> as a >> >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >> >> >> sequences utility (bl2seq) included in the traditional BLAST >> package. >> >> >> > >> >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >> a >> >> >> wrapper as there's no longer a bl2seq executable as there was with >> the >> >> >> older version of BLAST. >> >> >> > >> >> >> > >> >> >> > --Russell >> >> >> > >> >> >> >> -----Original Message----- >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. >> >> >> >> To: Smithies, Russell >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> option >> >> >> from >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result >> changes, >> >> >> >> which means bioperl call blastn rather than bl2seq in the command >> >> >> >> line. The results are consistent between bioperl and blastn >> command >> >> >> >> line. >> >> >> >> >> >> >> >> $ cat `which blastn` >> >> >> >> #!/usr/bin/env bash >> >> >> >> >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >> >> >> >> wrote: >> >> >> >> > Without digging thru the code, I think the developer can call >> the >> >> >> >> parameters whatever he likes and if he wants to use "-method " >> >> instead >> >> >> of >> >> >> >> "-task " there's probably a good reason (right MAJ?) >> >> >> >> > >> >> >> >> > If you write code as in the docs, does it give you the same >> >> results >> >> >> as >> >> >> >> when you run bl2seq manually from the command line? >> >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give >> you >> >> a >> >> >> >> different result to " -method => 'megablast' " or " -method => >> 'dc- >> >> >> >> megablast' " >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > --Russell >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> >> -----Original Message----- >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> >> option >> >> >> >> from >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> See the help page of blastn. By default blastn use the option >> "- >> >> task >> >> >> >> >> megablast", which is less sensitive than the option "-task >> >> blastn". >> >> >> >> >> >> >> >> >> >> $ blastn -help >> >> >> >> >> .... >> >> >> >> >> ?-task > 'dc- >> >> >> >> megablast' >> >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> >> >> >> >> ? ? ?Task to execute >> >> >> >> >> ? ? ?Default = `megablast' >> >> >> >> >> ... >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> >> >> >> >> wrote: >> >> >> >> >> > Why are you trying to supply option '-task blastn' ?? >> >> >> >> >> > I think the docs make it fairly clear that this is not one >> of >> >> the >> >> >> >> >> available parameters. >> >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) >> is >> >> >> the >> >> >> >> one >> >> >> >> >> to use. >> >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> >> >> >> >> > >> >> >> >> >> > # create a factory: >> >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> >> >> > >> >> >> >> >> > # do a bl2seq >> >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', >> >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> >> >> >> >> > >> >> >> >> >> > Unless I've missed something and >> >> >> Bio::Tools::Run::StandAloneBlastPlus >> >> >> >> is >> >> >> >> >> completely broken (which is possible as it's development code) >> >> >> >> something >> >> >> >> >> similar to the example should work. >> >> >> >> >> > >> >> >> >> >> > --Russell >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task >> blastn >> >> >> option >> >> >> >> >> from >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> >> >> >> >> wrote: >> >> >> >> >> >> > Have you read the docs? >> >> >> >> >> >> > >> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> >> >> >> >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' >> to >> >> >> >> blastn. >> >> >> >> >> I >> >> >> >> >> >> tried >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> >> >> >> >> task='blastn'); >> >> >> >> >> >> >> >> >> >> >> >> But it doesn't work. >> >> >> >> >> >> >> >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be >> Bio::Seq >> >> >> >> objects? >> >> >> >> >> >> >> >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is >> not >> >> my >> >> >> >> >> problem. >> >> >> >> >> >> >> >> >> >> >> >> > --Russell >> >> >> >> >> >> > >> >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org >> [mailto:bioperl- >> >> l- >> >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn >> >> >> option >> >> >> >> from >> >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> Hi, >> >> >> >> >> >> >> >> >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to >> run >> >> the >> >> >> >> >> following >> >> >> >> >> >> >> command. >> >> >> >> >> >> >> >> >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the >> '- >> >> >> task >> >> >> >> >> >> >> blastn' option. Would you please let me know how to >> supply >> >> the >> >> >> >> >> option >> >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >> >new(); >> >> >> >> >> >> >> ? my $result=$factory->bl2seq( >> >> >> >> >> >> >> ? ? -method=>'blastn', >> >> >> >> >> >> >> ? ? -query=> $seq1, >> >> >> >> >> >> >> ? ? -subject=> $seq2 >> >> >> >> >> >> >> ? ); >> >> >> >> >> >> >> ? $factory->cleanup; >> >> >> >> >> >> >> >> >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> >> Regards, >> >> >> >> >> >> >> Peng >> >> >> >> >> >> >> _______________________________________________ >> >> >> >> >> >> >> Bioperl-l mailing list >> >> >> >> >> >> >> Bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > Attention: The information contained in this message >> and/or >> >> >> >> >> attachments >> >> >> >> >> >> > from AgResearch Limited is intended only for the persons >> or >> >> >> >> entities >> >> >> >> >> >> > to which it is addressed and may contain confidential >> and/or >> >> >> >> >> privileged >> >> >> >> >> >> > material. Any review, retransmission, dissemination or >> other >> >> >> use >> >> >> >> of, >> >> >> >> >> or >> >> >> >> >> >> > taking of any action in reliance upon, this information >> by >> >> >> persons >> >> >> >> or >> >> >> >> >> >> > entities other than the intended recipients is prohibited >> by >> >> >> >> >> AgResearch >> >> >> >> >> >> > Limited. If you have received this message in error, >> please >> >> >> notify >> >> >> >> >> the >> >> >> >> >> >> > sender immediately. >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> Regards, >> >> >> >> >> >> Peng >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> Regards, >> >> >> >> >> Peng >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> Regards, >> >> >> >> Peng >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Regards, Peng From cjfields at illinois.edu Wed Jun 9 10:57:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 09:57:17 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: <1BE50888-A4BE-4DCB-AC53-6C6BC5529EF0@illinois.edu> Peng, If you think this is a bug, can you submit it to bugzilla? It's very possible it's implemented but I'm not completely familiar with the code yet (though I will be very soon!). Mark could also probably answer most of these questions but I think he's been pretty busy as of late, but I can probably take a look. chris On Jun 9, 2010, at 9:51 AM, Peng Yu wrote: > My original code use -method=>'blastn' as > Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent > to blast+'s command line option -task blastn. > > > On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell > wrote: >> >> >>> -----Original Message----- >>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>> Sent: Wednesday, 9 June 2010 4:10 p.m. >>> To: Smithies, Russell >>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >>> Bio::Tools::Run::StandAloneBlastPlus? >>> >>> I think it is better to document the mapping between blast options and >>> bioperl options. I searched 'task', but I don't find anything. Thank >>> you for letting me know. >>> >>> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >>> wrote: >>>> Bioperl's equivalent is blastn -task blastn -query first.fa -subject >>> second.fa >>>> We've just used 'method' instead of 'task'. >>>> >>>> You can always use the legacy_blast.pl script that comes with blast+ >>> then you can just use your old bl2seq commands. >>>> >>>> --Russell >>>> >>>>> -----Original Message----- >>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>> Sent: Wednesday, 9 June 2010 4:03 p.m. >>>>> To: Smithies, Russell >>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>> from >>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>> >>>>> I've solved my problem by using the wrapper. Note that this is a hack >>>>> as it is not done in bioperl. >>>>> $ cat `which blastn` >>>>> #!/usr/bin/env bash >>>>> >>>>> /myinstallation/blastn -task blastn $@ >>>>> >>>>> >>>>> Anyway, I restate my original problem below. >>>>> >>>>> bioperl's bl2seq by default is equivalent to the following command. >>>>> blastn -query first.fa -subject second.fa >>>>> >>>>> I want to add the option '-task blastn'. >>>>> blastn -task blastn -query first.fa -subject second.fa >>>>> >>>>> But I don't find such option in bioperl's bl2seq. >>>>> >>>>> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >>>>> wrote: >>>>>> I've lost track of what your main problem is, please restate your >>>>> original question? >>>>>> I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >>> what >>>>> part of the documentation is incorrect? >>>>>> >>>>>> >>>>>> --Russell >>>>>> >>>>>> >>>>>>> -----Original Message----- >>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>> Sent: Wednesday, 9 June 2010 3:53 p.m. >>>>>>> To: Smithies, Russell >>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>>>> from >>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>> >>>>>>> I knew this I should use blastn as bl2seq command is not available >>> in >>>>>>> BLAST+. I'm not sure what you think I should read? >>>>>>> >>>>>>> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >>>>>>> wrote: >>>>>>>> I really think you need to spend more time reading and less time >>>>>>> emailing. >>>>>>>> >>>>>>>> >>>>> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >>>>>>>> The BLAST+ package includes the ability to compare two or more >>>>> sequences >>>>>>> to each other in each of the search programs. Using the -subject >>>>> option >>>>>>> instead of the -db will cause any of the search programs to behave >>> as a >>>>>>> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >>>>>>> sequences utility (bl2seq) included in the traditional BLAST >>> package. >>>>>>>> >>>>>>>> While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >>> a >>>>>>> wrapper as there's no longer a bl2seq executable as there was with >>> the >>>>>>> older version of BLAST. >>>>>>>> >>>>>>>> >>>>>>>> --Russell >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>> Sent: Wednesday, 9 June 2010 3:37 p.m. >>>>>>>>> To: Smithies, Russell >>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>> option >>>>>>> from >>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>> >>>>>>>>> I made a wrapper. Then I call bl2seq in bioperl. The result >>> changes, >>>>>>>>> which means bioperl call blastn rather than bl2seq in the command >>>>>>>>> line. The results are consistent between bioperl and blastn >>> command >>>>>>>>> line. >>>>>>>>> >>>>>>>>> $ cat `which blastn` >>>>>>>>> #!/usr/bin/env bash >>>>>>>>> >>>>>>>>> /myinstallation/blastn -task blastn $@ >>>>>>>>> >>>>>>>>> >>>>>>>>> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >>>>>>>>> wrote: >>>>>>>>>> Without digging thru the code, I think the developer can call >>> the >>>>>>>>> parameters whatever he likes and if he wants to use "-method " >>>>> instead >>>>>>> of >>>>>>>>> "-task " there's probably a good reason (right MAJ?) >>>>>>>>>> >>>>>>>>>> If you write code as in the docs, does it give you the same >>>>> results >>>>>>> as >>>>>>>>> when you run bl2seq manually from the command line? >>>>>>>>>> When you run it via BioPerl, does " -method => 'blastn' " give >>> you >>>>> a >>>>>>>>> different result to " -method => 'megablast' " or " -method => >>> 'dc- >>>>>>>>> megablast' " >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> --Russell >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> -----Original Message----- >>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>> Sent: Wednesday, 9 June 2010 3:12 p.m. >>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>>>> option >>>>>>>>> from >>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>> >>>>>>>>>>> See the help page of blastn. By default blastn use the option >>> "- >>>>> task >>>>>>>>>>> megablast", which is less sensitive than the option "-task >>>>> blastn". >>>>>>>>>>> >>>>>>>>>>> $ blastn -help >>>>>>>>>>> .... >>>>>>>>>>> -task >> 'dc- >>>>>>>>> megablast' >>>>>>>>>>> 'megablast' 'vecscreen' > >>>>>>>>>>> Task to execute >>>>>>>>>>> Default = `megablast' >>>>>>>>>>> ... >>>>>>>>>>> >>>>>>>>>>> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >>>>>>>>>>> wrote: >>>>>>>>>>>> Why are you trying to supply option '-task blastn' ?? >>>>>>>>>>>> I think the docs make it fairly clear that this is not one >>> of >>>>> the >>>>>>>>>>> available parameters. >>>>>>>>>>>> The option " -method => 'blastn' " (as detailed in the docs) >>> is >>>>>>> the >>>>>>>>> one >>>>>>>>>>> to use. >>>>>>>>>>>> http://doc.bioperl.org/releases/bioperl-current/bioperl- >>>>>>>>>>> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >>>>>>>>>>>> >>>>>>>>>>>> # create a factory: >>>>>>>>>>>> $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >>>>>>>>>>>> >>>>>>>>>>>> # do a bl2seq >>>>>>>>>>>> $fac->bl2seq( -method => 'blastn', >>>>>>>>>>>> -query => $seq_object_1, >>>>>>>>>>>> -subject => $seq_object_2 ); >>>>>>>>>>>> >>>>>>>>>>>> Unless I've missed something and >>>>>>> Bio::Tools::Run::StandAloneBlastPlus >>>>>>>>> is >>>>>>>>>>> completely broken (which is possible as it's development code) >>>>>>>>> something >>>>>>>>>>> similar to the example should work. >>>>>>>>>>>> >>>>>>>>>>>> --Russell >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 2:21 p.m. >>>>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task >>> blastn >>>>>>> option >>>>>>>>>>> from >>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>> >>>>>>>>>>>>> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >>>>>>>>>>>>> wrote: >>>>>>>>>>>>>> Have you read the docs? >>>>>>>>>>>>>> >>> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >>>>>>>>>>>>> >>>>>>>>>>>>> Yes. But they don't say how to supply option '-task blastn' >>> to >>>>>>>>> blastn. >>>>>>>>>>> I >>>>>>>>>>>>> tried >>>>>>>>>>>>> >>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >>>>>>>>>>> task='blastn'); >>>>>>>>>>>>> >>>>>>>>>>>>> But it doesn't work. >>>>>>>>>>>>> >>>>>>>>>>>>>> Do query and subject ($seq1 and $seq2) need to be >>> Bio::Seq >>>>>>>>> objects? >>>>>>>>>>>>> >>>>>>>>>>>>> I think so. I just get $seq1 and $seq2 from SeqIO. This is >>> not >>>>> my >>>>>>>>>>> problem. >>>>>>>>>>>>> >>>>>>>>>>>>>> --Russell >>>>>>>>>>>>>> >>>>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>>>> From: bioperl-l-bounces at lists.open-bio.org >>> [mailto:bioperl- >>>>> l- >>>>>>>>>>>>>>> bounces at lists.open-bio.org] On Behalf Of Peng Yu >>>>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 1:00 p.m. >>>>>>>>>>>>>>> To: bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> Subject: [Bioperl-l] How to run blastn with -task blastn >>>>>>> option >>>>>>>>> from >>>>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I need to use Bio::Tools::Run::StandAloneBlastPlus to >>> run >>>>> the >>>>>>>>>>> following >>>>>>>>>>>>>>> command. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> blastn -task blastn -query first.fa -subject second.fa >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I tried the following code, which works like without the >>> '- >>>>>>> task >>>>>>>>>>>>>>> blastn' option. Would you please let me know how to >>> supply >>>>> the >>>>>>>>>>> option >>>>>>>>>>>>>>> in Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >>>> new(); >>>>>>>>>>>>>>> my $result=$factory->bl2seq( >>>>>>>>>>>>>>> -method=>'blastn', >>>>>>>>>>>>>>> -query=> $seq1, >>>>>>>>>>>>>>> -subject=> $seq2 >>>>>>>>>>>>>>> ); >>>>>>>>>>>>>>> $factory->cleanup; >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Thank you for you help! >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> -- >>>>>>>>>>>>>>> Regards, >>>>>>>>>>>>>>> Peng >>>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>>> Bioperl-l mailing list >>>>>>>>>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> Attention: The information contained in this message >>> and/or >>>>>>>>>>> attachments >>>>>>>>>>>>>> from AgResearch Limited is intended only for the persons >>> or >>>>>>>>> entities >>>>>>>>>>>>>> to which it is addressed and may contain confidential >>> and/or >>>>>>>>>>> privileged >>>>>>>>>>>>>> material. Any review, retransmission, dissemination or >>> other >>>>>>> use >>>>>>>>> of, >>>>>>>>>>> or >>>>>>>>>>>>>> taking of any action in reliance upon, this information >>> by >>>>>>> persons >>>>>>>>> or >>>>>>>>>>>>>> entities other than the intended recipients is prohibited >>> by >>>>>>>>>>> AgResearch >>>>>>>>>>>>>> Limited. If you have received this message in error, >>> please >>>>>>> notify >>>>>>>>>>> the >>>>>>>>>>>>>> sender immediately. >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> -- >>>>>>>>>>>>> Regards, >>>>>>>>>>>>> Peng >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Regards, >>>>>>>>>>> Peng >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Regards, >>>>>>>>> Peng >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Regards, >>>>>>> Peng >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Regards, >>>>> Peng >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From amackey at virginia.edu Wed Jun 9 10:50:48 2010 From: amackey at virginia.edu (Aaron Mackey) Date: Wed, 9 Jun 2010 10:50:48 -0400 Subject: [Bioperl-l] patch: fix parsing of FASTA results Message-ID: Hopefully someone a bit more git-savvy than me can drop this little ditty in to Bio/SearchIO/fasta.pm? [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 @@ -623,7 +623,7 @@ $_ = $self->_readline(); my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* (?: bits: \s* (\S+) \s+ )? - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; + (?: E|expect ) \s* \((?:\d+)?\) :? \s*(\S+)/ox; $bits = $score unless defined $bits; my $v = shift @hit_signifs; From golharam at gmail.com Wed Jun 9 11:59:01 2010 From: golharam at gmail.com (Ryan) Date: Wed, 9 Jun 2010 08:59:01 -0700 (PDT) Subject: [Bioperl-l] How to determine match type from Bio::Coordinate::GeneMapper Message-ID: <8838cc42-fc66-4b46-bf46-43053333e664@x27g2000yqb.googlegroups.com> Hi - I'm using Bio::Coordinate::GeneMapper to map from CDS to Gene Coordinates. I'm using the example given in the code: # Collection representing exons # cds 1 5 6 10 11 15 # exon 1 5 1 5 1 5 # gene 1 5 11 15 21 25 # |---| |---| |---| #-----|-----------------------|---|-- # chr 1 5 9 15 19 25 29 # pair1 pair2 pair3 If I map cds(1-5) -> gene(1-5), the first 5 bases of the cds map to the first 5 bases of the gene, as expected. my $cds_pos = Bio::Location::Simple->new(-start => 1, -end => 5, - strand => 1); my $gen_pos = $m->map($cds_pos); is ($gen_pos->start, 1); is ($gen_pos->end, 5); If I map cds(6-11) -> gene(11-21), I get 2 sublocations $cds_pos = Bio::Location::Simple->new(-start => 6, -end => 11, -strand => 1); my $gen_pos_split = $m->map($cds_pos); is ($gen_pos_split->start, 11); is ($gen_pos_split->end, 21); My question is, how do I determine, after mapping, that my result is in ONE consecutive location, or in multiple locations? I can't figure this out from the documentation on Bio::Coordinate::GeneMapper or Bio::Coordinate::Result. From jessica.sun at gmail.com Wed Jun 9 12:28:58 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:28:58 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 12:46:51 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 18:46:51 +0200 Subject: [Bioperl-l] patch: fix parsing of FASTA results In-Reply-To: References: Message-ID: Committed. Tests pass. Thanks, Aaron! Dave On Jun 9, 2010, at 4:50 PM, Aaron Mackey wrote: > Hopefully someone a bit more git-savvy than me can drop this little ditty in > to Bio/SearchIO/fasta.pm? > > [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm > --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 > +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 > @@ -623,7 +623,7 @@ > $_ = $self->_readline(); > my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* > (?: bits: \s* (\S+) \s+ )? > - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; > + (?: E|expect ) \s* \((?:\d+)?\) :? > \s*(\S+)/ox; > $bits = $score unless defined $bits; > > my $v = shift @hit_signifs; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Wed Jun 9 12:30:35 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:30:35 -0400 Subject: [Bioperl-l] Fwd: Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: ---------- Forwarded message ---------- From: Jessica Sun Date: Wed, Jun 9, 2010 at 12:28 PM Subject: Re: [Bioperl-l] Get variation included in genbank file To: Dave Messina Cc: bioperl-l at lists.open-bio.org I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 13:20:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:20:12 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: Hi again Jessica, Forgive my slowness here, but is this what you want to do? 1) Start with an NM_ mRNA record in your example, NM_001110556.1 2) Obtain the corresponding NG_ genomics locus record in Genbank format which would correspond to the example file you attached. Accession number NG_011506 Is that right? There are probably more clever ways to do this, but here's how I would approach it: 1) extract the GeneID dbxref from the NM_ mRNA record using Bio::SeqIO. See http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Features for details. 2) Use that to query the Gene database and get the related NG_ record I don't know exactly what the field name is for the NG_ record, but you can list them all using this example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#What_information_is_available_for_database_.27x.27.3F and figure it out via trial and error. 3) Once you have the NG_ id, you can retrieve the genbank record Here's the relevant example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#Retrieve_raw_data_records_from_GenBank.2C_save_raw_data_to_file.2C_then_parse_via_Bio::SeqIO So, by now it should be obvious that I'm presenting a general strategy. You'll have to do some legwork to get exactly what you want. Good luck, and if you come up with a nice solution, please add it to the wiki! Dave > I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. > > thx > > > On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > > > > -- > Jessica Jingping Sun > From David.Messina at sbc.su.se Wed Jun 9 13:51:25 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:51:25 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Hi Jessica, Please keep the BioPerl list on the Cc line so everyone can follow along. > Follow your approach it did not seem to me you can have Variation tag included which > list the know dbSNP location, id and allele changes? Ah okay, I assumed the file you attached was obtained directly from Genbank and that the variation info therein was already included. (It appears that's not the case ? the variation information is not present in the version of NG_011506 I found at Genbank.) If you want to include your own custom information in a genbank file, you'll have to pull it out of dbSNP (or wherever the variation info is). There are a couple of scripts that might be able to help with that (search for snp): http://www.bioperl.org/wiki/Bioperl_scripts You can then insert them into a RichSeq object as features and output in genbank format. For that part, see the HOWTO: http://www.bioperl.org/wiki/HOWTO:Feature-Annotation Dave From jessica.sun at gmail.com Wed Jun 9 14:37:46 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 14:37:46 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: Thanks Dave. the variation information is not present in the version of NG_011506 I found at Genbank.) -- Yes, then if you click on the right side customer view there is a check box Features added by NCBI :209 snps, if you check that it will add all the variations in the gbk fomat. I found this would be a neat feature if it can automatically load by bioperl with an option turn on. On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > Hi Jessica, > > Please keep the BioPerl list on the Cc line so everyone can follow along. > > > > Follow your approach it did not seem to me you can have Variation tag > included which > > list the know dbSNP location, id and allele changes? > > Ah okay, I assumed the file you attached was obtained directly from Genbank > and that the variation info therein was already included. (It appears that's > not the case ? the variation information is not present in the version of > NG_011506 I found at Genbank.) > > If you want to include your own custom information in a genbank file, > you'll have to pull it out of dbSNP (or wherever the variation info is). > There are a couple of scripts that might be able to help with that (search > for snp): > > http://www.bioperl.org/wiki/Bioperl_scripts > > > You can then insert them into a RichSeq object as features and output in > genbank format. For that part, see the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > > > Dave > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Wed Jun 9 15:08:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 21:08:50 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <088E96F2-E26D-4142-AEB8-A8EFD26DEE68@sbc.su.se> > I found this would be a neat feature if it can automatically load by bioperl with an option turn on. Enhancements of that sort are normally contributed by BioPerl users who have a desire for them. (hint hint :) While I can't promise anything, of course, feel free to submit an enhancement request to our bug tracker: http://bugzilla.open-bio.org/ Dave From cjfields at illinois.edu Wed Jun 9 20:06:42 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 19:06:42 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. #!/usr/bin/perl -w use Modern::Perl; use Bio::DB::EUtilities; my $id = '224809339'; my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', -id => $id, -email => 'setyourown at foo.bar', -verbose => 1, -dbfrom => 'nuccore', -db => 'snp', -cmd => 'neighbor_history', ); my $hist = $eutil->next_History || die "No history data returned"; $eutil->set_parameters(-eutil => 'efetch', -history => $hist, -retmode => 'text', # 'chr', 'flt', 'brief', 'rsr', 'docset' -rettype => 'chr' ); $eutil->get_Response(-file => 'snps.txt'); # or ... $eutil->set_parameters(-eutil => 'esummary', -history => $hist, ); $eutil->print_all; # chris On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > Thanks Dave. > the variation information is not present in the version of NG_011506 I found > at Genbank.) -- Yes, then if you click on the right side customer view there > is a check box Features added by NCBI :209 snps, if you check that it will > add all the variations in the gbk fomat. I found this would be a neat > feature if it can automatically load by bioperl with an option turn on. > > > > On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > >> Hi Jessica, >> >> Please keep the BioPerl list on the Cc line so everyone can follow along. >> >> >>> Follow your approach it did not seem to me you can have Variation tag >> included which >>> list the know dbSNP location, id and allele changes? >> >> Ah okay, I assumed the file you attached was obtained directly from Genbank >> and that the variation info therein was already included. (It appears that's >> not the case ? the variation information is not present in the version of >> NG_011506 I found at Genbank.) >> >> If you want to include your own custom information in a genbank file, >> you'll have to pull it out of dbSNP (or wherever the variation info is). >> There are a couple of scripts that might be able to help with that (search >> for snp): >> >> http://www.bioperl.org/wiki/Bioperl_scripts >> >> >> You can then insert them into a RichSeq object as features and output in >> genbank format. For that part, see the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >> >> >> Dave >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From bimber at wisc.edu Thu Jun 10 09:43:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 08:43:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix Message-ID: hello, a little while ago i posted a bug about commandexts when you pass an array ref. when you pass an arrayref of files, instead of a string with 1 file, you get an error saying 'cannot use string '......' as an array ref while strict refs in place'. i believe i understand the bug, but am not entirely sure the best way to fix it. here's the original code from commandexts.pm, starting line 989: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@files, $_, 1, @{$files[$_]}); splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); } } It throws the error on the second splice(). The reason is b/c $files[$_] isnt an array ref anymore, b/c we just expanded it in the line before. Truthfully, I dont entirely understand why we're expanding out @switches for each file. Maybe i'm missing something obvious, but why would we want these copied? however, there's couple ways around it: 1. save the value of @{$files[$_]} by adding: my @tmp = @{$files[$_]};, then using @tmp on that line 2. put the second splice() before the first 3. if the idea is actually to expand @switches against every file, then move this outside the for loop I originally posted that this could be fixed by surrounding the problem line with 'no strict'/ 'use strict'; however, that really only worked b/c the command I was using did not actually have any switches. I doubt it would work properly if your command had them. -Ben From cjfields at illinois.edu Thu Jun 10 10:58:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 09:58:56 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: Message-ID: On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > hello, > > a little while ago i posted a bug about commandexts when you pass an > array ref. when you pass an arrayref of files, instead of a string > with 1 file, you get an error saying 'cannot use string '......' as an > array ref while strict refs in place'. i believe i understand the > bug, but am not entirely sure the best way to fix it. here's the > original code from commandexts.pm, starting line 989: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@files, $_, 1, @{$files[$_]}); > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > } > } > > It throws the error on the second splice(). The reason is b/c > $files[$_] isnt an array ref anymore, b/c we just expanded it in the > line before. Truthfully, I dont entirely understand why we're > expanding out @switches for each file. Maybe i'm missing something > obvious, but why would we want these copied? Maybe @file and @switches are in-sync and thus need similar expansion? Not sure, personally. > however, there's couple ways around it: > > 1. save the value of @{$files[$_]} by adding: my @tmp = > @{$files[$_]};, then using @tmp on that line > 2. put the second splice() before the first > 3. if the idea is actually to expand @switches against every file, > then move this outside the for loop The first one seems safest. The real question is, do any of these solutions work? Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > I originally posted that this could be fixed by surrounding the > problem line with 'no strict'/ 'use strict'; however, that really only > worked b/c the command I was using did not actually have any switches. > I doubt it would work properly if your command had them. > > -Ben I think, if one of the proposed solutions works, pick which you think is the best and go with it. Test it out, then we can commit this to github. BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. chris From armendarez77 at hotmail.com Thu Jun 10 10:54:18 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 07:54:18 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID Message-ID: Hello, Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a 'Bad Gateway' error. While my system admin is looking into this, I've decided to go another route. Therefore, I've downloaded the NCBI nr database. The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. Thank you, Veronica _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From gopal.cshl at gmail.com Thu Jun 10 12:24:31 2010 From: gopal.cshl at gmail.com (Gopal) Date: Thu, 10 Jun 2010 12:24:31 -0400 Subject: [Bioperl-l] recursion limit reached for a gbk file Message-ID: Hi, I get a error message "Complex regular subexpression recursion limit (32766) exceeded " when I try to parse CDS from a microbial genbank file. Apparently recursion limit is universal and that means, others have somehow overcome this problem. The subroutine that triggers this error is pasted below: (based on "Beginning perl for Bioinformatics" as I am trying to adapt an example in that book for my work) $fh = open_file($library); $offset = tell($fh); while( $record = get_next_record($fh) ) { my $locus=( ); ($annotation, $dna) = get_annotation_and_dna($record); $offset = tell($fh); # Extract the fields of the annotation %fields = parse_annotation($annotation); Sub-routine that triggers the error message: sub parse_annotation { my($annotation) = @_; my(%results) = ( ); while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { my $value = $&; (my $key = $value) =~ s/^([A-Z]+).*/$1/s; $results{$key} = $value; } return %results; } thanks, -gopal From bimber at wisc.edu Thu Jun 10 12:46:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 11:46:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: i suspect this piece of code is seldom encountered. if any existing bioperl wrapper actually tried to pass an arrayref to commandexts, it would hit this same error. i only encountered this using samtools merge. I looked a little more into exactly what @switch is doing. it seems to allow you to supply switches specific to a given file. the bowtie wrapper uses it with paired end data (the first fasta gets a -1 and and second gets a -2). however, i dont see anywhere where this actually applies in a multi-file situation. nonetheless, reversing the order of the two existing splice() (lines 991-992) I think will preserve whatever functionality was there and prevent the error: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); splice(@files, $_, 1, @{$files[$_]}); } } As I write this email and look at the code above a little more, I think that the current approach used to expand these arrayrefs will also break down in other situations, including when the arrayref is not in the last element of the @files array or when 2 arrayrefs are passed. However, it seems that this is barely used and it really depends how much time/thought you want to put into it. -Ben On Thu, Jun 10, 2010 at 9:58 AM, Chris Fields wrote: > On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > >> hello, >> >> a little while ago i posted a bug about commandexts when you pass an >> array ref. ?when you pass an arrayref of files, instead of a string >> with 1 file, you get an error saying 'cannot use string '......' as an >> array ref while strict refs in place'. ?i believe i understand the >> bug, but am not entirely sure the best way to fix it. ?here's the >> original code from commandexts.pm, starting line 989: >> >> ? ?my @files = @args{@specs}; >> ? ?# expand arrayrefs >> ? ?my $l = $#files; >> ? ?for (0..$l) { >> ? ? ? if (ref($files[$_]) eq 'ARRAY') { >> ? ? ? ? ? splice(@files, $_, 1, @{$files[$_]}); >> ? ? ? ? ? splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); >> ? ? ? } >> ? ?} >> >> It throws the error on the second splice(). ?The reason is b/c >> $files[$_] isnt an array ref anymore, b/c we just expanded it in the >> line before. ?Truthfully, I dont entirely understand why we're >> expanding out @switches for each file. ?Maybe i'm missing something >> obvious, but why would we want these copied? > > Maybe @file and @switches are in-sync and thus need similar expansion? ?Not sure, personally. > >> however, there's couple ways around it: >> >> 1. save the value of ?@{$files[$_]} by adding: my @tmp = >> @{$files[$_]};, then using @tmp on that line >> 2. put the second splice() before the first >> 3. if the idea is actually to expand @switches against every file, >> then move this outside the for loop > > The first one seems safest. ?The real question is, do any of these solutions work? ?Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > >> I originally posted that this could be fixed by surrounding the >> problem line with 'no strict'/ 'use strict'; however, that really only >> worked b/c the command I was using did not actually have any switches. >> I doubt it would work properly if your command had them. >> >> -Ben > > I think, if one of the proposed solutions works, pick which you think is the best and go with it. ?Test it out, then we can commit this to github. > > BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From cjfields at illinois.edu Thu Jun 10 13:04:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 12:04:08 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: <6814E5AE-D074-4199-8269-6CDB928EB9DD@illinois.edu> On Jun 10, 2010, at 11:46 AM, Ben Bimber wrote: > i suspect this piece of code is seldom encountered. if any existing > bioperl wrapper actually tried to pass an arrayref to commandexts, it > would hit this same error. i only encountered this using samtools > merge. > > I looked a little more into exactly what @switch is doing. it seems > to allow you to supply switches specific to a given file. the bowtie > wrapper uses it with paired end data (the first fasta gets a -1 and > and second gets a -2). however, i dont see anywhere where this > actually applies in a multi-file situation. nonetheless, reversing > the order of the two existing splice() (lines 991-992) I think will > preserve whatever functionality was there and prevent the error: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > splice(@files, $_, 1, @{$files[$_]}); > } > } > > As I write this email and look at the code above a little more, I > think that the current approach used to expand these arrayrefs will > also break down in other situations, including when the arrayref is > not in the last element of the @files array or when 2 arrayrefs are > passed. However, it seems that this is barely used and it really > depends how much time/thought you want to put into it. > > -Ben It's worth documenting this concern in the code as a comment, particularly if the situation does pop up at some point. Do you want to send a patch in? Or just want us to make the switch in the code directly? chris From chmille4 at gmail.com Thu Jun 10 14:53:15 2010 From: chmille4 at gmail.com (Chase Miller) Date: Thu, 10 Jun 2010 14:53:15 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. Message-ID: Hi all, First off, I hope it's ok to post job openings here. However, I couldn't think of a better place to find some high quality people . As for the postion, The Center for Infection and Immunity at Columbia University has an opening for programmer analyst. If you are interested, check out the link below for more information https://jobs.columbia.edu/applicants/jsp/shared/frameset/Frameset.jsp?time=1276195489164 Thanks, Chase Miller Programmer Analyst The Center for Infection and Immunity Columbia University From David.Messina at sbc.su.se Thu Jun 10 15:39:14 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:39:14 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: Message-ID: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Hi Gopal, This is not a BioPerl question, so this list is really not the place for it. However, here's the first Google hit on your error message, which provides a solution: http://www.perlmonks.org/?node_id=810857 The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? Dave On Jun 10, 2010, at 6:24 PM, Gopal wrote: > Hi, > > I get a error message "Complex regular subexpression recursion limit > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > Apparently recursion limit is universal and that means, > others have somehow overcome this problem. > > The subroutine that triggers this error is pasted below: > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > example in that book for my work) > > > $fh = open_file($library); > > $offset = tell($fh); > > while( $record = get_next_record($fh) ) { > > my $locus=( ); > > ($annotation, $dna) = get_annotation_and_dna($record); > > $offset = tell($fh); > > > > # Extract the fields of the annotation > %fields = parse_annotation($annotation); > > > Sub-routine that triggers the error message: > > > sub parse_annotation { > > my($annotation) = @_; > my(%results) = ( ); > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > my $value = $&; > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > $results{$key} = $value; > } > > return %results; > } > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 15:56:21 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:56:21 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Message-ID: On Jun 10, 2010, at 9:54 PM, Gopal wrote: > Hi Dave, > > thanks for the tip. I saw that and others too. > > In "Beginning Perl for Bioinformatics", such a sub routine that I posted earlier was used for parsing out features etc. of genbank file (chapter 10). > That does not work well, at least with me, when large genbank files with multiple records are used. > > Meanwhile, by avoiding the problem of regex for long strings in a while loop and by parsing information by differently by reducing the > length of the string, I have fixed the problem. The trick was to avoid the hash as that required all of the long string to be stored in $value. > > thanks anyway, > > best > > -gopal > > On Thu, Jun 10, 2010 at 3:39 PM, Dave Messina wrote: > Hi Gopal, > > This is not a BioPerl question, so this list is really not the place for it. > > However, here's the first Google hit on your error message, which provides a solution: > > http://www.perlmonks.org/?node_id=810857 > > The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. > > Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? > > > Dave > > > > On Jun 10, 2010, at 6:24 PM, Gopal wrote: > > > Hi, > > > > I get a error message "Complex regular subexpression recursion limit > > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > > Apparently recursion limit is universal and that means, > > others have somehow overcome this problem. > > > > The subroutine that triggers this error is pasted below: > > > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > > example in that book for my work) > > > > > > $fh = open_file($library); > > > > $offset = tell($fh); > > > > while( $record = get_next_record($fh) ) { > > > > my $locus=( ); > > > > ($annotation, $dna) = get_annotation_and_dna($record); > > > > $offset = tell($fh); > > > > > > > > # Extract the fields of the annotation > > %fields = parse_annotation($annotation); > > > > > > Sub-routine that triggers the error message: > > > > > > sub parse_annotation { > > > > my($annotation) = @_; > > my(%results) = ( ); > > > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > > my $value = $&; > > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > > $results{$key} = $value; > > } > > > > return %results; > > } > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > From David.Messina at sbc.su.se Thu Jun 10 16:00:49 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:00:49 +0200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: Message-ID: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Hi Veronica, These days when you run BLAST at the NCBI server, you're running BLAST+, which is their complete rewrite of (and replacement for) BLAST. You can also download BLAST+ and do pretty much everything on your local machine that you can do on their server, including limit by taxonomy. I think this is the right parameter: http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query Incidentally, BLAST+ has this awesome feature whereby you can, from the command line, run searches remotely on their server against their databases from the command line, just by adding the --remote flag. (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by the way.) Dave On Jun 10, 2010, at 4:54 PM, wrote: > > Hello, > > Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? > > I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a > 'Bad Gateway' error. While my system admin is looking into this, I've > decided to go another route. Therefore, I've downloaded the NCBI nr database. > > The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. > > When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. > > > Thank you, > > Veronica > > > > > _________________________________________________________________ > Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 16:11:27 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:11:27 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Nice, Chris! I've added it to the EUtils cookbook. Dave On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). > > After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. > > #!/usr/bin/perl -w > > use Modern::Perl; > use Bio::DB::EUtilities; > > my $id = '224809339'; > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > -id => $id, > -email => 'setyourown at foo.bar', > -verbose => 1, > -dbfrom => 'nuccore', > -db => 'snp', > -cmd => 'neighbor_history', > ); > > my $hist = $eutil->next_History || die "No history data returned"; > > $eutil->set_parameters(-eutil => 'efetch', > -history => $hist, > -retmode => 'text', > # 'chr', 'flt', 'brief', 'rsr', 'docset' > -rettype => 'chr' > ); > > $eutil->get_Response(-file => 'snps.txt'); > > # or ... > > $eutil->set_parameters(-eutil => 'esummary', > -history => $hist, > ); > > $eutil->print_all; > > # chris > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >> Thanks Dave. >> the variation information is not present in the version of NG_011506 I found >> at Genbank.) -- Yes, then if you click on the right side customer view there >> is a check box Features added by NCBI :209 snps, if you check that it will >> add all the variations in the gbk fomat. I found this would be a neat >> feature if it can automatically load by bioperl with an option turn on. >> >> >> >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: >> >>> Hi Jessica, >>> >>> Please keep the BioPerl list on the Cc line so everyone can follow along. >>> >>> >>>> Follow your approach it did not seem to me you can have Variation tag >>> included which >>>> list the know dbSNP location, id and allele changes? >>> >>> Ah okay, I assumed the file you attached was obtained directly from Genbank >>> and that the variation info therein was already included. (It appears that's >>> not the case ? the variation information is not present in the version of >>> NG_011506 I found at Genbank.) >>> >>> If you want to include your own custom information in a genbank file, >>> you'll have to pull it out of dbSNP (or wherever the variation info is). >>> There are a couple of scripts that might be able to help with that (search >>> for snp): >>> >>> http://www.bioperl.org/wiki/Bioperl_scripts >>> >>> >>> You can then insert them into a RichSeq object as features and output in >>> genbank format. For that part, see the HOWTO: >>> >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>> >>> >>> Dave >>> >>> >> >> >> -- >> Jessica Jingping Sun >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at drycafe.net Thu Jun 10 16:21:28 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Thu, 10 Jun 2010 16:21:28 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. In-Reply-To: References: Message-ID: <6390F20C-9E9A-425E-AB59-33918612B052@drycafe.net> On Jun 10, 2010, at 2:53 PM, Chase Miller wrote: > I hope it's ok to post job openings here. So long as people who program in Perl aren't disqualified from applying :-) -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From shalabh.sharma7 at gmail.com Thu Jun 10 16:40:34 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Thu, 10 Jun 2010 16:40:34 -0400 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: Hi Veronica, You can also download the refseq release catalog. ftp://ftp.ncbi.nih.gov/refseq/release/release-catalog/ It contains all the information like GI and taxaIDs. With the help of a simple script you can parse the required information. Hope this helps. Thanks Shalabh Sharma On Thu, Jun 10, 2010 at 4:00 PM, Dave Messina wrote: > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their databases > from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (-l) > that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy > Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but > not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:11:50 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:11:50 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Eutils will do it with the right query: use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'nucleotide', -term => 'txid9940[Organism:noexp]', -email => 'mymail at foo.bar', -retmax => 1000000); # query hits print "Count = ",$factory->get_count,"\n"; # UIDs my @ids = $factory->get_ids; --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, 11 June 2010 8:01 a.m. > To: armendarez77 at hotmail.com > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > ry > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their > databases from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (- > l) that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a > Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a > Tax Id, but not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > :WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Thu Jun 10 17:35:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 16:35:48 -0500 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: You can get up-to-date files mapping GI to TaxID here (nr and nt): ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ chris On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > Eutils will do it with the right query: > > > > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'nucleotide', > -term => 'txid9940[Organism:noexp]', > -email => 'mymail at foo.bar', > -retmax => 1000000); > > # query hits > print "Count = ",$factory->get_count,"\n"; > # UIDs > my @ids = $factory->get_ids; > > > --Russell > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, 11 June 2010 8:01 a.m. >> To: armendarez77 at hotmail.com >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID >> >> Hi Veronica, >> >> These days when you run BLAST at the NCBI server, you're running BLAST+, >> which is their complete rewrite of (and replacement for) BLAST. >> >> You can also download BLAST+ and do pretty much everything on your local >> machine that you can do on their server, including limit by taxonomy. >> >> I think this is the right parameter: >> >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que >> ry >> >> Incidentally, BLAST+ has this awesome feature whereby you can, from the >> command line, run searches remotely on their server against their >> databases from the command line, just by adding the --remote flag. >> >> >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by >> the way.) >> >> Dave >> >> >> >> On Jun 10, 2010, at 4:54 PM, wrote: >> >>> >>> Hello, >>> >>> Is there a BioPerl method that will give a list of GIs for a specified >> NCBI taxonomy Id? >>> >>> I've previously tried using Urlapi to BLAST primers against the nr >> database on the NCBI server, but recently I keep getting a >>> 'Bad Gateway' error. While my system admin is looking into this, I've >>> decided to go another route. Therefore, I've downloaded the NCBI nr >> database. >>> >>> The problem I've run into is restricting the BLAST against the nr >> database to a subset of sequences. The NCBI Blast tools have an option (- >> l) that does this, but it requires a list of GI's. >>> >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids >> (Entrez Query). Therefore, is there a way to get all GIs within a >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a >> Tax Id, but not the reverse. >>> >>> >>> Thank you, >>> >>> Veronica >>> >>> >>> >>> >>> _________________________________________________________________ >>> Hotmail is redefining busy with tools for the New Busy. Get more from >> your inbox. >>> >> http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON >> :WL:en-US:WM_HMP:042010_2 >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 17:43:55 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:43:55 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> That's the way I usually do it as NCBI/eUtils can be a bit flakey. Not BioPerls fault of course ;-) zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' --Russell > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, 11 June 2010 9:36 a.m. > To: Smithies, Russell > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > bio.org' > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > chris > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > Eutils will do it with the right query: > > > > > > > > > > use Bio::DB::EUtilities; > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > -db => 'nucleotide', > > -term => 'txid9940[Organism:noexp]', > > -email => 'mymail at foo.bar', > > -retmax => 1000000); > > > > # query hits > > print "Count = ",$factory->get_count,"\n"; > > # UIDs > > my @ids = $factory->get_ids; > > > > > > --Russell > > > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > >> Sent: Friday, 11 June 2010 8:01 a.m. > >> To: armendarez77 at hotmail.com > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > >> > >> Hi Veronica, > >> > >> These days when you run BLAST at the NCBI server, you're running > BLAST+, > >> which is their complete rewrite of (and replacement for) BLAST. > >> > >> You can also download BLAST+ and do pretty much everything on your > local > >> machine that you can do on their server, including limit by taxonomy. > >> > >> I think this is the right parameter: > >> > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > >> ry > >> > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > >> command line, run searches remotely on their server against their > >> databases from the command line, just by adding the --remote flag. > >> > >> > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > by > >> the way.) > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 4:54 PM, wrote: > >> > >>> > >>> Hello, > >>> > >>> Is there a BioPerl method that will give a list of GIs for a specified > >> NCBI taxonomy Id? > >>> > >>> I've previously tried using Urlapi to BLAST primers against the nr > >> database on the NCBI server, but recently I keep getting a > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > >> database. > >>> > >>> The problem I've run into is restricting the BLAST against the nr > >> database to a subset of sequences. The NCBI Blast tools have an option > (- > >> l) that does this, but it requires a list of GI's. > >>> > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > >> (Entrez Query). Therefore, is there a way to get all GIs within a > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > a > >> Tax Id, but not the reverse. > >>> > >>> > >>> Thank you, > >>> > >>> Veronica > >>> > >>> > >>> > >>> > >>> _________________________________________________________________ > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > >> your inbox. > >>> > >> > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > >> :WL:en-US:WM_HMP:042010_2 > >>> _______________________________________________ > >>> Bioperl-l mailing list > >>> Bioperl-l at lists.open-bio.org > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Thu Jun 10 21:05:29 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 10 Jun 2010 20:05:29 -0500 Subject: [Bioperl-l] Regulars on IRC - GMT offsets, locations Message-ID: <69077B6F-6C31-4094-AEA8-1446C8DCABBF@jays.net> I added GMT offsets and locations. I didn't have all the info, so I made some of them up. For your correction: http://bioperl.org/wiki/IRC#Regulars_on_IRC ptl is my favorite fake location. :) Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Thu Jun 10 23:27:11 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Thu, 10 Jun 2010 22:27:11 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed Message-ID: Hi, I'm trying to get the pubmed ids from the following link. I use the code pasted at the end of the mail (the output is pasted as well). Note that more ids than necessary are returned. Then I try to use the option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let me know how to get the correct download of the ids in the following page by bioperl EUtilities? http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 -- Regards, Peng $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n"; print $factory->get_Response->content; $ ./main.pl 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 gene 6476 pubmed gene_pubmed 19416921 19121318 17194452 16802690 16543230 16344560 16329100 15944403 15522234 14724820 12477932 11340066 11329013 11003604 10903344 9092938 8609217 8521865 7566098 3925457 3896809 3178143 2962903 1717481 1677636 1560017 1353958 pubmed gene_pubmed_citedinomim 16329100 14724820 14276572 11340066 10903344 8648532 8648527 8609217 8576798 8118103 7371476 6357634 6082247 5848222 5436545 5333958 5075694 5041318 5015965 4952790 4742566 4579420 4164045 3925457 3807985 3553946 3403721 3178143 2962903 1717481 1560017 1353958 1256470 pubmed gene_pubmed_rif 19121318 17194452 16802690 16543230 16329100 15944403 15522234 8521865 From cjfields at illinois.edu Thu Jun 10 23:48:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 22:48:37 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <4DD0E356-4218-4808-B5E5-76D6851DAE82@illinois.edu> Limit the IDs down to a specific dbfrom-db link using -linkname, otherwise it assumes all links and just gloms everything together (yes, pretty helpful of them). Here's the link for those: http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/entrezlinks.html Make sure to use your real email if you aren't already (you'll likely be IP banned otherwise). chris #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -linkname => 'gene_pubmed', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n" On Jun 10, 2010, at 10:27 PM, Peng Yu wrote: > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 23:52:36 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 15:52:36 +1200 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E727@exchsth.agresearch.co.nz> I suspect it's not possible without getting ASN.1 back and parsing that. As you already have a working URL, why not use LWP? use LWP::Simple; my $content = get("http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476") or die $!; my @ids = grep(/\d+<\/Id>/,(split("\n",$content)); --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, 11 June 2010 3:27 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] Error when using EUtilities to download elink with > parameter LinkName=gene_pubmed > > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=g > ene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15 > 522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,86092 > 17,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017 > ,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609 > 217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,507569 > 4,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946, > 3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452, > 16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From armendarez77 at hotmail.com Fri Jun 11 01:08:22 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 22:08:22 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> References: , <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se>, <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz>, , <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> Message-ID: Thank you for all of the choices. The 'zgrep' command works a treat. Veronica > From: Russell.Smithies at agresearch.co.nz > To: cjfields at illinois.edu > CC: David.Messina at sbc.su.se; armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > Date: Fri, 11 Jun 2010 09:43:55 +1200 > Subject: RE: [Bioperl-l] Get GIs from Taxonomy ID > > That's the way I usually do it as NCBI/eUtils can be a bit flakey. > Not BioPerls fault of course ;-) > > zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' > > > > --Russell > > > -----Original Message----- > > From: Chris Fields [mailto:cjfields at illinois.edu] > > Sent: Friday, 11 June 2010 9:36 a.m. > > To: Smithies, Russell > > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > > bio.org' > > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > > > chris > > > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > > > Eutils will do it with the right query: > > > > > > > > > > > > > > > use Bio::DB::EUtilities; > > > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > > -db => 'nucleotide', > > > -term => 'txid9940[Organism:noexp]', > > > -email => 'mymail at foo.bar', > > > -retmax => 1000000); > > > > > > # query hits > > > print "Count = ",$factory->get_count,"\n"; > > > # UIDs > > > my @ids = $factory->get_ids; > > > > > > > > > --Russell > > > > > > > > >> -----Original Message----- > > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > > >> Sent: Friday, 11 June 2010 8:01 a.m. > > >> To: armendarez77 at hotmail.com > > >> Cc: bioperl-l at lists.open-bio.org > > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > >> > > >> Hi Veronica, > > >> > > >> These days when you run BLAST at the NCBI server, you're running > > BLAST+, > > >> which is their complete rewrite of (and replacement for) BLAST. > > >> > > >> You can also download BLAST+ and do pretty much everything on your > > local > > >> machine that you can do on their server, including limit by taxonomy. > > >> > > >> I think this is the right parameter: > > >> > > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > > >> ry > > >> > > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > > >> command line, run searches remotely on their server against their > > >> databases from the command line, just by adding the --remote flag. > > >> > > >> > > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > > by > > >> the way.) > > >> > > >> Dave > > >> > > >> > > >> > > >> On Jun 10, 2010, at 4:54 PM, wrote: > > >> > > >>> > > >>> Hello, > > >>> > > >>> Is there a BioPerl method that will give a list of GIs for a specified > > >> NCBI taxonomy Id? > > >>> > > >>> I've previously tried using Urlapi to BLAST primers against the nr > > >> database on the NCBI server, but recently I keep getting a > > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > > >> database. > > >>> > > >>> The problem I've run into is restricting the BLAST against the nr > > >> database to a subset of sequences. The NCBI Blast tools have an option > > (- > > >> l) that does this, but it requires a list of GI's. > > >>> > > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > > >> (Entrez Query). Therefore, is there a way to get all GIs within a > > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > > a > > >> Tax Id, but not the reverse. > > >>> > > >>> > > >>> Thank you, > > >>> > > >>> Veronica > > >>> > > >>> > > >>> > > >>> > > >>> _________________________________________________________________ > > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > > >> your inbox. > > >>> > > >> > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > > >> :WL:en-US:WM_HMP:042010_2 > > >>> _______________________________________________ > > >>> Bioperl-l mailing list > > >>> Bioperl-l at lists.open-bio.org > > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >> > > >> > > >> _______________________________________________ > > >> Bioperl-l mailing list > > >> Bioperl-l at lists.open-bio.org > > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > ======================================================================= > > > Attention: The information contained in this message and/or attachments > > > from AgResearch Limited is intended only for the persons or entities > > > to which it is addressed and may contain confidential and/or privileged > > > material. Any review, retransmission, dissemination or other use of, or > > > taking of any action in reliance upon, this information by persons or > > > entities other than the intended recipients is prohibited by AgResearch > > > Limited. If you have received this message in error, please notify the > > > sender immediately. > > > ======================================================================= > > > > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy is not the too busy. Combine all your e-mail accounts with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4 From sdavis2 at mail.nih.gov Fri Jun 11 10:36:45 2010 From: sdavis2 at mail.nih.gov (Sean Davis) Date: Fri, 11 Jun 2010 10:36:45 -0400 Subject: [Bioperl-l] [OT] Bioconductor Conference Message-ID: Sorry for the slightly off-topic message, but I think there are plenty of overlapping interests between bioperl and bioconductor. I wanted to announce the upcoming Bioconductor 2010 conference. Besides the email below, if there are questions that I can answer, let me know. Thanks, Sean ------------------- BioC 2010 is coming up quickly, and we urge you to sign up today! We're meeting July 29-30 (Developer Day July 28) in Seattle. There is a terrific line-up of speakers (see below) and the work shops are being finalized (see https://secure.bioconductor.org/BioC2010/labs.php for a preliminary list, subject to change). Also, we have introduced a special 'Flow Cytometery' track. This provides access to the Friday afternoon practicals sessions. These sessions will include, among others, practicals relevant to cytometry. Finally, the deadline for scholarship applications is June 15, just a few days away! Questions? Send email to biocworkshop at fhcrc.org Thursday 8:30 - 9:15 Atul Butte, Stanford Center for Biomedical Informatics Research. Exploring Genomic Medicine Through Integrative Bioinformatics. 9:15 - 10:00 Stephen Friend, SAGE Bionetworks. Risks and Opportunities for Disease Models based on Integrative Genomic Approaches. 10:30 - 11:15 Jay Shendure, University of Washington. Exome sequencing and human genetics. 11:15 - 12:00 To be confirmed. Friday 8:30 - 9:15 Simon Tavar?, University of Southern California. 9:15 - 10:00 Paul Flicek, European Bioinformatics Institute. Generation gap: How existing bioinformatics resources are adapting to high-throughput sequencing. 10:30 - 11:15 Lior Pachter, University of California, Berkeley. 11:15 - 12:00 Simon Anders, European Bioinformatics Institute. Inference of differential signal in high throughput sequencing count data. From jessica.sun at gmail.com Fri Jun 11 12:26:12 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:26:12 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Great ! Yet, how do you add this SNP as an Feature tag named as Variation into the gbk file format automatically? thx On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > Nice, Chris! > > I've added it to the EUtils cookbook. > > Dave > > > > On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > > > It's much easier to work with the GI than the accession. NCBI > unfortunately just recently 'broke' their acc->gi stuff via efetch; you have > to use rettype='seqid' and munge ASN.1 to get everything (though it is nice > in a way for ID mapping). > > > > After the initial step of grabbing the GI for NG_011506, though, you can > use elink to grab the SNP IDs, then use efetch to get the actual SNP files, > or esummary for the summary info. > > > > #!/usr/bin/perl -w > > > > use Modern::Perl; > > use Bio::DB::EUtilities; > > > > my $id = '224809339'; > > > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > > -id => $id, > > -email => 'setyourown at foo.bar', > > -verbose => 1, > > -dbfrom => 'nuccore', > > -db => 'snp', > > -cmd => 'neighbor_history', > > ); > > > > my $hist = $eutil->next_History || die "No history data returned"; > > > > $eutil->set_parameters(-eutil => 'efetch', > > -history => $hist, > > -retmode => 'text', > > # 'chr', 'flt', 'brief', 'rsr', 'docset' > > -rettype => 'chr' > > ); > > > > $eutil->get_Response(-file => 'snps.txt'); > > > > # or ... > > > > $eutil->set_parameters(-eutil => 'esummary', > > -history => $hist, > > ); > > > > $eutil->print_all; > > > > # chris > > > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > > > >> Thanks Dave. > >> the variation information is not present in the version of NG_011506 I > found > >> at Genbank.) -- Yes, then if you click on the right side customer view > there > >> is a check box Features added by NCBI :209 snps, if you check that it > will > >> add all the variations in the gbk fomat. I found this would be a neat > >> feature if it can automatically load by bioperl with an option turn on. > >> > >> > >> > >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >wrote: > >> > >>> Hi Jessica, > >>> > >>> Please keep the BioPerl list on the Cc line so everyone can follow > along. > >>> > >>> > >>>> Follow your approach it did not seem to me you can have Variation tag > >>> included which > >>>> list the know dbSNP location, id and allele changes? > >>> > >>> Ah okay, I assumed the file you attached was obtained directly from > Genbank > >>> and that the variation info therein was already included. (It appears > that's > >>> not the case ? the variation information is not present in the version > of > >>> NG_011506 I found at Genbank.) > >>> > >>> If you want to include your own custom information in a genbank file, > >>> you'll have to pull it out of dbSNP (or wherever the variation info > is). > >>> There are a couple of scripts that might be able to help with that > (search > >>> for snp): > >>> > >>> http://www.bioperl.org/wiki/Bioperl_scripts > >>> > >>> > >>> You can then insert them into a RichSeq object as features and output > in > >>> genbank format. For that part, see the HOWTO: > >>> > >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>> > >>> > >>> Dave > >>> > >>> > >> > >> > >> -- > >> Jessica Jingping Sun > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > -- Jessica Jingping Sun From cjfields at illinois.edu Fri Jun 11 12:30:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 11 Jun 2010 11:30:59 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. chris On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > into the gbk file format automatically? > > thx > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > >> Nice, Chris! >> >> I've added it to the EUtils cookbook. >> >> Dave >> >> >> >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: >> >>> It's much easier to work with the GI than the accession. NCBI >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you have >> to use rettype='seqid' and munge ASN.1 to get everything (though it is nice >> in a way for ID mapping). >>> >>> After the initial step of grabbing the GI for NG_011506, though, you can >> use elink to grab the SNP IDs, then use efetch to get the actual SNP files, >> or esummary for the summary info. >>> >>> #!/usr/bin/perl -w >>> >>> use Modern::Perl; >>> use Bio::DB::EUtilities; >>> >>> my $id = '224809339'; >>> >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', >>> -id => $id, >>> -email => 'setyourown at foo.bar', >>> -verbose => 1, >>> -dbfrom => 'nuccore', >>> -db => 'snp', >>> -cmd => 'neighbor_history', >>> ); >>> >>> my $hist = $eutil->next_History || die "No history data returned"; >>> >>> $eutil->set_parameters(-eutil => 'efetch', >>> -history => $hist, >>> -retmode => 'text', >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' >>> -rettype => 'chr' >>> ); >>> >>> $eutil->get_Response(-file => 'snps.txt'); >>> >>> # or ... >>> >>> $eutil->set_parameters(-eutil => 'esummary', >>> -history => $hist, >>> ); >>> >>> $eutil->print_all; >>> >>> # chris >>> >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: >>> >>>> Thanks Dave. >>>> the variation information is not present in the version of NG_011506 I >> found >>>> at Genbank.) -- Yes, then if you click on the right side customer view >> there >>>> is a check box Features added by NCBI :209 snps, if you check that it >> will >>>> add all the variations in the gbk fomat. I found this would be a neat >>>> feature if it can automatically load by bioperl with an option turn on. >>>> >>>> >>>> >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >> wrote: >>>> >>>>> Hi Jessica, >>>>> >>>>> Please keep the BioPerl list on the Cc line so everyone can follow >> along. >>>>> >>>>> >>>>>> Follow your approach it did not seem to me you can have Variation tag >>>>> included which >>>>>> list the know dbSNP location, id and allele changes? >>>>> >>>>> Ah okay, I assumed the file you attached was obtained directly from >> Genbank >>>>> and that the variation info therein was already included. (It appears >> that's >>>>> not the case ? the variation information is not present in the version >> of >>>>> NG_011506 I found at Genbank.) >>>>> >>>>> If you want to include your own custom information in a genbank file, >>>>> you'll have to pull it out of dbSNP (or wherever the variation info >> is). >>>>> There are a couple of scripts that might be able to help with that >> (search >>>>> for snp): >>>>> >>>>> http://www.bioperl.org/wiki/Bioperl_scripts >>>>> >>>>> >>>>> You can then insert them into a RichSeq object as features and output >> in >>>>> genbank format. For that part, see the HOWTO: >>>>> >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>>>> >>>>> >>>>> Dave >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jessica Jingping Sun >>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Fri Jun 11 12:33:07 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:33:07 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: That was what I thought as well. It will be very nice that it can be done within bioperl as well. On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the > result is either cached or run on-the-fly. When I retrieved the full-length > record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > > > thx > > > > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina >wrote: > > > >> Nice, Chris! > >> > >> I've added it to the EUtils cookbook. > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > >> > >>> It's much easier to work with the GI than the accession. NCBI > >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you > have > >> to use rettype='seqid' and munge ASN.1 to get everything (though it is > nice > >> in a way for ID mapping). > >>> > >>> After the initial step of grabbing the GI for NG_011506, though, you > can > >> use elink to grab the SNP IDs, then use efetch to get the actual SNP > files, > >> or esummary for the summary info. > >>> > >>> #!/usr/bin/perl -w > >>> > >>> use Modern::Perl; > >>> use Bio::DB::EUtilities; > >>> > >>> my $id = '224809339'; > >>> > >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > >>> -id => $id, > >>> -email => 'setyourown at foo.bar', > >>> -verbose => 1, > >>> -dbfrom => 'nuccore', > >>> -db => 'snp', > >>> -cmd => 'neighbor_history', > >>> ); > >>> > >>> my $hist = $eutil->next_History || die "No history data returned"; > >>> > >>> $eutil->set_parameters(-eutil => 'efetch', > >>> -history => $hist, > >>> -retmode => 'text', > >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' > >>> -rettype => 'chr' > >>> ); > >>> > >>> $eutil->get_Response(-file => 'snps.txt'); > >>> > >>> # or ... > >>> > >>> $eutil->set_parameters(-eutil => 'esummary', > >>> -history => $hist, > >>> ); > >>> > >>> $eutil->print_all; > >>> > >>> # chris > >>> > >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >>> > >>>> Thanks Dave. > >>>> the variation information is not present in the version of NG_011506 I > >> found > >>>> at Genbank.) -- Yes, then if you click on the right side customer view > >> there > >>>> is a check box Features added by NCBI :209 snps, if you check that it > >> will > >>>> add all the variations in the gbk fomat. I found this would be a neat > >>>> feature if it can automatically load by bioperl with an option turn > on. > >>>> > >>>> > >>>> > >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >>> wrote: > >>>> > >>>>> Hi Jessica, > >>>>> > >>>>> Please keep the BioPerl list on the Cc line so everyone can follow > >> along. > >>>>> > >>>>> > >>>>>> Follow your approach it did not seem to me you can have Variation > tag > >>>>> included which > >>>>>> list the know dbSNP location, id and allele changes? > >>>>> > >>>>> Ah okay, I assumed the file you attached was obtained directly from > >> Genbank > >>>>> and that the variation info therein was already included. (It appears > >> that's > >>>>> not the case ? the variation information is not present in the > version > >> of > >>>>> NG_011506 I found at Genbank.) > >>>>> > >>>>> If you want to include your own custom information in a genbank file, > >>>>> you'll have to pull it out of dbSNP (or wherever the variation info > >> is). > >>>>> There are a couple of scripts that might be able to help with that > >> (search > >>>>> for snp): > >>>>> > >>>>> http://www.bioperl.org/wiki/Bioperl_scripts > >>>>> > >>>>> > >>>>> You can then insert them into a RichSeq object as features and output > >> in > >>>>> genbank format. For that part, see the HOWTO: > >>>>> > >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>>>> > >>>>> > >>>>> Dave > >>>>> > >>>>> > >>>> > >>>> > >>>> -- > >>>> Jessica Jingping Sun > >>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >> > >> > > > > > > -- > > Jessica Jingping Sun > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Fri Jun 11 17:43:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 11 Jun 2010 23:43:35 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: <2332DA3A-27E0-478A-8FC6-910A9E087BB3@sbc.su.se> On Jun 11, 2010, at 6:33 PM, Jessica Sun wrote: > That was what I thought as well. It will be very nice that it can be done within bioperl as well. Just to clarify, it can be done within BioPerl, but manually. That is, you'll have to take the SNP information you have retrieved using the code Chris posted and then add it as features to the RichSeq object, which is BioPerl's internal representation of a Genbank record. I don't think that this complicated set of procedures would fit very neatly into BioPerl as a more automatic thing, but of course if anyone is interested in coding it up we're more than happy to help find a place for it... Dave > > On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > From ross at cuhk.edu.hk Mon Jun 14 08:48:28 2010 From: ross at cuhk.edu.hk (Ross KK Leung) Date: Mon, 14 Jun 2010 20:48:28 +0800 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> Message-ID: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> If I have an accession number for an mRNA/cDNA/gene (e.g. http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I retrieve the genbank file and parse /dbxref then I may sometimes be able to get some extra information but then the page is not readily usable, e.g. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo rt&list_uids=24377 is there any way to automatically retrieve its upstream & downstream genomic sequence (e.g. 500bp)? From David.Messina at sbc.su.se Mon Jun 14 09:57:30 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 14 Jun 2010 15:57:30 +0200 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <20B7D7C0-137D-4EFB-9E7B-2DB0F5EB6785@sbc.su.se> Hi Ross, The code examples here should work: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#esummary_-.3E_efetch except you'll need to change the seq_start and seq_stop parameters to include your extra bases. i.e. -seq_start => $start + 1 - 500, -seq_stop => $end + 1 + 500, I haven't tested this ? you may need to take the strand information into account when adding or subtracting from the start and end positions. DAve From jay at jays.net Mon Jun 14 12:30:57 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 11:30:57 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() Message-ID: Hola, I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be adding one unless someone points out that this is a bad idea for some reason. Also, this seems insufficient for a branch, so it'll just be a single commit to master unless someone slaps me. Thanks, Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From lincoln.stein at gmail.com Mon Jun 14 12:35:28 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 14 Jun 2010 12:35:28 -0400 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: I suggest that you use Data::Dumper to implement clone (or alternatively Storable's dclone() method). I just had a look at how I did the clone in Lite, and it is a bit fragile if someone subclasses Lite. I also think there is a Clone module in CPAN. Lincoln On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > Hola, > > I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite > has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be > adding one unless someone points out that this is a bad idea for some > reason. > > Also, this seems insufficient for a branch, so it'll just be a single > commit to master unless someone slaps me. > > Thanks, > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From cjfields at illinois.edu Mon Jun 14 12:58:40 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 14 Jun 2010 11:58:40 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: <0BF96232-1390-42CD-9515-06A5D66C3B2E@illinois.edu> Both Data::Dumper and Storable are part of perl core now. I've used Clone.pm w/o problems in some of my code, and wouldn't have a problem adding that as a dependency for bioperl (it's currently listed as a recommended module). chris On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). I just had a look at how I did the clone in > Lite, and it is a bit fragile if someone subclasses Lite. > > I also think there is a Clone module in CPAN. > > Lincoln > > On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > >> Hola, >> >> I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite >> has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be >> adding one unless someone points out that this is a bad idea for some >> reason. >> >> Also, this seems insufficient for a branch, so it'll just be a single >> commit to master unless someone slaps me. >> >> Thanks, >> >> Jay Hannah >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jason at bioperl.org Mon Jun 14 14:48:11 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 14 Jun 2010 14:48:11 -0400 Subject: [Bioperl-l] Script to Calculate Pairwise Ka,Ks In-Reply-To: References: Message-ID: <4C16796B.4090909@bioperl.org> I think you can also just add that clustal dir in your PATH. I'm fwding to bioperl list for help as I don't have time to debug right now, sorry. -jason Haktan Suren wrote, On 6/14/10 1:50 PM: > Dear Jason Stajich, > > First of all, I would like to thank you for the great script that you > wrote. However I wasn't able to run it because it gives me the > fallowing error. I have looked into web but haven't found the solution > yet. I appreciate if you could provide me any kind of help. > > The error is > Could not find the executable for clustalw, make sure you have > installed it and have either set CLUSTALWDIR or it is in your PATH at > kaks2.pl line 108. > For your information, I have downloaded clustalw-2.0.12-macosx.dmg > > from http://www.clustal.org/download/current/ and pointed this > software at the very beginning of the code like > BEGIN { $ENV{CLUSTALDIR} = > '/Users/hsuren/Downloads/BioPerl-1.6.1/Bio/Tools/Run/Alignment/clustalw/clustalw2/' > } > But it still gives me the same error. I am attaching the perl script > as well incase you need. > > > ------------------------------------------------------------------------ > > > Best Regards, > Haktan Suren > From jay at jays.net Mon Jun 14 16:30:05 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 15:30:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). Here's my stab-so-far at using Storable dclone(): http://github.com/bioperl/bioperl-live/tree/topic/jhannah-seqfeature-clone Any and all feedback most welcome. I've never modified Root.pm before. Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From roi.brodo at hotmail.com Wed Jun 16 03:10:45 2010 From: roi.brodo at hotmail.com (Roi Brodo) Date: Wed, 16 Jun 2010 07:10:45 +0000 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA Message-ID: Hello, Suppose I have some circular DNA RefSeq in a Genbank format. I would like to create a new (smaller) Genbank file (both features and sequence) containing only a range of nucleotides from the original file, but a range tha overlaps the "end". For example, if my original Genbank spans 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, 1-100,000), so the new Genbank file will actually contain 300,000 bp from the circular DNA. How can I do that? Again, my input is a Genbank file and output should also be a Gebnank file. Thanks! - Roi _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From roy.chaudhuri at gmail.com Wed Jun 16 06:07:35 2010 From: roy.chaudhuri at gmail.com (Roy Chaudhuri) Date: Wed, 16 Jun 2010 11:07:35 +0100 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA In-Reply-To: References: Message-ID: <4C18A267.4050000@gmail.com> Hi Roi, You need the trunc_with_features and cat methods in Bio::SeqUtils (haven't tested this code but I think it should work): use Bio::SeqIO; use Bio::SeqUtils; my $seq=Bio::SeqIO->new(-file=>$ARGV[0], -format=>'genbank')->next_seq; my $first=Bio::SeqUtils->trunc_with_features($seq, 800000, 1000000); my $second=Bio::SeqUtils->trunc_with_features($seq, 1, 100000); Bio::SeqUtils->cat($first, $second); Bio::SeqIO->new(-format=>'genbank')->write_seq($first); Cheers. Roy. On 16/06/2010 08:10, Roi Brodo wrote: > > Hello, > > > > Suppose I have some circular DNA RefSeq in a Genbank format. I would > like to create a new (smaller) Genbank file (both features and sequence) > containing only a range of nucleotides from the original file, but a > range tha overlaps the "end". For example, if my original Genbank spans > 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, > 1-100,000), so the new Genbank file will actually contain 300,000 bp > from the circular DNA. > > > > How can I do that? Again, my input is a Genbank file and output should > also be a Gebnank file. > > > > Thanks! > > - Roi > > > > > > > > > > > _________________________________________________________________ > The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. > http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From kai.blin at biotech.uni-tuebingen.de Thu Jun 17 04:23:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Thu, 17 Jun 2010 10:23:29 +0200 Subject: [Bioperl-l] Getting the HMMer3 parser integrated into the next BioPerl release, call for testing Message-ID: <1276763009.31442.8.camel@mikropc7.biotech.uni-tuebingen.de> Hi folks, in the past days, I've been working on the tests for the HMMer3 parser, and with my last commits all the tests are passing for all the output files I've seen. So I'd like to propose the bioperl-hmmer3[1] tree to be merged into the main tree for the next BioPerl release. Of course, if there's still some corner cases the parser doesn't handle that you're running into, please send me an output file showing the problem you're seeing, or, even better, send me a patch. :) Cheers, Kai [1] http://github.com/bioperl/bioperl-hmmer3 -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From jun.yin at ucd.ie Thu Jun 17 06:24:50 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 11:24:50 +0100 Subject: [Bioperl-l] Interface of the method Message-ID: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin From tuco at pasteur.fr Thu Jun 17 07:49:18 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 13:49:18 +0200 Subject: [Bioperl-l] Bio module using Moose Message-ID: <4C1A0BBE.3060304@pasteur.fr> Hi guys, I developed some new modules for BioPerl under Bio::Restriction. However, I used Moose to help me out writing code. Do you think I could submit these modules to BioPerl to be later integrated, hopefully, the way they are written (with Moose dependency)? Cheers -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From cjfields at illinois.edu Thu Jun 17 09:12:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 08:12:30 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A0BBE.3060304@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: Emmanuel, I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: http://github.com/cjfields/biome This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. Let me know if you want to go with the first one, I can add you to the project. chris On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > Hi guys, > > I developed some new modules for BioPerl under Bio::Restriction. > However, I used Moose to help me out writing code. > Do you think I could submit these modules to BioPerl to be later > integrated, hopefully, the way they are written (with Moose dependency)? > > Cheers > > -- > ------------------------- > Emmanuel Quevillon > Biological Software and Databases Group > Institut Pasteur > +33 1 44 38 95 98 > tuco at_ pasteur dot fr > ------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Thu Jun 17 09:42:08 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 14:42:08 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <008101cb0e22$e1657230$a4305690$%yin@ucd.ie> BTW, I am a student in the Google Summer of Code 2010. I am currently working on refactoring the Bio::Align subsystem. If you are interested in this project, please visit my coding blog: http://gsoc2010-junyin.blogspot.com/ Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Jun Yin Sent: Thursday, June 17, 2010 11:25 AM To: bioperl-l at lists.open-bio.org Cc: jun.yin at ucd.ie Subject: [Bioperl-l] Interface of the method Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From tuco at pasteur.fr Thu Jun 17 09:46:41 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 15:46:41 +0200 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: <4C1A2741.2080604@pasteur.fr> On 06/17/2010 03:12 PM, Chris Fields wrote: > Emmanuel, > > I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: > > 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > > http://github.com/cjfields/biome > Hi Chris, Yep I've seen it already from one of your email on the Moose list :) I can try plug my modules to your project, however my code might be not as evolved as yours, so it could need some improvements and tuning to run faster and better. > This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > > 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. > Well I don't really know. Let me think about it (between github and CPAN), I'll also need to read and understand carefully your biome project. Moreover, as already said in my previous emails, I am not very ease with Moose right now.... Anyway what I can do it to change my code to better fit with actual implementation of BioPerl 1.6 and send it to the team for later integration? I can also send you my Moosified version to have a look? Let me know Regards Emmanuel > Let me know if you want to go with the first one, I can add you to the project. > > chris > > On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > >> Hi guys, >> >> I developed some new modules for BioPerl under Bio::Restriction. >> However, I used Moose to help me out writing code. >> Do you think I could submit these modules to BioPerl to be later >> integrated, hopefully, the way they are written (with Moose dependency)? >> >> Cheers >> >> -- >> ------------------------- >> Emmanuel Quevillon >> Biological Software and Databases Group >> Institut Pasteur >> +33 1 44 38 95 98 >> tuco at_ pasteur dot fr >> ------------------------- >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From scott at scottcain.net Thu Jun 17 10:55:11 2010 From: scott at scottcain.net (Scott Cain) Date: Thu, 17 Jun 2010 10:55:11 -0400 Subject: [Bioperl-l] GMOD Meeting Announcement: September 13-14 in Cambridge, England Message-ID: Hello, Thanks to the prep work by Gos Micklem at Cambridge, I am pleased to announce that there will be a two day GMOD community meeting starting on Monday Septermber 13 in Cambridge, England. This meeting occurs immediately prior to the Genome Informatics meeting in Hinxton (for which the abstract deadline is June 25). Registration information for this meeting will be available in a few weeks, though I will accept suggestions for presentations now. Please feel free to forward this to colleagues or mailing lists that you think would be interested in this meeting. I look forward to seeing you in England this Fall. Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From russkieknigi at mail.ru Thu Jun 10 19:45:11 2010 From: russkieknigi at mail.ru (=?windows-1251?Q?=C0?=) Date: Fri, 11 Jun 2010 03:45:11 +0400 Subject: [Bioperl-l] =?windows-1251?q?a_possible_issue_in_synopsis_of___Bi?= =?windows-1251?b?b1BlcmwtMS42LjEgID4gIEJpbzo6UmVzdHJpY3Rpb246OkFu?= =?windows-1251?q?alysis?= Message-ID: Hi, An attempt to run synopsis code as is results in the following runtime error: Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. Replacing this: my $enzymes = $ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->unique_cutters), "\n"; with the following code: my $enzymes=$ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed results in an error message-free execution and the output appears reasonable Cheers, Alex From stefan.kirov at bms.com Tue Jun 15 10:39:48 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Tue, 15 Jun 2010 10:39:48 -0400 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <4C1790B4.1090307@bms.com> Try the ensembl API http://www.ensembl.org/info/docs/api/core/core_tutorial.html Cheers, Stefan On 6/14/2010 8:48 AM, Ross KK Leung wrote: > If I have an accession number for an mRNA/cDNA/gene (e.g. > http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I > retrieve the genbank file and parse /dbxref then I may sometimes be able to > get some extra information but then the page is not readily usable, e.g. > > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo > rt&list_uids=24377 > > is there any way to automatically retrieve its upstream& downstream genomic > sequence (e.g. 500bp)? > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From stefan.kirov at bms.com Thu Jun 17 10:53:32 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Thu, 17 Jun 2010 10:53:32 -0400 Subject: [Bioperl-l] Firefox extension project Message-ID: <4C1A36EC.9000204@bms.com> There isn't much about perl in this post, so I apologize for spamming the list, but I assumed there would be people interested in this. Please do not reply to the list, again this is not bioperl related. I have opened sourced a Firefox extension I have been developing and using for a while. The whole idea is to have a sequence analysis swiss army knife built in right in the browser. I started with incorporating some cool Javascript libraries, written by Paul Stothard (http://www.bioinformatics.org/sms2/). I have not incorporated all of those, but will if I find the time. In addition, you can decide to install emboss and clustalw (the extension comes with the source for clustal and emboss) and run them locally, which can be handy. I have started working also on SVG biograph libraries but these are quite incomplete, but I have been able to implement one graphical viewer- ORF finder, which I find quite handy. There are basic sequence parsing and fetching (NCBI) as well. Other things that work: very simple logical operations on sets, protein digest/ion generation tool. Sequence lists and projects should be functional in next release. There are 2 way to access the tools: right click and by opening the sidebar. The code behind this project is mainly Javascript, XUL, CSS and shell wrapper scripts. There is also some sqlite involved. I would be interested to hear any feedback, but would be even more excited if there are people who know these technologies (or willing to learn) and want to join in. Testers are also more than welcome. Since this is prealpha you need to be careful- I would advise anyone to have this extension installed in a non-production environment. I will upload a VirtualBox image to the SVN project in the next few days as well. Here is the project page: https://sourceforge.net/projects/biobrowserext/ Best way to contact me is kirovs at gmail Finally, developing extensions in firefox is just as much fun as programming perl (maybe more ;-) ). Cheers, Stefan Kirov -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From arthur11985 at hotmail.com Mon Jun 14 00:04:26 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Mon, 14 Jun 2010 04:04:26 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , Message-ID: Hi there I cannot access module Bio::Factory::EMBOSS; after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? my code is like following. #!/usr/bin/perl use warnings; use strict; use Bio::Factory::EMBOSS; Yours sincerely Arthur _________________________________________________________________ Looking for a place to manage all your online stuff? Download the new Windows Live http://download.live.com From julia.davison83 at googlemail.com Thu Jun 17 05:03:19 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Thu, 17 Jun 2010 02:03:19 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac Message-ID: <28912041.post@talk.nabble.com> Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From David.Messina at sbc.su.se Thu Jun 17 18:57:29 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 00:57:29 +0200 Subject: [Bioperl-l] a possible issue in synopsis of BioPerl-1.6.1 > Bio::Restriction::Analysis In-Reply-To: References: Message-ID: Hi Alex, Thanks for the report. Looks like that synopsis code no longer exists in the latest version of BioPerl. See http://github.com/bioperl/bioperl-live/blob/master/Bio/Restriction/EnzymeCollection.pm Dave On Jun 11, 2010, at 01:45 , ? wrote: > Hi, > > An attempt to run synopsis code as is results in the following runtime error: > > Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. > > Replacing this: > my $enzymes = $ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->unique_cutters), "\n"; > > > with the following code: > my $enzymes=$ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed > > results in an error message-free execution and the output appears reasonable > > Cheers, > Alex > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 17 19:48:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 01:48:35 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave From florent.angly at gmail.com Thu Jun 17 22:21:31 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 12:21:31 +1000 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: References: , Message-ID: <4C1AD82B.6070005@gmail.com> Hi Arthur, The message is quite descriptive... BioPerl cannot be found on your computer. This obviously leads to the question: how did you install BioPerl? See this for details on installing BioPerl: http://www.bioperl.org/wiki/Installing_BioPerl Regards, Florent On 14/06/10 14:04, Arthur Lin wrote: > Hi there > > I cannot access module Bio::Factory::EMBOSS; > after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? > > my code is like following. > > #!/usr/bin/perl > > use warnings; > use strict; > > use Bio::Factory::EMBOSS; > > Yours sincerely > Arthur > _________________________________________________________________ > Looking for a place to manage all your online stuff? Download the new Windows Live > http://download.live.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From florent.angly at gmail.com Thu Jun 17 23:36:14 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 13:36:14 +1000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , , <4C1AD82B.6070005@gmail.com> Message-ID: <4C1AE9AE.5030807@gmail.com> Arthur, Please when replying, use 'reply all'. Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. Thanks, Florent On 18/06/10 12:40, Arthur Lin wrote: > Hi Florent > > Thank you for your correspondence. I still have the same problem after > I followed the instruction on installing_BioPerl and installed through > cpan. > During the installation, I followed through the entire process with > default option. > Have you encountered anyone who has similar problem? > > Yours sincerely > Arthur > > > Date: Fri, 18 Jun 2010 12:21:31 +1000 > > From: florent.angly at gmail.com > > To: arthur11985 at hotmail.com > > CC: bioperl-l at bioperl.org > > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? > > > > Hi Arthur, > > > > The message is quite descriptive... BioPerl cannot be found on your > > computer. This obviously leads to the question: how did you install > BioPerl? > > See this for details on installing BioPerl: > > http://www.bioperl.org/wiki/Installing_BioPerl > > Regards, > > > > Florent > > > > > > > ------------------------------------------------------------------------ > Browse profiles for Free! Singles online now! > From cjfields at illinois.edu Thu Jun 17 23:52:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 22:52:20 -0500 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> <4C1AE9AE.5030807@gmail.com> Message-ID: <9C7D5D52-2656-4C9D-A9E9-09B7CD0539BE@illinois.edu> Bio::Factory::EMBOSS is in BioPerl-Run (a separate package), not BioPerl. You need to install that separately. chris On Jun 17, 2010, at 10:36 PM, Florent Angly wrote: > Arthur, > Please when replying, use 'reply all'. > Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. > Thanks, > Florent > > On 18/06/10 12:40, Arthur Lin wrote: >> Hi Florent >> >> Thank you for your correspondence. I still have the same problem after I followed the instruction on installing_BioPerl and installed through cpan. >> During the installation, I followed through the entire process with default option. >> Have you encountered anyone who has similar problem? >> >> Yours sincerely >> Arthur >> >> > Date: Fri, 18 Jun 2010 12:21:31 +1000 >> > From: florent.angly at gmail.com >> > To: arthur11985 at hotmail.com >> > CC: bioperl-l at bioperl.org >> > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? >> > >> > Hi Arthur, >> > >> > The message is quite descriptive... BioPerl cannot be found on your >> > computer. This obviously leads to the question: how did you install BioPerl? >> > See this for details on installing BioPerl: >> > http://www.bioperl.org/wiki/Installing_BioPerl >> > Regards, >> > >> > Florent >> > >> > >> >> >> ------------------------------------------------------------------------ >> Browse profiles for Free! Singles online now! > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From anthony.goldbloom at googlemail.com Thu Jun 17 19:32:16 2010 From: anthony.goldbloom at googlemail.com (Anthony Goldbloom) Date: Fri, 18 Jun 2010 09:32:16 +1000 Subject: [Bioperl-l] What has bioinformatics ever done for us? Message-ID: <68E72261-DAED-4C7A-98E1-574AEFB00C88@gmail.com> I'm passing this around the bioinformatics community as I think it's an interesting initiative. A British bioinformatician wants to open discussion about the greatest biological discovery made possible by bioinformatics. He has just launched a "brainstorming competition" with a small cash prize to stoke discussion. Kaggle is hosting the "brainstorming competition" at: http://kaggle.com/blog/2010/06/17/%EF%BB%BFwhat-has-bioinformatics-ever-done-for-us Hopefully members of this mailing list can contribute suggestions. Anthony ps Apologies for cross posting. From premkrishnanbv at gmail.com Fri Jun 18 01:14:27 2010 From: premkrishnanbv at gmail.com (Prem) Date: Fri, 18 Jun 2010 10:44:27 +0530 Subject: [Bioperl-l] "500 Cannot connect to ----------- (Bad Host name)" Message-ID: Dear friends We urgently need somebody's help to solve a problem in Bioperl. We are actually trying to develop an online tool for sequence analysis in linux pltaform (RedHat). The first part of the program is to retrieve sequences from ncbi.nlm.nih.gov . We wrote code for that. We are using redhat linux. We can run the program successfully through terminal. It creates a fasta file of the retrieved sequences and prints the count of the sequences. Now the problem is, when we try to run it in the browser using cgi perl its not working. When we checked the error_log it says something like this, "500 Cannot connect to ----------- (Bad Host name)" We have given full file permission using chmod 777 *. File is in the directory cgi-bin. We are using Apache/2.2.3(redhat). We try to call this perl script as a submit button action (online submission form). Here we are pasting the code for your kind consideration. Kindly help us... -------------------------------------------------------------------------------------- *newtest.cgi* - sequence retrieval program -------------------------------------------------------------------------------------- #!/usr/bin/perl print "Content-Type: text/html\n\n"; use Bio::Perl; use Bio::DB::GenBank; use Bio::DB::Query::GenBank; my $db = Bio::DB::GenBank->new(); my $query = Bio::DB::Query::GenBank->new (-db => 'nucleotide', -query => "Cocos nucifera[Organism]"); my $count = $query->count; my $stream = $db->get_Stream_by_query($query); while( my $seq = $stream->next_seq ) { write_sequence(">>Cocos_nucifera.fasta",'fasta',$seq); } print $count; -------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- *test.html* - sample html page --------------------------------------------------------------------------------------
 
Scientific name
(eg. Homo sapiens for human, Cocos nucifera for coconut etc.)
 
-------------------------------------------------------------------------------------- regards Prem krishnan B V Centre for Bioinformatics University of Kerala Kariavattom Campus Thiruvananthapuram From florent.angly at gmail.com Fri Jun 18 01:39:39 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 15:39:39 +1000 Subject: [Bioperl-l] Status of assembly modules In-Reply-To: References: Message-ID: <4C1B069B.5020105@gmail.com> Hi Joshua, Yes, there have been interesting improvements in the assembly BioPerl module since v1.6.1. You can find these changes in the development version of BioPerl at http://github.com/bioperl/. I'll take this opportunity to introduce people who don't follow the commit messages to the new features that have been introduced: First, there is support for more file formats from high-throughput platforms, including those generated by de novo assembly and comparative assembly tools, such as: * Roche 454 GS Assembler, aka Newbler (the ACE-454 variant) * Maq * Sam * Bowtie There is support for running a lot more of these tools in Bioperl-run Bio::Tools::Run : * Roche 454 GS Assembler, aka Newbler * Minimo * Maq * Samtools * Bowtie In terms of writing assembly file, I added the option to write ACE files, which is quite useful because maybe assembly programs recognize this format. So now you can read assemblies, modify them as you see fit and exporting them to other programs by writing the modified assembly in an ACE file. The internals of the IO parsers have acquired some granularity as it is now possible to read/write assembly files entirely, or one contig at a time. This is terrific to reduce memory usage. That's about it... Regards, Florent PS/ Josh, you filed bug reports related to several of these issues (http://bugzilla.open-bio.org/show_bug.cgi?id=2726, http://bugzilla.open-bio.org/show_bug.cgi?id=2483). I am closing the ones that were not closed yet and thank you for submitting patches. On 18/06/10 14:00, Joshua Udall wrote: > Florent - > > I didn't want to ask a direct question on-list to perhaps avoid > confusion. Were you able to improve/submit a ContigIO to bioperl that > works with one entry at a time (instead of slurping the entire ace > file)? > > From David.Messina at sbc.su.se Fri Jun 18 05:37:31 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 11:37:31 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Message-ID: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave From awitney at sgul.ac.uk Fri Jun 18 05:39:15 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Fri, 18 Jun 2010 10:39:15 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> On 17 Jun 2010, at 10:03, perlcurl wrote: > I have the Bioperl files downloaded, but when I try to run a simple script > (even just use Bio::Perl, which has been suggested as an easy test), I get > this message: "Can't locate Bio/Perl.pm in @INC " followed by a long > directry list. Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be located in that "long directory list" for Perl to find it. Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix HTH adam From jun.yin at ucd.ie Fri Jun 18 04:59:29 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 09:59:29 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Hi, Dave, Thx a million for your reply. But I have to say I am a bit confused. In the BioPerl guide, http://www.bioperl.org/wiki/Advanced_BioPerl They say that, Capital word should be used for methods returning objects, for example $aln->get_SeqFeatures; #which returns Bio::SeqFeature objects So, $aln->select() actually returns Bio::LocatableSeq objects, I think it is probably better to use $aln->select_Seqs; For the $new_aln=$aln->select_Seqs([1,3,5..10,15],"toggle"); I am thinking of assigning the first argument of the methods as coordinates or position of the sequences, and the rest of the arguments are parameters. Thus an array reference [1,3,5..10] seems better than a list (1,3,5..10), the latter will be hard to recognize the other parameters. I plan to write: Sub select_Seqs { my($self, at args)=@_; my %params; my @new_coords; if(ref($args[0] eq "ARRAY") { my $coords=shift @args; #@newcoords=_cont_coord($coords); #do something with the cords reference } else { #some warning } #do something with the other parameters if(@args) { @{$params{@args}}=undef; #do something to recognize the other parameters } #rest of the code } And of course, I can write a method as you suggest $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); Then maybe I should write all the methods in this package, which receives multiple arguments, using this way. Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Dave Messina [mailto:David.Messina at sbc.su.se] Sent: Friday, June 18, 2010 12:49 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:43:38 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:43:38 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of perlcurl Sent: Thursday, June 17, 2010 10:03 AM To: Bioperl-l at lists.open-bio.org Subject: [Bioperl-l] Install problem, Mac Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 06:47:30 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:47:30 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Message-ID: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Hi, Dave, No problem. I think your suggestion of using $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); is more reasonable. It is a more BioPerl way of defined parameters. And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); will also be recognized for the simplicity of use. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina Sent: Friday, June 18, 2010 10:38 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 09:41:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 08:41:32 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Fri Jun 18 11:05:41 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 16:05:41 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Hi, Chris, Ok, I see. Then it is better to support a call of the method like: $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); and, $newaln=$aln->select_Seqs([1, 3, 5..10,15]); But '-seqs' doesnot sound very good, I will prefer '-orders'. Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Chris Fields [mailto:cjfields at illinois.edu] Sent: Friday, June 18, 2010 2:42 PM To: Jun Yin Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 11:26:33 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 10:26:33 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Message-ID: <5A6D64AF-0EFB-427A-899D-E7FB43ADDAA2@illinois.edu> Jun, Have to go back and see what 'toggle' does, but beyond that changing it works for me. Just to note, if this is a change directly in Bio::SimpleAlign or a modification of the Bio::Align::AlignI interface we will need to add deprecation warnings to the older methods (can't just remove them). If this a newer interface then it won't be as much of a problem, but we also can't just change Bio::AlignIO to return these instead. We can now easily do this so they go off with a predetermined minor version of Bio::Root::Root, see Bio::SimpleAlign::no_sequences/num_sequences for an example using deprecated(). (Note: At some point this deprecated may need to be modified to rely more on the module's version number, such as cases where we split off code and it will need a separate numbering scheme. But for now it works). chris On Jun 18, 2010, at 10:05 AM, Jun Yin wrote: > Hi, Chris, > > Ok, I see. Then it is better to support a call of the method like: > > $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); > and, > $newaln=$aln->select_Seqs([1, 3, 5..10,15]); > > But '-seqs' doesnot sound very good, I will prefer '-orders'. > > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, June 18, 2010 2:42 PM > To: Jun Yin > Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Jun, > > It all depends on optimization. I like the named argument version myself. > The current bioperl named parameters implementation requires, in order to > parse out the named parameters, you have to call either the core > _rearrange() method or Lincoln's rearrange() utility for consistency (deals > with all sorts of variants, and Lincoln's allows aliases). Either way is a > small hit, which is fine in most cases, but if the method is called possibly > thousands of times it amplifies accordingly and may become a bottleneck on > speed. > > You could have your cake and eat it too; check if the first argument is an > arrayref and do it it the original way, otherwise use rearrange(). > > BTW, this won't work: > > '-seqs' => (1, 3, 5..10,15), -toggle => "yes" > > The list flattens out into this: > > '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) > > So they don't pair up as you would expect; this is a silent bug, as > rearrange() will happily assign 1 to 'seqs' and toss the rest unless they > are asked for. With and odd number of elements you would see warnings > popping up. > > You'll have to use arrayrefs to get proper name-value pairings: > > '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) > > chris > > On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > >> Hi, Dave, >> >> No problem. I think your suggestion of using >> $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); >> is more reasonable. It is a more BioPerl way of defined parameters. >> >> And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); >> will also be recognized for the simplicity of use. >> >> Cheers, >> Jun Yin >> Ph.D. student in U.C.D. >> >> Bioinformatics Laboratory >> Conway Institute >> University College Dublin >> >> >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, June 18, 2010 10:38 AM >> To: Jun Yin >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Interface of the method >> >> Hi Jun, >> >> >>> In the BioPerl guide, >>> http://www.bioperl.org/wiki/Advanced_BioPerl >>> >>> They say that, Capital word should be used for methods returning >>> objects, >> >> You're absolutely right. My apologies ? thanks for pointing that out. >> >> >>> Thus an array reference >>> [1,3,5..10] seems better than a list (1,3,5..10), >>> the latter will be hard to recognize the other parameters. >> >> >>> >> Aaand, you're right here, too. >> >> Again, sorry about that. It was quite late last night when I was >> replying to your email, and I sure wasn't thinking clearly. >> >> So, please don't mind me, ( carry on, as you were!) and thanks again >> for your work on this. >> >> >> Dave >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> __________ Information from ESET Smart Security, version of virus > signature database 5099 (20100509) __________ >> >> The message was checked by ESET Smart Security. >> >> http://www.eset.com >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 18 14:03:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 13:03:32 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A2741.2080604@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> Message-ID: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > On 06/17/2010 03:12 PM, Chris Fields wrote: >> Emmanuel, >> >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >> >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >> >> http://github.com/cjfields/biome >> > > Hi Chris, > > Yep I've seen it already from one of your email on the Moose list :) > I can try plug my modules to your project, however my code might be > not as evolved as yours, so it could need some improvements and > tuning to run faster and better. > >> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >> >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >> > > Well I don't really know. Let me think about it (between github and > CPAN), I'll also need to read and understand carefully your biome > project. Moreover, as already said in my previous emails, I am not > very ease with Moose right now.... > > Anyway what I can do it to change my code to better fit with actual > implementation of BioPerl 1.6 and send it to the team for later > integration? > I can also send you my Moosified version to have a look? > > Let me know > > Regards > > Emmanuel If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. Let me know. chris From scott at scottcain.net Fri Jun 18 16:55:23 2010 From: scott at scottcain.net (Scott Cain) Date: Fri, 18 Jun 2010 16:55:23 -0400 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: Hi Jay, I was going to go, but I missed the abstract deadline by exactly one month (doh!) so I'm going to skip it. Scott On Friday, June 18, 2010, Jay Hannah wrote: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) > > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From jay at jays.net Fri Jun 18 15:29:32 2010 From: jay at jays.net (Jay Hannah) Date: Fri, 18 Jun 2010 14:29:32 -0500 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4B7EE88D.1020406@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> Message-ID: <4C1BC91C.8070609@jays.net> On 2/19/2010 1:37 PM, Jay Hannah wrote: > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) Oh dear. Am I the only attendee? Scott, George: I heard a rumor you'll be at YAPC. True? Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From arthur11985 at hotmail.com Fri Jun 18 01:07:19 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Fri, 18 Jun 2010 05:07:19 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> , <4C1AE9AE.5030807@gmail.com> Message-ID: Dear All I am using bio-linux, I installed BioPerl-run-1.6.1, and installed through cpan entirely. During installation, where ever a selection is required, I just followed with default setting which is just typing "enter". After that, I tried to call the module by "use Bio::Factory::EMBOSS;" with the script that I forwarded earlier and the terminal echoes "cannot locate Bio/Factory/EMBOSS.pm". Yours sincerely Arthur _________________________________________________________________ Feeling the financial pinch? Check on MSN NZ Money for a hand http://money.msn.co.nz From julia.davison83 at googlemail.com Fri Jun 18 07:22:04 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:22:04 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> Message-ID: <28924983.post@talk.nabble.com> >Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be >located in that "long directory list" for Perl to find it. The files would initially go to my user directory or my downloads (I can't remember which install version did which). When this didn't work I tried moving them to my perl folder, and to applications. There was an install text file. I could try using the directory list in require module? >Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: Have tried both. :-( It *seemed* to be Build that had the most trouble... Thanks! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28924983.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From julia.davison83 at googlemail.com Fri Jun 18 07:25:35 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:25:35 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> References: <28912041.post@talk.nabble.com> <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Message-ID: <28925011.post@talk.nabble.com> sorry - is this in the expat library section of cpan? I've been through all those install methods, and nothing seems to change the problem. thanks. Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28925011.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From rikusia at gmail.com Fri Jun 18 14:05:02 2010 From: rikusia at gmail.com (Rikusia) Date: Fri, 18 Jun 2010 11:05:02 -0700 (PDT) Subject: [Bioperl-l] Finding homologous (fasta files) via blast Message-ID: <28929168.post@talk.nabble.com> Hi everybody. I guess you won't be able to help me, but lets give it a try. I have to write a code for university assignment. I have to find homologous of given sequence with bioperl via blast. I'm not very good at coding and i really appreciate your help. Maybe you can give me few hints? Or you have code already? I'd be thankfull you forever. -- View this message in context: http://old.nabble.com/Finding-homologous-%28fasta-files%29-via-blast-tp28929168p28929168.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From hartzell at alerce.com Fri Jun 18 23:53:55 2010 From: hartzell at alerce.com (George Hartzell) Date: Fri, 18 Jun 2010 20:53:55 -0700 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: <19484.16211.139152.780741@gargle.gargle.HOWL> Jay Hannah writes: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > > > I'm looking forward to another hackathon. :) > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? I'll be there. Arriving Sunday PM. g. From rikusia at gmail.com Sat Jun 19 05:20:58 2010 From: rikusia at gmail.com (Rikusia) Date: Sat, 19 Jun 2010 02:20:58 -0700 (PDT) Subject: [Bioperl-l] NetBlast path. Not found. Message-ID: <28933539.post@talk.nabble.com> I have code like this: #!/usr/bin/perl -w use strict; use warnings; use Bio::SearchIO; my $netblast_dir = $ENV{USERPROFILE} . "\\Desktop\\netblast"; my $blast_report; chdir ($netblast_dir) or die; system ("blastcl3 -p blastn -d nr -i in.fasta -o out.blast"); $blast_report = new Bio::SearchIO ('-format' => 'blast', '-file' => 'out.blast'); while ( my $result = $blast_report->next_result ) { my $hit_num = 0; while( my $hit = $result->next_hit ) { $hit_num++; while( my $hsp = $hit->next_hsp ) { my $hsp_num++; my $hitName = $hit->name; my $percent_id = sprintf ("%.2f", $hsp->percent_identity); my $hspLength = $hsp->hsp_length; my $hspStart = $hsp->start('hit'); my $hspEnd = $hsp->end('hit'); my $numID = $hsp->num_identical; my $numGaps = $hsp->gaps; print "Hit number: $hit_num, hsp number: $hsp_num\n\t$hitName\n" . "\t\tPercent ID: $percent_id\n" . "\t\tLength: $hspLength\n" . "\t\tRange: $hspStart - $hspEnd\n" . "\t\tIdentical residues: $numID\n" . "\t\tGaps: $numGaps\n\n"; } } } print "Done.\n"; I'm using netblast, but still Path to blastall cannot be found and changing windows enviroment variables is not helping. Do you have any ideas how to fix it? -- View this message in context: http://old.nabble.com/NetBlast-path.-Not-found.-tp28933539p28933539.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From awitney at sgul.ac.uk Sat Jun 19 09:38:12 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Sat, 19 Jun 2010 14:38:12 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28924983.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> <28924983.post@talk.nabble.com> Message-ID: <3B84D6D2-44C7-4917-9A2B-C2407FDB8C72@sgul.ac.uk> On 18 Jun 2010, at 12:22, perlcurl wrote: > > > >> Where did you put the files once you downloaded them? Did you run an > install? Bio/Perl.pm needs to be >located in that "long directory list" for > Perl to find it. > > The files would initially go to my user directory or my downloads (I can't > remember which install version did which). When this didn't work I tried > moving them to my perl folder, and to applications. > There was an install text file. > I could try using the directory list in require module? > > >> Also you could try just using the standard Unix methods (CPAN or Build.pl) > of install, see here for details: > Have tried both. :-( It *seemed* to be Build that had the most trouble... ah so you haven't managed to build Bioperl successfully yet? can you give more details of what you have tried and what exactly failed adam From jay at jays.net Mon Jun 21 10:28:22 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 21 Jun 2010 10:28:22 -0400 Subject: [Bioperl-l] bioperl.org is down? Message-ID: s$ telnet bioperl.org 80 Trying 208.94.50.58... telnet: Unable to connect to remote host: Connection refused From s.denaxas at gmail.com Tue Jun 22 03:00:31 2010 From: s.denaxas at gmail.com (Spiros Denaxas) Date: Tue, 22 Jun 2010 08:00:31 +0100 Subject: [Bioperl-l] bioperl.org is down? In-Reply-To: References: Message-ID: Hm, works fine for me here. fruit:$ telnet bioperl.org 80 Trying 208.94.50.58... Connected to bioperl.org. Escape character is '^]'. GET / [...] On Mon, Jun 21, 2010 at 3:28 PM, Jay Hannah wrote: > s$ telnet bioperl.org 80 > Trying 208.94.50.58... > telnet: Unable to connect to remote host: Connection refused > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From vecchi.b at gmail.com Wed Jun 23 08:04:48 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 09:04:48 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: Hi, BioPerl is using Array::Compare which, as of?2009-08-09, depends on Moose. This means that Moose has been a dependency (albeit indirect) for almost a year now. Just thought I should point that out! Cheers, Bruno. 2010/6/18 Chris Fields > > On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > > > On 06/17/2010 03:12 PM, Chris Fields wrote: > >> Emmanuel, > >> > >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. ?But you have two possible options: > >> > >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > >> > >> http://github.com/cjfields/biome > >> > > > > Hi Chris, > > > > Yep I've seen it already from one of your email on the Moose list :) > > I can try plug my modules to your project, however my code might be > > not as evolved as yours, so it could need some improvements and > > tuning to run faster and better. > > > >> This will eventually move into the bioperl github account, and is probably a better fit. ?Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > >> > >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. ?That frees you up to do whatever you want with the code. > >> > > > > Well I don't really know. Let me think about it (between github and > > CPAN), I'll also need to read and understand carefully your biome > > project. Moreover, as already said in my previous emails, I am not > > very ease with Moose right now.... > > > > Anyway what I can do it to change my code to better fit with actual > > implementation of BioPerl 1.6 and send it to the team for later > > integration? > > I can also send you my Moosified version to have a look? > > > > Let me know > > > > Regards > > > > Emmanuel > > If the code works, wouldn't be much work to get it into Biome. ?Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. ?Tests and such are pretty straightforward. ?If needed you can wrap BioPerl objects. > > Let me know. > > chris > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 23 10:16:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 23 Jun 2010 09:16:26 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Bruno, Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). Our dependency load is already too high as it is. I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). Stevan Little himself posted on this last year: http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. Moose may be part of the answer, and could act as a viable transition to perl 6. I have already initiated that effort with biome, which anyone is more than welcome to participate in. Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). chris On Jun 23, 2010, at 7:04 AM, Bruno Vecchi wrote: > Hi, > > BioPerl is using Array::Compare which, as of 2009-08-09, depends on > Moose. This means that Moose has been a dependency (albeit indirect) > for almost a year now. Just thought I should point that out! > > Cheers, > > Bruno. > > 2010/6/18 Chris Fields >> >> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: >> >>> On 06/17/2010 03:12 PM, Chris Fields wrote: >>>> Emmanuel, >>>> >>>> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >>>> >>>> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >>>> >>>> http://github.com/cjfields/biome >>>> >>> >>> Hi Chris, >>> >>> Yep I've seen it already from one of your email on the Moose list :) >>> I can try plug my modules to your project, however my code might be >>> not as evolved as yours, so it could need some improvements and >>> tuning to run faster and better. >>> >>>> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >>>> >>>> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >>>> >>> >>> Well I don't really know. Let me think about it (between github and >>> CPAN), I'll also need to read and understand carefully your biome >>> project. Moreover, as already said in my previous emails, I am not >>> very ease with Moose right now.... >>> >>> Anyway what I can do it to change my code to better fit with actual >>> implementation of BioPerl 1.6 and send it to the team for later >>> integration? >>> I can also send you my Moosified version to have a look? >>> >>> Let me know >>> >>> Regards >>> >>> Emmanuel >> >> If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. >> >> Let me know. >> >> chris >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l From vecchi.b at gmail.com Wed Jun 23 10:48:43 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 11:48:43 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Message-ID: Chris, > Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. ?Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. Good catch, hadn't considered it could be a soft dependency. I stand corrected, sorry about the confusion. :) > I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). ?Our dependency load is already too high as it is. ?I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). ?Stevan Little himself posted on this last year: > > http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html > > Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). ?That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. ?Moose may be part of the answer, and could act as a viable transition to perl 6. ?I have already initiated that effort with biome, which anyone is more than welcome to participate in. Oh, I agree completely. I wasn't making any judgement call in my previous message; just thought I should point that Moose was already a dependency that had slipped in, probably without people noticing since Array::Compare didn't originally depend on Moose. > Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. ?I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). Also agree; in fact, I thought about this myself a year or so ago when I wrote Bio::Protease. I initially considered proposing it for inclusion here, but ended up releasing it as a standalone module to the CPAN. Partly because it was factored out of a project that had Moose all over it, but also because there really weren't any compelling reasons to have it bundled with BioPerl: it doesn't depend on it, and it would have added more unwanted bloat to BioPerl. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. Cheers, Bruno. From abhishek.vit at gmail.com Thu Jun 24 10:20:22 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 10:20:22 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function Message-ID: Hi All I may be hitting a problem which probably hints at my grip of the language. I am trying to store Bio::SeqIO object in a hash. I have creates couple of Bio::SeqIO objects in a method and storing them as a hash reference. The goal is to use them in another subroutine for writing out data to each file. The script is trying to bin data into different files. Any idea how I could achieve creating file handles thru "Bio::SeqIO" object in one routine and pass them to another for writing. Thanks! -Abhi foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $indexes->{$lane}->{$bin}->{'file_handle'}=$out; } } From wkretzsch at gmail.com Thu Jun 24 11:24:34 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 11:24:34 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi, My understanding is that you are using a SeqIO object in order to create correctly parsed output files. In that case for each SeqIO object, open it like this: for (0..9){ $file = "my_file_$_"; push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); } simply make $file correspond to the file (or bin) you want to put your data into. then pass @outseqIOs to your other subroutine and once you've created a seq object, write it to the bin you want it to go to (in this case file number "7"): $outseqIOs[7]->write_seq($seq); I haven't tested the code, but that's the kind of thing I think you're looking for. For more info, look at the howto: http://www.bioperl.org/wiki/HOWTO:SeqIO Warren On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap wrote: > Hi All > > I may be hitting a problem which probably hints at my grip of the language. > I am trying to store Bio::SeqIO object in a hash. I have creates couple of > Bio::SeqIO objects in a method and storing them as a hash reference. The > goal is to use them in another subroutine for writing out data to each file. > The script is trying to bin data into different files. > > > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" object > in one routine and pass them to another for writing. > > > Thanks! > -Abhi > > foreach my $bin (keys %{ $indexes->{$lane} }) > ?{ > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > ?my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > ?} > } > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From abhishek.vit at gmail.com Thu Jun 24 12:19:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:19:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Warren Thanks for your quick reply. I am doing something very close to what you have suggested but I see errors which might be due to some silly mistake I am making. The difference is instead of array I am using a hash to help me extract file names by key value later. I am writing data like this. my $file_handle = $bins{$bin_name}; $file_handle->write_seq($data); Gives me an error Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. -Abhi On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar wrote: > Hi, > My understanding is that you are using a SeqIO object in order to > create correctly parsed output files. > > In that case for each SeqIO object, open it like this: > > for (0..9){ > $file = "my_file_$_"; > push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); > } > > simply make $file correspond to the file (or bin) you want to put your > data into. > > then pass @outseqIOs to your other subroutine and once you've created > a seq object, write it to the bin you want it to go to (in this case > file number "7"): > > $outseqIOs[7]->write_seq($seq); > > I haven't tested the code, but that's the kind of thing I think you're > looking for. For more info, look at the howto: > http://www.bioperl.org/wiki/HOWTO:SeqIO > > Warren > > On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > wrote: > > Hi All > > > > I may be hitting a problem which probably hints at my grip of the > language. > > I am trying to store Bio::SeqIO object in a hash. I have creates couple > of > > Bio::SeqIO objects in a method and storing them as a hash reference. The > > goal is to use them in another subroutine for writing out data to each > file. > > The script is trying to bin data into different files. > > > > > > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > object > > in one routine and pass them to another for writing. > > > > > > Thanks! > > -Abhi > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > } > > } > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > From wkretzsch at gmail.com Thu Jun 24 12:22:32 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 12:22:32 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Where are you getting the filehandles from? That is, How are you opening them? Can you show me the code? Warren On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap wrote: > Dear Warren > Thanks for your quick reply. ?I am doing something very close to what you > have suggested but I see errors which might be due to some silly mistake I > am making. The difference is instead of array I am using a hash to help me > extract file names by key value later. > I am writing data like this. > my $file_handle = $bins{$bin_name}; > ?$file_handle->write_seq($data); > Gives me an error > Can't call method "write_seq" on an undefined value at > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > 139, line 5. > -Abhi > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > wrote: >> >> Hi, >> My understanding is that you are using a SeqIO object in order to >> create correctly parsed output files. >> >> In that case for each SeqIO object, open it like this: >> >> for (0..9){ >> $file = "my_file_$_"; >> push @outseqIOs, Bio::SeqIO->new(-file ? => ">$file", -format => $format >> ); >> } >> >> simply make $file correspond to the file (or bin) you want to put your >> data into. >> >> then pass @outseqIOs to your other subroutine and once you've created >> a seq object, write it to the bin you want it to go to (in this case >> file number "7"): >> >> $outseqIOs[7]->write_seq($seq); >> >> I haven't tested the code, but that's the kind of thing I think you're >> looking for. For more info, look at the howto: >> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >> Warren >> >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> wrote: >> > Hi All >> > >> > I may be hitting a problem which probably hints at my grip of the >> > language. >> > I am trying to store Bio::SeqIO object in a hash. I have creates couple >> > of >> > Bio::SeqIO objects in a method and storing them as a hash reference. The >> > goal is to use them in another subroutine for writing out data to each >> > file. >> > The script is trying to bin data into different files. >> > >> > >> > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" >> > object >> > in one routine and pass them to another for writing. >> > >> > >> > Thanks! >> > -Abhi >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > ?{ >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > ?my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> > ?} >> > } >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > From abhishek.vit at gmail.com Thu Jun 24 12:26:02 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:26:02 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Sure. Here is the full subroutine where I am opening the file handle and storing them Thanks for your help, -A sub createBins { my $SUB ='createBins'; my $PWD = `pwd`; my $outpath = shift @_; my $lane = shift @_ ; foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $bins{$bin}=$out; } } On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar wrote: > Where are you getting the filehandles from? That is, How are you > opening them? Can you show me the code? > > Warren > > On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > wrote: > > Dear Warren > > Thanks for your quick reply. I am doing something very close to what you > > have suggested but I see errors which might be due to some silly mistake > I > > am making. The difference is instead of array I am using a hash to help > me > > extract file names by key value later. > > I am writing data like this. > > my $file_handle = $bins{$bin_name}; > > $file_handle->write_seq($data); > > Gives me an error > > Can't call method "write_seq" on an undefined value at > > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > > 139, line 5. > > -Abhi > > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > wrote: > >> > >> Hi, > >> My understanding is that you are using a SeqIO object in order to > >> create correctly parsed output files. > >> > >> In that case for each SeqIO object, open it like this: > >> > >> for (0..9){ > >> $file = "my_file_$_"; > >> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format > >> ); > >> } > >> > >> simply make $file correspond to the file (or bin) you want to put your > >> data into. > >> > >> then pass @outseqIOs to your other subroutine and once you've created > >> a seq object, write it to the bin you want it to go to (in this case > >> file number "7"): > >> > >> $outseqIOs[7]->write_seq($seq); > >> > >> I haven't tested the code, but that's the kind of thing I think you're > >> looking for. For more info, look at the howto: > >> http://www.bioperl.org/wiki/HOWTO:SeqIO > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >> wrote: > >> > Hi All > >> > > >> > I may be hitting a problem which probably hints at my grip of the > >> > language. > >> > I am trying to store Bio::SeqIO object in a hash. I have creates > couple > >> > of > >> > Bio::SeqIO objects in a method and storing them as a hash reference. > The > >> > goal is to use them in another subroutine for writing out data to each > >> > file. > >> > The script is trying to bin data into different files. > >> > > >> > > >> > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >> > object > >> > in one routine and pass them to another for writing. > >> > > >> > > >> > Thanks! > >> > -Abhi > >> > > >> > foreach my $bin (keys %{ $indexes->{$lane} }) > >> > { > >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >> > my $path="$outpath".'/'."$sample_name"; > >> > mkpath( $path, { verbose => 1, mode => 0711 }); > >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >> > ">$outpath/$sample_name/$fastQFile"); > >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >> > } > >> > } > >> > _______________________________________________ > >> > Bioperl-l mailing list > >> > Bioperl-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > > > > > From cjfields at illinois.edu Thu Jun 24 12:52:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 11:52:48 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Are you sure you haven't hit the max limit for open filehandles for your OS? Attempting to open a filehandle when you exceed this limit simply returns undef, which might explain the error. On my Mac: cjfields4:~ cjfields$ ulimit -n 256 On my ubuntu box: cjfields at pyrimidine:~$ ulimit -n 1024 I think Windows used to be much less, not sure now. You might not be able to reset this on some systems. chris On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > Sure. Here is the full subroutine where I am opening the file handle and > storing them > > Thanks for your help, > -A > > sub createBins { > my $SUB ='createBins'; > my $PWD = `pwd`; > my $outpath = shift @_; > my $lane = shift @_ ; > > foreach my $bin (keys %{ $indexes->{$lane} }) > { > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $bins{$bin}=$out; > } > } > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar > wrote: > >> Where are you getting the filehandles from? That is, How are you >> opening them? Can you show me the code? >> >> Warren >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> wrote: >>> Dear Warren >>> Thanks for your quick reply. I am doing something very close to what you >>> have suggested but I see errors which might be due to some silly mistake >> I >>> am making. The difference is instead of array I am using a hash to help >> me >>> extract file names by key value later. >>> I am writing data like this. >>> my $file_handle = $bins{$bin_name}; >>> $file_handle->write_seq($data); >>> Gives me an error >>> Can't call method "write_seq" on an undefined value at >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line >>> 139, line 5. >>> -Abhi >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>> wrote: >>>> >>>> Hi, >>>> My understanding is that you are using a SeqIO object in order to >>>> create correctly parsed output files. >>>> >>>> In that case for each SeqIO object, open it like this: >>>> >>>> for (0..9){ >>>> $file = "my_file_$_"; >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format >>>> ); >>>> } >>>> >>>> simply make $file correspond to the file (or bin) you want to put your >>>> data into. >>>> >>>> then pass @outseqIOs to your other subroutine and once you've created >>>> a seq object, write it to the bin you want it to go to (in this case >>>> file number "7"): >>>> >>>> $outseqIOs[7]->write_seq($seq); >>>> >>>> I haven't tested the code, but that's the kind of thing I think you're >>>> looking for. For more info, look at the howto: >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>> >>>> Warren >>>> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>> wrote: >>>>> Hi All >>>>> >>>>> I may be hitting a problem which probably hints at my grip of the >>>>> language. >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> couple >>>>> of >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> The >>>>> goal is to use them in another subroutine for writing out data to each >>>>> file. >>>>> The script is trying to bin data into different files. >>>>> >>>>> >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" >>>>> object >>>>> in one routine and pass them to another for writing. >>>>> >>>>> >>>>> Thanks! >>>>> -Abhi >>>>> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>> { >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>> my $path="$outpath".'/'."$sample_name"; >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>> ">$outpath/$sample_name/$fastQFile"); >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>> } >>>>> } >>>>> _______________________________________________ >>>>> Bioperl-l mailing list >>>>> Bioperl-l at lists.open-bio.org >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>> >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 12:55:58 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:55:58 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi Chris Thanks for joining this conversation. I dont think max limit of file handles is a problem. I am opening about 12 in this case. [apratap at grima]$ ulimit -n 4096 -A On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > Are you sure you haven't hit the max limit for open filehandles for your > OS? Attempting to open a filehandle when you exceed this limit simply > returns undef, which might explain the error. On my Mac: > > cjfields4:~ cjfields$ ulimit -n > 256 > > On my ubuntu box: > > cjfields at pyrimidine:~$ ulimit -n > 1024 > > I think Windows used to be much less, not sure now. You might not be able > to reset this on some systems. > > chris > > On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > > Sure. Here is the full subroutine where I am opening the file handle and > > storing them > > > > Thanks for your help, > > -A > > > > sub createBins { > > my $SUB ='createBins'; > > my $PWD = `pwd`; > > my $outpath = shift @_; > > my $lane = shift @_ ; > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $bins{$bin}=$out; > > } > > } > > > > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > wkretzsch at gmail.com > >> wrote: > > > >> Where are you getting the filehandles from? That is, How are you > >> opening them? Can you show me the code? > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >> wrote: > >>> Dear Warren > >>> Thanks for your quick reply. I am doing something very close to what > you > >>> have suggested but I see errors which might be due to some silly > mistake > >> I > >>> am making. The difference is instead of array I am using a hash to help > >> me > >>> extract file names by key value later. > >>> I am writing data like this. > >>> my $file_handle = $bins{$bin_name}; > >>> $file_handle->write_seq($data); > >>> Gives me an error > >>> Can't call method "write_seq" on an undefined value at > >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line > >>> 139, line 5. > >>> -Abhi > >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>> wrote: > >>>> > >>>> Hi, > >>>> My understanding is that you are using a SeqIO object in order to > >>>> create correctly parsed output files. > >>>> > >>>> In that case for each SeqIO object, open it like this: > >>>> > >>>> for (0..9){ > >>>> $file = "my_file_$_"; > >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > $format > >>>> ); > >>>> } > >>>> > >>>> simply make $file correspond to the file (or bin) you want to put your > >>>> data into. > >>>> > >>>> then pass @outseqIOs to your other subroutine and once you've created > >>>> a seq object, write it to the bin you want it to go to (in this case > >>>> file number "7"): > >>>> > >>>> $outseqIOs[7]->write_seq($seq); > >>>> > >>>> I haven't tested the code, but that's the kind of thing I think you're > >>>> looking for. For more info, look at the howto: > >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>> > >>>> Warren > >>>> > >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>> wrote: > >>>>> Hi All > >>>>> > >>>>> I may be hitting a problem which probably hints at my grip of the > >>>>> language. > >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >> couple > >>>>> of > >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >> The > >>>>> goal is to use them in another subroutine for writing out data to > each > >>>>> file. > >>>>> The script is trying to bin data into different files. > >>>>> > >>>>> > >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >>>>> object > >>>>> in one routine and pass them to another for writing. > >>>>> > >>>>> > >>>>> Thanks! > >>>>> -Abhi > >>>>> > >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>> { > >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>> my $path="$outpath".'/'."$sample_name"; > >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>> } > >>>>> } > >>>>> _______________________________________________ > >>>>> Bioperl-l mailing list > >>>>> Bioperl-l at lists.open-bio.org > >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>> > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 13:03:00 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 13:03:00 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: After a bit more error checking, I was able to resolve the previous error Resolved Error : Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. This happened due to null value returned by one of the hash. However I am hitting a new issue. New Error : Can't call method "isa" on unblessed reference at /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, line 49 -A On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > Hi Chris > > Thanks for joining this conversation. I dont think max limit of file > handles is a problem. I am opening about 12 in this case. > > [apratap at grima]$ ulimit -n > 4096 > > -A > > > On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> Are you sure you haven't hit the max limit for open filehandles for your >> OS? Attempting to open a filehandle when you exceed this limit simply >> returns undef, which might explain the error. On my Mac: >> >> cjfields4:~ cjfields$ ulimit -n >> 256 >> >> On my ubuntu box: >> >> cjfields at pyrimidine:~$ ulimit -n >> 1024 >> >> I think Windows used to be much less, not sure now. You might not be able >> to reset this on some systems. >> >> chris >> >> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >> >> > Sure. Here is the full subroutine where I am opening the file handle and >> > storing them >> > >> > Thanks for your help, >> > -A >> > >> > sub createBins { >> > my $SUB ='createBins'; >> > my $PWD = `pwd`; >> > my $outpath = shift @_; >> > my $lane = shift @_ ; >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > { >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $bins{$bin}=$out; >> > } >> > } >> > >> > >> > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >> wkretzsch at gmail.com >> >> wrote: >> > >> >> Where are you getting the filehandles from? That is, How are you >> >> opening them? Can you show me the code? >> >> >> >> Warren >> >> >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> >> wrote: >> >>> Dear Warren >> >>> Thanks for your quick reply. I am doing something very close to what >> you >> >>> have suggested but I see errors which might be due to some silly >> mistake >> >> I >> >>> am making. The difference is instead of array I am using a hash to >> help >> >> me >> >>> extract file names by key value later. >> >>> I am writing data like this. >> >>> my $file_handle = $bins{$bin_name}; >> >>> $file_handle->write_seq($data); >> >>> Gives me an error >> >>> Can't call method "write_seq" on an undefined value at >> >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >> line >> >>> 139, line 5. >> >>> -Abhi >> >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >> >>> wrote: >> >>>> >> >>>> Hi, >> >>>> My understanding is that you are using a SeqIO object in order to >> >>>> create correctly parsed output files. >> >>>> >> >>>> In that case for each SeqIO object, open it like this: >> >>>> >> >>>> for (0..9){ >> >>>> $file = "my_file_$_"; >> >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >> $format >> >>>> ); >> >>>> } >> >>>> >> >>>> simply make $file correspond to the file (or bin) you want to put >> your >> >>>> data into. >> >>>> >> >>>> then pass @outseqIOs to your other subroutine and once you've created >> >>>> a seq object, write it to the bin you want it to go to (in this case >> >>>> file number "7"): >> >>>> >> >>>> $outseqIOs[7]->write_seq($seq); >> >>>> >> >>>> I haven't tested the code, but that's the kind of thing I think >> you're >> >>>> looking for. For more info, look at the howto: >> >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >>>> >> >>>> Warren >> >>>> >> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> >>>> wrote: >> >>>>> Hi All >> >>>>> >> >>>>> I may be hitting a problem which probably hints at my grip of the >> >>>>> language. >> >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> >> couple >> >>>>> of >> >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> >> The >> >>>>> goal is to use them in another subroutine for writing out data to >> each >> >>>>> file. >> >>>>> The script is trying to bin data into different files. >> >>>>> >> >>>>> >> >>>>> Any idea how I could achieve creating file handles thru >> "Bio::SeqIO" >> >>>>> object >> >>>>> in one routine and pass them to another for writing. >> >>>>> >> >>>>> >> >>>>> Thanks! >> >>>>> -Abhi >> >>>>> >> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >> >>>>> { >> >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> >>>>> my $path="$outpath".'/'."$sample_name"; >> >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >> >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> >>>>> ">$outpath/$sample_name/$fastQFile"); >> >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> >>>>> } >> >>>>> } >> >>>>> _______________________________________________ >> >>>>> Bioperl-l mailing list >> >>>>> Bioperl-l at lists.open-bio.org >> >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >>>>> >> >>> >> >>> >> >> >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > From jay at jays.net Thu Jun 24 13:10:21 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 24 Jun 2010 13:10:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: On Jun 24, 2010, at 1:03 PM, Abhishek Pratap wrote: > However I am hitting a new issue. You might also seek help via IRC: http://bioperl.org/wiki/IRC (I have to get on a plane in 20 minutes, so the channel might be quiet.) I, for one, don't attempt support via email due to chronic 20-40 minute posting delays. Jay Hannah email defamation league http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From cjfields at illinois.edu Thu Jun 24 13:19:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 12:19:21 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. chris On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > After a bit more error checking, I was able to resolve the previous error > > Resolved Error : Can't call method "write_seq" on an undefined value > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line 139, line 5. > This happened due to null value returned by one of the hash. > > However I am hitting a new issue. > New Error : Can't call method "isa" on unblessed reference at > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > line 49 > > > -A > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > >> Hi Chris >> >> Thanks for joining this conversation. I dont think max limit of file >> handles is a problem. I am opening about 12 in this case. >> >> [apratap at grima]$ ulimit -n >> 4096 >> >> -A >> >> >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: >> >>> Are you sure you haven't hit the max limit for open filehandles for your >>> OS? Attempting to open a filehandle when you exceed this limit simply >>> returns undef, which might explain the error. On my Mac: >>> >>> cjfields4:~ cjfields$ ulimit -n >>> 256 >>> >>> On my ubuntu box: >>> >>> cjfields at pyrimidine:~$ ulimit -n >>> 1024 >>> >>> I think Windows used to be much less, not sure now. You might not be able >>> to reset this on some systems. >>> >>> chris >>> >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >>> >>>> Sure. Here is the full subroutine where I am opening the file handle and >>>> storing them >>>> >>>> Thanks for your help, >>>> -A >>>> >>>> sub createBins { >>>> my $SUB ='createBins'; >>>> my $PWD = `pwd`; >>>> my $outpath = shift @_; >>>> my $lane = shift @_ ; >>>> >>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>> { >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>> my $path="$outpath".'/'."$sample_name"; >>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>> ">$outpath/$sample_name/$fastQFile"); >>>> $bins{$bin}=$out; >>>> } >>>> } >>>> >>>> >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >>> wkretzsch at gmail.com >>>>> wrote: >>>> >>>>> Where are you getting the filehandles from? That is, How are you >>>>> opening them? Can you show me the code? >>>>> >>>>> Warren >>>>> >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >>>>> wrote: >>>>>> Dear Warren >>>>>> Thanks for your quick reply. I am doing something very close to what >>> you >>>>>> have suggested but I see errors which might be due to some silly >>> mistake >>>>> I >>>>>> am making. The difference is instead of array I am using a hash to >>> help >>>>> me >>>>>> extract file names by key value later. >>>>>> I am writing data like this. >>>>>> my $file_handle = $bins{$bin_name}; >>>>>> $file_handle->write_seq($data); >>>>>> Gives me an error >>>>>> Can't call method "write_seq" on an undefined value at >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >>> line >>>>>> 139, line 5. >>>>>> -Abhi >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>>>>> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> My understanding is that you are using a SeqIO object in order to >>>>>>> create correctly parsed output files. >>>>>>> >>>>>>> In that case for each SeqIO object, open it like this: >>>>>>> >>>>>>> for (0..9){ >>>>>>> $file = "my_file_$_"; >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >>> $format >>>>>>> ); >>>>>>> } >>>>>>> >>>>>>> simply make $file correspond to the file (or bin) you want to put >>> your >>>>>>> data into. >>>>>>> >>>>>>> then pass @outseqIOs to your other subroutine and once you've created >>>>>>> a seq object, write it to the bin you want it to go to (in this case >>>>>>> file number "7"): >>>>>>> >>>>>>> $outseqIOs[7]->write_seq($seq); >>>>>>> >>>>>>> I haven't tested the code, but that's the kind of thing I think >>> you're >>>>>>> looking for. For more info, look at the howto: >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>>>>> >>>>>>> Warren >>>>>>> >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>>>>> wrote: >>>>>>>> Hi All >>>>>>>> >>>>>>>> I may be hitting a problem which probably hints at my grip of the >>>>>>>> language. >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >>>>> couple >>>>>>>> of >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >>>>> The >>>>>>>> goal is to use them in another subroutine for writing out data to >>> each >>>>>>>> file. >>>>>>>> The script is trying to bin data into different files. >>>>>>>> >>>>>>>> >>>>>>>> Any idea how I could achieve creating file handles thru >>> "Bio::SeqIO" >>>>>>>> object >>>>>>>> in one routine and pass them to another for writing. >>>>>>>> >>>>>>>> >>>>>>>> Thanks! >>>>>>>> -Abhi >>>>>>>> >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>>>>> { >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>>>>> my $path="$outpath".'/'."$sample_name"; >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>>>>> ">$outpath/$sample_name/$fastQFile"); >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>>>>> } >>>>>>>> } >>>>>>>> _______________________________________________ >>>>>>>> Bioperl-l mailing list >>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>> >>>>>> >>>>>> >>>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 14:09:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:09:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Chris I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. Thanks! -Abhi On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line > 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for > your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be > able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to > what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From cjfields at illinois.edu Thu Jun 24 14:14:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:14:41 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> The best way to get that is by using next_seq(), not next_dataset. It will not be as fast, but should suffice. At the moment we don't have plans on supporting output for hash refs frm next_dataset until we can standardize upon a way for describing such data from various parsers. chris On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > Dear Chris > > I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. > > Thanks! > -Abhi > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've created > >>>>>>> a seq object, write it to the bin you want it to go to (in this case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 14:28:21 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:28:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: Thanks everyone for your input. I have the script working. Chris : Not sure what is the rationale, write_seq and next_seq has different key names in the hash ref( eg . 'display_id' and '-id') . This could possibly cause conflicts in future development. Also just wondering why currently only Bio:SeqIO:Quality object works with write_seq. -Abhi On Thu, Jun 24, 2010 at 2:14 PM, Chris Fields wrote: > The best way to get that is by using next_seq(), not next_dataset. It will > not be as fast, but should suffice. > > At the moment we don't have plans on supporting output for hash refs frm > next_dataset until we can standardize upon a way for describing such data > from various parsers. > > chris > > On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > > > Dear Chris > > > > I am indeed passing hash ref via next_dataset. Any slick way to convert > the ref to Bio::Seq::Quality format. > > > > Thanks! > > -Abhi > > > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields > wrote: > > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > > > chris > > > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > > > After a bit more error checking, I was able to resolve the previous > error > > > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > > line 139, line 5. > > > This happened due to null value returned by one of the hash. > > > > > > However I am hitting a new issue. > > > New Error : Can't call method "isa" on unblessed reference at > > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pmline 126, > > > line 49 > > > > > > > > > -A > > > > > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > > > >> Hi Chris > > >> > > >> Thanks for joining this conversation. I dont think max limit of file > > >> handles is a problem. I am opening about 12 in this case. > > >> > > >> [apratap at grima]$ ulimit -n > > >> 4096 > > >> > > >> -A > > >> > > >> > > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > > >> > > >>> Are you sure you haven't hit the max limit for open filehandles for > your > > >>> OS? Attempting to open a filehandle when you exceed this limit > simply > > >>> returns undef, which might explain the error. On my Mac: > > >>> > > >>> cjfields4:~ cjfields$ ulimit -n > > >>> 256 > > >>> > > >>> On my ubuntu box: > > >>> > > >>> cjfields at pyrimidine:~$ ulimit -n > > >>> 1024 > > >>> > > >>> I think Windows used to be much less, not sure now. You might not be > able > > >>> to reset this on some systems. > > >>> > > >>> chris > > >>> > > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > >>> > > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > > >>>> storing them > > >>>> > > >>>> Thanks for your help, > > >>>> -A > > >>>> > > >>>> sub createBins { > > >>>> my $SUB ='createBins'; > > >>>> my $PWD = `pwd`; > > >>>> my $outpath = shift @_; > > >>>> my $lane = shift @_ ; > > >>>> > > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>> { > > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>> my $path="$outpath".'/'."$sample_name"; > > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > >>>> ">$outpath/$sample_name/$fastQFile"); > > >>>> $bins{$bin}=$out; > > >>>> } > > >>>> } > > >>>> > > >>>> > > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > > >>> wkretzsch at gmail.com > > >>>>> wrote: > > >>>> > > >>>>> Where are you getting the filehandles from? That is, How are you > > >>>>> opening them? Can you show me the code? > > >>>>> > > >>>>> Warren > > >>>>> > > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > > >>>>> wrote: > > >>>>>> Dear Warren > > >>>>>> Thanks for your quick reply. I am doing something very close to > what > > >>> you > > >>>>>> have suggested but I see errors which might be due to some silly > > >>> mistake > > >>>>> I > > >>>>>> am making. The difference is instead of array I am using a hash to > > >>> help > > >>>>> me > > >>>>>> extract file names by key value later. > > >>>>>> I am writing data like this. > > >>>>>> my $file_handle = $bins{$bin_name}; > > >>>>>> $file_handle->write_seq($data); > > >>>>>> Gives me an error > > >>>>>> Can't call method "write_seq" on an undefined value at > > >>>>>> > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > >>> line > > >>>>>> 139, line 5. > > >>>>>> -Abhi > > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > >>>>>> wrote: > > >>>>>>> > > >>>>>>> Hi, > > >>>>>>> My understanding is that you are using a SeqIO object in order to > > >>>>>>> create correctly parsed output files. > > >>>>>>> > > >>>>>>> In that case for each SeqIO object, open it like this: > > >>>>>>> > > >>>>>>> for (0..9){ > > >>>>>>> $file = "my_file_$_"; > > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > > >>> $format > > >>>>>>> ); > > >>>>>>> } > > >>>>>>> > > >>>>>>> simply make $file correspond to the file (or bin) you want to put > > >>> your > > >>>>>>> data into. > > >>>>>>> > > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > > >>>>>>> file number "7"): > > >>>>>>> > > >>>>>>> $outseqIOs[7]->write_seq($seq); > > >>>>>>> > > >>>>>>> I haven't tested the code, but that's the kind of thing I think > > >>> you're > > >>>>>>> looking for. For more info, look at the howto: > > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > > >>>>>>> > > >>>>>>> Warren > > >>>>>>> > > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > > >>>>>>> wrote: > > >>>>>>>> Hi All > > >>>>>>>> > > >>>>>>>> I may be hitting a problem which probably hints at my grip of > the > > >>>>>>>> language. > > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > > >>>>> couple > > >>>>>>>> of > > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > > >>>>> The > > >>>>>>>> goal is to use them in another subroutine for writing out data > to > > >>> each > > >>>>>>>> file. > > >>>>>>>> The script is trying to bin data into different files. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Any idea how I could achieve creating file handles thru > > >>> "Bio::SeqIO" > > >>>>>>>> object > > >>>>>>>> in one routine and pass them to another for writing. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Thanks! > > >>>>>>>> -Abhi > > >>>>>>>> > > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>>>>>> { > > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file > => > > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > >>>>>>>> } > > >>>>>>>> } > > >>>>>>>> _______________________________________________ > > >>>>>>>> Bioperl-l mailing list > > >>>>>>>> Bioperl-l at lists.open-bio.org > > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>>>>>>> > > >>>>>> > > >>>>>> > > >>>>> > > >>>> _______________________________________________ > > >>>> Bioperl-l mailing list > > >>>> Bioperl-l at lists.open-bio.org > > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>> > > >>> > > >> > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > > > From cjfields at illinois.edu Thu Jun 24 14:47:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:47:26 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: <678DF936-84D0-4305-B240-84B73264A25A@illinois.edu> On Jun 24, 2010, at 1:28 PM, Abhishek Pratap wrote: > Thanks everyone for your input. I have the script working. > > Chris : Not sure what is the rationale, write_seq and next_seq has different > key names in the hash ref( eg . 'display_id' and '-id') . This could > possibly cause conflicts in future development. The '-id' constructor argument (which is terribly non-specific) defaults to setting the display_id, as this is the most commonly used one. Frankly, if it were up to me I would either die/warn with the -id parameter ('Error: Use a more specific ID type; defaulting to display_id') and defer as is, but that breaks API at the moment. This behavior is also the default in the older FASTQ parser as well as others (FASTA I believe), so it is retained for consistency. > Also just wondering why > currently only Bio:SeqIO:Quality object works with write_seq. For FASTQ format, that would be the only one that would make sense (why output something with no quality information). Unless I'm missing something, that's a feature, not a bug. > -Abhi chris From cjfields at illinois.edu Fri Jun 25 12:44:31 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 11:44:31 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray Message-ID: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> All, We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. chris From cjfields at illinois.edu Fri Jun 25 14:38:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 13:38:24 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> An update to this: I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. chris On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > All, > > We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. > > I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 15:39:36 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 14:39:36 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> Message-ID: <10B48011-6C9E-419A-A3FE-18A7B688A264@illinois.edu> Marian's code has been moved into the github Bio-Microarray repo (we can rename that if needed). Bio::Expression modules have been moved into bioperl-microarray for the time being, though I would like to allow use of that namespace for others if needed. Bio::Expression and Bio::Microarray have been removed on a branch of bioperl-live, all tests pass, so it just needs merging. chris On Jun 25, 2010, at 1:38 PM, Chris Fields wrote: > An update to this: > > I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. > > If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. > > chris > > On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > >> All, >> >> We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. >> >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. >> >> If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 16:31:04 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 15:31:04 -0500 Subject: [Bioperl-l] version() vs seq_version() Message-ID: Looking at bug 3095: http://bugzilla.open-bio.org/show_bug.cgi?id=3095 As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? chris From hlapp at drycafe.net Sat Jun 26 20:32:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:32:46 -0700 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > I also suggest we eventually do the same for the PhyloNetwork > modules down the line, and that we steer users who want to submit > new publication-focused bioperl-reliant code into their own CPAN > distributions. That makes sense. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From hlapp at drycafe.net Sat Jun 26 20:36:17 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:36:17 -0700 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: References: Message-ID: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Versioning of a sequence database entry and of the sequence itself need not be the same thing. Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. -hilmar On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > Looking at bug 3095: > > http://bugzilla.open-bio.org/show_bug.cgi?id=3095 > > As indicated there seems to be some redundancy between > Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several > formats (asciitree, genbank, embl, bsml, etc) all call > seq_version(), whereas others use version() if at all. My guess is > the SV line from EMBL, but shouldn't using version() handle this? > > Just as an experiment, I actually got seq_version to delegate to > version() and all tests passed, so maybe this should just delegate > or alias? > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 26 21:26:10 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 26 Jun 2010 20:26:10 -0500 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> References: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Message-ID: <0F532CB7-9195-4226-B76C-3BC8767BA546@illinois.edu> I think, as long as this is clarified for the sake of documentation that would suffice. I'm hazarding a guess that Bio::Seq::version() would be the seq-specific one, whereas Bio::Seq::RichSeq::seq_version() is the seq record (e.g. database entry specific) one. chris On Jun 26, 2010, at 7:36 PM, Hilmar Lapp wrote: > Versioning of a sequence database entry and of the sequence itself need not be the same thing. > > Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. > > -hilmar > > On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > >> Looking at bug 3095: >> >> http://bugzilla.open-bio.org/show_bug.cgi?id=3095 >> >> As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? >> >> Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > From buiduyminh at gmail.com Mon Jun 28 09:15:14 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:15:14 -0400 Subject: [Bioperl-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language. From JSahl at som.umaryland.edu Mon Jun 28 10:04:06 2010 From: JSahl at som.umaryland.edu (Sahl, Jason) Date: Mon, 28 Jun 2010 10:04:06 -0400 Subject: [Bioperl-l] maf write Message-ID: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Hi. I'm trying to write out an alignment in the maf format and I get this error: ------------- EXCEPTION: Bio::Root::NotImplemented ------------- MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by package Bio::AlignIO::maf. This is not your fault - author of Bio::AlignIO::maf should be blamed! I'm using Perl 5.8.8. Anyone know if there are plans to implement write_aln for maf files in the near future? Or does anyone have an easy work around? thank you, Jason Sahl From jovel_juan at hotmail.com Mon Jun 28 13:19:23 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Mon, 28 Jun 2010 17:19:23 +0000 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hello Everybody! I generally use SearchIO to parse my blast reports. To extract hit name, I do: ... while (my $hsp = $hit->next_hsp){ ... my $hit_name = $hit -> name(); ... } It usually gives me something like: ref|NC_006884.1| How can I get ALL the information contained in the name line of that hit?, for example: >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome THANKS IN ADVANCE! JUAN _________________________________________________________________ Connect to the next generation of MSN Messenger? http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline From cjfields at illinois.edu Mon Jun 28 13:28:38 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 28 Jun 2010 12:28:38 -0500 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: <62E8D186-9EA5-4C08-AFBF-8316F5C1A78A@illinois.edu> $hit->description, I believe. chris On Jun 28, 2010, at 12:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, for example: > >> gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From shalabh.sharma7 at gmail.com Mon Jun 28 13:42:41 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Mon, 28 Jun 2010 13:42:41 -0400 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hey Juan, You need to use $hit->description; -Shalabh On Mon, Jun 28, 2010 at 1:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I > do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, > for example: > > >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From buiduyminh at gmail.com Tue Jun 29 09:58:09 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Tue, 29 Jun 2010 09:58:09 -0400 Subject: [Bioperl-l] Error when Using BLAT???? Message-ID: Hi everyone, I am writing an application that allows me to search through a database (yeast.nt*) *with a few queries (yeastquery.fasta). Here is the code: *use warnings;* *use Bio::Tools::Run::Alignment::Blat;* *use Bio::SeqIO;* *use Bio::DB::Fasta;* * * *my $seqio_object = Bio::SeqIO -> new (-file => 'C:/Users/MINH/Desktop/yeastquery.fasta', -format => 'fasta'); * * * *my $database = 'C:/Users/MINH/Desktop/yeast.nt';* *my $db = Bio::DB::Fasta->new($database); * * * *my $factory = Bio::Tools::Run::Alignment::Blat->new(); * * * *while (my $blat_object = $seqio_object -> next_seq) {** * * my $results = $factory -> run($blat_object,$db); * *}* BUT i got this error and don't know how to fix it. I am sorry, i am new to Perl and Bioperl. I am using window 7, Strawberry. *Replacement list is longer than search list at C:/strawberry/perl/site/lib/Bio/Range.pm line 251.* *Use of uninitialized value in concatenation (.) or string at C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm line 251, line 1.* *'-out' is not recognized as an internal or external command,* *operable program or batch file.* * * *------------- EXCEPTION: Bio::Root::Exception -------------* *MSG: Blat call ( -out=psl C:\Users\MINH\AppData\Local\Temp\BUiXTGzYC2 C:\Users\MINH\AppData\Local\Temp\yQK5pzgJ_z) crashed: 256 * * * *STACK: Error::throw* *STACK: Bio::Root::Root::throw C:/strawberry/perl/site/lib/Bio/Root/Root.pm:368* *STACK: Bio::Tools::Run::Alignment::Blat::_run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:261* *STACK: Bio::Tools::Run::Alignment::Blat::run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:178* *STACK: D:/eclipswp/bioperl/readfasta.pl:15* *-----------------------------------------------------------* Thank you for your help. From david.breimann at gmail.com Tue Jun 29 10:01:49 2010 From: david.breimann at gmail.com (David Breimann) Date: Tue, 29 Jun 2010 07:01:49 -0700 (PDT) Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome Message-ID: Hello, I have calculated some numeric score for each nucleotide in some genbank file.I would like to plot these scores against the genome. I'm quite new to bio perl so I have done some reading and experimenting with Bio::Graphics and followed the examples in the docs. However, I am not sure how can I easily plot this graph. Should I create a feature separately for each nucleotide? This does not seem to make snse. I thought Bio::Graphics::Glyph::xyplot might be relevant but coul not fully understand how to apply the example given to my setting. Thanks, David From biopython at maubp.freeserve.co.uk Tue Jun 29 10:51:55 2010 From: biopython at maubp.freeserve.co.uk (Peter) Date: Tue, 29 Jun 2010 15:51:55 +0100 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: On Tue, Jun 29, 2010 at 3:01 PM, David Breimann wrote: > Hello, > > I have calculated some numeric score for each nucleotide in some > genbank file.I would like to plot these scores against the genome. > As a quick solution you could use Artemis. Load the GenBank file, then menu Graph, Add User Plot, and pick a plot file. There are several supported formats but the simplest is one score per line (one line per nucleotide). You can use several scores per line (i.e. several scores per nucleotide) and then you get several different color lines on the plot. See: http://www.sanger.ac.uk/resources/software/artemis/ Peter From cjfields at illinois.edu Tue Jun 29 11:18:52 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 10:18:52 -0500 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> This is also possible via Bio::Graphics I believe, using some of the xyplot glyphs. Genome-wide information is probably better described using a compressed format like wig/bigwig (which BioPerl can also read via Lincoln's Bio::BigFile). chris On Jun 29, 2010, at 9:51 AM, Peter wrote: > On Tue, Jun 29, 2010 at 3:01 PM, David Breimann > wrote: >> Hello, >> >> I have calculated some numeric score for each nucleotide in some >> genbank file.I would like to plot these scores against the genome. >> > > As a quick solution you could use Artemis. Load the GenBank file, > then menu Graph, Add User Plot, and pick a plot file. There are > several supported formats but the simplest is one score per line > (one line per nucleotide). You can use several scores per line (i.e. > several scores per nucleotide) and then you get several different > color lines on the plot. See: > > http://www.sanger.ac.uk/resources/software/artemis/ > > Peter > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jovel_juan at hotmail.com Tue Jun 29 14:18:33 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Tue, 29 Jun 2010 18:18:33 +0000 Subject: [Bioperl-l] Parsing by organism In-Reply-To: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> References: , , <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hello Everybody! When using SearchIO to parse BLAST reports, is it possible to extract only hits belonging to an specific organism? If yes, how? Thanks in advance, JUAN _________________________________________________________________ Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy! http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us From shalabh.sharma7 at gmail.com Tue Jun 29 15:08:40 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Tue, 29 Jun 2010 15:08:40 -0400 Subject: [Bioperl-l] Parsing by organism In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hey Juan, When you parse your blast file and to get description you use $hit->description. That field contains information about the organism (in the square brackets , [....]), there you can have a condition for a particular organism. -Shalabh On Tue, Jun 29, 2010 at 2:18 PM, Juan Jovel wrote: > > Hello Everybody! > > When using SearchIO to parse BLAST reports, is it possible to extract only > hits belonging to an specific organism? If yes, how? > > Thanks in advance, > > JUAN > > _________________________________________________________________ > Invite your mail contacts to join your friends list with Windows Live > Spaces. It's easy! > > http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 29 17:06:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 30 Jun 2010 09:06:33 +1200 Subject: [Bioperl-l] SearchIO hit->description mod? In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32E731078A1@exchsth.agresearch.co.nz> Not sure if it's a useful tweak, but is it worth changing $hit->description to return an array? Just mentioned it as I notice when I'm parsing search results from Blasts against the NR database, the fasta header line consists of multiple values separated by a CTRL-A. $hit->accession will give you the accession of the first element in the header but $hit->description will give you the descriptions of all the rest of the elements. Probably not explaining it very well but perhaps both $hit->description and $hit->accession should return arrays or maybe use wantarray and return either a scalar or array? I don't know my way around the code well enough but it probably belongs further up the tree - Bio::Search::Hit? or even up in Bio::Seq? My hack for just getting back the first description, that matches up with the accession I hope, is: (split(chr(1),$hit->description))[0] --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 29 18:41:28 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 29 Jun 2010 17:41:28 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] Message-ID: Hi, http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] The above search returns 2124 entries. I try to use the following bioperl code to do the search. I got an error (see below). Could anybody let me know how I should modify the bioperl search code to get the same results? #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'esearch', -db => 'pubmed', -email => 'mymail at foo.bar', -term => 'anoxia[mh] and neoplasms[mh]', -retmode => 'xml', -retmax => 1000000, ); print $factory->get_retmax,"\n"; print $factory->get_Response->content; ############################ $ ./main.pl --------------------- WARNING --------------------- MSG: NCBI esearch Errors/Warnings: Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage [No items found.] --------------------------------------------------- 0 000 anoxia[mh] "anoxia"[MeSH Terms] +and+neoplasms[mh]No items found. -- Regards, Peng From cjfields at illinois.edu Tue Jun 29 19:15:15 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 18:15:15 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] In-Reply-To: References: Message-ID: <2864F3E9-8212-4DF9-A2DA-8AA1C2947F13@illinois.edu> Use uppercase with bools: 'anoxia[mh] AND neoplasms[mh]' This gives me 2124 hits. Note the URL you provided does that as well ...db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] chris On Jun 29, 2010, at 5:41 PM, Peng Yu wrote: > Hi, > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] > > The above search returns 2124 entries. I try to use the following > bioperl code to do the search. I got an error (see below). Could > anybody let me know how I should modify the bioperl search code to get > the same results? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'esearch', > -db => 'pubmed', > -email => 'mymail at foo.bar', > -term => 'anoxia[mh] and neoplasms[mh]', > -retmode => 'xml', > -retmax => 1000000, > ); > > print $factory->get_retmax,"\n"; > print $factory->get_Response->content; > > ############################ > > $ ./main.pl > > --------------------- WARNING --------------------- > MSG: NCBI esearch Errors/Warnings: > Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage > [No items found.] > --------------------------------------------------- > 0 > > 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd"> > 000 > anoxia[mh] > "anoxia"[MeSH Terms] > +and+neoplasms[mh]No > items found. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 30 13:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:35:51 -0500 Subject: [Bioperl-l] Seeking comments, Bio::Species memleak fix Message-ID: <1277919351.21543.66.camel@pyrimidine.igb.uiuc.edu> All, I have a branch in github (topic/species_proxy) that converts Bio::Species into a proxy class. This appears to fix a ton of problems introduced during the Tree/Taxonomy refactoring a few years back. Advantages: 1) No need for Scalar::Util::weaken within Bio::Species or Bio::Tree::Node. Cleanup methods are handled during instance destruction. 2) This paves the way a bit more for eventual deprecation of Bio::Species in 1.7. 3) Works with bioperl-db and BioSQL as is (passes on both my local Ubuntu 9.10 and Mac OS X 10.6), perl 5.10 and 5.12, should work with earlier perl versions. Disadvantages: 1) For every Bio::Species, we have a Bio::Taxon, a Bio::Tree::Tree, and a Bio::DB::Taxonomy (one instance more than the previous Bio::Species implementation). We can probably reduce that down considerably by creating the needed instances lazily. This fixes: bug 3017 use threads to get genbank file error bug 2594 Bio::Species memory leak and possibly others: bug 2773 Bio::Tree::Node gets destroyed even though it is still live If there are no comments, I'll merge this with the master branch in the next few days. ++++++++++++++++++++++++++++++++++++++++++ (NOTE: skip the next two paragraphs if you don't want to read nasty implementation details) Bio::Species had previously inherited from Bio::Taxon, but also required it to hold a Bio::Tree::Tree which contained a circular reference back to the Bio::Species object, thus requiring Scalar::Util::weaken. This has caused several hard-to-diagnose problems with premature garbage collection, including some issues with threads (bug 3017). The above proxy fix converts Bio::Species into a proxy class, which only inherits the interface (Bio::Tree::NodeI), and delegates to an internal Bio::Taxon and a Bio::Tree::Tree. Neither contained object has a reference back to the Bio::Species instance, thus the class can perform proper garbage collection. chris From cjfields at illinois.edu Wed Jun 30 13:47:39 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:47:39 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <64DE1483-417A-4B78-9914-93260D04E90A@illinois.edu> On Jun 26, 2010, at 7:32 PM, Hilmar Lapp wrote: > > On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > That makes sense. > > -hilmar Okay, I'll merge in the various branches. Marian, your code is currently in Bio-Microarray (can be renamed if needed). Thanks! chris From j.stiller at uq.edu.au Tue Jun 1 08:03:48 2010 From: j.stiller at uq.edu.au (Jiri Stiller) Date: Tue, 01 Jun 2010 18:03:48 +1000 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation Message-ID: <1275379428.24468.20.camel@lafs-746g12s> Hi, I am trying to process bam file using Bio::Assembly::IO. I attached test script and output. When I am retrieving contigs I get correct contig number and position but contig objects build from reads of different orientation don't contain any read sequences. Contigs built from the reads of the same orientations are fine. Your help/advice would be greatly appreciated. Cheers, -- Jiri Stiller Senior Bioinformatics Researcher Australian Centre for Plant Functional Genomics School of Land, Crop and Food Sciences University of Queensland Brisbane QLD 4072 j.stiller at uq.edu.au Phone: +61 (0)7 3346 7082 Mobile: +61 (0) 422 941 581 Fax: +61 (0)7 3365 1177 -------------- next part -------------- There are [178] contigs in this assembly CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/101291-101366] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102051-102152] There are [2] sequences in this contig [TTATCTGCCAAAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCAC] HWI-EAS406:6:2:876:1541#0 1 1 76 102051 102126 [CGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATTTTTGTTATAACTAAAAATGAAA] HWI-EAS406:7:66:970:866#0 1 1 76 102077 102152 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/102259-102375] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103339-103414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103503-103593] There are [2] sequences in this contig [CTTTGAATAGTGTTCCTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATT] HWI-EAS406:7:36:1651:564#0 1 1 76 103503 103578 [CTCTCTCATCAAATCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAG] HWI-EAS406:7:42:1490:1464#0 1 1 76 103518 103593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/103651-103995] There are [3] sequences in this contig [CTTTTGGGTGGTCTTACTTGCTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCT] HWI-EAS406:7:51:519:1517#0 1 1 76 103651 103726 [GATCTGAGCATCTCAGAAGCTTATATGGGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCT] HWI-EAS406:7:52:1269:1884#0 1 1 76 103714 103789 [CTCTTGCTGAAGACGAAGCAATGTGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGT] HWI-EAS406:7:100:1623:1160#0 1 1 76 103788 103863 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104002-104077] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104144-104254] There are [2] sequences in this contig [TTATGTTTTTTCTCTGAAGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCT] HWI-EAS406:6:92:1645:1627#0 1 1 76 104144 104219 [GGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAATACTACTCCTCTTCCTTGCGTTAT] HWI-EAS406:6:46:436:1967#0 1 1 76 104179 104254 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/104756-104831] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105167-105268] There are [2] sequences in this contig [ATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTA] HWI-EAS406:6:62:249:1175#0 1 1 76 105167 105242 [AGCATGAGCTTTTCGATTTCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGC] HWI-EAS406:6:36:814:2018#0 1 1 76 105193 105268 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/105380-105470] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106271-106439] There are [3] sequences in this contig [CTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAG] HWI-EAS406:6:93:583:1229#0 1 1 76 106271 106346 [GGAGGCTCTGAAGAAGATGAGAGCTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAG] HWI-EAS406:5:17:1458:1611#0 1 1 76 106308 106383 [TCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCTGATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAA] HWI-EAS406:5:57:727:683#0 1 1 76 106364 106439 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/106808-106883] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/125-317] There are [5] sequences in this contig [AGGCCGTAGGAGACGGCGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAG] HWI-EAS406:6:81:1026:1375#0 1 1 76 125 200 [CGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAG] HWI-EAS406:7:99:74:1159#0 1 1 76 171 246 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:27:509:1087#0 1 1 76 176 251 [AGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGAAAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTA] HWI-EAS406:6:85:844:610#0 1 1 76 176 251 [GCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAATTTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAG] HWI-EAS406:5:37:558:195#0 1 1 76 242 317 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/1282-1357] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13485-13560] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13574-13703] There are [2] sequences in this contig [TCTTGTTCTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTAC] HWI-EAS406:5:74:70:987#0 1 1 76 13574 13649 [TGTTGATGGTGGCCGAGTCTACAAGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTT] HWI-EAS406:5:63:987:1854#0 1 1 76 13628 13703 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/13787-13898] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/14531-14606] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/15027-15102] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/17829-17904] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/18191-18266] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19049-19176] There are [4] sequences in this contig [ACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAACGCAAAGATGACAAA] HWI-EAS406:6:47:476:1809#0 1 1 76 19049 19124 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:5:55:902:1256#0 1 1 76 19099 19174 [ATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTT] HWI-EAS406:6:24:1105:1536#0 1 1 76 19099 19174 [AAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGT] HWI-EAS406:5:81:1045:1991#0 1 1 76 19101 19176 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19226-19381] There are [2] sequences in this contig [TGAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGG] HWI-EAS406:7:6:1755:615#0 1 1 76 19226 19301 [GAGCATTAATGAGTTTCTGAAACCAGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGA] HWI-EAS406:7:29:1005:1120#0 1 1 76 19227 19302 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19682-19757] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/19938-20081] There are [3] sequences in this contig [TTTCTCGGCCAGAAGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGAC] HWI-EAS406:5:76:1534:574#0 1 1 76 19938 20013 [TATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCG] HWI-EAS406:5:88:260:1266#0 1 1 76 19965 20040 [CTCTGGACTGGGCAGTGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAA] HWI-EAS406:6:68:1763:137#0 1 1 76 20006 20081 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20107-20288] There are [6] sequences in this contig [ATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATA] HWI-EAS406:7:86:946:878#0 1 1 76 20107 20182 [TGAGGAGAACTTGGTGACGCTTTCAAACACTTCAAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTG] HWI-EAS406:6:47:1422:395#0 1 1 76 20128 20203 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:59:1710:1444#0 1 1 76 20205 20280 [CGGAAGTGCTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCC] HWI-EAS406:7:91:386:241#0 1 1 76 20205 20280 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:279:1687#0 1 1 76 20213 20288 [CTAGTAGCCTTCCGCTGCTCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAG] HWI-EAS406:6:86:280:1685#0 1 1 76 20213 20288 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/2023-2098] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20305-20414] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20417-20492] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20848-20960] There are [2] sequences in this contig [TCAATCGGGTAAGAGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTT] HWI-EAS406:5:9:1771:746#0 1 1 76 20848 20923 [GAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCTGTGTTAT] HWI-EAS406:7:27:1692:1515#0 1 1 76 20862 20937 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/20969-21057] There are [2] sequences in this contig [CCATTCGTGCTTGGTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTG] HWI-EAS406:7:25:261:426#0 1 1 76 20969 21044 [GTTTAATTGGTTCGATGTGATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCT] HWI-EAS406:6:34:1342:1525#0 1 1 76 20982 21057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21180-21271] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/21281-21356] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23183-23315] There are [2] sequences in this contig [CCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAGAAATTAGTCAGAAGATCC] HWI-EAS406:6:16:1118:1937#0 1 1 76 23183 23258 [GAAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTAAGGGT] HWI-EAS406:7:99:295:294#0 1 1 76 23240 23315 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/23397-23534] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/24257-24332] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26533-26608] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/26627-26702] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27548-27700] There are [3] sequences in this contig [TTTGCTCACATTGTCTATGGTTTTAGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATG] HWI-EAS406:7:70:7:790#0 1 1 76 27548 27623 [AGTTCATTTCTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGC] HWI-EAS406:5:66:1045:865#0 1 1 76 27572 27647 [CCATGCCGCCAATGCCTAGCGGCGGCTCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACC] HWI-EAS406:7:11:1363:966#0 1 1 76 27625 27700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/27740-28037] There are [5] sequences in this contig [TCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCCAATGGCTCCATCTTCAAGTCCAATG] HWI-EAS406:6:80:586:416#0 1 1 76 27740 27815 [CCCAAGTCCAGAAACAGTCCCTGATATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGA] HWI-EAS406:6:4:735:317#0 1 1 76 27836 27911 [CTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGGCCTCTCCAGA] HWI-EAS406:6:24:834:1604#0 1 1 76 27865 27940 [GACCCATGCCACCGGCAATGGCCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTT] HWI-EAS406:6:7:1577:1072#0 1 1 76 27910 27985 [AAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCATTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAG] HWI-EAS406:5:13:1479:1512#0 1 1 76 27962 28037 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/28046-28217] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29612-29737] There are [4] sequences in this contig [CTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGG] HWI-EAS406:6:40:287:1418#0 1 1 76 29617 29692 [CCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTT] HWI-EAS406:7:68:469:1690#0 1 1 76 29622 29697 [GCCATTCTATTTGTACAACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAG] HWI-EAS406:6:52:609:1614#0 1 1 76 29645 29720 [ACAACAGCTCTTAGGTACATGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAA] HWI-EAS406:6:8:1095:1720#0 1 1 76 29662 29737 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/29830-29950] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30300-30448] There are [2] sequences in this contig [GCATACTACTAGTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATA] HWI-EAS406:5:56:245:827#0 1 1 76 30300 30375 [ATACTTGACGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTA] HWI-EAS406:6:54:518:1635#0 1 1 76 30373 30448 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30513-30588] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/30599-30674] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31131-31206] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31241-31316] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31740-31815] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/31979-32209] There are [6] sequences in this contig [GGTAAATCTATTGTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTT] HWI-EAS406:5:36:280:195#0 1 1 76 31979 32054 [TTATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGG] HWI-EAS406:6:43:1362:96#0 1 1 76 32034 32109 [TATAAATTGTATTTAACTTTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGT] HWI-EAS406:5:20:1502:651#0 1 1 76 32035 32110 [TTTGTTAATAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTG] HWI-EAS406:7:23:1380:514#0 1 1 76 32053 32128 [TTTAGAGTGATTGAGTGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAA] HWI-EAS406:6:2:1437:1250#0 1 1 76 32116 32191 [TGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTCAGTCTCTTA] HWI-EAS406:5:12:820:1835#0 1 1 76 32134 32209 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3201-3322] There are [3] sequences in this contig [ACATGACCCGAACCGAATCCGATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATC] HWI-EAS406:7:4:730:1881#0 1 1 76 3201 3276 [GAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCG] HWI-EAS406:5:24:1242:1707#0 1 1 76 3226 3301 [ACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCGACCCGGATCCGAGAAGACCCGAACCGAGAATT] HWI-EAS406:7:93:1120:174#0 1 1 76 3247 3322 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/32214-33432] There are [37] sequences in this contig [GCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGA] HWI-EAS406:5:80:1511:419#0 1 1 76 32230 32305 [GCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAAAAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAG] HWI-EAS406:7:1:1373:1308#0 1 1 76 32233 32308 [GAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCC] HWI-EAS406:5:4:716:332#0 1 1 76 32283 32358 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:35:950:2013#0 1 1 76 32295 32370 [TAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGG] HWI-EAS406:7:80:372:1536#0 1 1 76 32295 32370 [AGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGT] HWI-EAS406:6:48:889:1456#0 1 1 76 32296 32371 [GCACCGAGTGTAGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAG] HWI-EAS406:6:55:699:904#0 1 1 76 32320 32395 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:6:43:758:1706#0 1 1 76 32331 32406 [AGAATCGCTCTCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATT] HWI-EAS406:7:23:801:958#0 1 1 76 32331 32406 [GAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAA] HWI-EAS406:5:40:1659:524#0 1 1 76 32359 32434 [AGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGA] HWI-EAS406:7:75:276:530#0 1 1 76 32366 32441 [TATTTTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTA] HWI-EAS406:5:69:687:818#0 1 1 76 32403 32478 [TTGTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAG] HWI-EAS406:7:82:811:1711#0 1 1 76 32407 32482 [GTATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCA] HWI-EAS406:6:18:728:1283#0 1 1 76 32409 32484 [TAATTAGCAGTAATACAAGTACTTTTTGTATTACTAGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAA] HWI-EAS406:7:39:575:1279#0 1 1 76 32446 32521 [ATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTACTTCAAAAGC] HWI-EAS406:5:77:554:699#0 1 1 76 32484 32559 [TCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAG] HWI-EAS406:6:38:322:1075#0 1 1 76 32552 32627 [AAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGG] HWI-EAS406:6:4:1708:1127#0 1 1 76 32554 32629 [AAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAA] HWI-EAS406:6:96:313:366#0 1 1 76 32581 32656 [AGTGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTT] HWI-EAS406:7:24:1099:862#0 1 1 76 32594 32669 [TGCTTCGTGACCAGGACAGTAAAGCTCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTC] HWI-EAS406:7:93:648:748#0 1 1 76 32596 32671 [AGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCCAGACGAAGATA] HWI-EAS406:7:36:1426:1766#0 1 1 76 32626 32701 [TGCCAGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGA] HWI-EAS406:6:7:1217:1949#0 1 1 76 32687 32762 [CCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCG] HWI-EAS406:7:16:1331:1702#0 1 1 76 32703 32778 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:5:49:1610:706#0 1 1 76 32740 32815 [ACCATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGC] HWI-EAS406:7:34:213:833#0 1 1 76 32740 32815 [CATTTGTACTCCAGAAGATGATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCAT] HWI-EAS406:5:66:1471:637#0 1 1 76 32742 32817 [GCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTGGGTTAGACTGCGGTGATTATC] HWI-EAS406:7:38:1290:397#0 1 1 76 32776 32851 [CCGCCGTGTCCAGATAGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATG] HWI-EAS406:6:48:1074:1154#0 1 1 76 32956 33031 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:6:1:315:1531#0 1 1 76 32994 33069 [TTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATTTAGACGACTTCATATTAAGGATGATGGAC] HWI-EAS406:7:92:232:127#0 1 1 76 32994 33069 [ATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTA] HWI-EAS406:6:65:1385:736#0 1 1 76 33061 33136 [TTTCCCTGGGGTCGTCTAACGTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAG] HWI-EAS406:7:64:152:1162#0 1 1 76 33091 33166 [GTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGCGCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGC] HWI-EAS406:6:47:1344:2015#0 1 1 76 33142 33217 [TTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAGACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCC] HWI-EAS406:5:53:181:602#0 1 1 76 33286 33361 [CAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTT] HWI-EAS406:5:82:1052:1943#0 1 1 76 33337 33412 [TGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGTCCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTG] HWI-EAS406:7:45:1464:1655#0 1 1 76 33357 33432 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33440-33860] There are [12] sequences in this contig [AACAAAGGTACATGTATAAATGTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATT] HWI-EAS406:7:88:1428:1042#0 1 1 76 33440 33515 [GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCT] HWI-EAS406:7:3:1161:1283#0 1 1 76 33461 33536 [AGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGT] HWI-EAS406:7:7:1669:1770#0 1 1 76 33465 33540 [AGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAAC] HWI-EAS406:5:9:203:511#0 1 1 76 33471 33546 [AACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACAGTGTCTTAGTTCCAACTATTGGTGAGCAAATT] HWI-EAS406:6:36:660:812#0 1 1 76 33487 33562 [TTGATGAGGAGCGAGAGTATGACCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAA] HWI-EAS406:7:94:1100:1480#0 1 1 76 33579 33654 [GAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGA] HWI-EAS406:6:38:327:576#0 1 1 76 33699 33774 [GGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATT] HWI-EAS406:6:64:1457:110#0 1 1 76 33701 33776 [GTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGA] HWI-EAS406:7:70:734:1923#0 1 1 76 33704 33779 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:5:38:1327:1329#0 1 1 76 33716 33791 [AAGAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTC] HWI-EAS406:7:58:1187:138#0 1 1 76 33716 33791 [GAAAGACAAAGAGAAGGTGACGTTTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTG] HWI-EAS406:7:98:1611:696#0 1 1 76 33718 33793 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3373-3533] There are [2] sequences in this contig [CACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTT] HWI-EAS406:7:63:789:161#0 1 1 76 3373 3448 [CGAATGCCCAGGTCTACTGTTGAGTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCA] HWI-EAS406:7:50:888:1103#0 1 1 76 3408 3483 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/33872-34074] There are [5] sequences in this contig [AGCTCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAA] HWI-EAS406:6:61:1059:811#0 1 1 76 33872 33947 [TCAAGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT] HWI-EAS406:7:37:209:1471#0 1 1 76 33875 33950 [AGGATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTTCTA] HWI-EAS406:7:51:467:1510#0 1 1 76 33878 33953 [CAGGCTAACTTCTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGAT] HWI-EAS406:6:23:1431:966#0 1 1 76 33940 34015 [GACAGTGGGACAATGATACATATGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGA] HWI-EAS406:6:37:467:1855#0 1 1 76 33999 34074 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/339-458] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34368-34443] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/34773-34850] There are [2] sequences in this contig [TCTGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTA] HWI-EAS406:7:42:1652:1481#0 1 1 76 34773 34848 [TGAAAGTTGCACTTCTTCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGA] HWI-EAS406:6:57:1235:1165#0 1 1 76 34775 34850 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/35200-35275] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3595-3703] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3722-3816] There are [2] sequences in this contig [AGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTG] HWI-EAS406:5:40:1484:49#0 1 1 76 3722 3797 [GTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAATTTGGTCTGGACAATTTGGTCTGATACAATTTGGGCT] HWI-EAS406:6:54:632:1253#0 1 1 76 3741 3816 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38041-38163] There are [2] sequences in this contig [AAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGACAATATTGCTACCCACGGCTTAATAAAAGTTGCGTGT] HWI-EAS406:7:59:595:1702#0 1 1 76 38041 38116 [CTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGGTCTTAGACAAAGA] HWI-EAS406:6:45:1385:450#0 1 1 76 38088 38163 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/38179-38348] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/3933-4035] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/40492-40567] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/42571-42646] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43000-43120] There are [2] sequences in this contig [GCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGCATCCAGAACCCACGACAACTAATACTAGCCAA] HWI-EAS406:6:48:1107:1243#0 1 1 76 43007 43082 [ACCTGCATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG] HWI-EAS406:6:16:215:1613#0 1 1 76 43045 43120 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43213-43322] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43346-43459] There are [3] sequences in this contig [TCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAA] HWI-EAS406:5:61:1069:1184#0 1 1 76 43346 43421 [CCTTTTCGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATC] HWI-EAS406:7:30:1025:1208#0 1 1 76 43378 43453 [CGATCCAAACCCACCTCCTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTC] HWI-EAS406:6:91:366:235#0 1 1 76 43384 43459 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43804-43879] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/43994-44071] There are [2] sequences in this contig [AGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGG] HWI-EAS406:5:67:352:1473#0 1 1 76 43994 44069 [GGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAAGAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAG] HWI-EAS406:5:11:796:675#0 1 1 76 43996 44071 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44197-44354] There are [4] sequences in this contig [TAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGT] HWI-EAS406:7:78:1706:1488#0 1 1 76 44197 44272 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:5:40:1010:733#0 1 1 76 44238 44313 [TAGCAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGATTC] HWI-EAS406:6:6:1380:1161#0 1 1 76 44238 44313 [GATTGCCTTGTGAGTCCCAATATGATCCTCGATTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGT] HWI-EAS406:6:39:1311:1899#0 1 1 76 44279 44354 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44386-44669] There are [2] sequences in this contig [GGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCTAGAAGTAAAAA] HWI-EAS406:5:8:579:1223#0 1 1 76 44386 44461 [CCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCATCACCCGACACATTA] HWI-EAS406:6:33:276:2024#0 1 1 76 44529 44604 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/44736-44811] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/474-549] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48444-48600] There are [2] sequences in this contig [GTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGCCAAGCTAAG] HWI-EAS406:6:36:565:711#0 1 1 76 48444 48519 [TATAGACTGCCAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTT] HWI-EAS406:7:56:1561:265#0 1 1 76 48501 48576 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/48653-49079] There are [10] sequences in this contig [ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAA] HWI-EAS406:5:10:337:1092#0 1 1 76 48721 48796 [AAAGTCAGAGAAACATCACTAACAATGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAA] HWI-EAS406:5:11:1385:2002#0 1 1 76 48757 48832 [TGGAAAATCAGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAA] HWI-EAS406:6:62:259:1312#0 1 1 76 48782 48857 [AGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATATGAATCAAATACCTGTCGATTTT] HWI-EAS406:7:33:1719:1816#0 1 1 76 48807 48882 [AATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGG] HWI-EAS406:5:17:1474:1143#0 1 1 76 48883 48958 [GCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCT] HWI-EAS406:7:33:65:1522#0 1 1 76 48890 48965 [CATGACTGAGCACCTCGAACAATCTTGAGGTTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCT] HWI-EAS406:7:97:1691:1904#0 1 1 76 48897 48972 [TTTATGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTA] HWI-EAS406:6:62:998:2004#0 1 1 76 48927 49002 [GTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTC] HWI-EAS406:7:41:1526:1040#0 1 1 76 48936 49011 [GCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTGTAGGGTCACTCACAATACTCTTCACAGCTGTGAGC] HWI-EAS406:5:63:1654:235#0 1 1 76 48960 49035 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49084-49976] There are [46] sequences in this contig [AGAGATATGAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAAC] HWI-EAS406:5:54:681:1708#0 1 1 76 49107 49182 [GAAGACGATTACCGGGAAGGTGTGTGTTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCG] HWI-EAS406:7:30:1305:206#0 1 1 76 49115 49190 [TGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAACCGTATCTCT] HWI-EAS406:7:68:588:743#0 1 1 76 49145 49220 [GAACCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTCTGA] HWI-EAS406:5:60:1517:1629#0 1 1 76 49208 49283 [AGCCTGTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCC] HWI-EAS406:7:97:948:1532#0 1 1 76 49269 49344 [GTAATTCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAA] HWI-EAS406:7:53:1440:1060#0 1 1 76 49274 49349 [TCTGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGT] HWI-EAS406:5:68:1041:1314#0 1 1 76 49279 49354 [TCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAGCCGTGAGACGGTGGCGGTATGAGGGTTGCTTGA] HWI-EAS406:5:92:967:285#0 1 1 76 49308 49383 [TAAAAAAATGAAAAAAATAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACA] HWI-EAS406:7:98:1054:1631#0 1 1 76 49389 49464 [TAATCAATAAGGGGATTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTA] HWI-EAS406:6:33:635:533#0 1 1 76 49406 49481 [TTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGAC] HWI-EAS406:5:63:1559:1547#0 1 1 76 49453 49528 [AAAACATAAGCTTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGA] HWI-EAS406:6:54:789:786#0 1 1 76 49459 49534 [TTGATAAGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAA] HWI-EAS406:6:39:1685:1777#0 1 1 76 49470 49545 [AGATTATAAATGCTGTCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGT] HWI-EAS406:6:95:1346:1513#0 1 1 76 49476 49551 [AAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTC] HWI-EAS406:7:45:856:1803#0 1 1 76 49495 49570 [ATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCAC] HWI-EAS406:7:17:551:847#0 1 1 76 49507 49582 [CAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAAC] HWI-EAS406:7:55:752:1229#0 1 1 76 49524 49599 [AGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACA] HWI-EAS406:7:37:659:1877#0 1 1 76 49525 49600 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:5:52:34:1884#0 1 1 76 49531 49606 [TAGAGTCGAGGAGAAGCTTGTCCACGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCA] HWI-EAS406:6:40:1211:1751#0 1 1 76 49531 49606 [CGCCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC] HWI-EAS406:5:58:257:1600#0 1 1 76 49555 49630 [CCCATCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTCCA] HWI-EAS406:6:72:868:197#0 1 1 76 49557 49632 [CCACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATG] HWI-EAS406:7:35:1732:912#0 1 1 76 49601 49676 [CACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGA] HWI-EAS406:5:6:321:1826#0 1 1 76 49602 49677 [ACCACAGTGGAAAAACACTGACGGCCTCCAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAG] HWI-EAS406:6:2:1733:562#0 1 1 76 49603 49678 [AAGATGAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAA] HWI-EAS406:5:44:1362:1897#0 1 1 76 49671 49746 [GAGGTTTTGCTGATATTAGGAGCCGGGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCA] HWI-EAS406:6:1:1082:657#0 1 1 76 49676 49751 [GCCTGCAAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAG] HWI-EAS406:6:53:1533:1846#0 1 1 76 49754 49829 [AAGGAAGATAAGAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGAT] HWI-EAS406:5:83:1518:639#0 1 1 76 49760 49835 [GTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAG] HWI-EAS406:7:6:1067:204#0 1 1 76 49789 49864 [TCCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCG] HWI-EAS406:6:41:858:1916#0 1 1 76 49806 49881 [CCAAAGGTTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGT] HWI-EAS406:7:26:1458:1886#0 1 1 76 49807 49882 [TTAAAGAACATGTTAGGGTGATCAATCACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACG] HWI-EAS406:6:2:872:581#0 1 1 76 49814 49889 [CTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGAT] HWI-EAS406:7:7:311:1973#0 1 1 76 49847 49922 [TGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATC] HWI-EAS406:5:43:1531:1812#0 1 1 76 49848 49923 [GATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAG] HWI-EAS406:5:80:139:821#0 1 1 76 49857 49932 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:5:26:200:1239#0 1 1 76 49861 49936 [AGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTC] HWI-EAS406:6:26:1096:1809#0 1 1 76 49861 49936 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:24:774:383#0 1 1 76 49862 49937 [GAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCC] HWI-EAS406:5:49:1571:1861#0 1 1 76 49862 49937 [AGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCC] HWI-EAS406:7:94:1301:1918#0 1 1 76 49866 49941 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:5:2:12:1497#0 1 1 76 49879 49954 [GCGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGC] HWI-EAS406:6:9:645:1495#0 1 1 76 49879 49954 [CGTAACGACGGGAACTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCT] HWI-EAS406:7:64:1555:372#0 1 1 76 49880 49955 [CTATGAACGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTC] HWI-EAS406:6:24:463:628#0 1 1 76 49894 49969 [CGACACAAAAGTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTA] HWI-EAS406:7:8:863:63#0 1 1 76 49901 49976 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/49982-50183] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50401-50539] There are [7] sequences in this contig [AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGC] HWI-EAS406:7:4:1328:1505#0 1 1 76 50401 50476 [CTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAG] HWI-EAS406:7:68:1290:1820#0 1 1 76 50410 50485 [GTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATAC] HWI-EAS406:7:93:895:769#0 1 1 76 50426 50501 [ATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATC] HWI-EAS406:5:38:578:1978#0 1 1 76 50439 50514 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:40:685:1064#0 1 1 76 50444 50519 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:6:73:1068:946#0 1 1 76 50453 50528 [ATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTT] HWI-EAS406:5:9:479:1782#0 1 1 76 50464 50539 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/50554-55307] There are [3361] sequences in this contig [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:43:1500:794#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:6:84:648:826#0 1 1 76 50554 50629 [GAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGC] HWI-EAS406:7:16:503:229#0 1 1 76 50554 50629 [GCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGAC] HWI-EAS406:5:85:289:1897#0 1 1 76 50557 50632 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACA] HWI-EAS406:6:96:103:272#0 1 1 76 50558 50633 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:6:1:208:981#0 1 1 76 50560 50635 [TTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACC] HWI-EAS406:7:7:1771:1016#0 1 1 76 50560 50635 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCA] HWI-EAS406:5:29:636:1854#0 1 1 76 50564 50639 [GCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAG] HWI-EAS406:7:36:1104:1759#0 1 1 76 50566 50641 [AAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCT] HWI-EAS406:7:54:1327:1715#0 1 1 76 50571 50646 [AAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTC] HWI-EAS406:6:1:1062:918#0 1 1 76 50572 50647 [AAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCT] HWI-EAS406:6:11:1780:829#0 1 1 76 50573 50648 [AGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTG] HWI-EAS406:7:30:1018:1822#0 1 1 76 50574 50649 [GTCATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGC] HWI-EAS406:6:19:566:1606#0 1 1 76 50590 50665 [CATTGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGA] HWI-EAS406:5:57:665:1234#0 1 1 76 50592 50667 [TGGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCT] HWI-EAS406:6:32:1315:1182#0 1 1 76 50595 50670 [GGGCGAGCAAGGCATGGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTT] HWI-EAS406:7:73:718:707#0 1 1 76 50596 50671 [GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGG] HWI-EAS406:6:52:1154:867#0 1 1 76 50611 50686 [GAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGA] HWI-EAS406:7:34:629:1493#0 1 1 76 50612 50687 [GACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAG] HWI-EAS406:7:90:1010:1759#0 1 1 76 50616 50691 [ACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGT] HWI-EAS406:7:94:774:1420#0 1 1 76 50617 50692 [CAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCG] HWI-EAS406:7:40:826:413#0 1 1 76 50619 50694 [GCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTT] HWI-EAS406:6:74:90:506#0 1 1 76 50628 50703 [TGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAG] HWI-EAS406:6:21:173:1409#0 1 1 76 50648 50723 [GGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAG] HWI-EAS406:7:64:926:1064#0 1 1 76 50661 50736 [GCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGC] HWI-EAS406:5:32:717:546#0 1 1 76 50736 50811 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:5:65:1666:1672#0 1 1 76 50739 50814 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:6:24:1782:1765#0 1 1 76 50745 50820 [AAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGC] HWI-EAS406:5:23:1107:1513#0 1 1 76 50747 50822 [GCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGAC] HWI-EAS406:7:38:557:566#0 1 1 76 50752 50827 [CTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACG] HWI-EAS406:6:49:1324:1654#0 1 1 76 50753 50828 [TCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGA] HWI-EAS406:7:59:762:782#0 1 1 76 50754 50829 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:24:963:235#0 1 1 76 50756 50831 [CACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGA] HWI-EAS406:6:64:951:728#0 1 1 76 50764 50839 [ACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAA] HWI-EAS406:6:56:768:1346#0 1 1 76 50765 50840 [CGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAG] HWI-EAS406:5:3:205:160#0 1 1 76 50773 50848 [GGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGC] HWI-EAS406:7:34:471:1673#0 1 1 76 50774 50849 [GACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCT] HWI-EAS406:5:46:1284:820#0 1 1 76 50779 50854 [TCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCA] HWI-EAS406:6:5:1225:596#0 1 1 76 50783 50858 [CCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAG] HWI-EAS406:6:7:835:305#0 1 1 76 50784 50859 [GGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCG] HWI-EAS406:7:74:747:461#0 1 1 76 50802 50877 [TCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCG] HWI-EAS406:7:74:174:410#0 1 1 76 50808 50883 [ATGGCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAG] HWI-EAS406:7:37:415:589#0 1 1 76 50818 50893 [GAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:7:6:1564:858#0 1 1 76 50846 50921 [CAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCT] HWI-EAS406:7:7:1295:1258#0 1 1 76 50857 50932 [AGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTA] HWI-EAS406:7:55:52:968#0 1 1 76 50858 50933 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:34:1227:1484#0 1 1 76 50885 50960 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:6:15:427:980#0 1 1 76 50890 50965 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:5:1113:853#0 1 1 76 50905 50980 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:5:77:324:1399#0 1 1 76 50911 50986 [ATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGC] HWI-EAS406:6:3:1766:1294#0 1 1 76 50911 50986 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:6:68:479:1856#0 1 1 76 50912 50987 [TGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCA] HWI-EAS406:7:84:89:1889#0 1 1 76 50912 50987 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:27:1458:1785#0 1 1 76 50914 50989 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:5:80:1487:4#0 1 1 76 50915 50990 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:822:1111#0 1 1 76 50915 50990 [AGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTT] HWI-EAS406:6:67:1266:536#0 1 1 76 50917 50992 [TTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACAT] HWI-EAS406:6:53:391:407#0 1 1 76 50946 51021 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:7:51:1586:385#0 1 1 76 51057 51132 [TTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTG] HWI-EAS406:5:77:1740:1118#0 1 1 76 51067 51142 [GTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAAT] HWI-EAS406:5:75:1703:1973#0 1 1 76 51097 51172 [TTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCC] HWI-EAS406:6:59:1497:1156#0 1 1 76 51106 51181 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:45:613:569#0 1 1 76 51114 51189 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:6:38:774:1374#0 1 1 76 51119 51194 [TGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAA] HWI-EAS406:7:19:1655:985#0 1 1 76 51119 51194 [GTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAA] HWI-EAS406:6:1:411:322#0 1 1 76 51125 51200 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:60:917:484#0 1 1 76 51126 51201 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:7:45:192:1424#0 1 1 76 51126 51201 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:22:460:1175#0 1 1 76 51127 51202 [TTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGA] HWI-EAS406:7:9:483:12#0 1 1 76 51134 51209 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1024:1704#0 1 1 76 51136 51211 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:7:44:768:1276#0 1 1 76 51136 51211 [GTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGT] HWI-EAS406:7:25:542:1763#0 1 1 76 51139 51214 [TTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTG] HWI-EAS406:7:56:429:836#0 1 1 76 51140 51215 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:51:712:653#0 1 1 76 51142 51217 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:46:769:653#0 1 1 76 51143 51218 [TTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAA] HWI-EAS406:7:28:1567:1843#0 1 1 76 51145 51220 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:31:66:1932#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:6:80:607:669#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:47:37:1870#0 1 1 76 51150 51225 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:57:619:901#0 1 1 76 51150 51225 [TTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGA] HWI-EAS406:5:55:446:1090#0 1 1 76 51156 51231 [CTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAAT] HWI-EAS406:5:71:1271:1404#0 1 1 76 51158 51233 [ACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCAT] HWI-EAS406:7:46:161:1083#0 1 1 76 51162 51237 [GATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGT] HWI-EAS406:6:55:894:421#0 1 1 76 51166 51241 [AATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGG] HWI-EAS406:7:48:228:1846#0 1 1 76 51170 51245 [ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGG] HWI-EAS406:5:59:568:1370#0 1 1 76 51171 51246 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:7:49:1543:1352#0 1 1 76 51177 51252 [TCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAG] HWI-EAS406:5:60:1319:266#0 1 1 76 51179 51254 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:52:727:1470#0 1 1 76 51180 51255 [CAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGG] HWI-EAS406:5:63:1667:1992#0 1 1 76 51181 51256 [ATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTG] HWI-EAS406:5:46:1397:1605#0 1 1 76 51183 51258 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:5:23:1576:1720#0 1 1 76 51186 51261 [TGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATT] HWI-EAS406:7:53:872:761#0 1 1 76 51186 51261 [TTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGT] HWI-EAS406:7:36:218:140#0 1 1 76 51190 51265 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:456:1253#0 1 1 76 51194 51269 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:5:40:683:389#0 1 1 76 51195 51270 [GAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAG] HWI-EAS406:6:99:167:1295#0 1 1 76 51195 51270 [GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTT] HWI-EAS406:7:24:1480:278#0 1 1 76 51205 51280 [GATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTA] HWI-EAS406:6:47:812:175#0 1 1 76 51208 51283 [CTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATAT] HWI-EAS406:7:45:715:611#0 1 1 76 51225 51300 [GGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCC] HWI-EAS406:7:52:777:540#0 1 1 76 51229 51304 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:53:1708:725#0 1 1 76 51233 51308 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:55:1111:1008#0 1 1 76 51233 51308 [TCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCT] HWI-EAS406:7:44:635:681#0 1 1 76 51234 51309 [AGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTA] HWI-EAS406:6:51:1602:1743#0 1 1 76 51243 51318 [AAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATG] HWI-EAS406:7:72:942:1104#0 1 1 76 51252 51327 [TTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTT] HWI-EAS406:5:54:509:734#0 1 1 76 51265 51340 [GCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCA] HWI-EAS406:5:80:717:232#0 1 1 76 51270 51345 [CTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCAC] HWI-EAS406:6:52:1029:1911#0 1 1 76 51271 51346 [TTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTT] HWI-EAS406:6:40:135:217#0 1 1 76 51280 51355 [GTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCAT] HWI-EAS406:7:50:892:1037#0 1 1 76 51286 51361 [TTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATT] HWI-EAS406:7:51:1180:964#0 1 1 76 51294 51369 [TCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTT] HWI-EAS406:5:52:1010:1723#0 1 1 76 51295 51370 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:5:36:629:1477#0 1 1 76 51296 51371 [CATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTC] HWI-EAS406:6:56:196:1560#0 1 1 76 51296 51371 [CCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCG] HWI-EAS406:7:66:1229:1457#0 1 1 76 51303 51378 [TTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA] HWI-EAS406:5:28:1059:907#0 1 1 76 51305 51380 [GCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAG] HWI-EAS406:5:46:395:1707#0 1 1 76 51307 51382 [CTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGG] HWI-EAS406:7:41:1649:828#0 1 1 76 51308 51383 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:7:50:1701:636#0 1 1 76 51317 51392 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:6:97:666:1514#0 1 1 76 51325 51400 [ATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCC] HWI-EAS406:7:79:454:980#0 1 1 76 51325 51400 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:83:1758:1547#0 1 1 76 51327 51402 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:55:1085:812#0 1 1 76 51333 51408 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:45:1784:1703#0 1 1 76 51340 51415 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:75:977:1193#0 1 1 76 51341 51416 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:6:83:23:1147#0 1 1 76 51341 51416 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:5:66:1350:1008#0 1 1 76 51343 51418 [CACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCT] HWI-EAS406:7:40:988:1790#0 1 1 76 51344 51419 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:6:21:1052:487#0 1 1 76 51348 51423 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:53:1085:1630#0 1 1 76 51355 51430 [TGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACT] HWI-EAS406:5:76:504:223#0 1 1 76 51355 51430 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:61:102:1424#0 1 1 76 51356 51431 [ATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTT] HWI-EAS406:7:67:853:1547#0 1 1 76 51357 51432 [TCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTG] HWI-EAS406:5:43:512:2027#0 1 1 76 51358 51433 [CATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGC] HWI-EAS406:6:51:1565:1778#0 1 1 76 51359 51434 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:68:1234:1128#0 1 1 76 51363 51438 [GCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGA] HWI-EAS406:6:28:1631:1290#0 1 1 76 51365 51440 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:41:997:642#0 1 1 76 51367 51442 [ATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACA] HWI-EAS406:5:46:1363:675#0 1 1 76 51367 51442 [CTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTG] HWI-EAS406:7:67:1153:1729#0 1 1 76 51371 51446 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:51:1783:1732#0 1 1 76 51372 51447 [CCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT] HWI-EAS406:7:39:1211:2033#0 1 1 76 51375 51450 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:5:7:1228:400#0 1 1 76 51376 51451 [CCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTT] HWI-EAS406:6:60:780:1892#0 1 1 76 51376 51451 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:6:50:731:984#0 1 1 76 51377 51452 [GAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAA] HWI-EAS406:6:51:108:1422#0 1 1 76 51378 51453 [TGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGC] HWI-EAS406:5:59:144:1944#0 1 1 76 51384 51459 [GTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCT] HWI-EAS406:7:50:397:1516#0 1 1 76 51385 51460 [TTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTA] HWI-EAS406:6:44:1729:1021#0 1 1 76 51386 51461 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:5:65:954:1755#0 1 1 76 51388 51463 [CGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAG] HWI-EAS406:6:57:1789:1580#0 1 1 76 51388 51463 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:44:794:1993#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:5:53:1459:823#0 1 1 76 51389 51464 [GATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGA] HWI-EAS406:6:53:911:1708#0 1 1 76 51389 51464 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:34:1608:163#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:5:43:1600:240#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:6:45:1200:1310#0 1 1 76 51390 51465 [ATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGAT] HWI-EAS406:7:59:1447:1020#0 1 1 76 51390 51465 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:6:43:1110:1150#0 1 1 76 51391 51466 [GAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAG] HWI-EAS406:5:46:1057:798#0 1 1 76 51392 51467 [AATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCT] HWI-EAS406:5:46:1495:1178#0 1 1 76 51394 51469 [ATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTA] HWI-EAS406:7:55:1203:544#0 1 1 76 51395 51470 [TGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAA] HWI-EAS406:7:50:940:1822#0 1 1 76 51396 51471 [CCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATA] HWI-EAS406:5:41:907:1844#0 1 1 76 51398 51473 [CCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAG] HWI-EAS406:7:53:1444:557#0 1 1 76 51399 51474 [CGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGA] HWI-EAS406:7:51:1720:921#0 1 1 76 51400 51475 [GAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGAC] HWI-EAS406:7:85:1682:878#0 1 1 76 51401 51476 [GACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTT] HWI-EAS406:6:55:373:154#0 1 1 76 51403 51478 [AACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTT] HWI-EAS406:5:17:1384:1558#0 1 1 76 51406 51481 [ACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTA] HWI-EAS406:5:55:1012:1598#0 1 1 76 51407 51482 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:64:1284:590#0 1 1 76 51488 51563 [ATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAG] HWI-EAS406:7:41:26:1789#0 1 1 76 51500 51575 [TTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATT] HWI-EAS406:6:53:39:1372#0 1 1 76 51504 51579 [TCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTG] HWI-EAS406:5:42:711:818#0 1 1 76 51505 51580 [GACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGC] HWI-EAS406:5:23:374:1326#0 1 1 76 51514 51589 [ACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT] HWI-EAS406:6:53:1070:1881#0 1 1 76 51515 51590 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:6:44:1471:1754#0 1 1 76 51520 51595 [TGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGG] HWI-EAS406:7:49:1247:784#0 1 1 76 51520 51595 [GTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGA] HWI-EAS406:7:52:523:1250#0 1 1 76 51524 51599 [TTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATA] HWI-EAS406:6:48:1635:1117#0 1 1 76 51526 51601 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:5:50:1396:1724#0 1 1 76 51532 51607 [TATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGA] HWI-EAS406:7:55:1695:1934#0 1 1 76 51532 51607 [ATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGAT] HWI-EAS406:7:75:1084:1280#0 1 1 76 51533 51608 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:5:53:1039:831#0 1 1 76 51534 51609 [TTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGA] HWI-EAS406:5:46:847:740#0 1 1 76 51536 51611 [CAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCAT] HWI-EAS406:6:54:1299:528#0 1 1 76 51540 51615 [AAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATT] HWI-EAS406:5:27:1164:521#0 1 1 76 51541 51616 [ATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTG] HWI-EAS406:6:47:445:273#0 1 1 76 51543 51618 [GCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCAT] HWI-EAS406:7:45:553:1319#0 1 1 76 51547 51622 [CATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATC] HWI-EAS406:7:11:854:1813#0 1 1 76 51548 51623 [TTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCT] HWI-EAS406:5:38:485:1629#0 1 1 76 51550 51625 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:7:45:1007:739#0 1 1 76 51556 51631 [ATAGAGCTTGCTTAGAATTGTGTCTAAGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATAC] HWI-EAS406:5:39:868:1983#0 1 1 76 51561 51636 [GCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATG] HWI-EAS406:7:40:711:530#0 1 1 76 51588 51663 [TGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGT] HWI-EAS406:5:69:29:997#0 1 1 76 51597 51672 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:5:25:1170:1418#0 1 1 76 51598 51673 [GATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTT] HWI-EAS406:6:39:632:1874#0 1 1 76 51598 51673 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:46:1372:1936#0 1 1 76 51602 51677 [GTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCT] HWI-EAS406:5:55:604:688#0 1 1 76 51602 51677 [TGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTT] HWI-EAS406:5:53:1104:1965#0 1 1 76 51605 51680 [GATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTC] HWI-EAS406:5:40:1519:548#0 1 1 76 51606 51681 [ATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCC] HWI-EAS406:7:54:543:798#0 1 1 76 51607 51682 [TTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCT] HWI-EAS406:6:53:520:1012#0 1 1 76 51608 51683 [TCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAG] HWI-EAS406:6:98:1293:1754#0 1 1 76 51612 51687 [CATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGT] HWI-EAS406:5:63:1624:1802#0 1 1 76 51613 51688 [ATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTC] HWI-EAS406:6:8:950:1304#0 1 1 76 51614 51689 [TTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCA] HWI-EAS406:5:61:535:401#0 1 1 76 51615 51690 [TTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAA] HWI-EAS406:5:26:1745:468#0 1 1 76 51616 51691 [TGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAA] HWI-EAS406:6:66:722:1305#0 1 1 76 51617 51692 [CCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAA] HWI-EAS406:7:51:1116:1731#0 1 1 76 51619 51694 [CTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTAT] HWI-EAS406:6:58:303:1017#0 1 1 76 51624 51699 [TAGTTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCA] HWI-EAS406:5:20:238:217#0 1 1 76 51626 51701 [TTCGATACTTGATCACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTC] HWI-EAS406:7:61:801:741#0 1 1 76 51629 51704 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:5:34:186:1817#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:6:50:1685:713#0 1 1 76 51643 51718 [ACCCAAGGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCT] HWI-EAS406:7:46:986:941#0 1 1 76 51643 51718 [GGTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTT] HWI-EAS406:5:53:18:1405#0 1 1 76 51649 51724 [GTCTAATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTA] HWI-EAS406:6:66:358:148#0 1 1 76 51650 51725 [ATCCCTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT] HWI-EAS406:6:65:348:565#0 1 1 76 51655 51730 [CCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAAC] HWI-EAS406:5:45:738:957#0 1 1 76 51665 51740 [TTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCA] HWI-EAS406:6:38:975:65#0 1 1 76 51677 51752 [CATAGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATC] HWI-EAS406:6:48:1130:1880#0 1 1 76 51728 51803 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:5:48:881:559#0 1 1 76 51734 51809 [TTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAG] HWI-EAS406:7:49:622:558#0 1 1 76 51734 51809 [ACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTG] HWI-EAS406:7:54:742:672#0 1 1 76 51739 51814 [ATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTC] HWI-EAS406:5:44:1175:996#0 1 1 76 51743 51818 [TCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCG] HWI-EAS406:7:39:1740:231#0 1 1 76 51744 51819 [AAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACA] HWI-EAS406:6:46:1377:1168#0 1 1 76 51747 51822 [AATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAA] HWI-EAS406:7:64:25:503#0 1 1 76 51748 51823 [TCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATC] HWI-EAS406:5:4:309:1035#0 1 1 76 51750 51825 [GCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACT] HWI-EAS406:5:4:776:1060#0 1 1 76 51759 51834 [ACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTAC] HWI-EAS406:5:65:809:1514#0 1 1 76 51761 51836 [CTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACA] HWI-EAS406:5:60:1269:1183#0 1 1 76 51762 51837 [TAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAAC] HWI-EAS406:5:41:1628:1655#0 1 1 76 51764 51839 [GATTAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACAT] HWI-EAS406:6:33:424:176#0 1 1 76 51766 51841 [TAAGTGAGTACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTG] HWI-EAS406:5:61:1080:471#0 1 1 76 51769 51844 [TACTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGA] HWI-EAS406:5:40:1290:1233#0 1 1 76 51777 51852 [CTTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGC] HWI-EAS406:6:40:1036:2014#0 1 1 76 51779 51854 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:36:1245:927#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:52:297:1809#0 1 1 76 51780 51855 [TTGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCC] HWI-EAS406:6:59:1054:1320#0 1 1 76 51780 51855 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:5:46:940:679#0 1 1 76 51781 51856 [TGCATTCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCT] HWI-EAS406:7:82:46:1850#0 1 1 76 51781 51856 [TCTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAA] HWI-EAS406:7:30:584:783#0 1 1 76 51786 51861 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:3:1035:1388#0 1 1 76 51787 51862 [CTCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAA] HWI-EAS406:6:30:1615:1913#0 1 1 76 51787 51862 [TCAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAAC] HWI-EAS406:6:61:345:943#0 1 1 76 51788 51863 [CAGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACT] HWI-EAS406:5:52:1113:1467#0 1 1 76 51789 51864 [AGTGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTC] HWI-EAS406:5:49:1366:809#0 1 1 76 51790 51865 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:5:83:566:978#0 1 1 76 51792 51867 [TGCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCT] HWI-EAS406:6:44:1301:33#0 1 1 76 51792 51867 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1337:2008#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:38:1338:2010#0 1 1 76 51793 51868 [GCTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTA] HWI-EAS406:6:44:1177:1897#0 1 1 76 51793 51868 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:39:726:1083#0 1 1 76 51794 51869 [CTTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAA] HWI-EAS406:5:90:1469:1403#0 1 1 76 51794 51869 [TTTGATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC] HWI-EAS406:6:84:547:967#0 1 1 76 51795 51870 [GATATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATC] HWI-EAS406:7:79:983:987#0 1 1 76 51798 51873 [CAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCG] HWI-EAS406:7:48:1134:1483#0 1 1 76 51807 51882 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:6:61:1073:816#0 1 1 76 51810 51885 [AACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCG] HWI-EAS406:7:44:468:1233#0 1 1 76 51810 51885 [CTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTT] HWI-EAS406:5:42:701:241#0 1 1 76 51812 51887 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:5:54:1071:668#0 1 1 76 51815 51890 [GTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCC] HWI-EAS406:7:57:1749:546#0 1 1 76 51815 51890 [TTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCA] HWI-EAS406:6:2:1018:1610#0 1 1 76 51816 51891 [CAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTC] HWI-EAS406:5:70:667:1808#0 1 1 76 51821 51896 [AATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCT] HWI-EAS406:5:66:1372:1962#0 1 1 76 51822 51897 [CTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAG] HWI-EAS406:5:46:306:950#0 1 1 76 51825 51900 [TCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTA] HWI-EAS406:5:12:265:1242#0 1 1 76 51827 51902 [TATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGA] HWI-EAS406:5:31:812:415#0 1 1 76 51829 51904 [ATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGAT] HWI-EAS406:5:50:1699:1414#0 1 1 76 51830 51905 [ACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTT] HWI-EAS406:7:95:127:1794#0 1 1 76 51832 51907 [ACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACAT] HWI-EAS406:7:44:537:1071#0 1 1 76 51838 51913 [TGTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGA] HWI-EAS406:6:60:856:1143#0 1 1 76 51843 51918 [GTCTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGAT] HWI-EAS406:5:21:1482:1293#0 1 1 76 51844 51919 [CTTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTT] HWI-EAS406:5:54:1701:560#0 1 1 76 51846 51921 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:5:86:48:1444#0 1 1 76 51847 51922 [TTAGGAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTA] HWI-EAS406:7:55:910:185#0 1 1 76 51847 51922 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:14:172:1797#0 1 1 76 51851 51926 [GAGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCA] HWI-EAS406:7:60:333:510#0 1 1 76 51851 51926 [AGCCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCAC] HWI-EAS406:7:27:1164:411#0 1 1 76 51852 51927 [CCTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTT] HWI-EAS406:7:61:206:1212#0 1 1 76 51854 51929 [CTTGAAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTG] HWI-EAS406:6:80:363:1516#0 1 1 76 51855 51930 [AAAACTCCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTG] HWI-EAS406:7:7:1668:1334#0 1 1 76 51859 51934 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:152:1641#0 1 1 76 51865 51940 [CCTAACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA] HWI-EAS406:7:9:154:1642#0 1 1 76 51865 51940 [ACATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTC] HWI-EAS406:6:62:315:1419#0 1 1 76 51869 51944 [AAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTT] HWI-EAS406:5:47:636:1051#0 1 1 76 51874 51949 [TTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTAT] HWI-EAS406:6:74:1253:670#0 1 1 76 51877 51952 [TGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATT] HWI-EAS406:5:25:997:1630#0 1 1 76 51878 51953 [GGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTT] HWI-EAS406:6:78:489:1142#0 1 1 76 51879 51954 [GCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCT] HWI-EAS406:5:34:1146:1143#0 1 1 76 51882 51957 [CCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTT] HWI-EAS406:7:62:1125:1571#0 1 1 76 51883 51958 [CGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTT] HWI-EAS406:5:93:591:1425#0 1 1 76 51884 51959 [TTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTG] HWI-EAS406:6:19:1597:771#0 1 1 76 51886 51961 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:6:43:608:993#0 1 1 76 51887 51962 [TGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGT] HWI-EAS406:7:13:332:1432#0 1 1 76 51887 51962 [GCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTT] HWI-EAS406:7:39:1330:1144#0 1 1 76 51888 51963 [CAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTAC] HWI-EAS406:7:73:713:226#0 1 1 76 51890 51965 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:52:564:1215#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:6:77:1015:272#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:2:735:995#0 1 1 76 51891 51966 [AAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACT] HWI-EAS406:7:67:1426:1561#0 1 1 76 51891 51966 [TTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGAT] HWI-EAS406:7:89:27:1856#0 1 1 76 51894 51969 [CTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTC] HWI-EAS406:7:88:159:600#0 1 1 76 51896 51971 [TGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCT] HWI-EAS406:6:47:520:1926#0 1 1 76 51897 51972 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:59:250:1202#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:6:63:300:431#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:80:1521:675#0 1 1 76 51898 51973 [GAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTC] HWI-EAS406:7:87:892:862#0 1 1 76 51898 51973 [GTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTT] HWI-EAS406:6:71:1176:442#0 1 1 76 51900 51975 [TTGAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCA] HWI-EAS406:5:82:1083:40#0 1 1 76 51906 51981 [GAACATTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACC] HWI-EAS406:6:30:1392:410#0 1 1 76 51908 51983 [TTGAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCT] HWI-EAS406:6:53:894:1026#0 1 1 76 51913 51988 [GAGATTTAGTCACTTGCTTGAGACTAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTT] HWI-EAS406:5:81:1562:328#0 1 1 76 51915 51990 [TAAGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAG] HWI-EAS406:6:79:1028:1016#0 1 1 76 51939 52014 [TCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGC] HWI-EAS406:5:33:751:478#0 1 1 76 51972 52047 [TCTTCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCA] HWI-EAS406:5:52:433:445#0 1 1 76 51976 52051 [TCACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGAC] HWI-EAS406:6:81:1602:1312#0 1 1 76 51979 52054 [CACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACA] HWI-EAS406:7:58:1056:909#0 1 1 76 51980 52055 [ACCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACAT] HWI-EAS406:6:65:1550:1808#0 1 1 76 51981 52056 [CCTCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATC] HWI-EAS406:5:26:619:589#0 1 1 76 51982 52057 [TCCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAG] HWI-EAS406:5:25:1540:854#0 1 1 76 51984 52059 [CCCTTTAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGA] HWI-EAS406:6:44:729:758#0 1 1 76 51985 52060 [TAATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTT] HWI-EAS406:7:72:764:515#0 1 1 76 51990 52065 [ATCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAG] HWI-EAS406:6:26:987:409#0 1 1 76 51992 52067 [TCTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGA] HWI-EAS406:5:59:1498:1758#0 1 1 76 51993 52068 [CTACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAG] HWI-EAS406:6:43:26:349#0 1 1 76 51994 52069 [TACAGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGA] HWI-EAS406:6:4:373:1470#0 1 1 76 51995 52070 [AGGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAG] HWI-EAS406:5:79:571:1802#0 1 1 76 51998 52073 [GGTGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGA] HWI-EAS406:7:1:743:1712#0 1 1 76 51999 52074 [TGTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGT] HWI-EAS406:7:33:502:813#0 1 1 76 52001 52076 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:6:74:1764:1670#0 1 1 76 52002 52077 [GTATGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTG] HWI-EAS406:7:27:1272:939#0 1 1 76 52002 52077 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:30:1002:764#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:5:86:1501:1809#0 1 1 76 52005 52080 [TGAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC] HWI-EAS406:6:95:1326:856#0 1 1 76 52005 52080 [GAACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCT] HWI-EAS406:5:10:1349:1560#0 1 1 76 52006 52081 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:5:39:597:1883#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:36:536:1898#0 1 1 76 52007 52082 [AACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTA] HWI-EAS406:6:68:1133:1558#0 1 1 76 52007 52082 [ACTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAG] HWI-EAS406:5:78:1629:923#0 1 1 76 52008 52083 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:5:64:51:2029#0 1 1 76 52009 52084 [CTTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGA] HWI-EAS406:6:83:1173:1390#0 1 1 76 52009 52084 [TTGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAA] HWI-EAS406:5:40:882:1796#0 1 1 76 52010 52085 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:5:88:516:1281#0 1 1 76 52012 52087 [GAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAAT] HWI-EAS406:6:64:491:681#0 1 1 76 52012 52087 [AGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATA] HWI-EAS406:7:84:1212:1365#0 1 1 76 52013 52088 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:5:40:222:1844#0 1 1 76 52014 52089 [GGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAG] HWI-EAS406:7:72:699:1313#0 1 1 76 52014 52089 [GAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGA] HWI-EAS406:6:64:307:369#0 1 1 76 52015 52090 [AGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAA] HWI-EAS406:6:60:133:1637#0 1 1 76 52016 52091 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:5:75:1124:1493#0 1 1 76 52017 52092 [GCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAG] HWI-EAS406:6:56:587:1464#0 1 1 76 52017 52092 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:5:35:1653:2022#0 1 1 76 52018 52093 [CAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGA] HWI-EAS406:7:68:517:1165#0 1 1 76 52018 52093 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:16:1056:1081#0 1 1 76 52020 52095 [GGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGA] HWI-EAS406:5:19:1121:357#0 1 1 76 52020 52095 [GGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAG] HWI-EAS406:7:34:419:1654#0 1 1 76 52022 52097 [TCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAA] HWI-EAS406:6:73:130:1926#0 1 1 76 52024 52099 [CCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAG] HWI-EAS406:6:8:582:399#0 1 1 76 52025 52100 [CATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGA] HWI-EAS406:6:89:579:160#0 1 1 76 52026 52101 [ATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAG] HWI-EAS406:6:41:580:1400#0 1 1 76 52027 52102 [TCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGC] HWI-EAS406:5:17:398:669#0 1 1 76 52028 52103 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:6:84:1266:1109#0 1 1 76 52029 52104 [CAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCA] HWI-EAS406:7:5:999:1547#0 1 1 76 52029 52104 [AAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAA] HWI-EAS406:5:14:148:1373#0 1 1 76 52030 52105 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:2:1699:806#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:5:45:1130:1897#0 1 1 76 52031 52106 [AACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAAC] HWI-EAS406:6:46:377:1707#0 1 1 76 52031 52106 [CCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAG] HWI-EAS406:7:48:1774:327#0 1 1 76 52033 52108 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:5:12:1301:601#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:7:1601:2011#0 1 1 76 52036 52111 [AGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCT] HWI-EAS406:7:64:508:1598#0 1 1 76 52036 52111 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:5:1694:223#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:47:902:645#0 1 1 76 52037 52112 [GTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTC] HWI-EAS406:5:70:1378:1151#0 1 1 76 52037 52112 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:5:10:1713:1450#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:6:59:183:1429#0 1 1 76 52039 52114 [TCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCAC] HWI-EAS406:7:72:1029:862#0 1 1 76 52039 52114 [ATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGC] HWI-EAS406:5:73:1557:501#0 1 1 76 52043 52118 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:5:32:315:118#0 1 1 76 52046 52121 [GCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGA] HWI-EAS406:7:22:1366:1478#0 1 1 76 52046 52121 [CTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAG] HWI-EAS406:7:11:1474:1191#0 1 1 76 52047 52122 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:6:78:12:1461#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:5:1068:1061#0 1 1 76 52048 52123 [TGCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGA] HWI-EAS406:7:33:1476:1754#0 1 1 76 52048 52123 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:5:9:1339:499#0 1 1 76 52049 52124 [GCAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGAT] HWI-EAS406:6:30:958:346#0 1 1 76 52049 52124 [CAGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATT] HWI-EAS406:7:65:1412:1398#0 1 1 76 52050 52125 [AGACATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTG] HWI-EAS406:6:22:214:1178#0 1 1 76 52051 52126 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:6:70:161:1056#0 1 1 76 52054 52129 [CATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGT] HWI-EAS406:7:18:1536:1583#0 1 1 76 52054 52129 [ATCAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTA] HWI-EAS406:6:46:1138:842#0 1 1 76 52055 52130 [CAGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACT] HWI-EAS406:5:27:303:1774#0 1 1 76 52057 52132 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:5:12:1404:854#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:6:54:1784:1747#0 1 1 76 52058 52133 [AGAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTG] HWI-EAS406:7:35:720:1415#0 1 1 76 52058 52133 [GAGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGA] HWI-EAS406:5:23:1243:48#0 1 1 76 52059 52134 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:18:1525:653#0 1 1 76 52060 52135 [AGCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGAT] HWI-EAS406:5:40:245:523#0 1 1 76 52060 52135 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:5:35:477:859#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:12:1141:652#0 1 1 76 52061 52136 [GCTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATA] HWI-EAS406:7:73:1171:1047#0 1 1 76 52061 52136 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:5:17:517:1752#0 1 1 76 52062 52137 [CTTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATAT] HWI-EAS406:6:95:231:1845#0 1 1 76 52062 52137 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:5:67:1358:1820#0 1 1 76 52063 52138 [TTTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATG] HWI-EAS406:7:100:638:523#0 1 1 76 52063 52138 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:6:71:494:1059#0 1 1 76 52064 52139 [TTAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGG] HWI-EAS406:7:79:1404:1143#0 1 1 76 52064 52139 [TAGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGG] HWI-EAS406:5:91:969:722#0 1 1 76 52065 52140 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:5:37:1425:906#0 1 1 76 52066 52141 [AGAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGA] HWI-EAS406:7:68:1118:1565#0 1 1 76 52066 52141 [GAGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAG] HWI-EAS406:5:20:211:742#0 1 1 76 52067 52142 [AGAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGA] HWI-EAS406:7:61:827:2#0 1 1 76 52068 52143 [GAGAGAGTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGAC] HWI-EAS406:7:65:1213:1604#0 1 1 76 52069 52144 [GTGTGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT] HWI-EAS406:7:17:207:1549#0 1 1 76 52075 52150 [TGCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAA] HWI-EAS406:5:73:656:1860#0 1 1 76 52078 52153 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:6:54:1183:1352#0 1 1 76 52079 52154 [GCTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAA] HWI-EAS406:7:37:993:682#0 1 1 76 52079 52154 [CTAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAA] HWI-EAS406:7:74:1122:1374#0 1 1 76 52080 52155 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:6:94:713:1830#0 1 1 76 52081 52156 [TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAAC] HWI-EAS406:7:9:1499:1250#0 1 1 76 52081 52156 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:65:1142:350#0 1 1 76 52083 52158 [GAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCA] HWI-EAS406:5:88:1031:1762#0 1 1 76 52083 52158 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:20:950:1457#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:48:827:2014#0 1 1 76 52084 52159 [AAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAA] HWI-EAS406:6:72:1667:1616#0 1 1 76 52084 52159 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:5:93:525:195#0 1 1 76 52085 52160 [AATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAAC] HWI-EAS406:7:32:1304:195#0 1 1 76 52085 52160 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:5:2:1649:1295#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:6:33:800:1496#0 1 1 76 52087 52162 [TAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAG] HWI-EAS406:7:85:342:1989#0 1 1 76 52087 52162 [AGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGC] HWI-EAS406:7:70:1503:1950#0 1 1 76 52088 52163 [GAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCG] HWI-EAS406:7:72:1172:170#0 1 1 76 52089 52164 [AAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGA] HWI-EAS406:5:60:842:1890#0 1 1 76 52090 52165 [AGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAG] HWI-EAS406:5:67:1293:1622#0 1 1 76 52091 52166 [GAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGC] HWI-EAS406:7:4:588:842#0 1 1 76 52092 52167 [AGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCA] HWI-EAS406:6:29:322:1841#0 1 1 76 52093 52168 [GAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAG] HWI-EAS406:7:15:1792:478#0 1 1 76 52094 52169 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:7:1030:1738#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:41:708:742#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:5:70:671:1443#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:59:1396:1065#0 1 1 76 52095 52170 [AAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGC] HWI-EAS406:7:76:508:213#0 1 1 76 52095 52170 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:5:38:507:1944#0 1 1 76 52096 52171 [AGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCT] HWI-EAS406:7:68:957:1437#0 1 1 76 52096 52171 [GAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTC] HWI-EAS406:6:25:726:1823#0 1 1 76 52097 52172 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:6:20:1401:1637#0 1 1 76 52098 52173 [AAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCG] HWI-EAS406:7:81:1000:1464#0 1 1 76 52098 52173 [AGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGA] HWI-EAS406:5:14:933:1952#0 1 1 76 52099 52174 [GAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGAT] HWI-EAS406:5:30:760:323#0 1 1 76 52100 52175 [CAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCA] HWI-EAS406:6:27:61:873#0 1 1 76 52103 52178 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:24:633:991#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:92:467:1920#0 1 1 76 52106 52181 [CAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTG] HWI-EAS406:7:100:519:398#0 1 1 76 52106 52181 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:26:697:1150#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:5:31:181:887#0 1 1 76 52107 52182 [AGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGG] HWI-EAS406:7:10:575:1888#0 1 1 76 52107 52182 [GGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGC] HWI-EAS406:5:73:1149:233#0 1 1 76 52108 52183 [GCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCA] HWI-EAS406:5:55:1257:1795#0 1 1 76 52109 52184 [CTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCAC] HWI-EAS406:6:65:1394:866#0 1 1 76 52110 52185 [TCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACT] HWI-EAS406:5:64:1536:142#0 1 1 76 52111 52186 [ACTTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTA] HWI-EAS406:6:94:552:341#0 1 1 76 52113 52188 [TTGCAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACG] HWI-EAS406:5:92:1176:518#0 1 1 76 52115 52190 [CAGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACC] HWI-EAS406:6:93:1111:754#0 1 1 76 52118 52193 [AGAGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCG] HWI-EAS406:7:8:1159:1896#0 1 1 76 52119 52194 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:5:80:570:6#0 1 1 76 52121 52196 [AGATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCC] HWI-EAS406:7:18:1662:1508#0 1 1 76 52121 52196 [GATTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCC] HWI-EAS406:5:6:168:1581#0 1 1 76 52122 52197 [TTGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCA] HWI-EAS406:7:18:1237:879#0 1 1 76 52124 52199 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:3:1517:359#0 1 1 76 52125 52200 [TGAGTACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAA] HWI-EAS406:7:47:1298:719#0 1 1 76 52125 52200 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:5:27:1331:1024#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:25:283:1331#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:6:100:833:1685#0 1 1 76 52129 52204 [TACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATT] HWI-EAS406:7:100:1443:529#0 1 1 76 52129 52204 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:6:54:764:946#0 1 1 76 52130 52205 [ACTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTC] HWI-EAS406:7:53:686:1832#0 1 1 76 52130 52205 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:56:623:1125#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:5:86:174:1312#0 1 1 76 52131 52206 [CTGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCA] HWI-EAS406:6:64:1283:110#0 1 1 76 52131 52206 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:5:87:981:221#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:48:1199:1626#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:67:691:878#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:6:73:1090:1807#0 1 1 76 52132 52207 [TGATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCAT] HWI-EAS406:7:13:1294:1416#0 1 1 76 52132 52207 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:5:83:1077:920#0 1 1 76 52134 52209 [ATATGGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGG] HWI-EAS406:6:64:465:861#0 1 1 76 52134 52209 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:5:67:422:1731#0 1 1 76 52138 52213 [GGGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCAT] HWI-EAS406:7:34:1113:408#0 1 1 76 52138 52213 [GGAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATA] HWI-EAS406:7:13:139:1696#0 1 1 76 52139 52214 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:15:890:3#0 1 1 76 52140 52215 [GAGACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAG] HWI-EAS406:5:28:1255:1618#0 1 1 76 52140 52215 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:5:59:1773:1125#0 1 1 76 52142 52217 [GACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGAT] HWI-EAS406:6:10:1600:1789#0 1 1 76 52142 52217 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:10:430:902#0 1 1 76 52143 52218 [ACATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATT] HWI-EAS406:5:31:579:224#0 1 1 76 52143 52218 [CATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTG] HWI-EAS406:7:65:1779:423#0 1 1 76 52144 52219 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:5:27:1246:1460#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:38:426:1977#0 1 1 76 52145 52220 [ATACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG] HWI-EAS406:7:39:1537:1000#0 1 1 76 52145 52220 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:19:1617:1113#0 1 1 76 52147 52222 [ACCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGA] HWI-EAS406:7:64:1133:462#0 1 1 76 52147 52222 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:5:10:1084:1542#0 1 1 76 52148 52223 [CCTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAA] HWI-EAS406:6:36:1502:1446#0 1 1 76 52148 52223 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:21:1461:1189#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:5:86:1317:698#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:23:1288:392#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:6:88:1084:268#0 1 1 76 52149 52224 [CTCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAAT] HWI-EAS406:7:2:715:1936#0 1 1 76 52149 52224 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:5:89:1196:1698#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:8:962:500#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:22:86:1843#0 1 1 76 52150 52225 [TCAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATC] HWI-EAS406:7:65:1076:100#0 1 1 76 52150 52225 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:31:1000:1428#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:5:83:1606:783#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:24:1405:1720#0 1 1 76 52151 52226 [CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCC] HWI-EAS406:6:86:412:478#0 1 1 76 52151 52226 [AAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGA] HWI-EAS406:7:45:921:1899#0 1 1 76 52153 52228 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:18:1405:416#0 1 1 76 52154 52229 [AACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAG] HWI-EAS406:7:77:898:1160#0 1 1 76 52154 52229 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:5:69:705:951#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:6:59:917:2034#0 1 1 76 52156 52231 [CCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCA] HWI-EAS406:7:9:781:1662#0 1 1 76 52156 52231 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:5:71:400:921#0 1 1 76 52157 52232 [CAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCAC] HWI-EAS406:7:67:181:1796#0 1 1 76 52157 52232 [AACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACC] HWI-EAS406:6:27:521:1119#0 1 1 76 52158 52233 [ACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCC] HWI-EAS406:5:71:343:664#0 1 1 76 52159 52234 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:5:39:281:1500#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:6:74:1508:965#0 1 1 76 52160 52235 [CAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCG] HWI-EAS406:7:9:1222:1239#0 1 1 76 52160 52235 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:78:223:715#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:5:84:1052:218#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:17:484:1798#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:53:1251:1786#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:63:1270:309#0 1 1 76 52161 52236 [AGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGC] HWI-EAS406:6:79:386:1740#0 1 1 76 52161 52236 [GCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCT] HWI-EAS406:7:84:1292:1968#0 1 1 76 52162 52237 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:17:1646:1076#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:5:85:1195:1727#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:66:1164:987#0 1 1 76 52163 52238 [CGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTG] HWI-EAS406:6:81:1119:760#0 1 1 76 52163 52238 [AGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTG] HWI-EAS406:5:18:780:281#0 1 1 76 52165 52240 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:6:73:1413:1743#0 1 1 76 52166 52241 [GCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGG] HWI-EAS406:7:16:1149:400#0 1 1 76 52166 52241 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:5:57:651:1240#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:39:1129:669#0 1 1 76 52167 52242 [CAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGC] HWI-EAS406:7:73:857:713#0 1 1 76 52167 52242 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:5:85:1122:1536#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:77:576:1127#0 1 1 76 52169 52244 [GCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAG] HWI-EAS406:6:88:9:511#0 1 1 76 52169 52244 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:6:69:1740:1649#0 1 1 76 52172 52247 [CGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCA] HWI-EAS406:7:33:131:1634#0 1 1 76 52172 52247 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:5:73:54:1105#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:6:83:1007:1328#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:24:1321:2010#0 1 1 76 52173 52248 [GATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAA] HWI-EAS406:7:33:262:1157#0 1 1 76 52173 52248 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:5:32:335:1336#0 1 1 76 52174 52249 [ATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAAC] HWI-EAS406:7:92:1537:1436#0 1 1 76 52174 52249 [TCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACA] HWI-EAS406:6:39:815:1207#0 1 1 76 52175 52250 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:5:46:793:1726#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:12:251:705#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:31:1436:1202#0 1 1 76 52176 52251 [CCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAA] HWI-EAS406:7:62:333:1365#0 1 1 76 52176 52251 [CATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAAC] HWI-EAS406:5:23:1574:1413#0 1 1 76 52177 52252 [ATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACT] HWI-EAS406:7:40:531:470#0 1 1 76 52178 52253 [TTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTT] HWI-EAS406:7:45:1616:849#0 1 1 76 52179 52254 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:6:92:1396:1272#0 1 1 76 52180 52255 [TGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTT] HWI-EAS406:7:26:833:1510#0 1 1 76 52180 52255 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:16:1380:1086#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:59:1530:1196#0 1 1 76 52181 52256 [GGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTG] HWI-EAS406:6:87:1126:429#0 1 1 76 52181 52256 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:24:1147:1664#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:50:815:1716#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:5:59:938:1038#0 1 1 76 52182 52257 [GCACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGA] HWI-EAS406:6:24:422:883#0 1 1 76 52182 52257 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:5:22:1548:492#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:70:166:1464#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:74:652:283#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:6:82:460:1457#0 1 1 76 52184 52259 [ACTTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGA] HWI-EAS406:7:11:567:915#0 1 1 76 52184 52259 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:5:75:1704:1180#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:6:76:954:1728#0 1 1 76 52186 52261 [TTACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATC] HWI-EAS406:7:85:664:780#0 1 1 76 52186 52261 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:6:61:1372:634#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:13:523:1416#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:17:797:359#0 1 1 76 52187 52262 [TACGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCA] HWI-EAS406:7:48:709:1660#0 1 1 76 52187 52262 [CGACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAA] HWI-EAS406:6:88:356:1840#0 1 1 76 52189 52264 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:5:76:727:1411#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:6:20:1545:1827#0 1 1 76 52190 52265 [GACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAAT] HWI-EAS406:7:53:143:1483#0 1 1 76 52190 52265 [ACCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATC] HWI-EAS406:5:90:738:799#0 1 1 76 52191 52266 [CCGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCA] HWI-EAS406:7:88:1091:992#0 1 1 76 52192 52267 [CGCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAG] HWI-EAS406:5:58:545:1977#0 1 1 76 52193 52268 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:5:97:592:546#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:19:774:1380#0 1 1 76 52194 52269 [GCCCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGG] HWI-EAS406:7:100:531:1821#0 1 1 76 52194 52269 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:6:569:1398#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:14:421:609#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:5:46:1004:1159#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:11:647:1264#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:6:40:521:1504#0 1 1 76 52196 52271 [CCCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGAC] HWI-EAS406:7:89:1047:871#0 1 1 76 52196 52271 [CCAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACT] HWI-EAS406:6:51:982:888#0 1 1 76 52197 52272 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:5:25:136:113#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:41:735:977#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:6:80:329:1778#0 1 1 76 52198 52273 [CAACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTC] HWI-EAS406:7:82:1261:1408#0 1 1 76 52198 52273 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:54:1022:1658#0 1 1 76 52200 52275 [ACATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCT] HWI-EAS406:6:99:1131:851#0 1 1 76 52200 52275 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:2:135:1661#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:7:866:337#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:5:64:463:1458#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:5:1647:1482#0 1 1 76 52201 52276 [CATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTC] HWI-EAS406:7:84:176:462#0 1 1 76 52201 52276 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:5:34:505:1686#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:6:1746:427#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:6:25:1017:1385#0 1 1 76 52202 52277 [ATTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCA] HWI-EAS406:7:35:1369:1740#0 1 1 76 52202 52277 [TTCATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAA] HWI-EAS406:5:51:532:1851#0 1 1 76 52203 52278 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:6:12:128:1246#0 1 1 76 52206 52281 [ATGGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGT] HWI-EAS406:7:87:839:52#0 1 1 76 52206 52281 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:17:760:1366#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:5:37:901:1209#0 1 1 76 52208 52283 [GGTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGA] HWI-EAS406:7:80:963:1384#0 1 1 76 52208 52283 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:5:17:1550:1566#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:53:1580#0 1 1 76 52209 52284 [GTCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGAT] HWI-EAS406:6:10:65:1000#0 1 1 76 52209 52284 [TCATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATC] HWI-EAS406:5:78:758:151#0 1 1 76 52210 52285 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:44:902:842#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:5:90:598:451#0 1 1 76 52211 52286 [CATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCG] HWI-EAS406:6:87:265:605#0 1 1 76 52211 52286 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:6:40:974:965#0 1 1 76 52212 52287 [ATAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGA] HWI-EAS406:7:24:1732:457#0 1 1 76 52212 52287 [TAGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAG] HWI-EAS406:7:6:88:1716#0 1 1 76 52213 52288 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:16:939:403#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:57:458:1574#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:5:58:1137:1204#0 1 1 76 52214 52289 [AGATTGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGA] HWI-EAS406:7:83:260:373#0 1 1 76 52214 52289 [TGGGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAA] HWI-EAS406:5:29:552:681#0 1 1 76 52218 52293 [GGAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACA] HWI-EAS406:7:52:1630:1850#0 1 1 76 52220 52295 [AATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAG] HWI-EAS406:7:1:673:233#0 1 1 76 52222 52297 [TCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTA] HWI-EAS406:7:60:720:349#0 1 1 76 52224 52299 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:5:37:1471:715#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:6:87:1099:551#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:32:296:209#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:34:730:917#0 1 1 76 52225 52300 [CCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTAT] HWI-EAS406:7:40:1079:1925#0 1 1 76 52225 52300 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:5:28:502:1523#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:11:1160:1199#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:6:23:620:280#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:5:406:1479#0 1 1 76 52227 52302 [GAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCA] HWI-EAS406:7:23:1311:329#0 1 1 76 52227 52302 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:5:59:154:1118#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:6:4:1519:1520#0 1 1 76 52230 52305 [CACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGG] HWI-EAS406:7:13:1280:1416#0 1 1 76 52230 52305 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:34:1624:1554#0 1 1 76 52231 52306 [ACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGC] HWI-EAS406:5:64:291:995#0 1 1 76 52231 52306 [CCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTT] HWI-EAS406:5:29:1240:1061#0 1 1 76 52233 52308 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:54:1258:578#0 1 1 76 52234 52309 [CGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTG] HWI-EAS406:5:71:1016:982#0 1 1 76 52234 52309 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:5:82:1040:1850#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:23:1181:492#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:6:76:1486:1891#0 1 1 76 52236 52311 [CTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGC] HWI-EAS406:7:52:643:2006#0 1 1 76 52236 52311 [GTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTC] HWI-EAS406:5:67:876:1061#0 1 1 76 52238 52313 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:6:99:364:1232#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:14:1418:1067#0 1 1 76 52240 52315 [GGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTA] HWI-EAS406:7:39:427:1772#0 1 1 76 52240 52315 [GCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAG] HWI-EAS406:5:35:1482:512#0 1 1 76 52241 52316 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:5:12:711:509#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:6:22:715:265#0 1 1 76 52242 52317 [CAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGA] HWI-EAS406:7:98:1452:2014#0 1 1 76 52242 52317 [AGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAG] HWI-EAS406:5:11:996:1746#0 1 1 76 52243 52318 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:86:758:1262#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:6:98:1007:1105#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:34:441:1191#0 1 1 76 52245 52320 [CCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGA] HWI-EAS406:7:83:773:524#0 1 1 76 52245 52320 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:6:23:1360:584#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:65:1518:1039#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:78:1116:1370#0 1 1 76 52246 52321 [CAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGAT] HWI-EAS406:7:97:810:1277#0 1 1 76 52246 52321 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:30:537:400#0 1 1 76 52247 52322 [AACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATC] HWI-EAS406:7:43:275:744#0 1 1 76 52247 52322 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:5:13:919:1120#0 1 1 76 52248 52323 [ACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCC] HWI-EAS406:6:25:1022:1875#0 1 1 76 52248 52323 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:1:1367:996#0 1 1 76 52249 52324 [CAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCA] HWI-EAS406:6:14:1324:228#0 1 1 76 52249 52324 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:5:5:821:1497#0 1 1 76 52250 52325 [AACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCAT] HWI-EAS406:7:6:193:1715#0 1 1 76 52250 52325 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:5:78:433:497#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:6:52:591:654#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:35:1338:991#0 1 1 76 52251 52326 [ACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATT] HWI-EAS406:7:56:524:1938#0 1 1 76 52251 52326 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:6:68:1629:2018#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:21:978:238#0 1 1 76 52252 52327 [CTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTT] HWI-EAS406:7:64:586:999#0 1 1 76 52252 52327 [TTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTG] HWI-EAS406:6:47:1172:963#0 1 1 76 52253 52328 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:11:1163:662#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:5:36:494:638#0 1 1 76 52254 52329 [TTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGA] HWI-EAS406:7:70:268:1648#0 1 1 76 52254 52329 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:7:1315:1936#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:29:913:1247#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:5:61:740:1158#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:6:5:187:357#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:4:282:595#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:12:213:2011#0 1 1 76 52255 52330 [TGAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGAT] HWI-EAS406:7:78:1244:1499#0 1 1 76 52255 52330 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:62:1474:1477#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:5:73:667:2#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:29:1569:1233#0 1 1 76 52256 52331 [GAGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATC] HWI-EAS406:7:61:153:379#0 1 1 76 52256 52331 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:5:90:921:863#0 1 1 76 52257 52332 [AGATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCA] HWI-EAS406:7:31:409:762#0 1 1 76 52257 52332 [GATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCAC] HWI-EAS406:5:45:1329:265#0 1 1 76 52258 52333 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:5:84:1096:658#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:6:76:1047:245#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:18:1148:2023#0 1 1 76 52259 52334 [ATCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACT] HWI-EAS406:7:58:1579:1747#0 1 1 76 52259 52334 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:13:590:1308#0 1 1 76 52260 52335 [TCAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTT] HWI-EAS406:7:71:1211:959#0 1 1 76 52260 52335 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:48:774:839#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:5:64:134:629#0 1 1 76 52261 52336 [CAAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTG] HWI-EAS406:7:40:1581:1123#0 1 1 76 52261 52336 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:17:691:1717#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:31:1311:911#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:5:71:1388:1286#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:15:1153:993#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:69:684:116#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:6:79:930:176#0 1 1 76 52262 52337 [AAATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGG] HWI-EAS406:7:16:681:551#0 1 1 76 52262 52337 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:6:83:1596:302#0 1 1 76 52263 52338 [AATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGA] HWI-EAS406:7:38:1664:916#0 1 1 76 52263 52338 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:5:7:1046:440#0 1 1 76 52264 52339 [ATCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGAC] HWI-EAS406:6:37:1487:1516#0 1 1 76 52264 52339 [TCAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACA] HWI-EAS406:7:8:666:1502#0 1 1 76 52265 52340 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:25:334:146#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:38:1366:1989#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:52:746:552#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:53:1240:1041#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:68:1437:1987#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:85:323:1728#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:5:93:1121:225#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:11:1389:1554#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:49:1419:608#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:6:71:1174:1073#0 1 1 76 52266 52341 [CAGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAG] HWI-EAS406:7:75:951:1345#0 1 1 76 52266 52341 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:15:947:1923#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:5:17:1464:1199#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:13:943:1893#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:71:346:1276#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:93:161:1371#0 1 1 76 52267 52342 [AGGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGG] HWI-EAS406:7:94:1100:882#0 1 1 76 52267 52342 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:5:86:281:653#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:19:674:714#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:6:48:1353:1724#0 1 1 76 52268 52343 [GGACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGT] HWI-EAS406:7:29:1542:1037#0 1 1 76 52268 52343 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:5:86:810:1629#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:34:1378:1501#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:6:64:183:1239#0 1 1 76 52269 52344 [GACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTT] HWI-EAS406:7:22:450:1492#0 1 1 76 52269 52344 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:5:14:1646:1734#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:6:83:1746:217#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:49:522:970#0 1 1 76 52270 52345 [ACTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTC] HWI-EAS406:7:84:887:295#0 1 1 76 52270 52345 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:5:49:1017:1244#0 1 1 76 52271 52346 [CTCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCG] HWI-EAS406:7:80:842:1267#0 1 1 76 52271 52346 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:23:629:1683#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:60:1493:1305#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:6:68:630:343#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:28:1402:643#0 1 1 76 52272 52347 [TCCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGA] HWI-EAS406:7:68:300:1753#0 1 1 76 52272 52347 [CCTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGAC] HWI-EAS406:7:77:1303:1334#0 1 1 76 52273 52348 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:24:1412:1968#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:5:87:579:655#0 1 1 76 52274 52349 [CTCAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACA] HWI-EAS406:7:59:1571:1671#0 1 1 76 52274 52349 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:27:888:654#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:5:44:1426:967#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:6:9:915:1768#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:43:1353:349#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:57:923:841#0 1 1 76 52276 52351 [CAACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGC] HWI-EAS406:7:80:1425:1717#0 1 1 76 52276 52351 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:4:195:1410#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:10:640:255#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:6:53:346:769#0 1 1 76 52277 52352 [AACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCT] HWI-EAS406:7:85:1068:1802#0 1 1 76 52277 52352 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:5:7:123:677#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:6:91:376:1230#0 1 1 76 52278 52353 [ACGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTA] HWI-EAS406:7:61:1752:1817#0 1 1 76 52278 52353 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:52:527:1818#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:5:98:806:313#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:21:1167:455#0 1 1 76 52279 52354 [CGTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTAC] HWI-EAS406:7:50:1317:1946#0 1 1 76 52279 52354 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:6:96:484:1269#0 1 1 76 52280 52355 [GTGATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACT] HWI-EAS406:7:52:1223:1795#0 1 1 76 52280 52355 [GATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGT] HWI-EAS406:6:62:601:1096#0 1 1 76 52282 52357 [ATCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTG] HWI-EAS406:7:40:673:1073#0 1 1 76 52283 52358 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:28:714:1051#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:5:46:1063:1975#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:6:36:660:431#0 1 1 76 52284 52359 [TCGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGG] HWI-EAS406:7:6:1104:1516#0 1 1 76 52284 52359 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:3:1687:1148#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:5:92:222:1451#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:54:1624:322#0 1 1 76 52285 52360 [CGAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG] HWI-EAS406:6:77:293:1567#0 1 1 76 52285 52360 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:5:15:1334:1117#0 1 1 76 52286 52361 [GAGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGT] HWI-EAS406:6:95:1198:1326#0 1 1 76 52286 52361 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:13:1280:1125#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:30:1591:708#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:5:37:976:1723#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:24:1169:1420#0 1 1 76 52287 52362 [AGAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTT] HWI-EAS406:6:95:251:372#0 1 1 76 52287 52362 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:5:55:1530:1535#0 1 1 76 52288 52363 [GAACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTG] HWI-EAS406:6:59:506:348#0 1 1 76 52288 52363 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:5:79:394:1921#0 1 1 76 52290 52365 [ACAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTC] HWI-EAS406:6:36:739:479#0 1 1 76 52290 52365 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:5:59:301:1567#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:6:1691:1668#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:6:89:544:1361#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:36:845:1416#0 1 1 76 52292 52367 [AACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAA] HWI-EAS406:7:78:917:801#0 1 1 76 52292 52367 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:5:78:1278:1860#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:6:30:59:1461#0 1 1 76 52293 52368 [ACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAA] HWI-EAS406:7:19:811:1021#0 1 1 76 52293 52368 [CAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAA] HWI-EAS406:7:38:1739:351#0 1 1 76 52294 52369 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:39:1693:773#0 1 1 76 52296 52371 [AGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAAC] HWI-EAS406:5:72:1492:975#0 1 1 76 52296 52371 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:9:513:554#0 1 1 76 52297 52372 [GTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACC] HWI-EAS406:5:80:1083:780#0 1 1 76 52297 52372 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:5:1:896:595#0 1 1 76 52298 52373 [TATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCA] HWI-EAS406:7:67:565:904#0 1 1 76 52298 52373 [ATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAA] HWI-EAS406:5:74:1730:1358#0 1 1 76 52299 52374 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:24:498:151#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:33:1187:650#0 1 1 76 52300 52375 [TCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAAT] HWI-EAS406:7:89:327:810#0 1 1 76 52300 52375 [CATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATG] HWI-EAS406:7:11:955:1706#0 1 1 76 52301 52376 [ATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGG] HWI-EAS406:5:1:1774:1615#0 1 1 76 52302 52377 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:79:357:290#0 1 1 76 52303 52378 [TGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGT] HWI-EAS406:6:86:1242:822#0 1 1 76 52303 52378 [GGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTG] HWI-EAS406:5:5:1401:1725#0 1 1 76 52304 52379 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:70:1431:96#0 1 1 76 52305 52380 [GCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGT] HWI-EAS406:6:83:1673:880#0 1 1 76 52305 52380 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:54:954:1475#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:5:79:159:1997#0 1 1 76 52306 52381 [CTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTG] HWI-EAS406:7:91:139:1980#0 1 1 76 52306 52381 [TTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGT] HWI-EAS406:7:84:983:1321#0 1 1 76 52307 52382 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:5:79:1745:1147#0 1 1 76 52308 52383 [TGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTC] HWI-EAS406:6:22:1189:680#0 1 1 76 52308 52383 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:21:547:416#0 1 1 76 52309 52384 [GGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCC] HWI-EAS406:5:92:1137:1402#0 1 1 76 52309 52384 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:6:785:515#0 1 1 76 52310 52385 [GCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCG] HWI-EAS406:7:72:1490:50#0 1 1 76 52310 52385 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:43:1006:992#0 1 1 76 52311 52386 [CTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGA] HWI-EAS406:7:56:1090:611#0 1 1 76 52311 52386 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:24:233:961#0 1 1 76 52312 52387 [TCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAA] HWI-EAS406:6:95:972:973#0 1 1 76 52312 52387 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:5:17:303:965#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:14:1260:460#0 1 1 76 52313 52388 [CTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAG] HWI-EAS406:7:30:551:90#0 1 1 76 52313 52388 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:5:37:1278:1788#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:33:930:1428#0 1 1 76 52314 52389 [TAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGA] HWI-EAS406:6:62:1218:840#0 1 1 76 52314 52389 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:64:270:680#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:5:75:1545:33#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:11:1735:332#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:54:496:1518#0 1 1 76 52315 52390 [AGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGAT] HWI-EAS406:7:56:778:387#0 1 1 76 52315 52390 [AGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGC] HWI-EAS406:6:94:1246:1663#0 1 1 76 52317 52392 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:6:42:1509:946#0 1 1 76 52319 52394 [GATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCT] HWI-EAS406:7:50:929:653#0 1 1 76 52319 52394 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:6:61:1298:1596#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:52:717:1780#0 1 1 76 52320 52395 [ATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTT] HWI-EAS406:7:76:1646:1467#0 1 1 76 52320 52395 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:6:66:392:1831#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:76:668:942#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:79:214:1087#0 1 1 76 52322 52397 [CCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAA] HWI-EAS406:7:99:685:562#0 1 1 76 52322 52397 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:78:1623:1950#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:5:85:1401:153#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:6:37:1677:1094#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:53:617:1394#0 1 1 76 52323 52398 [CATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAA] HWI-EAS406:7:60:92:692#0 1 1 76 52323 52398 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:66:1756:1393#0 1 1 76 52324 52399 [ATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAG] HWI-EAS406:6:99:386:1047#0 1 1 76 52324 52399 [TTGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCT] HWI-EAS406:7:65:383:1927#0 1 1 76 52326 52401 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:4:654:477#0 1 1 76 52327 52402 [TGATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTC] HWI-EAS406:5:71:185:1268#0 1 1 76 52327 52402 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:5:9:857:1601#0 1 1 76 52328 52403 [GATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCA] HWI-EAS406:6:87:352:1381#0 1 1 76 52328 52403 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:62:1384:1693#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:6:99:1383:725#0 1 1 76 52329 52404 [ATCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAA] HWI-EAS406:7:15:993:1349#0 1 1 76 52329 52404 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:5:86:1430:15#0 1 1 76 52330 52405 [TCACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAG] HWI-EAS406:6:68:792:418#0 1 1 76 52330 52405 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:14:1447:825#0 1 1 76 52331 52406 [CACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGC] HWI-EAS406:5:15:1080:1881#0 1 1 76 52331 52406 [ACTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCT] HWI-EAS406:5:15:1215:481#0 1 1 76 52332 52407 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:5:19:722:1722#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:6:18:963:285#0 1 1 76 52333 52408 [CTTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTA] HWI-EAS406:7:49:628:1029#0 1 1 76 52333 52408 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:35:1298:1838#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:5:37:496:730#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:17:1341:371#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:46:1262:1804#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:6:48:776:786#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:26:623:605#0 1 1 76 52334 52409 [TTGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTAT] HWI-EAS406:7:82:1533:327#0 1 1 76 52334 52409 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:5:71:648:1749#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:6:1574:1798#0 1 1 76 52335 52410 [TGGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATT] HWI-EAS406:7:98:1452:1598#0 1 1 76 52335 52410 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:20:291:1335#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:26:813:679#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:76:1715:954#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:82:1081:1905#0 1 1 76 52336 52411 [GGACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTC] HWI-EAS406:7:83:672:1351#0 1 1 76 52336 52411 [GACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCC] HWI-EAS406:6:26:79:1984#0 1 1 76 52337 52412 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:8:1766:1437#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:5:48:517:851#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:38:1169:1242#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:6:48:713:1735#0 1 1 76 52338 52413 [ACAGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCC] HWI-EAS406:7:73:1464:1506#0 1 1 76 52338 52413 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:5:6:196:217#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:12:911:698#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:62:1681:703#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:6:82:724:1281#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:54:940:1383#0 1 1 76 52340 52415 [AGGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTT] HWI-EAS406:7:76:1666:962#0 1 1 76 52340 52415 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:5:65:411:1394#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:6:35:519:177#0 1 1 76 52341 52416 [GGTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTT] HWI-EAS406:7:83:606:14#0 1 1 76 52341 52416 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:6:37:1476:639#0 1 1 76 52342 52417 [GTTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTC] HWI-EAS406:7:65:672:108#0 1 1 76 52342 52417 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:45:282:1760#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:5:80:1605:805#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:38:196:252#0 1 1 76 52343 52418 [TTCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCT] HWI-EAS406:7:55:1424:1623#0 1 1 76 52343 52418 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:5:4:820:1980#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:33:617:236#0 1 1 76 52344 52419 [TCGACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTC] HWI-EAS406:7:76:1431:640#0 1 1 76 52344 52419 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:63:689:473#0 1 1 76 52346 52421 [GACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTT] HWI-EAS406:5:82:1672:1506#0 1 1 76 52346 52421 [ACAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTT] HWI-EAS406:7:87:1378:1986#0 1 1 76 52347 52422 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:6:18:104:1732#0 1 1 76 52348 52423 [CAGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTG] HWI-EAS406:7:85:742:826#0 1 1 76 52348 52423 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:78:277:975#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:86:1514:1063#0 1 1 76 52349 52424 [AGCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGG] HWI-EAS406:7:98:1616:938#0 1 1 76 52349 52424 [GCTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGG] HWI-EAS406:5:53:372:990#0 1 1 76 52350 52425 [CTACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGG] HWI-EAS406:7:88:322:659#0 1 1 76 52351 52426 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:80:77:1738#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:6:99:1630:380#0 1 1 76 52352 52427 [TACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGG] HWI-EAS406:7:28:15:1735#0 1 1 76 52352 52427 [ACTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGA] HWI-EAS406:7:2:976:627#0 1 1 76 52353 52428 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:5:60:513:1239#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:6:77:603:1284#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:28:570:1220#0 1 1 76 52354 52429 [CTGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGAT] HWI-EAS406:7:52:511:1590#0 1 1 76 52354 52429 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:2:1424:581#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:30:673:873#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:70:1713:1317#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:6:83:833:377#0 1 1 76 52355 52430 [TGTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA] HWI-EAS406:7:8:368:1271#0 1 1 76 52355 52430 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:5:49:452:1791#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:6:66:1354:1650#0 1 1 76 52356 52431 [GTGGGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAA] HWI-EAS406:7:67:1470:1467#0 1 1 76 52356 52431 [GGTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGC] HWI-EAS406:7:57:1013:941#0 1 1 76 52359 52434 [GTTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCA] HWI-EAS406:6:22:1141:882#0 1 1 76 52360 52435 [TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCAC] HWI-EAS406:7:86:123:1529#0 1 1 76 52361 52436 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:5:60:1506:520#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:6:53:1668:1315#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:42:853:1654#0 1 1 76 52362 52437 [TGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACG] HWI-EAS406:7:45:987:603#0 1 1 76 52362 52437 [GTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGT] HWI-EAS406:7:39:1343:1585#0 1 1 76 52363 52438 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:5:63:9:408#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:23:683:1669#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:33:330:1673#0 1 1 76 52365 52440 [CAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCA] HWI-EAS406:6:56:1406:957#0 1 1 76 52365 52440 [AAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTG] HWI-EAS406:7:16:1679:536#0 1 1 76 52368 52443 [AACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGG] HWI-EAS406:5:90:999:2029#0 1 1 76 52369 52444 [ACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGG] HWI-EAS406:7:11:1490:1402#0 1 1 76 52370 52445 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:5:38:1343:184#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:6:21:1412:1644#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:2:1141:279#0 1 1 76 52371 52446 [CCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGA] HWI-EAS406:7:93:349:1860#0 1 1 76 52371 52446 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:5:83:994:1882#0 1 1 76 52372 52447 [CAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAG] HWI-EAS406:6:77:942:1146#0 1 1 76 52372 52447 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:5:82:1760:1734#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:32:555:593#0 1 1 76 52373 52448 [AATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGA] HWI-EAS406:6:99:160:1579#0 1 1 76 52373 52448 [ATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAA] HWI-EAS406:5:6:1045:336#0 1 1 76 52374 52449 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:5:40:1182:762#0 1 1 76 52375 52450 [TGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAG] HWI-EAS406:7:45:1790:2027#0 1 1 76 52375 52450 [TGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCT] HWI-EAS406:6:30:1244:1033#0 1 1 76 52378 52453 [TGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCT] HWI-EAS406:6:25:672:873#0 1 1 76 52380 52455 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:6:15:850:569#0 1 1 76 52381 52456 [GTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTA] HWI-EAS406:7:82:1566:1600#0 1 1 76 52381 52456 [TCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTAC] HWI-EAS406:5:96:993:668#0 1 1 76 52382 52457 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:5:1335:234#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:8:634:1148#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:48:1364:606#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:5:83:286:788#0 1 1 76 52383 52458 [CCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACC] HWI-EAS406:6:46:1265:853#0 1 1 76 52383 52458 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:6:97:1422:276#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:30:1373:1336#0 1 1 76 52384 52459 [CGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCC] HWI-EAS406:7:91:1638:634#0 1 1 76 52384 52459 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:6:30:1107:1555#0 1 1 76 52385 52460 [GAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCA] HWI-EAS406:7:62:403:725#0 1 1 76 52385 52460 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:6:97:210:575#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:8:768:1918#0 1 1 76 52389 52464 [ATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGA] HWI-EAS406:7:18:744:577#0 1 1 76 52389 52464 [TGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGAC] HWI-EAS406:6:12:1033:288#0 1 1 76 52390 52465 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:44:1286:914#0 1 1 76 52391 52466 [GCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACT] HWI-EAS406:6:99:75:238#0 1 1 76 52391 52466 [CTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCC] HWI-EAS406:7:25:1534:1288#0 1 1 76 52393 52468 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:5:92:1021:315#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:6:22:939:1557#0 1 1 76 52395 52470 [TAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCAT] HWI-EAS406:7:42:1700:1551#0 1 1 76 52395 52470 [AAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATC] HWI-EAS406:5:99:281:1040#0 1 1 76 52396 52471 [TCAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTAC] HWI-EAS406:5:22:934:1120#0 1 1 76 52401 52476 [CAAGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACT] HWI-EAS406:6:72:438:93#0 1 1 76 52402 52477 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:5:44:953:153#0 1 1 76 52404 52479 [AGCTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTG] HWI-EAS406:7:92:1274:1315#0 1 1 76 52404 52479 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:13:34:1242#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:5:85:208:1122#0 1 1 76 52406 52481 [CTATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGG] HWI-EAS406:7:43:587:413#0 1 1 76 52406 52481 [TATTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGA] HWI-EAS406:6:47:845:736#0 1 1 76 52407 52482 [TTCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATG] HWI-EAS406:7:90:897:1890#0 1 1 76 52409 52484 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:5:50:917:1976#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:6:46:1501:1311#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:35:1049:1828#0 1 1 76 52410 52485 [TCCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGA] HWI-EAS406:7:91:943:1527#0 1 1 76 52410 52485 [CCCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGAC] HWI-EAS406:5:79:515:1833#0 1 1 76 52411 52486 [CCTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACT] HWI-EAS406:6:53:1426:1923#0 1 1 76 52412 52487 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:4:316:253#0 1 1 76 52413 52488 [CTTTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTG] HWI-EAS406:5:26:157:281#0 1 1 76 52413 52488 [TTCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCA] HWI-EAS406:5:69:281:1963#0 1 1 76 52415 52490 [TCTCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAA] HWI-EAS406:5:26:250:604#0 1 1 76 52416 52491 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:33:965:904#0 1 1 76 52418 52493 [TCTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGA] HWI-EAS406:5:34:525:990#0 1 1 76 52418 52493 [CTTTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAA] HWI-EAS406:7:88:734:166#0 1 1 76 52419 52494 [TTGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAG] HWI-EAS406:7:36:631:1873#0 1 1 76 52421 52496 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:12:1159:384#0 1 1 76 52422 52497 [TGGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGC] HWI-EAS406:7:83:1161:1426#0 1 1 76 52422 52497 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:6:90:771:1361#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:41:910:1083#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:70:99:1689#0 1 1 76 52423 52498 [GGGGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCA] HWI-EAS406:7:77:1174:839#0 1 1 76 52423 52498 [GGGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT] HWI-EAS406:7:63:1480:724#0 1 1 76 52425 52500 [GGATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTC] HWI-EAS406:7:77:1453:1511#0 1 1 76 52426 52501 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:6:26:1732:1025#0 1 1 76 52427 52502 [GATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCT] HWI-EAS406:7:97:947:1880#0 1 1 76 52427 52502 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:6:35:171:1900#0 1 1 76 52428 52503 [ATAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTT] HWI-EAS406:7:88:334:545#0 1 1 76 52428 52503 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:5:66:1234:1609#0 1 1 76 52429 52504 [TAAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTG] HWI-EAS406:7:92:1680:921#0 1 1 76 52429 52504 [AAGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGG] HWI-EAS406:7:52:1570:713#0 1 1 76 52430 52505 [AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGA] HWI-EAS406:5:32:715:488#0 1 1 76 52431 52506 [GGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAG] HWI-EAS406:5:9:811:1156#0 1 1 76 52432 52507 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:45:1657:1532#0 1 1 76 52435 52510 [ACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAG] HWI-EAS406:6:98:1786:481#0 1 1 76 52435 52510 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:5:68:760:968#0 1 1 76 52436 52511 [CGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGT] HWI-EAS406:6:68:1440:1647#0 1 1 76 52436 52511 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:6:46:903:1877#0 1 1 76 52437 52512 [GTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTT] HWI-EAS406:7:19:367:1436#0 1 1 76 52437 52512 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:5:66:28:1446#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:6:34:464:783#0 1 1 76 52438 52513 [TCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTC] HWI-EAS406:7:15:604:1090#0 1 1 76 52438 52513 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:13:348:1033#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:6:87:1295:1803#0 1 1 76 52439 52514 [CAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCT] HWI-EAS406:7:64:1047:978#0 1 1 76 52439 52514 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:5:16:182:749#0 1 1 76 52440 52515 [AGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTT] HWI-EAS406:6:24:199:363#0 1 1 76 52440 52515 [GTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTC] HWI-EAS406:6:16:164:1853#0 1 1 76 52441 52516 [TGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCT] HWI-EAS406:5:43:513:1459#0 1 1 76 52442 52517 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:6:21:1418:1301#0 1 1 76 52443 52518 [GGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTC] HWI-EAS406:7:70:905:646#0 1 1 76 52443 52518 [GGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCT] HWI-EAS406:6:35:1341:1497#0 1 1 76 52444 52519 [GAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTA] HWI-EAS406:6:28:1743:1594#0 1 1 76 52445 52520 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:5:6:112:390#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:6:24:879:466#0 1 1 76 52446 52521 [AGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTAC] HWI-EAS406:7:73:1724:1685#0 1 1 76 52446 52521 [AGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTC] HWI-EAS406:7:94:1324:697#0 1 1 76 52449 52524 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:5:11:1687:764#0 1 1 76 52450 52525 [GTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCA] HWI-EAS406:7:38:116:123#0 1 1 76 52450 52525 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:40:1410:892#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:5:76:340:1910#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:36:364:1516#0 1 1 76 52451 52526 [TCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAA] HWI-EAS406:6:70:1047:873#0 1 1 76 52451 52526 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:74:787:283#0 1 1 76 52452 52527 [CTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAG] HWI-EAS406:7:89:834:1558#0 1 1 76 52452 52527 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:49:1334:1952#0 1 1 76 52453 52528 [TCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGA] HWI-EAS406:6:65:263:1491#0 1 1 76 52453 52528 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:5:78:957:1758#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:30:646:977#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:6:50:1090:503#0 1 1 76 52454 52529 [CTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAA] HWI-EAS406:7:43:158:1802#0 1 1 76 52454 52529 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:13:446:1928#0 1 1 76 52456 52531 [ACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACT] HWI-EAS406:5:83:1509:904#0 1 1 76 52456 52531 [CCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTG] HWI-EAS406:6:18:602:671#0 1 1 76 52457 52532 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:5:69:1041:132#0 1 1 76 52458 52533 [CCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGC] HWI-EAS406:6:86:1678:830#0 1 1 76 52458 52533 [CAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCT] HWI-EAS406:6:76:425:734#0 1 1 76 52459 52534 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1369:1448#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:5:91:1370:1450#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:15:386:1653#0 1 1 76 52460 52535 [AGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTA] HWI-EAS406:6:45:1743:1797#0 1 1 76 52460 52535 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:5:63:157:339#0 1 1 76 52461 52536 [GTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAA] HWI-EAS406:6:99:151:1752#0 1 1 76 52461 52536 [TGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAG] HWI-EAS406:5:21:74:623#0 1 1 76 52462 52537 [GACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGC] HWI-EAS406:7:3:1765:1463#0 1 1 76 52463 52538 [ACTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCT] HWI-EAS406:5:100:867:1403#0 1 1 76 52464 52539 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:5:21:1694:986#0 1 1 76 52465 52540 [CTCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTG] HWI-EAS406:6:23:243:1026#0 1 1 76 52465 52540 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:6:73:769:554#0 1 1 76 52466 52541 [TCCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGA] HWI-EAS406:7:33:333:934#0 1 1 76 52466 52541 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:5:34:80:1647#0 1 1 76 52467 52542 [CCATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAG] HWI-EAS406:7:18:104:733#0 1 1 76 52467 52542 [CATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGA] HWI-EAS406:7:71:1068:1574#0 1 1 76 52468 52543 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:50:1106:1240#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:5:58:316:1761#0 1 1 76 52469 52544 [ATCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAA] HWI-EAS406:7:59:96:812#0 1 1 76 52469 52544 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:47:1287:1406#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:5:68:273:853#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:6:71:678:999#0 1 1 76 52470 52545 [TCACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAA] HWI-EAS406:7:66:511:931#0 1 1 76 52470 52545 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:6:27:1712:1795#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:43:690:304#0 1 1 76 52471 52546 [CACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAAC] HWI-EAS406:7:75:43:1636#0 1 1 76 52471 52546 [ACTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACG] HWI-EAS406:7:31:1226:1513#0 1 1 76 52472 52547 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:5:67:1617:965#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:56:1266:96#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:6:74:1656:109#0 1 1 76 52473 52548 [CTACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGA] HWI-EAS406:7:2:273:624#0 1 1 76 52473 52548 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:2:443:921#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:5:66:1335:1233#0 1 1 76 52474 52549 [TACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAG] HWI-EAS406:6:94:1634:1213#0 1 1 76 52474 52549 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:5:24:1147:1318#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:6:99:931:988#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:42:443:715#0 1 1 76 52475 52550 [ACTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGA] HWI-EAS406:7:82:1415:1808#0 1 1 76 52475 52550 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:18:662:1862#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:26:691:1840#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:60:428:951#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:5:83:245:1659#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:6:32:791:1173#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:51:376:736#0 1 1 76 52476 52551 [CTTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGAT] HWI-EAS406:7:70:543:785#0 1 1 76 52476 52551 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:14:1386:1596#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:51:706:494#0 1 1 76 52477 52552 [TTGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATT] HWI-EAS406:7:81:325:1398#0 1 1 76 52477 52552 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:5:34:122:1746#0 1 1 76 52478 52553 [TGGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTT] HWI-EAS406:6:95:1264:1695#0 1 1 76 52478 52553 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:10:844:278#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:6:73:274:1502#0 1 1 76 52479 52554 [GGGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTC] HWI-EAS406:7:43:327:1656#0 1 1 76 52479 52554 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:72:940:210#0 1 1 76 52480 52555 [GGATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCC] HWI-EAS406:5:74:282:1963#0 1 1 76 52480 52555 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:41:1127:1992#0 1 1 76 52481 52556 [GATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCA] HWI-EAS406:7:74:253:671#0 1 1 76 52481 52556 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:6:74:1612:1102#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:15:103:280#0 1 1 76 52482 52557 [ATGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAG] HWI-EAS406:7:28:942:1576#0 1 1 76 52482 52557 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:30:1082:1249#0 1 1 76 52483 52558 [TGACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGC] HWI-EAS406:6:90:436:1780#0 1 1 76 52483 52558 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:10:964:478#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:5:21:804:471#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:6:37:1646:747#0 1 1 76 52484 52559 [GACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCT] HWI-EAS406:7:12:1579:1295#0 1 1 76 52484 52559 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:5:70:1191:63#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:32:1484:542#0 1 1 76 52485 52560 [ACTGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTT] HWI-EAS406:6:93:690:1159#0 1 1 76 52485 52560 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:88:794:359#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:5:95:1262:1246#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:6:11:608:389#0 1 1 76 52487 52562 [TGCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTC] HWI-EAS406:7:7:665:1469#0 1 1 76 52487 52562 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:6:51:1748:924#0 1 1 76 52488 52563 [GCAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCA] HWI-EAS406:7:38:312:1700#0 1 1 76 52488 52563 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:5:66:785:1132#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:6:48:1563:1761#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:31:879:269#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:68:1429:1697#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:70:1178:1056#0 1 1 76 52489 52564 [CAAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAA] HWI-EAS406:7:98:194:426#0 1 1 76 52489 52564 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:18:834:2002#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:5:96:777:523#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:6:19:1451:79#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:9:796:694#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:45:1281:1591#0 1 1 76 52490 52565 [AAGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAAC] HWI-EAS406:7:72:162:2022#0 1 1 76 52490 52565 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:5:8:524:330#0 1 1 76 52491 52566 [AGAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACA] HWI-EAS406:7:72:115:1689#0 1 1 76 52491 52566 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:6:83:1575:1953#0 1 1 76 52492 52567 [GAAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAG] HWI-EAS406:7:16:697:657#0 1 1 76 52492 52567 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:5:57:1336:1073#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:878:959#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:6:78:1740:1330#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:32:1710:799#0 1 1 76 52493 52568 [AAAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGA] HWI-EAS406:7:44:910:1817#0 1 1 76 52493 52568 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:5:13:1589:1763#0 1 1 76 52494 52569 [AAGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAA] HWI-EAS406:7:62:164:886#0 1 1 76 52494 52569 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:28:1334:1780#0 1 1 76 52495 52570 [AGCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG] HWI-EAS406:6:57:682:1761#0 1 1 76 52495 52570 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:6:91:1101:1030#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:64:1205:794#0 1 1 76 52496 52571 [GCATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGA] HWI-EAS406:7:78:1109:1#0 1 1 76 52496 52571 [CATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAA] HWI-EAS406:6:49:949:577#0 1 1 76 52497 52572 [ATTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAAC] HWI-EAS406:5:63:1417:785#0 1 1 76 52498 52573 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:51:1518:1187#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:70:521:909#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:73:559:537#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:5:98:1445:897#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:8:1630:621#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:18:1287:928#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:6:35:659:1510#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:76:1054:1173#0 1 1 76 52499 52574 [TTCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACT] HWI-EAS406:7:91:153:1178#0 1 1 76 52499 52574 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:29:1504:889#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:47:876:1309#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:6:51:1240:1263#0 1 1 76 52500 52575 [TCTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTT] HWI-EAS406:7:3:329:1926#0 1 1 76 52500 52575 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:5:9:665:754#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:6:79:1515:1769#0 1 1 76 52501 52576 [CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTG] HWI-EAS406:7:5:321:1398#0 1 1 76 52501 52576 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:10:448:847#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:5:84:939:302#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:6:4:605:946#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:10:1155:1736#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:35:1593:1354#0 1 1 76 52502 52577 [TTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGG] HWI-EAS406:7:90:1553:1930#0 1 1 76 52502 52577 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:5:97:42:1409#0 1 1 76 52503 52578 [TGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGA] HWI-EAS406:6:72:374:36#0 1 1 76 52503 52578 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:1:363:555#0 1 1 76 52504 52579 [GGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAA] HWI-EAS406:6:67:457:2017#0 1 1 76 52504 52579 [GAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAG] HWI-EAS406:7:96:993:1666#0 1 1 76 52505 52580 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:22:214:325#0 1 1 76 52506 52581 [AGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGG] HWI-EAS406:6:82:789:903#0 1 1 76 52506 52581 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:5:74:1338:1894#0 1 1 76 52507 52582 [GAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGC] HWI-EAS406:7:30:366:836#0 1 1 76 52507 52582 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:8:749:1123#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:6:53:88:1848#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:3:1646:1866#0 1 1 76 52508 52583 [AAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCT] HWI-EAS406:7:29:354:1197#0 1 1 76 52508 52583 [GTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTC] HWI-EAS406:6:15:1327:1024#0 1 1 76 52510 52585 [TTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCA] HWI-EAS406:5:98:1669:1163#0 1 1 76 52511 52586 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:13:588:1428#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:81:305:252#0 1 1 76 52512 52587 [TCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAG] HWI-EAS406:7:94:711:1778#0 1 1 76 52512 52587 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:5:72:446:1078#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:6:33:92:1092#0 1 1 76 52513 52588 [CTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGT] HWI-EAS406:7:66:493:314#0 1 1 76 52513 52588 [TTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTG] HWI-EAS406:7:8:360:1468#0 1 1 76 52514 52589 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:5:55:629:1181#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:10:957:369#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:63:1404:1267#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:67:377:1457#0 1 1 76 52515 52590 [TCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGA] HWI-EAS406:7:93:77:1511#0 1 1 76 52515 52590 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:8:919:1857#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:45:1692:468#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:5:72:1250:436#0 1 1 76 52516 52591 [CTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAA] HWI-EAS406:7:22:875:178#0 1 1 76 52516 52591 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:5:36:1193:1569#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:6:59:1446:981#0 1 1 76 52517 52592 [TCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAG] HWI-EAS406:7:33:864:49#0 1 1 76 52517 52592 [CTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGC] HWI-EAS406:6:75:1268:559#0 1 1 76 52518 52593 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:13:887:1017#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:5:77:991:1540#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:33:832:140#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:6:77:1261:1245#0 1 1 76 52519 52594 [TACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCC] HWI-EAS406:7:35:607:1366#0 1 1 76 52519 52594 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:5:47:873:1758#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:23:1537:1227#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1564:1847#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:6:66:1731:835#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:61:1436:1032#0 1 1 76 52520 52595 [ACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCT] HWI-EAS406:7:79:913:1653#0 1 1 76 52520 52595 [CTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTG] HWI-EAS406:6:38:59:951#0 1 1 76 52521 52596 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:25:1507:1261#0 1 1 76 52522 52597 [TTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGG] HWI-EAS406:7:29:1214:1944#0 1 1 76 52522 52597 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:5:67:86:578#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:6:42:1774:1442#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:1:189:1556#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:10:1412:914#0 1 1 76 52524 52599 [CAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGA] HWI-EAS406:7:17:97:955#0 1 1 76 52524 52599 [AAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAG] HWI-EAS406:5:69:799:1623#0 1 1 76 52525 52600 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:35:1168:776#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:76:318:325#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:5:92:295:1460#0 1 1 76 52526 52601 [AGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGA] HWI-EAS406:6:26:712:900#0 1 1 76 52526 52601 [GAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAG] HWI-EAS406:6:89:257:1369#0 1 1 76 52527 52602 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:12:1206:1252#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:5:95:1686:1754#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:6:13:1570:968#0 1 1 76 52528 52603 [AACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGA] HWI-EAS406:7:36:769:1869#0 1 1 76 52528 52603 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:53:432:995#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:934:508#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:6:80:1447:59#0 1 1 76 52529 52604 [ACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGAT] HWI-EAS406:7:92:513:1466#0 1 1 76 52529 52604 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:6:27:1121:1352#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:28:1475:1019#0 1 1 76 52530 52605 [CTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATT] HWI-EAS406:7:86:1641:7#0 1 1 76 52530 52605 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:6:25:1093:266#0 1 1 76 52531 52606 [TGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTC] HWI-EAS406:7:86:1284:1345#0 1 1 76 52531 52606 [GCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCA] HWI-EAS406:6:6:345:1154#0 1 1 76 52532 52607 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:62:493:202#0 1 1 76 52533 52608 [CTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAA] HWI-EAS406:7:88:725:714#0 1 1 76 52533 52608 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:12:1673:1480#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:20:46:301#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:6:42:1276:1476#0 1 1 76 52534 52609 [TAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAG] HWI-EAS406:7:73:376:1496#0 1 1 76 52534 52609 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:8:1375:1270#0 1 1 76 52535 52610 [AAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGG] HWI-EAS406:7:71:410:514#0 1 1 76 52535 52610 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:24:1366:388#0 1 1 76 52536 52611 [AGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGG] HWI-EAS406:5:33:223:1151#0 1 1 76 52536 52611 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:59:1075:1577#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:6:72:1351:1858#0 1 1 76 52537 52612 [GCTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGC] HWI-EAS406:7:24:1725:638#0 1 1 76 52537 52612 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:6:79:313:934#0 1 1 76 52538 52613 [CTGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCT] HWI-EAS406:7:87:1208:82#0 1 1 76 52538 52613 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:12:1396:1654#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:5:26:729:915#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:6:65:1510:1944#0 1 1 76 52539 52614 [TGAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTA] HWI-EAS406:7:71:1744:1427#0 1 1 76 52539 52614 [GAGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTAC] HWI-EAS406:5:13:538:853#0 1 1 76 52540 52615 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:5:25:1344:1201#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:23:1678:1177#0 1 1 76 52541 52616 [AGAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACC] HWI-EAS406:7:71:97:1960#0 1 1 76 52541 52616 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:5:55:574:1991#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:6:79:1392:1059#0 1 1 76 52542 52617 [GAAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCA] HWI-EAS406:7:29:1737:689#0 1 1 76 52542 52617 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:35:1523:1128#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:6:68:848:1372#0 1 1 76 52543 52618 [AAACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAA] HWI-EAS406:7:82:274:1527#0 1 1 76 52543 52618 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:8:1602:1902#0 1 1 76 52544 52619 [AACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAG] HWI-EAS406:5:93:165:1467#0 1 1 76 52544 52619 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:26:1215:168#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:5:45:1150:1600#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:6:96:169:645#0 1 1 76 52545 52620 [ACGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGC] HWI-EAS406:7:6:944:1625#0 1 1 76 52545 52620 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:5:76:1228:1139#0 1 1 76 52546 52621 [CGAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCT] HWI-EAS406:7:68:484:916#0 1 1 76 52546 52621 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:5:59:565:1459#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:6:1459:340#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:77:1461:267#0 1 1 76 52547 52622 [GAGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTC] HWI-EAS406:7:93:108:1063#0 1 1 76 52547 52622 [AGATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCA] HWI-EAS406:5:95:924:1921#0 1 1 76 52548 52623 [GATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAA] HWI-EAS406:7:13:1035:1167#0 1 1 76 52549 52624 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:2:478:1202#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:80:1169:1125#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:5:90:1546:929#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:6:1:1764:573#0 1 1 76 52550 52625 [ATTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAAT] HWI-EAS406:7:63:671:1580#0 1 1 76 52550 52625 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:63:1087:724#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:5:71:1490:1081#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:6:364:512#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:6:98:1579:1040#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:25:655:1303#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:49:1462:290#0 1 1 76 52551 52626 [TTTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATG] HWI-EAS406:7:61:491:22#0 1 1 76 52551 52626 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:56:87:1755#0 1 1 76 52552 52627 [TTCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGC] HWI-EAS406:6:57:91:1117#0 1 1 76 52552 52627 [TCCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCC] HWI-EAS406:6:63:377:361#0 1 1 76 52553 52628 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:41:1439:1817#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:76:350:1040#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:5:80:1498:578#0 1 1 76 52554 52629 [CCAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCC] HWI-EAS406:7:98:180:949#0 1 1 76 52554 52629 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:5:51:1261:274#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:6:67:361:133#0 1 1 76 52555 52630 [CAGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCA] HWI-EAS406:7:61:56:966#0 1 1 76 52555 52630 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:5:1159:616#0 1 1 76 52556 52631 [AGCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCAC] HWI-EAS406:7:66:83:1138#0 1 1 76 52556 52631 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:42:1311:1327#0 1 1 76 52557 52632 [GCTTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACC] HWI-EAS406:5:59:832:1813#0 1 1 76 52557 52632 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:40:532:318#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:6:84:807:560#0 1 1 76 52559 52634 [TTTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCC] HWI-EAS406:7:61:992:1593#0 1 1 76 52559 52634 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:31:970:383#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:42:1351:1536#0 1 1 76 52560 52635 [TTCAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCA] HWI-EAS406:7:48:428:1071#0 1 1 76 52560 52635 [CAACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATG] HWI-EAS406:6:48:1577:1480#0 1 1 76 52562 52637 [ACAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGC] HWI-EAS406:7:15:1612:1112#0 1 1 76 52564 52639 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:49:1261:547#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:73:1762:1319#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:79:1561:507#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:6:98:1341:624#0 1 1 76 52565 52640 [CAGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT] HWI-EAS406:7:53:1535:371#0 1 1 76 52565 52640 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:5:54:400:458#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:6:67:510:1693#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:26:1299:1893#0 1 1 76 52566 52641 [AGAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTT] HWI-EAS406:7:68:216:206#0 1 1 76 52566 52641 [GAAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTT] HWI-EAS406:5:59:34:1592#0 1 1 76 52567 52642 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:5:16:972:45#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:11:371:1927#0 1 1 76 52568 52643 [AAGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTT] HWI-EAS406:6:22:1573:1772#0 1 1 76 52568 52643 [AGAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTC] HWI-EAS406:7:4:166:1389#0 1 1 76 52569 52644 [GAACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCT] HWI-EAS406:6:57:1119:1514#0 1 1 76 52570 52645 [AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTA] HWI-EAS406:7:34:1780:1208#0 1 1 76 52571 52646 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:5:79:1307:885#0 1 1 76 52572 52647 [ACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAA] HWI-EAS406:6:28:1476:1985#0 1 1 76 52572 52647 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:5:89:602:1500#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:6:61:350:1908#0 1 1 76 52573 52648 [CTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAG] HWI-EAS406:7:99:1709:1108#0 1 1 76 52573 52648 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:6:39:1301:1592#0 1 1 76 52576 52651 [GGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAG] HWI-EAS406:7:93:355:996#0 1 1 76 52576 52651 [AAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAG] HWI-EAS406:7:44:589:1076#0 1 1 76 52578 52653 [CTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTA] HWI-EAS406:7:66:567:977#0 1 1 76 52582 52657 [AGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGA] HWI-EAS406:7:64:1507:1368#0 1 1 76 52586 52661 [TGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGC] HWI-EAS406:7:52:1280:1062#0 1 1 76 52588 52663 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:22:795:1941#0 1 1 76 52589 52664 [GAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCA] HWI-EAS406:7:26:284:1360#0 1 1 76 52589 52664 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:5:43:722:1079#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:5:111:1769#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:6:39:680:1003#0 1 1 76 52590 52665 [AAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCAC] HWI-EAS406:7:66:210:1927#0 1 1 76 52590 52665 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:5:4:82:684#0 1 1 76 52591 52666 [AGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACA] HWI-EAS406:6:31:1437:1285#0 1 1 76 52591 52666 [CTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTC] HWI-EAS406:6:68:737:1957#0 1 1 76 52594 52669 [GGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTA] HWI-EAS406:7:43:1317:534#0 1 1 76 52596 52671 [GGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTAC] HWI-EAS406:7:18:1662:381#0 1 1 76 52597 52672 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:5:71:466:482#0 1 1 76 52600 52675 [GAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGT] HWI-EAS406:6:60:840:1286#0 1 1 76 52600 52675 [GATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGG] HWI-EAS406:6:54:1094:829#0 1 1 76 52602 52677 [ATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGT] HWI-EAS406:6:65:1104:543#0 1 1 76 52603 52678 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:3:262:446#0 1 1 76 52605 52680 [TCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGC] HWI-EAS406:5:99:1259:1454#0 1 1 76 52605 52680 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:5:64:878:239#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:6:2:290:554#0 1 1 76 52606 52681 [CAAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCT] HWI-EAS406:7:71:1076:1486#0 1 1 76 52606 52681 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:5:80:232:812#0 1 1 76 52607 52682 [AAGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTC] HWI-EAS406:7:98:704:841#0 1 1 76 52607 52682 [AGGGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCT] HWI-EAS406:7:8:1752:1537#0 1 1 76 52608 52683 [GGCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTC] HWI-EAS406:7:79:360:885#0 1 1 76 52610 52685 [GCTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCC] HWI-EAS406:7:74:1334:1841#0 1 1 76 52611 52686 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:5:84:1424:1849#0 1 1 76 52612 52687 [CTACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCT] HWI-EAS406:6:67:1481:1218#0 1 1 76 52612 52687 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:28:1421:1393#0 1 1 76 52613 52688 [TACCAAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTA] HWI-EAS406:6:35:949:1809#0 1 1 76 52613 52688 [AAGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTA] HWI-EAS406:7:19:1321:1012#0 1 1 76 52617 52692 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:30:762:1326#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:5:84:672:1802#0 1 1 76 52618 52693 [AGCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTAC] HWI-EAS406:6:87:177:1204#0 1 1 76 52618 52693 [GCTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACA] HWI-EAS406:5:84:1245:399#0 1 1 76 52619 52694 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:22:1430:399#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:5:73:930:335#0 1 1 76 52620 52695 [CTCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAG] HWI-EAS406:7:27:1395:1095#0 1 1 76 52620 52695 [TCAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGA] HWI-EAS406:6:25:1531:1308#0 1 1 76 52621 52696 [CAATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAG] HWI-EAS406:5:60:329:1295#0 1 1 76 52622 52697 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1399:1567#0 1 1 76 52623 52698 [AATGCCCACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGC] HWI-EAS406:6:82:1401:1568#0 1 1 76 52623 52698 [CACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACT] HWI-EAS406:5:55:1359:18#0 1 1 76 52629 52704 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:5:60:1059:1422#0 1 1 76 52630 52705 [ACCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTG] HWI-EAS406:6:4:537:1682#0 1 1 76 52630 52705 [CCCCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGG] HWI-EAS406:6:68:446:775#0 1 1 76 52631 52706 [CCATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGAT] HWI-EAS406:5:77:1513:381#0 1 1 76 52633 52708 [CATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATA] HWI-EAS406:6:32:1019:1170#0 1 1 76 52634 52709 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:27:1235:1180#0 1 1 76 52635 52710 [ATGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC] HWI-EAS406:6:64:181:772#0 1 1 76 52635 52710 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:38:595:2023#0 1 1 76 52636 52711 [TGGCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACA] HWI-EAS406:7:67:901:893#0 1 1 76 52636 52711 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:6:11:874:891#0 1 1 76 52638 52713 [GCTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGC] HWI-EAS406:7:73:1469:541#0 1 1 76 52638 52713 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:64:441:449#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:68:357:988#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:6:95:433:1083#0 1 1 76 52639 52714 [CTTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCT] HWI-EAS406:7:9:1061:1695#0 1 1 76 52639 52714 [TTTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTA] HWI-EAS406:7:9:910:60#0 1 1 76 52640 52715 [TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAG] HWI-EAS406:6:53:370:1905#0 1 1 76 52641 52716 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:28:140:1966#0 1 1 76 52646 52721 [AAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATG] HWI-EAS406:5:37:692:1780#0 1 1 76 52646 52721 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:5:47:548:1945#0 1 1 76 52647 52722 [AGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGG] HWI-EAS406:7:77:851:1718#0 1 1 76 52647 52722 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:5:13:1567:1317#0 1 1 76 52648 52723 [GGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGG] HWI-EAS406:6:10:96:380#0 1 1 76 52648 52723 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:5:76:738:1384#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:35:1399:224#0 1 1 76 52650 52725 [AGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTT] HWI-EAS406:7:94:182:673#0 1 1 76 52650 52725 [GAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTC] HWI-EAS406:6:22:1505:677#0 1 1 76 52651 52726 [AGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCT] HWI-EAS406:6:13:813:876#0 1 1 76 52652 52727 [GCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTT] HWI-EAS406:5:61:462:1645#0 1 1 76 52653 52728 [TTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCT] HWI-EAS406:7:85:795:1004#0 1 1 76 52655 52730 [TACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTT] HWI-EAS406:7:56:851:23#0 1 1 76 52656 52731 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:5:6:1008:413#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:6:51:585:982#0 1 1 76 52657 52732 [ACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTG] HWI-EAS406:7:23:336:1844#0 1 1 76 52657 52732 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:5:16:411:1866#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:20:546:48#0 1 1 76 52658 52733 [CTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGG] HWI-EAS406:6:24:1344:1284#0 1 1 76 52658 52733 [TGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGG] HWI-EAS406:5:26:156:1919#0 1 1 76 52659 52734 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:5:19:1560:1097#0 1 1 76 52660 52735 [GAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGG] HWI-EAS406:7:16:1163:1496#0 1 1 76 52660 52735 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:27:433:1044#0 1 1 76 52661 52736 [AGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGA] HWI-EAS406:7:65:1044:297#0 1 1 76 52661 52736 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:66:824:745#0 1 1 76 52662 52737 [GCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAG] HWI-EAS406:6:72:187:1085#0 1 1 76 52662 52737 [CACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGA] HWI-EAS406:7:36:1290:958#0 1 1 76 52663 52738 [ACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAA] HWI-EAS406:7:81:1719:703#0 1 1 76 52664 52739 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:12:1322:1927#0 1 1 76 52665 52740 [CATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAAC] HWI-EAS406:5:74:1281:286#0 1 1 76 52665 52740 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:5:58:49:176#0 1 1 76 52666 52741 [ATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACT] HWI-EAS406:6:59:1083:530#0 1 1 76 52666 52741 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:38:80:785#0 1 1 76 52669 52744 [CTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAG] HWI-EAS406:6:91:1656:759#0 1 1 76 52669 52744 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:25:719:1348#0 1 1 76 52670 52745 [TACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGG] HWI-EAS406:7:32:814:32#0 1 1 76 52670 52745 [ACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGA] HWI-EAS406:7:1:1153:1584#0 1 1 76 52671 52746 [CCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAG] HWI-EAS406:5:14:755:1230#0 1 1 76 52672 52747 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:8:1435:965#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:5:55:660:4#0 1 1 76 52674 52749 [GTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGA] HWI-EAS406:7:19:932:1420#0 1 1 76 52674 52749 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:6:22:1593:317#0 1 1 76 52679 52754 [GCTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAG] HWI-EAS406:7:44:1033:557#0 1 1 76 52679 52754 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:5:61:27:362#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:6:96:1530:676#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:47:1188:206#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:62:257:2014#0 1 1 76 52680 52755 [CTCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGA] HWI-EAS406:7:100:1432:1531#0 1 1 76 52680 52755 [TCTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAA] HWI-EAS406:7:63:827:1142#0 1 1 76 52681 52756 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:5:71:19:953#0 1 1 76 52682 52757 [CTTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAG] HWI-EAS406:6:90:980:1734#0 1 1 76 52682 52757 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:75:1453:957#0 1 1 76 52683 52758 [TTCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGA] HWI-EAS406:7:90:1220:1465#0 1 1 76 52683 52758 [TCCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAG] HWI-EAS406:6:72:232:113#0 1 1 76 52684 52759 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:6:74:1465:21#0 1 1 76 52685 52760 [CCTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGC] HWI-EAS406:7:35:1727:756#0 1 1 76 52685 52760 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:20:1116:1667#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:5:75:1545:1205#0 1 1 76 52686 52761 [CTAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCT] HWI-EAS406:6:75:345:808#0 1 1 76 52686 52761 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:6:39:902:457#0 1 1 76 52687 52762 [TAAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTG] HWI-EAS406:7:49:1144:1840#0 1 1 76 52687 52762 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:5:89:719:1932#0 1 1 76 52688 52763 [AAGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGG] HWI-EAS406:7:49:1562:29#0 1 1 76 52688 52763 [AGTACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGT] HWI-EAS406:7:89:1328:1251#0 1 1 76 52689 52764 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:8:652:1592#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:6:9:1617:799#0 1 1 76 52691 52766 [TACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTG] HWI-EAS406:7:57:304:1400#0 1 1 76 52691 52766 [ACAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGA] HWI-EAS406:5:74:1597:1977#0 1 1 76 52692 52767 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:6:3:1436:826#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:67:916:1425#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:82:300:1277#0 1 1 76 52693 52768 [CAGAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGAC] HWI-EAS406:7:95:284:231#0 1 1 76 52693 52768 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:5:49:1356:1604#0 1 1 76 52695 52770 [GAGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAA] HWI-EAS406:7:84:460:1196#0 1 1 76 52695 52770 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:5:31:397:693#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:48:789:839#0 1 1 76 52696 52771 [AGCCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAAC] HWI-EAS406:6:78:308:217#0 1 1 76 52696 52771 [CCAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACAT] HWI-EAS406:5:92:833:2028#0 1 1 76 52698 52773 [CAGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATG] HWI-EAS406:7:92:954:996#0 1 1 76 52699 52774 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:5:65:165:1131#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:36:691:7#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:73:1136:500#0 1 1 76 52700 52775 [AGACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGG] HWI-EAS406:6:96:1118:976#0 1 1 76 52700 52775 [ACTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTA] HWI-EAS406:6:84:330:461#0 1 1 76 52702 52777 [CTGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAA] HWI-EAS406:6:57:756:1865#0 1 1 76 52703 52778 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:5:85:86:1811#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:34:1489:1055#0 1 1 76 52704 52779 [TGGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAA] HWI-EAS406:7:87:1313:1321#0 1 1 76 52704 52779 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:5:64:512:1642#0 1 1 76 52705 52780 [GGATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG] HWI-EAS406:7:17:769:337#0 1 1 76 52705 52780 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:5:66:981:1355#0 1 1 76 52706 52781 [GATACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGA] HWI-EAS406:6:95:1395:605#0 1 1 76 52706 52781 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:6:54:371:1133#0 1 1 76 52709 52784 [ACAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTG] HWI-EAS406:7:85:356:1379#0 1 1 76 52709 52784 [CAGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGA] HWI-EAS406:5:33:1446:179#0 1 1 76 52710 52785 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:5:44:1170:794#0 1 1 76 52711 52786 [AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGAT] HWI-EAS406:7:100:474:1208#0 1 1 76 52711 52786 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:54:1730:327#0 1 1 76 52713 52788 [CTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGC] HWI-EAS406:6:90:27:1950#0 1 1 76 52713 52788 [CAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTC] HWI-EAS406:7:20:1428:1247#0 1 1 76 52717 52792 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:5:26:209:353#0 1 1 76 52718 52793 [AATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCT] HWI-EAS406:6:11:1176:1783#0 1 1 76 52718 52793 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:8:1579:696#0 1 1 76 52719 52794 [ATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTA] HWI-EAS406:6:38:1393:205#0 1 1 76 52719 52794 [GGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACA] HWI-EAS406:7:65:96:1531#0 1 1 76 52721 52796 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:5:69:547:743#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:6:28:1411:1934#0 1 1 76 52724 52799 [TTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTG] HWI-EAS406:7:7:1352:1238#0 1 1 76 52724 52799 [TCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGG] HWI-EAS406:6:68:1612:781#0 1 1 76 52725 52800 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:29:562:58#0 1 1 76 52730 52805 [TTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACC] HWI-EAS406:6:75:1431:401#0 1 1 76 52730 52805 [GGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACG] HWI-EAS406:5:6:754:1118#0 1 1 76 52733 52808 [GGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGA] HWI-EAS406:5:71:373:1022#0 1 1 76 52734 52809 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:20:289:1552#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:5:92:213:665#0 1 1 76 52735 52810 [GAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGAC] HWI-EAS406:7:54:1760:1267#0 1 1 76 52735 52810 [AGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACA] HWI-EAS406:7:48:1621:1285#0 1 1 76 52736 52811 [AACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGA] HWI-EAS406:7:57:367:1568#0 1 1 76 52738 52813 [ACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAG] HWI-EAS406:6:57:1192:31#0 1 1 76 52739 52814 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:6:100:491:1058#0 1 1 76 52740 52815 [CTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGG] HWI-EAS406:7:12:213:1715#0 1 1 76 52740 52815 [GAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCA] HWI-EAS406:5:10:1671:1999#0 1 1 76 52742 52817 [AGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAG] HWI-EAS406:7:31:820:772#0 1 1 76 52743 52818 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:18:1108:1468#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:5:93:973:1263#0 1 1 76 52747 52822 [GGATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGA] HWI-EAS406:6:54:325:1697#0 1 1 76 52747 52822 [GATGCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAA] HWI-EAS406:7:63:444:1270#0 1 1 76 52748 52823 [GCAGAAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAG] HWI-EAS406:5:18:996:2006#0 1 1 76 52751 52826 [AAGAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGA] HWI-EAS406:6:56:1047:1693#0 1 1 76 52755 52830 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:6:70:1271:681#0 1 1 76 52757 52832 [GAGCTGGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATA] HWI-EAS406:7:89:353:1220#0 1 1 76 52757 52832 [GGTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAG] HWI-EAS406:7:41:92:805#0 1 1 76 52762 52837 [GTTGACAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGA] HWI-EAS406:5:29:1681:802#0 1 1 76 52763 52838 [CAACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGG] HWI-EAS406:7:36:675:850#0 1 1 76 52768 52843 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:601:809#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:5:31:820:932#0 1 1 76 52769 52844 [AACATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGA] HWI-EAS406:6:27:885:1266#0 1 1 76 52769 52844 [CATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAA] HWI-EAS406:6:62:569:1444#0 1 1 76 52771 52846 [ATGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAG] HWI-EAS406:7:30:95:1595#0 1 1 76 52772 52847 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:18:1770:316#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:6:55:911:1113#0 1 1 76 52773 52848 [TGGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGA] HWI-EAS406:7:29:263:253#0 1 1 76 52773 52848 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:5:77:871:893#0 1 1 76 52774 52849 [GGTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAG] HWI-EAS406:6:16:1436:1900#0 1 1 76 52774 52849 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:5:4:859:1091#0 1 1 76 52775 52850 [GTAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA] HWI-EAS406:7:29:1141:1851#0 1 1 76 52775 52850 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:6:26:595:1371#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:40:1232:1393#0 1 1 76 52776 52851 [TAAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGAT] HWI-EAS406:7:89:1396:1026#0 1 1 76 52776 52851 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:6:2:1627:472#0 1 1 76 52777 52852 [AAAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATC] HWI-EAS406:7:99:636:1603#0 1 1 76 52777 52852 [AAGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCA] HWI-EAS406:7:77:177:1715#0 1 1 76 52778 52853 [AGAGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAA] HWI-EAS406:7:100:309:1438#0 1 1 76 52779 52854 [GCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGG] HWI-EAS406:6:21:1395:910#0 1 1 76 52787 52862 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:5:59:145:1175#0 1 1 76 52792 52867 [CTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGAC] HWI-EAS406:6:14:1246:1693#0 1 1 76 52792 52867 [ACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAA] HWI-EAS406:7:77:1713:1632#0 1 1 76 52794 52869 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:5:39:548:1024#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:38:1520:842#0 1 1 76 52801 52876 [AGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGAC] HWI-EAS406:7:40:347:1850#0 1 1 76 52801 52876 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:6:89:742:643#0 1 1 76 52805 52880 [CACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTAC] HWI-EAS406:7:75:1154:839#0 1 1 76 52805 52880 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:5:78:754:459#0 1 1 76 52806 52881 [ACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACT] HWI-EAS406:6:1:384:1591#0 1 1 76 52806 52881 [ACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCAT] HWI-EAS406:7:22:1375:1195#0 1 1 76 52809 52884 [CAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATT] HWI-EAS406:5:1:1719:1033#0 1 1 76 52810 52885 [GAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGC] HWI-EAS406:6:90:835:1482#0 1 1 76 52812 52887 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:5:24:136:1541#0 1 1 76 52815 52890 [GCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGA] HWI-EAS406:6:65:1614:1321#0 1 1 76 52815 52890 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:5:51:377:1153#0 1 1 76 52818 52893 [GTAGAACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAA] HWI-EAS406:7:66:266:1654#0 1 1 76 52818 52893 [AACAGATGATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCA] HWI-EAS406:6:60:351:367#0 1 1 76 52822 52897 [ATAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGA] HWI-EAS406:5:90:750:261#0 1 1 76 52830 52905 [TAAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAG] HWI-EAS406:7:24:564:704#0 1 1 76 52831 52906 [AAGCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGC] HWI-EAS406:7:36:1312:1239#0 1 1 76 52832 52907 [GCAGACGAGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAG] HWI-EAS406:7:62:1248:1996#0 1 1 76 52834 52909 [AGGAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGT] HWI-EAS406:7:74:1634:372#0 1 1 76 52841 52916 [GAAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTT] HWI-EAS406:5:24:1213:1202#0 1 1 76 52843 52918 [AAAGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTG] HWI-EAS406:5:17:1388:1409#0 1 1 76 52844 52919 [AGAGATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTT] HWI-EAS406:7:67:1179:690#0 1 1 76 52846 52921 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:6:73:723:696#0 1 1 76 52849 52924 [GATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGT] HWI-EAS406:7:37:1631:1209#0 1 1 76 52849 52924 [ATCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTA] HWI-EAS406:6:86:426:1963#0 1 1 76 52850 52925 [CAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAAC] HWI-EAS406:6:95:1476:426#0 1 1 76 52852 52927 [TTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAG] HWI-EAS406:6:67:1618:794#0 1 1 76 52858 52933 [TTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGC] HWI-EAS406:7:83:202:1767#0 1 1 76 52859 52934 [TGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCA] HWI-EAS406:7:68:1139:1819#0 1 1 76 52860 52935 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:6:68:1729:626#0 1 1 76 52863 52938 [AAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGA] HWI-EAS406:7:32:1013:1608#0 1 1 76 52863 52938 [GACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAG] HWI-EAS406:5:28:1506:37#0 1 1 76 52865 52940 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:5:15:1255:1708#0 1 1 76 52867 52942 [CAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGAT] HWI-EAS406:7:81:1212:713#0 1 1 76 52867 52942 [AGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCC] HWI-EAS406:7:10:1250:1965#0 1 1 76 52869 52944 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:69:319:840#0 1 1 76 52874 52949 [GACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTG] HWI-EAS406:5:87:253:1053#0 1 1 76 52874 52949 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:45:113:1763#0 1 1 76 52878 52953 [TACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGT] HWI-EAS406:7:77:1188:580#0 1 1 76 52878 52953 [CTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCA] HWI-EAS406:5:5:491:1005#0 1 1 76 52880 52955 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:6:73:850:1573#0 1 1 76 52882 52957 [CATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAAT] HWI-EAS406:7:82:431:428#0 1 1 76 52882 52957 [ATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATG] HWI-EAS406:6:78:691:1612#0 1 1 76 52883 52958 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:41:1719:1887#0 1 1 76 52884 52959 [TTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGA] HWI-EAS406:6:100:1346:1547#0 1 1 76 52884 52959 [TGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAG] HWI-EAS406:5:6:900:884#0 1 1 76 52885 52960 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:61:1086:1684#0 1 1 76 52886 52961 [GCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGG] HWI-EAS406:6:81:942:1767#0 1 1 76 52886 52961 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:5:769:2001#0 1 1 76 52888 52963 [TGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTT] HWI-EAS406:5:55:734:1718#0 1 1 76 52888 52963 [AAAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAG] HWI-EAS406:7:84:1333:1560#0 1 1 76 52891 52966 [AAAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGG] HWI-EAS406:6:18:443:1002#0 1 1 76 52892 52967 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:6:84:1247:1172#0 1 1 76 52893 52968 [AAGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGG] HWI-EAS406:7:4:304:1492#0 1 1 76 52893 52968 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:11:1749:1681#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:6:31:1333:1527#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:63:113:503#0 1 1 76 52894 52969 [AGCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGT] HWI-EAS406:7:80:1392:481#0 1 1 76 52894 52969 [GCAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTT] HWI-EAS406:7:20:338:25#0 1 1 76 52895 52970 [CAACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTT] HWI-EAS406:5:38:934:1502#0 1 1 76 52896 52971 [AACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTG] HWI-EAS406:5:85:776:1725#0 1 1 76 52897 52972 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:6:13:1228:1046#0 1 1 76 52898 52973 [ACCCAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGG] HWI-EAS406:7:46:1190:1221#0 1 1 76 52898 52973 [CAAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAG] HWI-EAS406:6:63:305:1144#0 1 1 76 52901 52976 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:6:48:1216:572#0 1 1 76 52902 52977 [AAGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGG] HWI-EAS406:7:99:1265:274#0 1 1 76 52902 52977 [AGAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGT] HWI-EAS406:6:11:1471:1239#0 1 1 76 52903 52978 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:20:1218:1653#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:6:100:1058:560#0 1 1 76 52904 52979 [GAGCAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTC] HWI-EAS406:7:37:765:354#0 1 1 76 52904 52979 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:5:85:988:89#0 1 1 76 52907 52982 [CAGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAG] HWI-EAS406:6:24:1088:1499#0 1 1 76 52907 52982 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:5:69:1278:1921#0 1 1 76 52908 52983 [AGCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGA] HWI-EAS406:6:49:886:976#0 1 1 76 52908 52983 [GCTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAG] HWI-EAS406:7:97:1262:733#0 1 1 76 52909 52984 [CTGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGG] HWI-EAS406:7:80:873:1646#0 1 1 76 52910 52985 [TGAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGA] HWI-EAS406:5:74:311:1222#0 1 1 76 52911 52986 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:2:1609:513#0 1 1 76 52912 52987 [GAAGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAG] HWI-EAS406:7:6:655:560#0 1 1 76 52912 52987 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:5:65:175:674#0 1 1 76 52914 52989 [AGTTTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTT] HWI-EAS406:6:67:977:2#0 1 1 76 52914 52989 [TTGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTG] HWI-EAS406:5:87:785:887#0 1 1 76 52917 52992 [TGTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGT] HWI-EAS406:7:30:1447:1855#0 1 1 76 52918 52993 [GTTGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTT] HWI-EAS406:7:71:677:1038#0 1 1 76 52919 52994 [TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTC] HWI-EAS406:5:74:859:201#0 1 1 76 52921 52996 [TAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATC] HWI-EAS406:6:56:1319:796#0 1 1 76 52924 52999 [CTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAAC] HWI-EAS406:5:14:611:1579#0 1 1 76 52927 53002 [TCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACA] HWI-EAS406:7:38:1155:2035#0 1 1 76 52928 53003 [AAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACA] HWI-EAS406:7:8:283:983#0 1 1 76 52931 53006 [CAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATG] HWI-EAS406:7:25:45:1377#0 1 1 76 52934 53009 [AGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGG] HWI-EAS406:7:40:1449:1249#0 1 1 76 52935 53010 [GGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGT] HWI-EAS406:7:90:1220:1315#0 1 1 76 52936 53011 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:6:20:842:1693#0 1 1 76 52948 53023 [TGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAA] HWI-EAS406:7:76:1565:1995#0 1 1 76 52948 53023 [TCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGA] HWI-EAS406:7:59:1788:1538#0 1 1 76 52953 53028 [AGGGTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCA] HWI-EAS406:6:20:1735:1047#0 1 1 76 52965 53040 [GTTTGGAAGGTCAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTA] HWI-EAS406:6:94:939:1047#0 1 1 76 52968 53043 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:5:22:330:789#0 1 1 76 52979 53054 [CAAGAGGAGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACC] HWI-EAS406:7:70:1669:163#0 1 1 76 52979 53054 [AGTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAA] HWI-EAS406:6:34:1002:1940#0 1 1 76 52986 53061 [GTTGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAA] HWI-EAS406:7:22:1333:1659#0 1 1 76 52987 53062 [TGTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATC] HWI-EAS406:7:71:625:1767#0 1 1 76 52989 53064 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:5:82:1551:1229#0 1 1 76 52990 53065 [GTGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCC] HWI-EAS406:7:23:1642:1419#0 1 1 76 52990 53065 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:5:16:562:1965#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:6:34:665:833#0 1 1 76 52991 53066 [TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCT] HWI-EAS406:7:70:203:1497#0 1 1 76 52991 53066 [GTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTA] HWI-EAS406:6:72:348:1278#0 1 1 76 52992 53067 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:10:766:1082#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:15:1036:645#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:70:488:482#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:5:97:1715:1971#0 1 1 76 52993 53068 [TTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTAT] HWI-EAS406:7:17:1509:1035#0 1 1 76 52993 53068 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:5:86:82:1111#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:6:81:669:867#0 1 1 76 52995 53070 [TCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCC] HWI-EAS406:7:23:798:1374#0 1 1 76 52995 53070 [TCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAA] HWI-EAS406:6:9:928:223#0 1 1 76 52998 53073 [CAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAAC] HWI-EAS406:5:74:1187:1738#0 1 1 76 52999 53074 [AACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACA] HWI-EAS406:7:72:535:1762#0 1 1 76 53000 53075 [ACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAA] HWI-EAS406:6:67:691:451#0 1 1 76 53001 53076 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:6:10:1056:1388#0 1 1 76 53003 53078 [AACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACC] HWI-EAS406:7:67:1043:1053#0 1 1 76 53003 53078 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:26:1302:1511#0 1 1 76 53005 53080 [CAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAA] HWI-EAS406:7:96:1696:1630#0 1 1 76 53005 53080 [AATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAAC] HWI-EAS406:5:68:1329:1227#0 1 1 76 53006 53081 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:6:96:361:1171#0 1 1 76 53007 53082 [ATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACA] HWI-EAS406:7:66:1046:1538#0 1 1 76 53007 53082 [GTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAG] HWI-EAS406:6:5:1784:1359#0 1 1 76 53010 53085 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:6:85:984:1150#0 1 1 76 53013 53088 [GCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGG] HWI-EAS406:7:97:1335:1860#0 1 1 76 53013 53088 [CTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGC] HWI-EAS406:7:53:1507:1400#0 1 1 76 53014 53089 [ACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCC] HWI-EAS406:5:83:731:357#0 1 1 76 53019 53094 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:21:1623:1222#0 1 1 76 53020 53095 [CAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCG] HWI-EAS406:6:57:293:559#0 1 1 76 53020 53095 [AGGAGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAG] HWI-EAS406:6:58:278:902#0 1 1 76 53025 53100 [AGCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAA] HWI-EAS406:7:81:1340:993#0 1 1 76 53028 53103 [GCCCAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAAC] HWI-EAS406:6:74:463:426#0 1 1 76 53029 53104 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:5:35:1464:1782#0 1 1 76 53032 53107 [CAACTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAAC] HWI-EAS406:6:87:1247:611#0 1 1 76 53032 53107 [CTTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAG] HWI-EAS406:6:76:1017:1131#0 1 1 76 53035 53110 [TTTCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGC] HWI-EAS406:6:33:1752:469#0 1 1 76 53036 53111 [TCAGTACAACAACTACCAACAGAAATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAA] HWI-EAS406:5:76:1166:1108#0 1 1 76 53038 53113 [ACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGG] HWI-EAS406:6:36:443:1615#0 1 1 76 53073 53148 [TGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCT] HWI-EAS406:6:59:1322:1397#0 1 1 76 53086 53161 [ATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGA] HWI-EAS406:7:89:825:731#0 1 1 76 53091 53166 [CGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAG] HWI-EAS406:6:77:994:1321#0 1 1 76 53094 53169 [CAAGAAACAACCAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAG] HWI-EAS406:5:45:852:1913#0 1 1 76 53097 53172 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:6:10:326:468#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:56:1362:1475#0 1 1 76 53108 53183 [CAGCAAGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCT] HWI-EAS406:7:72:1291:311#0 1 1 76 53108 53183 [AGGCAGCTATCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTG] HWI-EAS406:7:17:466:111#0 1 1 76 53113 53188 [TCAGCCTCAGCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATC] HWI-EAS406:7:66:68:337#0 1 1 76 53122 53197 [TTGGAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCT] HWI-EAS406:6:82:241:1543#0 1 1 76 53198 53273 [GTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAA] HWI-EAS406:6:38:237:441#0 1 1 76 53217 53292 [GAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAAT] HWI-EAS406:7:19:1518:715#0 1 1 76 53219 53294 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:5:83:1397:1100#0 1 1 76 53220 53295 [AGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATT] HWI-EAS406:7:65:499:294#0 1 1 76 53220 53295 [GAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTC] HWI-EAS406:6:63:1490:915#0 1 1 76 53221 53296 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:5:59:1092:2030#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:6:47:258:1736#0 1 1 76 53222 53297 [AAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCT] HWI-EAS406:7:41:1735:1335#0 1 1 76 53222 53297 [AGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTC] HWI-EAS406:6:70:64:1370#0 1 1 76 53223 53298 [ACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACA] HWI-EAS406:7:6:486:803#0 1 1 76 53226 53301 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:5:52:1062:869#0 1 1 76 53229 53304 [TTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCT] HWI-EAS406:7:56:632:1389#0 1 1 76 53229 53304 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:6:85:1131:1902#0 1 1 76 53230 53305 [TGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTT] HWI-EAS406:7:12:938:467#0 1 1 76 53230 53305 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:17:718:33#0 1 1 76 53232 53307 [GTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGC] HWI-EAS406:5:61:110:1832#0 1 1 76 53232 53307 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:6:100:986:193#0 1 1 76 53234 53309 [TATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTT] HWI-EAS406:7:21:1696:587#0 1 1 76 53234 53309 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:20:380:87#0 1 1 76 53235 53310 [ATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTC] HWI-EAS406:6:42:431:1815#0 1 1 76 53235 53310 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:33:127:1815#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:5:96:508:870#0 1 1 76 53236 53311 [TGAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCT] HWI-EAS406:7:52:798:712#0 1 1 76 53236 53311 [GAGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTA] HWI-EAS406:5:56:1533:1579#0 1 1 76 53237 53312 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:5:72:1534:1868#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:6:30:1499:778#0 1 1 76 53238 53313 [AGTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTAC] HWI-EAS406:7:7:579:773#0 1 1 76 53238 53313 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:9:793:1263#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:58:1341:937#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:63:976:865#0 1 1 76 53239 53314 [GTTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACA] HWI-EAS406:7:98:571:1639#0 1 1 76 53239 53314 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:8:1577:705#0 1 1 76 53240 53315 [TTGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAG] HWI-EAS406:6:74:408:1585#0 1 1 76 53240 53315 [TGAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGT] HWI-EAS406:7:99:179:769#0 1 1 76 53241 53316 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:29:408:1113#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:5:72:124:367#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:16:327:1812#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:6:59:789:1513#0 1 1 76 53242 53317 [GAAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTC] HWI-EAS406:7:66:1416:1146#0 1 1 76 53242 53317 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:5:37:953:299#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:30:1613:1665#0 1 1 76 53243 53318 [AAGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCA] HWI-EAS406:7:100:711:1721#0 1 1 76 53243 53318 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:5:7:38:1359#0 1 1 76 53244 53319 [AGAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAA] HWI-EAS406:6:7:1476:1748#0 1 1 76 53244 53319 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:28:678:746#0 1 1 76 53245 53320 [GAACCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAG] HWI-EAS406:7:45:1088:583#0 1 1 76 53245 53320 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:5:43:1382:957#0 1 1 76 53248 53323 [CCTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAAT] HWI-EAS406:6:32:56:484#0 1 1 76 53248 53323 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:44:386:1988#0 1 1 76 53249 53324 [CTTCATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATT] HWI-EAS406:7:78:14:1600#0 1 1 76 53249 53324 [ATTCCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGA] HWI-EAS406:6:60:676:884#0 1 1 76 53253 53328 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:12:678:190#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:47:1560:929#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:76:1176:1214#0 1 1 76 53256 53331 [CCAAGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAA] HWI-EAS406:5:84:1300:1222#0 1 1 76 53256 53331 [AGATTGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCA] HWI-EAS406:6:71:506:1906#0 1 1 76 53259 53334 [TGATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTT] HWI-EAS406:5:14:149:1789#0 1 1 76 53263 53338 [ATGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC] HWI-EAS406:6:37:1358:195#0 1 1 76 53265 53340 [TGGGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCT] HWI-EAS406:7:26:892:1572#0 1 1 76 53266 53341 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:5:58:643:299#0 1 1 76 53268 53343 [GGAGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTC] HWI-EAS406:6:47:1677:1260#0 1 1 76 53268 53343 [AGCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCA] HWI-EAS406:7:55:524:1341#0 1 1 76 53270 53345 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:6:5:673:143#0 1 1 76 53276 53351 [AATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACA] HWI-EAS406:7:38:1070:231#0 1 1 76 53276 53351 [TGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACT] HWI-EAS406:7:61:728:1124#0 1 1 76 53278 53353 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:6:94:67:550#0 1 1 76 53279 53354 [GAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTC] HWI-EAS406:7:25:1555:517#0 1 1 76 53279 53354 [CAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAAT] HWI-EAS406:5:26:1782:1487#0 1 1 76 53287 53362 [AACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATC] HWI-EAS406:7:99:1410:678#0 1 1 76 53288 53363 [ACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCG] HWI-EAS406:7:12:1549:1905#0 1 1 76 53289 53364 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:94:660:1298#0 1 1 76 53290 53365 [CAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGC] HWI-EAS406:7:99:486:564#0 1 1 76 53290 53365 [AAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCC] HWI-EAS406:7:6:1318:904#0 1 1 76 53291 53366 [ATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAG] HWI-EAS406:5:50:344:275#0 1 1 76 53293 53368 [CTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAA] HWI-EAS406:6:61:536:1994#0 1 1 76 53296 53371 [TCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAG] HWI-EAS406:6:96:1691:1669#0 1 1 76 53297 53372 [CACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGG] HWI-EAS406:6:53:756:1438#0 1 1 76 53298 53373 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:5:32:512:1543#0 1 1 76 53300 53375 [CACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGAT] HWI-EAS406:6:43:1435:823#0 1 1 76 53300 53375 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:6:16:1107:1198#0 1 1 76 53301 53376 [ACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATC] HWI-EAS406:7:21:1350:1692#0 1 1 76 53301 53376 [CCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCT] HWI-EAS406:6:9:230:1428#0 1 1 76 53302 53377 [TGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTA] HWI-EAS406:7:72:258:511#0 1 1 76 53305 53380 [TCTACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTG] HWI-EAS406:5:33:1345:1342#0 1 1 76 53309 53384 [TACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGA] HWI-EAS406:6:37:614:157#0 1 1 76 53311 53386 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:5:12:1752:1462#0 1 1 76 53312 53387 [ACAGTCAAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAA] HWI-EAS406:6:95:1625:892#0 1 1 76 53312 53387 [AAGAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTG] HWI-EAS406:7:27:354:804#0 1 1 76 53318 53393 [GAATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGAC] HWI-EAS406:6:70:639:1667#0 1 1 76 53320 53395 [AATTTGGAGAATCAGTTTGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACC] HWI-EAS406:6:8:832:722#0 1 1 76 53321 53396 [TGCTTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCC] HWI-EAS406:6:12:710:1058#0 1 1 76 53338 53413 [CTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCT] HWI-EAS406:5:68:1604:1414#0 1 1 76 53352 53427 [CAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGA] HWI-EAS406:5:91:987:915#0 1 1 76 53357 53432 [TCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGT] HWI-EAS406:6:5:1149:1954#0 1 1 76 53362 53437 [CTACCTGGAAAATCTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTA] HWI-EAS406:5:60:619:1662#0 1 1 76 53378 53453 [CTGACCCAAATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAA] HWI-EAS406:5:25:738:87#0 1 1 76 53391 53466 [ATCCTAAGGAAGCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGA] HWI-EAS406:7:41:1398:1465#0 1 1 76 53400 53475 [CGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACA] HWI-EAS406:5:99:882:1541#0 1 1 76 53429 53504 [AAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATG] HWI-EAS406:5:76:867:129#0 1 1 76 53438 53513 [ACCTCCTAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTG] HWI-EAS406:6:2:219:1094#0 1 1 76 53446 53521 [TAGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTT] HWI-EAS406:5:58:650:328#0 1 1 76 53452 53527 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:5:45:1430:1123#0 1 1 76 53453 53528 [AGAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTG] HWI-EAS406:7:46:1727:1121#0 1 1 76 53453 53528 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:60:1355:1749#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:6:72:1061:265#0 1 1 76 53454 53529 [GAACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGA] HWI-EAS406:7:64:701:178#0 1 1 76 53454 53529 [ACCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATG] HWI-EAS406:6:66:935:30#0 1 1 76 53456 53531 [CCCTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGA] HWI-EAS406:7:90:175:1368#0 1 1 76 53457 53532 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:43:1033:1183#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:6:86:822:312#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:32:366:1628#0 1 1 76 53459 53534 [CTCACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGA] HWI-EAS406:7:34:1721:259#0 1 1 76 53459 53534 [ACCAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGA] HWI-EAS406:7:44:690:1265#0 1 1 76 53462 53537 [CAAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATC] HWI-EAS406:5:67:1193:1073#0 1 1 76 53464 53539 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:8:155:1879#0 1 1 76 53465 53540 [AAGGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCA] HWI-EAS406:5:61:892:217#0 1 1 76 53465 53540 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:5:61:1148:844#0 1 1 76 53467 53542 [GGATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAAT] HWI-EAS406:6:35:343:246#0 1 1 76 53467 53542 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:5:53:944:1239#0 1 1 76 53468 53543 [GATGCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATG] HWI-EAS406:6:19:1066:506#0 1 1 76 53468 53543 [GCTGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACG] HWI-EAS406:6:10:1058:483#0 1 1 76 53471 53546 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:34:1558:316#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:5:82:902:561#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:49:1208:1985#0 1 1 76 53473 53548 [TGAGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAG] HWI-EAS406:7:55:1403:804#0 1 1 76 53473 53548 [AGAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT] HWI-EAS406:6:67:1271:1581#0 1 1 76 53475 53550 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:26:1342:1423#0 1 1 76 53476 53551 [GAAACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATC] HWI-EAS406:5:59:1679:1352#0 1 1 76 53476 53551 [AACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTT] HWI-EAS406:6:40:298:405#0 1 1 76 53478 53553 [ACTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTG] HWI-EAS406:7:40:1275:154#0 1 1 76 53479 53554 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:5:51:215:588#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:49:1215:1249#0 1 1 76 53480 53555 [CTAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGG] HWI-EAS406:6:54:1111:713#0 1 1 76 53480 53555 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:5:58:471:1142#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:6:46:872:636#0 1 1 76 53481 53556 [TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGA] HWI-EAS406:7:81:125:1639#0 1 1 76 53481 53556 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:6:64:68:1338#0 1 1 76 53483 53558 [GGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGA] HWI-EAS406:7:32:494:1816#0 1 1 76 53483 53558 [GAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGA] HWI-EAS406:7:37:986:1763#0 1 1 76 53486 53561 [AAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGAT] HWI-EAS406:6:60:434:400#0 1 1 76 53487 53562 [AGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATA] HWI-EAS406:7:72:380:1488#0 1 1 76 53488 53563 [GGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGT] HWI-EAS406:7:77:730:1986#0 1 1 76 53490 53565 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:38:1359:674#0 1 1 76 53491 53566 [GGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTG] HWI-EAS406:5:40:121:754#0 1 1 76 53491 53566 [GCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAG] HWI-EAS406:6:56:1672:1286#0 1 1 76 53495 53570 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:27:541:285#0 1 1 76 53497 53572 [CATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCC] HWI-EAS406:6:67:1267:726#0 1 1 76 53497 53572 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:58:1582:877#0 1 1 76 53498 53573 [ATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCA] HWI-EAS406:5:99:799:1909#0 1 1 76 53498 53573 [TCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAA] HWI-EAS406:5:34:903:1119#0 1 1 76 53499 53574 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:5:47:976:760#0 1 1 76 53500 53575 [CAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAA] HWI-EAS406:6:100:1728:1491#0 1 1 76 53500 53575 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:46:1677:934#0 1 1 76 53501 53576 [AACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAG] HWI-EAS406:7:65:1706:1307#0 1 1 76 53501 53576 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:5:40:1473:1219#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:25:1767:760#0 1 1 76 53502 53577 [ACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGG] HWI-EAS406:6:76:655:1635#0 1 1 76 53502 53577 [ATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTA] HWI-EAS406:5:82:1406:593#0 1 1 76 53504 53579 [AGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAA] HWI-EAS406:5:45:1177:936#0 1 1 76 53506 53581 [GATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAG] HWI-EAS406:6:99:1613:1584#0 1 1 76 53507 53582 [ATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGG] HWI-EAS406:5:60:546:1031#0 1 1 76 53508 53583 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:5:28:1177:1079#0 1 1 76 53510 53585 [GATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAA] HWI-EAS406:6:89:545:1190#0 1 1 76 53510 53585 [ATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAA] HWI-EAS406:5:46:927:1690#0 1 1 76 53511 53586 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:39:1424:980#0 1 1 76 53513 53588 [GAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGG] HWI-EAS406:7:48:1636:1321#0 1 1 76 53513 53588 [AAGTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGT] HWI-EAS406:7:72:421:1226#0 1 1 76 53514 53589 [GTGGTGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTG] HWI-EAS406:6:76:763:468#0 1 1 76 53516 53591 [TGATTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGA] HWI-EAS406:6:28:363:848#0 1 1 76 53520 53595 [TTGTTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGA] HWI-EAS406:6:50:1325:1030#0 1 1 76 53523 53598 [TTGATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAA] HWI-EAS406:5:60:752:516#0 1 1 76 53526 53601 [ATGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAA] HWI-EAS406:7:57:1111:208#0 1 1 76 53529 53604 [TGAGAAGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAG] HWI-EAS406:7:58:1186:1368#0 1 1 76 53530 53605 [AGATCAATGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGT] HWI-EAS406:6:38:1203:1137#0 1 1 76 53535 53610 [TGACGAGATCTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGAT] HWI-EAS406:7:60:1055:895#0 1 1 76 53542 53617 [GTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAA] HWI-EAS406:5:37:314:959#0 1 1 76 53564 53639 [GTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTT] HWI-EAS406:6:58:1584:1523#0 1 1 76 53577 53652 [AAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCT] HWI-EAS406:7:56:1128:796#0 1 1 76 53584 53659 [TTGGGGAAGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCC] HWI-EAS406:5:78:1362:1957#0 1 1 76 53589 53664 [AGAGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAA] HWI-EAS406:7:26:1321:1340#0 1 1 76 53596 53671 [AGAAGAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACC] HWI-EAS406:6:59:1045:1465#0 1 1 76 53598 53673 [GAAGACAGTAAAGGATGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAA] HWI-EAS406:6:59:1115:1324#0 1 1 76 53602 53677 [TGGTGAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGT] HWI-EAS406:5:44:1561:461#0 1 1 76 53617 53692 [GTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCA] HWI-EAS406:7:7:1186:571#0 1 1 76 53624 53699 [TTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAA] HWI-EAS406:7:61:615:1410#0 1 1 76 53625 53700 [CTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCA] HWI-EAS406:7:32:1742:1156#0 1 1 76 53631 53706 [TCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAG] HWI-EAS406:7:57:904:1288#0 1 1 76 53632 53707 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:57:977:906#0 1 1 76 53633 53708 [CCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGC] HWI-EAS406:7:88:469:1148#0 1 1 76 53633 53708 [AGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTG] HWI-EAS406:5:51:343:874#0 1 1 76 53635 53710 [CAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCT] HWI-EAS406:6:44:408:1803#0 1 1 76 53637 53712 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:62:1018:1623#0 1 1 76 53638 53713 [AAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTA] HWI-EAS406:5:96:568:2003#0 1 1 76 53638 53713 [TGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAG] HWI-EAS406:7:49:1058:1502#0 1 1 76 53641 53716 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:6:10:647:218#0 1 1 76 53644 53719 [AAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAG] HWI-EAS406:7:93:191:976#0 1 1 76 53644 53719 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:5:24:806:1332#0 1 1 76 53645 53720 [AGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGT] HWI-EAS406:7:15:333:1636#0 1 1 76 53645 53720 [GTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTA] HWI-EAS406:5:57:1370:747#0 1 1 76 53646 53721 [TCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACA] HWI-EAS406:5:47:743:680#0 1 1 76 53648 53723 [TTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGC] HWI-EAS406:5:67:696:746#0 1 1 76 53652 53727 [TGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCT] HWI-EAS406:7:18:266:1402#0 1 1 76 53653 53728 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:5:51:775:1299#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:6:32:153:1345#0 1 1 76 53654 53729 [GTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTC] HWI-EAS406:7:49:1150:1267#0 1 1 76 53654 53729 [TCCTCTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTG] HWI-EAS406:6:64:1753:1014#0 1 1 76 53656 53731 [CTTCCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTG] HWI-EAS406:6:17:1691:707#0 1 1 76 53660 53735 [CCTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGA] HWI-EAS406:6:79:633:863#0 1 1 76 53663 53738 [CTTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAA] HWI-EAS406:5:34:1333:412#0 1 1 76 53664 53739 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:5:15:969:1042#0 1 1 76 53665 53740 [TTATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAG] HWI-EAS406:7:97:1167:280#0 1 1 76 53665 53740 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:36:518:679#0 1 1 76 53666 53741 [TATGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGC] HWI-EAS406:6:54:1741:1277#0 1 1 76 53666 53741 [TGAACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAA] HWI-EAS406:7:81:166:408#0 1 1 76 53668 53743 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:49:1567:1190#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:6:63:726:607#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:45:510:1638#0 1 1 76 53670 53745 [AACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAAT] HWI-EAS406:7:98:1520:1892#0 1 1 76 53670 53745 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:6:32:504:1203#0 1 1 76 53671 53746 [ACCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATG] HWI-EAS406:7:19:498:1997#0 1 1 76 53671 53746 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:61:1174:249#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:5:76:612:158#0 1 1 76 53672 53747 [CCCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGA] HWI-EAS406:7:4:1433:1399#0 1 1 76 53672 53747 [CCAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAG] HWI-EAS406:7:80:183:999#0 1 1 76 53673 53748 [CAAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGT] HWI-EAS406:6:32:1074:1880#0 1 1 76 53674 53749 [AAACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTG] HWI-EAS406:5:4:486:796#0 1 1 76 53675 53750 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:5:63:1031:1371#0 1 1 76 53676 53751 [AACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGA] HWI-EAS406:6:23:1233:1354#0 1 1 76 53676 53751 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:5:24:218:423#0 1 1 76 53677 53752 [ACTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAA] HWI-EAS406:7:78:154:1954#0 1 1 76 53677 53752 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:5:53:918:295#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:6:66:225:1404#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:32:1665:1736#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:62:115:769#0 1 1 76 53678 53753 [CTTCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAG] HWI-EAS406:7:71:782:789#0 1 1 76 53678 53753 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:5:5:1378:1611#0 1 1 76 53680 53755 [TCCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCT] HWI-EAS406:7:10:256:644#0 1 1 76 53680 53755 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:27:114:140#0 1 1 76 53681 53756 [CCATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTC] HWI-EAS406:6:65:176:624#0 1 1 76 53681 53756 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:46:949:1239#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:60:668:521#0 1 1 76 53682 53757 [CATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCA] HWI-EAS406:6:64:755:266#0 1 1 76 53682 53757 [ATTCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAG] HWI-EAS406:6:26:366:1585#0 1 1 76 53683 53758 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:1:1496:199#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:6:65:902:1012#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:62:339:319#0 1 1 76 53685 53760 [TCCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT] HWI-EAS406:7:91:1443:1906#0 1 1 76 53685 53760 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:5:50:1573:914#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:16:1511:680#0 1 1 76 53686 53761 [CCCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTT] HWI-EAS406:6:31:178:391#0 1 1 76 53686 53761 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:5:34:406:871#0 1 1 76 53687 53762 [CCTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTG] HWI-EAS406:6:79:753:185#0 1 1 76 53687 53762 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:5:5:1322:609#0 1 1 76 53688 53763 [CTGGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGC] HWI-EAS406:7:64:1248:1852#0 1 1 76 53688 53763 [GGTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAA] HWI-EAS406:5:54:375:1950#0 1 1 76 53690 53765 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:5:57:1380:1653#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:56:338:1451#0 1 1 76 53692 53767 [TAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATG] HWI-EAS406:6:91:732:153#0 1 1 76 53692 53767 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:30:214:1194#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:5:74:1142:986#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:38:1357:1075#0 1 1 76 53693 53768 [AGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGC] HWI-EAS406:6:44:1020:1099#0 1 1 76 53693 53768 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:52:251:1614#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:6:86:1056:870#0 1 1 76 53694 53769 [GATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCC] HWI-EAS406:7:66:619:1649#0 1 1 76 53694 53769 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:72:758:676#0 1 1 76 53695 53770 [ATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCC] HWI-EAS406:7:74:752:1474#0 1 1 76 53695 53770 [TTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCA] HWI-EAS406:6:22:502:1518#0 1 1 76 53696 53771 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:31:1307:1856#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1567:1793#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:6:38:1568:1795#0 1 1 76 53697 53772 [TCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCAT] HWI-EAS406:7:44:828:1712#0 1 1 76 53697 53772 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:6:43:697:1975#0 1 1 76 53698 53773 [CAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATC] HWI-EAS406:7:37:1626:1745#0 1 1 76 53698 53773 [AAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCA] HWI-EAS406:6:70:1399:930#0 1 1 76 53699 53774 [AGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCAT] HWI-EAS406:5:62:689:1420#0 1 1 76 53700 53775 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:22:290:747#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:6:62:1222:999#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:34:460:1182#0 1 1 76 53702 53777 [AAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCG] HWI-EAS406:7:60:1445:1659#0 1 1 76 53702 53777 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:5:23:816:1245#0 1 1 76 53703 53778 [AGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGA] HWI-EAS406:7:98:652:1996#0 1 1 76 53703 53778 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:6:36:567:1926#0 1 1 76 53704 53779 [GCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGAT] HWI-EAS406:7:75:667:566#0 1 1 76 53704 53779 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:21:1467:217#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:5:46:494:1335#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:6:44:574:183#0 1 1 76 53705 53780 [CAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATG] HWI-EAS406:7:85:784:1509#0 1 1 76 53705 53780 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:45:1699:1798#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:5:61:259:848#0 1 1 76 53707 53782 [GCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCT] HWI-EAS406:7:82:1487:989#0 1 1 76 53707 53782 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:44:799:1472#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:5:96:1345:1148#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:2:556:1588#0 1 1 76 53708 53783 [CTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTT] HWI-EAS406:6:40:1121:575#0 1 1 76 53708 53783 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:5:80:187:1669#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:6:42:995:1699#0 1 1 76 53709 53784 [TGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTT] HWI-EAS406:7:1:1151:1039#0 1 1 76 53709 53784 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:6:20:1380:749#0 1 1 76 53710 53785 [GCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTC] HWI-EAS406:7:68:1531:2000#0 1 1 76 53710 53785 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:6:172:756#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:83:1402:1552#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:6:97:211:1856#0 1 1 76 53711 53786 [CTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCA] HWI-EAS406:7:34:732:1499#0 1 1 76 53711 53786 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:31:1051:1941#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:5:72:16:734#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:6:18:1773:1683#0 1 1 76 53712 53787 [TAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCAT] HWI-EAS406:7:62:201:660#0 1 1 76 53712 53787 [AGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATG] HWI-EAS406:6:38:1593:715#0 1 1 76 53713 53788 [GAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGT] HWI-EAS406:7:82:498:1137#0 1 1 76 53714 53789 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:6:16:786:304#0 1 1 76 53715 53790 [AGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTT] HWI-EAS406:7:62:987:306#0 1 1 76 53715 53790 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:6:39:548:1099#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:1:1505:1228#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:96:854:764#0 1 1 76 53716 53791 [GAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTG] HWI-EAS406:7:98:1214:1724#0 1 1 76 53716 53791 [AAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGA] HWI-EAS406:7:51:262:874#0 1 1 76 53717 53792 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:4:1419:1401#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:5:76:1374:135#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:6:56:234:1355#0 1 1 76 53718 53793 [AGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGAT] HWI-EAS406:7:99:1407:1195#0 1 1 76 53718 53793 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:5:63:1022:1714#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:22:1111:1486#0 1 1 76 53721 53796 [ACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCC] HWI-EAS406:6:23:1173:1393#0 1 1 76 53721 53796 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:8:1504:449#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:23:1015:1090#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:80:295:924#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:6:86:1016:1150#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:18:286:633#0 1 1 76 53722 53797 [CAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCT] HWI-EAS406:7:52:551:770#0 1 1 76 53722 53797 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:5:92:222:1504#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:41:1220:1625#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:6:64:1773:1523#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:41:178:512#0 1 1 76 53723 53798 [AAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTC] HWI-EAS406:7:57:1245:950#0 1 1 76 53723 53798 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:13:1239:1827#0 1 1 76 53724 53799 [AGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCA] HWI-EAS406:6:50:1129:1025#0 1 1 76 53724 53799 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:58:544:1826#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:6:76:1770:835#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:2:1239:530#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:49:1558:1668#0 1 1 76 53726 53801 [GCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAAT] HWI-EAS406:7:76:1322:2034#0 1 1 76 53726 53801 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:13:1139:793#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:25:1401:279#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:43:611:94#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:5:59:320:1125#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:36:1288:532#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:57:120:1826#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:6:93:937:626#0 1 1 76 53727 53802 [CTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATA] HWI-EAS406:7:34:854:831#0 1 1 76 53727 53802 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:5:24:350:1606#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:6:29:1254:1093#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:34:439:850#0 1 1 76 53728 53803 [TCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATAC] HWI-EAS406:7:66:98:814#0 1 1 76 53728 53803 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:5:23:48:2016#0 1 1 76 53729 53804 [CTGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACA] HWI-EAS406:6:87:506:1983#0 1 1 76 53729 53804 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:41:1175:1092#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:5:79:488:597#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:6:47:1352:1849#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:32:287:1824#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:46:103:1917#0 1 1 76 53730 53805 [TGTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAA] HWI-EAS406:7:75:1152:938#0 1 1 76 53730 53805 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:26:1440:278#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:28:373:1728#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:5:69:96:355#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:6:23:600:781#0 1 1 76 53731 53806 [GTTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAAC] HWI-EAS406:7:32:1118:1144#0 1 1 76 53731 53806 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:1:841:1431#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:37:1200:270#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:5:68:506:1220#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:25:945:552#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:6:61:1483:374#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:65:1250:212#0 1 1 76 53732 53807 [TTTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACA] HWI-EAS406:7:94:1427:1380#0 1 1 76 53732 53807 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:5:25:264:1466#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:6:84:595:1097#0 1 1 76 53733 53808 [TTGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAA] HWI-EAS406:7:57:1363:1464#0 1 1 76 53733 53808 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:17:785:1676#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:79:760:1454#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:5:85:1239:1869#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:65:31:1244#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:6:99:858:1834#0 1 1 76 53734 53809 [TGAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAAT] HWI-EAS406:7:87:1110:181#0 1 1 76 53734 53809 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:5:39:824:753#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:6:95:1374:274#0 1 1 76 53735 53810 [GAGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATT] HWI-EAS406:7:98:1702:780#0 1 1 76 53735 53810 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:5:8:1037:1569#0 1 1 76 53736 53811 [AGAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTT] HWI-EAS406:6:46:1413:1388#0 1 1 76 53736 53811 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:23:1734:1243#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:41:1134:841#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:5:97:878:1045#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:6:52:408:1247#0 1 1 76 53737 53812 [GAAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTC] HWI-EAS406:7:24:891:1738#0 1 1 76 53737 53812 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:5:72:815:1360#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:6:2:1349:1131#0 1 1 76 53738 53813 [AAGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCC] HWI-EAS406:7:100:1432:1673#0 1 1 76 53738 53813 [AGCAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCT] HWI-EAS406:7:99:663:941#0 1 1 76 53739 53814 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:33:969:1266#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:5:56:1399:1209#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:1:570:1171#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:20:538:1974#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:36:1481:568#0 1 1 76 53741 53816 [CAAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGA] HWI-EAS406:6:70:460:922#0 1 1 76 53741 53816 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:5:53:674:1771#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:41:1313:937#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:6:63:250:1453#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:3:584:2021#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:56:1367:1533#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:72:1445:1348#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:76:1312:1734#0 1 1 76 53742 53817 [AAATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAA] HWI-EAS406:7:95:1543:1168#0 1 1 76 53742 53817 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:60:1107:1118#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:64:81:1379#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:5:68:1426:356#0 1 1 76 53743 53818 [AATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAA] HWI-EAS406:7:42:569:1573#0 1 1 76 53743 53818 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:5:53:1583:925#0 1 1 76 53744 53819 [ATGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAG] HWI-EAS406:6:53:1027:1510#0 1 1 76 53744 53819 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:5:72:1317:148#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:6:261:208#0 1 1 76 53745 53820 [TGAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGA] HWI-EAS406:6:43:1038:1753#0 1 1 76 53745 53820 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:27:600:1166#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:5:75:1673:1588#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:6:32:1188:1603#0 1 1 76 53746 53821 [GAGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGAT] HWI-EAS406:7:28:1234:1172#0 1 1 76 53746 53821 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:28:294:470#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:5:32:1732:1461#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:67:1690:1587#0 1 1 76 53747 53822 [AGTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATG] HWI-EAS406:6:98:1438:220#0 1 1 76 53747 53822 [GTGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGT] HWI-EAS406:6:81:1704:1251#0 1 1 76 53748 53823 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:5:66:939:722#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:5:940:714#0 1 1 76 53749 53824 [TGAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTT] HWI-EAS406:6:74:245:845#0 1 1 76 53749 53824 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:16:1751:1337#0 1 1 76 53750 53825 [GAAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTG] HWI-EAS406:5:92:1250:1878#0 1 1 76 53750 53825 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:5:7:150:937#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:6:45:698:675#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:56:106:152#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:92:53:1655#0 1 1 76 53751 53826 [AAGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGT] HWI-EAS406:7:93:900:1917#0 1 1 76 53751 53826 [AGCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTA] HWI-EAS406:7:82:1176:398#0 1 1 76 53752 53827 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:7:230:370#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:5:63:1577:1760#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:61:1184:1226#0 1 1 76 53753 53828 [GCTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAG] HWI-EAS406:7:85:690:1531#0 1 1 76 53753 53828 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:27:956:983#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:5:45:963:1325#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:6:35:380:1287#0 1 1 76 53754 53829 [CTCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGC] HWI-EAS406:7:54:1221:1597#0 1 1 76 53754 53829 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:5:58:1337:1843#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:45:1177:1809#0 1 1 76 53755 53830 [TCAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT] HWI-EAS406:7:100:568:843#0 1 1 76 53755 53830 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:31:349:1472#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:5:87:1211:787#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:13:777:1410#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:50:1751:1006#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:6:64:1425:835#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:73:1117:1512#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:79:473:1944#0 1 1 76 53756 53831 [CAGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTG] HWI-EAS406:7:92:617:442#0 1 1 76 53756 53831 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:5:55:535:693#0 1 1 76 53757 53832 [AGGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGC] HWI-EAS406:6:12:1010:1013#0 1 1 76 53757 53832 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:5:41:1064:662#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:36:964:919#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:6:75:617:687#0 1 1 76 53758 53833 [GGTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCA] HWI-EAS406:7:80:1003:1446#0 1 1 76 53758 53833 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:5:82:56:1669#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:6:68:1701:1310#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:11:1314:1766#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:41:1106:2023#0 1 1 76 53759 53834 [GTTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAA] HWI-EAS406:7:86:97:1248#0 1 1 76 53759 53834 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:8:590:1396#0 1 1 76 53760 53835 [TTGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAA] HWI-EAS406:6:57:494:1164#0 1 1 76 53760 53835 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:5:57:1162:1145#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:37:1396:1876#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:65:362:1148#0 1 1 76 53762 53837 [GCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGA] HWI-EAS406:7:73:759:1170#0 1 1 76 53762 53837 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:63:1627:1085#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:5:67:81:493#0 1 1 76 53763 53838 [CAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAA] HWI-EAS406:7:76:1055:1562#0 1 1 76 53763 53838 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:5:75:1787:1708#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:30:698:510#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:32:1554:1024#0 1 1 76 53764 53839 [AATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAG] HWI-EAS406:6:74:1226:1465#0 1 1 76 53764 53839 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:7:784:1208#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:9:1546:1495#0 1 1 76 53765 53840 [ATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGA] HWI-EAS406:6:50:1176:969#0 1 1 76 53765 53840 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:1:1384:988#0 1 1 76 53766 53841 [TGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAA] HWI-EAS406:6:20:1449:626#0 1 1 76 53766 53841 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:65:1660:1360#0 1 1 76 53767 53842 [GCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAG] HWI-EAS406:5:90:1094:640#0 1 1 76 53767 53842 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:5:64:410:1688#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:6:26:1655:589#0 1 1 76 53768 53843 [CCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGG] HWI-EAS406:7:15:249:260#0 1 1 76 53768 53843 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:5:62:793:1138#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:52:1345:1732#0 1 1 76 53769 53844 [CCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGA] HWI-EAS406:7:66:886:2012#0 1 1 76 53769 53844 [CATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAG] HWI-EAS406:5:29:1101:1077#0 1 1 76 53770 53845 [ATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGA] HWI-EAS406:7:33:1565:1058#0 1 1 76 53771 53846 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:2:1040:467#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:6:36:215:9#0 1 1 76 53772 53847 [TCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGAT] HWI-EAS406:7:28:569:749#0 1 1 76 53772 53847 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:5:18:973:721#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:11:509:961#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:6:14:970:1656#0 1 1 76 53774 53849 [ATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGG] HWI-EAS406:7:82:1505:741#0 1 1 76 53774 53849 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:6:57:73:1057#0 1 1 76 53775 53850 [TCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGA] HWI-EAS406:7:36:1184:1732#0 1 1 76 53775 53850 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:25:1080:188#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:64:1369:1981#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:5:69:479:1105#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:6:54:572:549#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1231:1579#0 1 1 76 53776 53851 [CGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAA] HWI-EAS406:7:97:1232:1581#0 1 1 76 53776 53851 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:57:1570:888#0 1 1 76 53777 53852 [GATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAG] HWI-EAS406:6:74:854:1005#0 1 1 76 53777 53852 [ATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGG] HWI-EAS406:7:34:1270:343#0 1 1 76 53778 53853 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:6:56:668:1304#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:7:856:1930#0 1 1 76 53780 53855 [GCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCA] HWI-EAS406:7:45:888:1476#0 1 1 76 53780 53855 [CTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCAT] HWI-EAS406:6:42:851:734#0 1 1 76 53781 53856 [TTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATG] HWI-EAS406:5:3:257:2029#0 1 1 76 53782 53857 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:5:61:413:819#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:54:1631:1840#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:6:71:1463:1169#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:60:288:561#0 1 1 76 53784 53859 [TCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGAT] HWI-EAS406:7:94:426:1935#0 1 1 76 53784 53859 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:5:19:1741:929#0 1 1 76 53785 53860 [CATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATG] HWI-EAS406:6:38:416:1575#0 1 1 76 53785 53860 [ATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGA] HWI-EAS406:6:53:405:1635#0 1 1 76 53786 53861 [TGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGAT] HWI-EAS406:5:22:210:1199#0 1 1 76 53787 53862 [GTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATT] HWI-EAS406:6:32:1464:1827#0 1 1 76 53788 53863 [TGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCT] HWI-EAS406:6:42:812:1517#0 1 1 76 53790 53865 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:56:536:422#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:5:63:1786:1961#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:6:23:416:682#0 1 1 76 53797 53872 [TCAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCAT] HWI-EAS406:7:3:459:561#0 1 1 76 53797 53872 [CAATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATG] HWI-EAS406:6:96:1108:351#0 1 1 76 53798 53873 [AATACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGA] HWI-EAS406:5:12:1631:691#0 1 1 76 53799 53874 [TACAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGT] HWI-EAS406:5:6:1567:1249#0 1 1 76 53801 53876 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:27:1287:974#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:37:1042:502#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:59:719:958#0 1 1 76 53803 53878 [CAACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGC] HWI-EAS406:5:66:739:603#0 1 1 76 53803 53878 [AACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCA] HWI-EAS406:7:60:332:120#0 1 1 76 53804 53879 [ACAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAA] HWI-EAS406:6:80:1253:591#0 1 1 76 53805 53880 [CAATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAAT] HWI-EAS406:5:21:737:693#0 1 1 76 53806 53881 [AATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATG] HWI-EAS406:7:22:637:138#0 1 1 76 53807 53882 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:6:63:1509:846#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:2:1085:1217#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:57:1366:484#0 1 1 76 53808 53883 [ATTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGC] HWI-EAS406:7:72:146:631#0 1 1 76 53808 53883 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:5:84:1120:1798#0 1 1 76 53809 53884 [TTTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCC] HWI-EAS406:7:100:1230:665#0 1 1 76 53809 53884 [TTCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCA] HWI-EAS406:5:44:828:1385#0 1 1 76 53810 53885 [TCCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCAT] HWI-EAS406:6:30:371:1827#0 1 1 76 53811 53886 [CCTGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATC] HWI-EAS406:6:22:246:261#0 1 1 76 53812 53887 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:62:214:1434#0 1 1 76 53814 53889 [TGAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCAT] HWI-EAS406:7:99:593:171#0 1 1 76 53814 53889 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:5:43:1427:1753#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:6:15:1088:326#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:16:616:1762#0 1 1 76 53815 53890 [GAAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATC] HWI-EAS406:7:22:193:2002#0 1 1 76 53815 53890 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:5:19:257:841#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:6:22:840:86#0 1 1 76 53816 53891 [AAAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCC] HWI-EAS406:7:46:1792:706#0 1 1 76 53816 53891 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:6:29:1368:1637#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:54:1378:1220#0 1 1 76 53817 53892 [AAGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCA] HWI-EAS406:7:72:1195:1707#0 1 1 76 53817 53892 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:6:29:705:301#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:51:1007:1854#0 1 1 76 53818 53893 [AGATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAG] HWI-EAS406:7:71:1350:990#0 1 1 76 53818 53893 [GATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGA] HWI-EAS406:5:24:253:1153#0 1 1 76 53819 53894 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:23:1411:1888#0 1 1 76 53820 53895 [ATGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAG] HWI-EAS406:7:64:723:1674#0 1 1 76 53820 53895 [TGTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGG] HWI-EAS406:7:2:673:1691#0 1 1 76 53821 53896 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:5:76:1155:837#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:6:94:469:788#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:37:643:1364#0 1 1 76 53822 53897 [GTTGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGC] HWI-EAS406:7:53:289:1408#0 1 1 76 53822 53897 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:6:45:1044:1420#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:40:710:746#0 1 1 76 53824 53899 [TGTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTT] HWI-EAS406:7:100:490:1435#0 1 1 76 53824 53899 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:5:13:1725:407#0 1 1 76 53825 53900 [GTAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG] HWI-EAS406:7:52:149:487#0 1 1 76 53825 53900 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:5:60:1672:59#0 1 1 76 53826 53901 [TAGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGA] HWI-EAS406:6:63:145:1161#0 1 1 76 53826 53901 [AGCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGAT] HWI-EAS406:6:18:478:238#0 1 1 76 53827 53902 [GCTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATG] HWI-EAS406:5:21:470:772#0 1 1 76 53828 53903 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:45:1121:616#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:62:1614:199#0 1 1 76 53829 53904 [CTGCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGT] HWI-EAS406:7:92:645:1588#0 1 1 76 53829 53904 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:31:952:221#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:5:63:1577:1631#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:68:1329:1923#0 1 1 76 53831 53906 [GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTC] HWI-EAS406:7:100:546:1586#0 1 1 76 53831 53906 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:43:1089:1589#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:5:99:778:1477#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:6:22:247:1686#0 1 1 76 53832 53907 [CAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCC] HWI-EAS406:7:71:167:549#0 1 1 76 53832 53907 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:5:14:1082:1432#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:6:8:1319:401#0 1 1 76 53833 53908 [AAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCA] HWI-EAS406:7:61:615:223#0 1 1 76 53833 53908 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:5:15:1128:400#0 1 1 76 53834 53909 [AAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAG] HWI-EAS406:6:64:715:621#0 1 1 76 53834 53909 [AGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGA] HWI-EAS406:7:3:437:1420#0 1 1 76 53835 53910 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:5:95:712:892#0 1 1 76 53836 53911 [GAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAG] HWI-EAS406:7:99:1012:428#0 1 1 76 53836 53911 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:6:79:160:1028#0 1 1 76 53837 53912 [AAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGA] HWI-EAS406:7:65:502:1307#0 1 1 76 53837 53912 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:5:23:87:1049#0 1 1 76 53838 53913 [AGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAA] HWI-EAS406:7:27:559:906#0 1 1 76 53838 53913 [GAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAA] HWI-EAS406:5:44:1725:701#0 1 1 76 53839 53914 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:6:26:652:624#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:23:313:1514#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:28:269:575#0 1 1 76 53840 53915 [AAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAAT] HWI-EAS406:7:42:1472:1659#0 1 1 76 53840 53915 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:5:61:1585:978#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:27:843:932#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:6:38:823:1504#0 1 1 76 53841 53916 [AGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATT] HWI-EAS406:7:67:242:1611#0 1 1 76 53841 53916 [GGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTA] HWI-EAS406:6:100:484:1453#0 1 1 76 53842 53917 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:21:1256:322#0 1 1 76 53843 53918 [GAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAG] HWI-EAS406:7:42:1590:1503#0 1 1 76 53843 53918 [AGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGA] HWI-EAS406:6:15:1098:1313#0 1 1 76 53844 53919 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:19:167:915#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:5:28:962:855#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:10:402:1387#0 1 1 76 53846 53921 [ATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGG] HWI-EAS406:6:22:507:446#0 1 1 76 53846 53921 [TGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGA] HWI-EAS406:7:79:69:1069#0 1 1 76 53847 53922 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:17:476:1819#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:59:1763:1643#0 1 1 76 53848 53923 [GGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGAT] HWI-EAS406:5:99:1068:1770#0 1 1 76 53848 53923 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:6:42:1573:1130#0 1 1 76 53849 53924 [GAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATC] HWI-EAS406:7:60:983:768#0 1 1 76 53849 53924 [AGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCA] HWI-EAS406:6:90:733:843#0 1 1 76 53851 53926 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:5:13:1589:766#0 1 1 76 53852 53927 [GGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAG] HWI-EAS406:6:88:744:2026#0 1 1 76 53852 53927 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:6:72:914:1448#0 1 1 76 53853 53928 [GCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGG] HWI-EAS406:7:32:122:1425#0 1 1 76 53853 53928 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:6:30:639:1010#0 1 1 76 53854 53929 [CATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGA] HWI-EAS406:7:85:958:1700#0 1 1 76 53854 53929 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:5:98:1773:1289#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:27:634:898#0 1 1 76 53856 53931 [TGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAG] HWI-EAS406:6:96:546:1947#0 1 1 76 53856 53931 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:5:88:652:1575#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:6:37:1580:1320#0 1 1 76 53861 53936 [ATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCA] HWI-EAS406:7:51:1088:1628#0 1 1 76 53861 53936 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:44:265:1232#0 1 1 76 53862 53937 [TTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCAC] HWI-EAS406:5:62:909:1646#0 1 1 76 53862 53937 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:6:69:851:1815#0 1 1 76 53863 53938 [TCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACA] HWI-EAS406:7:20:1140:1641#0 1 1 76 53863 53938 [CTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACAC] HWI-EAS406:5:59:925:1704#0 1 1 76 53864 53939 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:5:18:1269:245#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:6:64:121:1069#0 1 1 76 53865 53940 [TTACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACT] HWI-EAS406:7:91:277:970#0 1 1 76 53865 53940 [TACCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTA] HWI-EAS406:5:47:714:1498#0 1 1 76 53866 53941 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:5:13:1230:1478#0 1 1 76 53868 53943 [CCCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACC] HWI-EAS406:6:19:771:764#0 1 1 76 53868 53943 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:52:138:1695#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:6:66:1153:1644#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:34:85:723#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:39:45:1058#0 1 1 76 53869 53944 [CCATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCT] HWI-EAS406:7:43:1182:1989#0 1 1 76 53869 53944 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:6:57:137:1673#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:28:1513:1071#0 1 1 76 53870 53945 [CATGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTT] HWI-EAS406:7:45:837:1484#0 1 1 76 53870 53945 [TGAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGT] HWI-EAS406:7:94:1160:1729#0 1 1 76 53872 53947 [GAGTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTG] HWI-EAS406:6:99:704:55#0 1 1 76 53873 53948 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:6:1448:1278#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:5:10:451:1596#0 1 1 76 53875 53950 [GTGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCT] HWI-EAS406:6:5:671:1670#0 1 1 76 53875 53950 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:6:6:1434:396#0 1 1 76 53876 53951 [TGCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTC] HWI-EAS406:7:29:875:1895#0 1 1 76 53876 53951 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:11:1540:1268#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:5:57:413:1041#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:6:74:1277:1557#0 1 1 76 53877 53952 [GCAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCT] HWI-EAS406:7:53:362:1259#0 1 1 76 53877 53952 [CAATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTT] HWI-EAS406:5:72:857:1226#0 1 1 76 53878 53953 [AATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTG] HWI-EAS406:5:60:340:831#0 1 1 76 53879 53954 [ATGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGG] HWI-EAS406:7:90:1254:1384#0 1 1 76 53880 53955 [TGCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGA] HWI-EAS406:6:77:527:1198#0 1 1 76 53881 53956 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:6:80:854:939#0 1 1 76 53882 53957 [GCCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGAC] HWI-EAS406:7:60:1164:1144#0 1 1 76 53882 53957 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:25:1359:1399#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:76:172:769#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:6:96:618:1648#0 1 1 76 53883 53958 [CCATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACC] HWI-EAS406:7:59:1626:278#0 1 1 76 53883 53958 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:44:1270:2024#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:5:77:476:271#0 1 1 76 53884 53959 [CATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCT] HWI-EAS406:7:96:1622:1184#0 1 1 76 53884 53959 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:5:82:1188:1438#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:6:34:347:355#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:70:1117:1195#0 1 1 76 53885 53960 [ATCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTA] HWI-EAS406:7:75:1591:977#0 1 1 76 53885 53960 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:45:1223:507#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:5:67:287:642#0 1 1 76 53886 53961 [TCATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTAT] HWI-EAS406:6:53:1626:1349#0 1 1 76 53886 53961 [ATCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGG] HWI-EAS406:7:40:286:1590#0 1 1 76 53888 53963 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:5:6:780:1095#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:6:60:1547:993#0 1 1 76 53889 53964 [TCCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGT] HWI-EAS406:7:31:1086:1440#0 1 1 76 53889 53964 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:5:1:642:862#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:76:80:1186#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:6:99:491:978#0 1 1 76 53890 53965 [CCAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTA] HWI-EAS406:7:60:791:701#0 1 1 76 53890 53965 [CAGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTAT] HWI-EAS406:7:74:1435:300#0 1 1 76 53891 53966 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:38:821:581#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:5:79:1780:301#0 1 1 76 53892 53967 [AGAGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATT] HWI-EAS406:7:44:716:1690#0 1 1 76 53892 53967 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:5:91:190:349#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:6:25:917:360#0 1 1 76 53894 53969 [AGGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTG] HWI-EAS406:7:39:1580:1695#0 1 1 76 53894 53969 [GGCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA] HWI-EAS406:6:35:956:908#0 1 1 76 53895 53970 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:5:32:575:1795#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:6:32:600:1560#0 1 1 76 53896 53971 [GCTTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAG] HWI-EAS406:7:34:778:1836#0 1 1 76 53896 53971 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:29:896:170#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:37:639:1793#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:54:1271:294#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:5:57:1360:735#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:6:72:220:632#0 1 1 76 53898 53973 [TTGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAA] HWI-EAS406:7:22:1124:121#0 1 1 76 53898 53973 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:5:33:1187:1504#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:62:514:1656#0 1 1 76 53899 53974 [TGATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAA] HWI-EAS406:7:86:788:1355#0 1 1 76 53899 53974 [ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAG] HWI-EAS406:5:54:783:1748#0 1 1 76 53901 53976 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:21:317:1316#0 1 1 76 53902 53977 [TGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGT] HWI-EAS406:6:80:825:174#0 1 1 76 53902 53977 [GTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTC] HWI-EAS406:7:63:1279:329#0 1 1 76 53903 53978 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:5:80:1428:269#0 1 1 76 53904 53979 [TTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCT] HWI-EAS406:6:65:1244:1471#0 1 1 76 53904 53979 [TCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTC] HWI-EAS406:6:53:192:736#0 1 1 76 53905 53980 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:5:92:49:1461#0 1 1 76 53906 53981 [CCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCT] HWI-EAS406:7:54:281:668#0 1 1 76 53906 53981 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:17:1119:477#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:5:19:1478:1281#0 1 1 76 53907 53982 [CAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTG] HWI-EAS406:6:60:634:1666#0 1 1 76 53907 53982 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:14:1203:1035#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1420:1500#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:5:70:1422:1501#0 1 1 76 53908 53983 [AGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGC] HWI-EAS406:6:25:1163:723#0 1 1 76 53908 53983 [GAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCG] HWI-EAS406:6:98:883:1692#0 1 1 76 53909 53984 [AGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGA] HWI-EAS406:7:49:630:1898#0 1 1 76 53910 53985 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:40:1573:1541#0 1 1 76 53911 53986 [GAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGAT] HWI-EAS406:5:72:730:185#0 1 1 76 53911 53986 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:41:749:946#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:81:1134:1986#0 1 1 76 53912 53987 [AAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATT] HWI-EAS406:7:91:1360:1610#0 1 1 76 53912 53987 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:5:44:1317:939#0 1 1 76 53913 53988 [AATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTT] HWI-EAS406:6:12:98:266#0 1 1 76 53913 53988 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:5:19:421:380#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:70:1220:1053#0 1 1 76 53915 53990 [TTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGG] HWI-EAS406:7:98:834:906#0 1 1 76 53915 53990 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:5:93:115:709#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:26:728:691#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:61:455:1037#0 1 1 76 53916 53991 [TAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGG] HWI-EAS406:7:79:179:1965#0 1 1 76 53916 53991 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:8:727:453#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:64:879:634#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:6:80:1491:1809#0 1 1 76 53917 53992 [AGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGA] HWI-EAS406:7:52:178:742#0 1 1 76 53917 53992 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:5:41:1062:1929#0 1 1 76 53918 53993 [GAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAG] HWI-EAS406:6:31:1747:623#0 1 1 76 53918 53993 [AGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGC] HWI-EAS406:6:78:186:1663#0 1 1 76 53919 53994 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:20:440:744#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:57:1309:1980#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:5:58:664:1615#0 1 1 76 53920 53995 [GGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCT] HWI-EAS406:6:78:993:297#0 1 1 76 53920 53995 [GATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTA] HWI-EAS406:6:60:1220:1711#0 1 1 76 53921 53996 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:47:519:669#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:5:71:834:558#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:6:42:1752:501#0 1 1 76 53922 53997 [ATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAG] HWI-EAS406:7:92:1198:1990#0 1 1 76 53922 53997 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:5:71:1586:762#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:6:98:77:1185#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:56:381:873#0 1 1 76 53923 53998 [TCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGT] HWI-EAS406:7:84:723:1477#0 1 1 76 53923 53998 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:37:263:1790#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:5:42:132:1471#0 1 1 76 53924 53999 [CCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTG] HWI-EAS406:6:73:141:1610#0 1 1 76 53924 53999 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:88:569:1377#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:5:97:586:928#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:14:564:751#0 1 1 76 53925 54000 [CAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGT] HWI-EAS406:6:98:1335:438#0 1 1 76 53925 54000 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:5:72:1090:782#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:6:42:1711:392#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:3:1582:445#0 1 1 76 53926 54001 [AGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTC] HWI-EAS406:7:34:922:852#0 1 1 76 53926 54001 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:6:11:1488:353#0 1 1 76 53927 54002 [GGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCA] HWI-EAS406:7:68:172:914#0 1 1 76 53927 54002 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:5:38:475:1202#0 1 1 76 53928 54003 [GAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAG] HWI-EAS406:7:97:572:717#0 1 1 76 53928 54003 [AAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGC] HWI-EAS406:5:72:1652:1326#0 1 1 76 53929 54004 [GCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTT] HWI-EAS406:6:86:744:1804#0 1 1 76 53931 54006 [CTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTG] HWI-EAS406:7:92:1168:291#0 1 1 76 53932 54007 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:6:89:754:1507#0 1 1 76 53933 54008 [TTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGA] HWI-EAS406:7:48:639:610#0 1 1 76 53933 54008 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:25:1067:1627#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:5:82:372:919#0 1 1 76 53934 54009 [TCACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGAT] HWI-EAS406:6:27:428:893#0 1 1 76 53934 54009 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:6:1055:1189#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:5:94:235:1499#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:13:128:1692#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:6:99:198:1261#0 1 1 76 53935 54010 [CACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATG] HWI-EAS406:7:35:1019:1849#0 1 1 76 53935 54010 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:5:96:75:1459#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:12:613:2015#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:6:50:1410:1118#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:56:167:925#0 1 1 76 53936 54011 [ACACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGC] HWI-EAS406:7:91:1633:1695#0 1 1 76 53936 54011 [CACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCC] HWI-EAS406:6:20:1297:1560#0 1 1 76 53937 54012 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:47:1430:499#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:5:67:90:1899#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:52:1183:1187#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:57:146:1555#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:6:83:588:330#0 1 1 76 53938 54013 [ACTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCT] HWI-EAS406:7:17:987:818#0 1 1 76 53938 54013 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:6:70:588:639#0 1 1 76 53939 54014 [CTACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTT] HWI-EAS406:7:33:1112:1882#0 1 1 76 53939 54014 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:11:833:1953#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:61:976:940#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:6:89:403:309#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:44:1423:985#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:62:1723:212#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:65:390:1548#0 1 1 76 53940 54015 [TACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTT] HWI-EAS406:7:83:1477:427#0 1 1 76 53940 54015 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:6:6:58:608#0 1 1 76 53941 54016 [ACCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTG] HWI-EAS406:7:50:641:1459#0 1 1 76 53941 54016 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:6:82:542:1980#0 1 1 76 53942 54017 [CCTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGT] HWI-EAS406:7:34:1283:493#0 1 1 76 53942 54017 [CTTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTC] HWI-EAS406:5:81:225:724#0 1 1 76 53943 54018 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:3:717:1798#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:31:921:1750#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:5:42:150:711#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:4:434:33#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:56:416:1068#0 1 1 76 53944 54019 [TTGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCT] HWI-EAS406:6:99:54:1548#0 1 1 76 53944 54019 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:19:1381:347#0 1 1 76 53945 54020 [TGTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTG] HWI-EAS406:5:51:1338:736#0 1 1 76 53945 54020 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:5:75:621:276#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:10:1296:1244#0 1 1 76 53946 54021 [GTGCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGT] HWI-EAS406:6:71:1579:888#0 1 1 76 53946 54021 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:23:812:1012#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:78:102:1558#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:5:87:525:1809#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:31:471:759#0 1 1 76 53948 54023 [GCTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTG] HWI-EAS406:7:79:1344:2004#0 1 1 76 53948 54023 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:5:49:98:2023#0 1 1 76 53949 54024 [CTCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGC] HWI-EAS406:6:59:1152:522#0 1 1 76 53949 54024 [TCTTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCA] HWI-EAS406:7:49:1313:762#0 1 1 76 53950 54025 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:6:54:1459:1963#0 1 1 76 53952 54027 [TTGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAA] HWI-EAS406:7:11:1488:1455#0 1 1 76 53952 54027 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:6:36:677:155#0 1 1 76 53953 54028 [TGGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAG] HWI-EAS406:7:38:394:837#0 1 1 76 53953 54028 [GGACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGA] HWI-EAS406:5:59:1281:1521#0 1 1 76 53954 54029 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:5:53:897:165#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:30:553:918#0 1 1 76 53955 54030 [GACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAA] HWI-EAS406:6:54:1063:1707#0 1 1 76 53955 54030 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:5:83:390:1898#0 1 1 76 53956 54031 [ACCTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAG] HWI-EAS406:6:35:1663:440#0 1 1 76 53956 54031 [CTATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCT] HWI-EAS406:5:77:61:1345#0 1 1 76 53958 54033 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:52:441:826#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:55:1378:1320#0 1 1 76 53959 54034 [TATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTT] HWI-EAS406:6:91:648:2026#0 1 1 76 53959 54034 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:44:1324:176#0 1 1 76 53960 54035 [ATGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTG] HWI-EAS406:6:81:477:1340#0 1 1 76 53960 54035 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:43:553:1574#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:5:45:822:373#0 1 1 76 53961 54036 [TGGTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGG] HWI-EAS406:6:29:1105:782#0 1 1 76 53961 54036 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:40:723:1752#0 1 1 76 53963 54038 [GTATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGAT] HWI-EAS406:6:45:744:896#0 1 1 76 53963 54038 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:5:37:380:576#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:38:682:1903#0 1 1 76 53965 54040 [ATTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC] HWI-EAS406:7:83:1387:772#0 1 1 76 53965 54040 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:5:43:562:1255#0 1 1 76 53966 54041 [TTTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCA] HWI-EAS406:7:93:809:856#0 1 1 76 53966 54041 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:5:29:1156:1834#0 1 1 76 53967 54042 [TTGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCAC] HWI-EAS406:7:41:697:849#0 1 1 76 53967 54042 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:5:83:778:1358#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:20:906:418#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:6:50:1396:1687#0 1 1 76 53968 54043 [TGAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACT] HWI-EAS406:7:75:936:1547#0 1 1 76 53968 54043 [GAGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTC] HWI-EAS406:6:89:161:1255#0 1 1 76 53969 54044 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:5:57:482:1642#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:41:1677:1966#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:74:117:759#0 1 1 76 53970 54045 [AGAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCA] HWI-EAS406:6:75:432:1382#0 1 1 76 53970 54045 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:5:26:291:1912#0 1 1 76 53971 54046 [GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAG] HWI-EAS406:7:32:1615:1525#0 1 1 76 53971 54046 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:40:1352:1869#0 1 1 76 53972 54047 [AAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGT] HWI-EAS406:7:70:809:1723#0 1 1 76 53972 54047 [AAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTA] HWI-EAS406:5:3:949:714#0 1 1 76 53973 54048 [AGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACA] HWI-EAS406:7:9:312:19#0 1 1 76 53975 54050 [GTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAA] HWI-EAS406:6:9:1731:1120#0 1 1 76 53976 54051 [TCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAG] HWI-EAS406:6:1:547:479#0 1 1 76 53977 54052 [TCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAA] HWI-EAS406:7:99:61:1603#0 1 1 76 53979 54054 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:6:60:1243:1365#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:4:121:689#0 1 1 76 53980 54055 [CTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAG] HWI-EAS406:7:93:1081:97#0 1 1 76 53980 54055 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:5:26:1615:1713#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:41:1043:1255#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:6:72:103:1770#0 1 1 76 53981 54056 [TGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGT] HWI-EAS406:7:99:1349:604#0 1 1 76 53981 54056 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:6:97:767:1015#0 1 1 76 53982 54057 [GCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTG] HWI-EAS406:7:53:77:1051#0 1 1 76 53982 54057 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:5:62:1300:1371#0 1 1 76 53983 54058 [CGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGT] HWI-EAS406:6:55:1719:1387#0 1 1 76 53983 54058 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:5:5:288:1125#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:6:39:962:1973#0 1 1 76 53984 54059 [GATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTA] HWI-EAS406:7:54:273:2027#0 1 1 76 53984 54059 [TTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGA] HWI-EAS406:7:100:1344:902#0 1 1 76 53986 54061 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:14:663:1252#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:5:50:1119:948#0 1 1 76 53987 54062 [TTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGAC] HWI-EAS406:6:51:1647:1653#0 1 1 76 53987 54062 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:6:38:1233:1247#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:51:1241:662#0 1 1 76 53989 54064 [GGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTC] HWI-EAS406:7:76:446:1078#0 1 1 76 53989 54064 [GGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCT] HWI-EAS406:7:79:1686:963#0 1 1 76 53990 54065 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:49:1457:1100#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:5:68:171:1825#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:67:1555:2010#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:6:78:1460:1502#0 1 1 76 53991 54066 [GAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTC] HWI-EAS406:7:7:751:1141#0 1 1 76 53991 54066 [AGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCT] HWI-EAS406:5:75:1183:269#0 1 1 76 53992 54067 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:17:1630:1064#0 1 1 76 53993 54068 [GCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTC] HWI-EAS406:7:93:671:1034#0 1 1 76 53993 54068 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:6:43:1683:1051#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:62:1392:285#0 1 1 76 53994 54069 [CTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCT] HWI-EAS406:7:65:472:1193#0 1 1 76 53994 54069 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:30:1353:1081#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:5:68:299:782#0 1 1 76 53995 54070 [TAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTG] HWI-EAS406:6:58:300:1064#0 1 1 76 53995 54070 [AGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGG] HWI-EAS406:5:4:156:941#0 1 1 76 53996 54071 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:32:267:147#0 1 1 76 53997 54072 [GTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGT] HWI-EAS406:5:38:1541:1446#0 1 1 76 53997 54072 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:5:20:720:1400#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:6:35:677:1778#0 1 1 76 53998 54073 [TGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTG] HWI-EAS406:7:90:983:632#0 1 1 76 53998 54073 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:5:63:928:1410#0 1 1 76 54000 54075 [TCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTT] HWI-EAS406:6:10:305:1638#0 1 1 76 54000 54075 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:55:859:984#0 1 1 76 54002 54077 [AGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAG] HWI-EAS406:7:94:749:1858#0 1 1 76 54002 54077 [GCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGC] HWI-EAS406:5:37:1539:1116#0 1 1 76 54003 54078 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:16:1287:1466#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:48:1089:706#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:5:54:177:1301#0 1 1 76 54005 54080 [TTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTG] HWI-EAS406:6:38:1374:1426#0 1 1 76 54005 54080 [TGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGA] HWI-EAS406:7:6:1282:521#0 1 1 76 54006 54081 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:6:2:433:1863#0 1 1 76 54007 54082 [GATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGAT] HWI-EAS406:7:7:1105:730#0 1 1 76 54007 54082 [ATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATC] HWI-EAS406:6:70:480:304#0 1 1 76 54008 54083 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:38:94:1030#0 1 1 76 54009 54084 [TGCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCG] HWI-EAS406:7:65:1234:1621#0 1 1 76 54009 54084 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:5:28:1247:1588#0 1 1 76 54010 54085 [GCCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGT] HWI-EAS406:6:53:1468:1857#0 1 1 76 54010 54085 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:31:1752:791#0 1 1 76 54011 54086 [CCTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTT] HWI-EAS406:6:41:1143:1859#0 1 1 76 54011 54086 [CTTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTC] HWI-EAS406:6:35:1486:1808#0 1 1 76 54012 54087 [TTTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCA] HWI-EAS406:5:37:281:275#0 1 1 76 54013 54088 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:35:1411:1805#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:5:75:1704:1134#0 1 1 76 54014 54089 [TTGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAG] HWI-EAS406:6:79:577:1487#0 1 1 76 54014 54089 [TGTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGT] HWI-EAS406:5:46:1694:1456#0 1 1 76 54015 54090 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:6:41:1700:2005#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:47:370:1388#0 1 1 76 54016 54091 [GTCTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTG] HWI-EAS406:7:68:53:843#0 1 1 76 54016 54091 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:5:25:1521:1357#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:6:69:1289:763#0 1 1 76 54018 54093 [CTGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAA] HWI-EAS406:7:73:484:1824#0 1 1 76 54018 54093 [TGTTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAG] HWI-EAS406:5:35:539:902#0 1 1 76 54019 54094 [TTGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTA] HWI-EAS406:7:49:1156:238#0 1 1 76 54021 54096 [TGCAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTAC] HWI-EAS406:5:70:1312:1703#0 1 1 76 54022 54097 [CAAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCC] HWI-EAS406:5:30:1054:1157#0 1 1 76 54024 54099 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:5:29:1569:363#0 1 1 76 54025 54100 [AAAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCT] HWI-EAS406:7:54:1658:1211#0 1 1 76 54025 54100 [AAGAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTG] HWI-EAS406:7:57:459:506#0 1 1 76 54026 54101 [GAAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTG] HWI-EAS406:6:65:1675:1051#0 1 1 76 54028 54103 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:5:8:1221:662#0 1 1 76 54029 54104 [AAGCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGG] HWI-EAS406:7:59:1524:1978#0 1 1 76 54029 54104 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:60:1591:1383#0 1 1 76 54031 54106 [GCTTGGATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGC] HWI-EAS406:7:61:662:313#0 1 1 76 54031 54106 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:28:1721:526#0 1 1 76 54036 54111 [GATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTT] HWI-EAS406:5:79:947:2033#0 1 1 76 54036 54111 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:6:46:1601:1005#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:51:154:262#0 1 1 76 54037 54112 [ATTCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTA] HWI-EAS406:7:79:1464:344#0 1 1 76 54037 54112 [TCACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGA] HWI-EAS406:7:82:855:1925#0 1 1 76 54039 54114 [CACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAG] HWI-EAS406:7:3:1094:1673#0 1 1 76 54040 54115 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:5:12:1619:1515#0 1 1 76 54041 54116 [ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGG] HWI-EAS406:6:65:331:1333#0 1 1 76 54041 54116 [CTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGA] HWI-EAS406:5:62:192:1866#0 1 1 76 54042 54117 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:3:1065:1215#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:5:15:1564:1353#0 1 1 76 54044 54119 [CAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACC] HWI-EAS406:7:42:666:1287#0 1 1 76 54044 54119 [AGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCT] HWI-EAS406:6:50:757:1696#0 1 1 76 54045 54120 [GTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTC] HWI-EAS406:6:58:1422:1798#0 1 1 76 54046 54121 [ACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCC] HWI-EAS406:5:65:798:193#0 1 1 76 54048 54123 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:53:603:1620#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:6:64:1755:1587#0 1 1 76 54050 54125 [AAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTG] HWI-EAS406:7:57:866:497#0 1 1 76 54050 54125 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:5:68:897:1716#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:27:1416:776#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:45:1583:1140#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:6:50:873:1753#0 1 1 76 54051 54126 [AGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGT] HWI-EAS406:7:41:62:1152#0 1 1 76 54051 54126 [GAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTG] HWI-EAS406:6:39:1044:1768#0 1 1 76 54052 54127 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:5:8:722:814#0 1 1 76 54053 54128 [AAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGA] HWI-EAS406:7:42:1413:1613#0 1 1 76 54053 54128 [AGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAA] HWI-EAS406:5:83:1427:841#0 1 1 76 54054 54129 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:6:3:323:1911#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:50:1535:1600#0 1 1 76 54055 54130 [GTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAG] HWI-EAS406:7:77:63:1840#0 1 1 76 54055 54130 [GTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGAT] HWI-EAS406:6:73:792:159#0 1 1 76 54057 54132 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:6:52:215:151#0 1 1 76 54058 54133 [TAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATT] HWI-EAS406:7:57:1335:1367#0 1 1 76 54058 54133 [AGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTG] HWI-EAS406:7:99:1532:1321#0 1 1 76 54059 54134 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:5:35:447:1409#0 1 1 76 54060 54135 [GACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGG] HWI-EAS406:6:37:1685:923#0 1 1 76 54060 54135 [ACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGA] HWI-EAS406:5:8:236:766#0 1 1 76 54061 54136 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:5:82:977:1482#0 1 1 76 54062 54137 [CTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAA] HWI-EAS406:6:95:275:559#0 1 1 76 54062 54137 [TCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAG] HWI-EAS406:7:15:625:809#0 1 1 76 54063 54138 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:8:3:842#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:67:1600:789#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:5:88:187:646#0 1 1 76 54064 54139 [CTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGG] HWI-EAS406:7:81:267:1832#0 1 1 76 54064 54139 [TCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGT] HWI-EAS406:5:38:235:1742#0 1 1 76 54065 54140 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:5:18:662:1105#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:6:3:1177:1854#0 1 1 76 54066 54141 [CTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTA] HWI-EAS406:7:9:992:765#0 1 1 76 54066 54141 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:43:854:1097#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:6:93:203:1181#0 1 1 76 54067 54142 [TCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTAT] HWI-EAS406:7:30:1236:146#0 1 1 76 54067 54142 [CTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATG] HWI-EAS406:5:41:1430:856#0 1 1 76 54068 54143 [TGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGA] HWI-EAS406:6:8:901:1916#0 1 1 76 54069 54144 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:5:47:597:469#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:6:41:457:1990#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:54:1001:853#0 1 1 76 54070 54145 [GGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAG] HWI-EAS406:7:75:488:1983#0 1 1 76 54070 54145 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:1:872:1748#0 1 1 76 54071 54146 [GTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGA] HWI-EAS406:7:99:765:526#0 1 1 76 54071 54146 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:5:80:1244:1040#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:10:1560:773#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:37:846:1253#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:43:1695:1212#0 1 1 76 54072 54147 [TGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGAT] HWI-EAS406:6:59:1265:423#0 1 1 76 54072 54147 [GTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATA] HWI-EAS406:5:74:851:1515#0 1 1 76 54073 54148 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:5:23:1249:1277#0 1 1 76 54074 54149 [TTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATAC] HWI-EAS406:7:34:354:425#0 1 1 76 54074 54149 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:5:35:998:808#0 1 1 76 54075 54150 [TAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACC] HWI-EAS406:7:61:191:1269#0 1 1 76 54075 54150 [CTGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTAC] HWI-EAS406:7:35:1265:691#0 1 1 76 54078 54153 [TGATCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACA] HWI-EAS406:6:67:942:1117#0 1 1 76 54079 54154 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:6:18:201:519#0 1 1 76 54082 54157 [TCGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGAT] HWI-EAS406:7:38:1036:1712#0 1 1 76 54082 54157 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:1:971:947#0 1 1 76 54083 54158 [CGTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATT] HWI-EAS406:6:95:362:782#0 1 1 76 54083 54158 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:5:22:289:559#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:60:698:460#0 1 1 76 54084 54159 [GTTCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTT] HWI-EAS406:6:71:177:953#0 1 1 76 54084 54159 [TCAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTG] HWI-EAS406:6:93:735:163#0 1 1 76 54086 54161 [CAGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGT] HWI-EAS406:7:44:31:512#0 1 1 76 54087 54162 [AGTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTG] HWI-EAS406:5:14:1556:1112#0 1 1 76 54088 54163 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:7:1377:1427#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:5:46:104:355#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:6:838:799#0 1 1 76 54089 54164 [GTGAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGG] HWI-EAS406:6:56:617:1957#0 1 1 76 54089 54164 [GAAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTG] HWI-EAS406:5:61:214:1783#0 1 1 76 54091 54166 [AAGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGC] HWI-EAS406:5:25:1168:1342#0 1 1 76 54092 54167 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:6:39:953:1361#0 1 1 76 54093 54168 [AGTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCT] HWI-EAS406:7:31:1758:925#0 1 1 76 54093 54168 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:50:1234:1908#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:6:51:539:1145#0 1 1 76 54094 54169 [GTACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTT] HWI-EAS406:7:42:988:259#0 1 1 76 54094 54169 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:5:94:1523:1523#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:6:962:858#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:28:1313:471#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:32:713:455#0 1 1 76 54095 54170 [TACCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTG] HWI-EAS406:7:60:1645:1371#0 1 1 76 54095 54170 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:5:69:1336:939#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:6:18:1512:1768#0 1 1 76 54097 54172 [CCCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAG] HWI-EAS406:7:76:96:774#0 1 1 76 54097 54172 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:6:57:1393:1335#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:36:530:50#0 1 1 76 54098 54173 [CCTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGA] HWI-EAS406:7:48:1493:1687#0 1 1 76 54098 54173 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:5:6:1630:1633#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:6:65:1117:1477#0 1 1 76 54099 54174 [CTGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGAT] HWI-EAS406:7:48:398:614#0 1 1 76 54099 54174 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:5:959:788#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:49:1299:1294#0 1 1 76 54100 54175 [TGTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATG] HWI-EAS406:7:65:760:767#0 1 1 76 54100 54175 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:5:42:1274:983#0 1 1 76 54101 54176 [GTGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGG] HWI-EAS406:7:16:1408:327#0 1 1 76 54101 54176 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:49:1260:1907#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:6:71:762:262#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:67:1718:913#0 1 1 76 54102 54177 [TGGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGG] HWI-EAS406:7:100:1551:1706#0 1 1 76 54102 54177 [GGGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGT] HWI-EAS406:7:39:537:2011#0 1 1 76 54103 54178 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:5:70:1264:579#0 1 1 76 54104 54179 [GGCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTG] HWI-EAS406:6:18:742:1162#0 1 1 76 54104 54179 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:5:38:610:654#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:6:5:1427:983#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:6:247:694#0 1 1 76 54105 54180 [GCATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA] HWI-EAS406:7:39:309:1243#0 1 1 76 54105 54180 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:5:36:1023:788#0 1 1 76 54106 54181 [CATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAG] HWI-EAS406:6:36:722:1541#0 1 1 76 54106 54181 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:54:1390:1329#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:5:84:296:1881#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:6:49:1063:1067#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:38:235:939#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:815#0 1 1 76 54107 54182 [ATCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGG] HWI-EAS406:7:70:1253:813#0 1 1 76 54107 54182 [TCTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGA] HWI-EAS406:7:66:668:514#0 1 1 76 54108 54183 [CTTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAG] HWI-EAS406:6:1:1168:1872#0 1 1 76 54109 54184 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:53:1102:724#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:5:96:530:2016#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:66:42:446#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:73:1393:935#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:6:90:175:1657#0 1 1 76 54110 54185 [TTAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGG] HWI-EAS406:7:49:1176:1859#0 1 1 76 54110 54185 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:7:1605:1811#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:6:25:678:836#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:26:1605:573#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:32:1175:618#0 1 1 76 54111 54186 [TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGC] HWI-EAS406:7:40:482:270#0 1 1 76 54111 54186 [AGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCT] HWI-EAS406:6:59:668:1088#0 1 1 76 54112 54187 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:5:89:237:262#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:6:82:981:753#0 1 1 76 54113 54188 [GAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTC] HWI-EAS406:7:95:125:1460#0 1 1 76 54113 54188 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:35:1057:851#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:5:94:541:1656#0 1 1 76 54116 54191 [GACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAG] HWI-EAS406:6:33:1425:321#0 1 1 76 54116 54191 [ACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGA] HWI-EAS406:6:10:1351:765#0 1 1 76 54117 54192 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:5:5:1510:1678#0 1 1 76 54119 54194 [CTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATC] HWI-EAS406:7:85:551:1050#0 1 1 76 54119 54194 [CTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATT] HWI-EAS406:7:44:439:848#0 1 1 76 54123 54198 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:37:674:1509#0 1 1 76 54124 54199 [TGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTG] HWI-EAS406:5:100:798:1572#0 1 1 76 54124 54199 [GTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGA] HWI-EAS406:7:56:798:1877#0 1 1 76 54125 54200 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:32:285:1614#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:5:33:1199:395#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:6:9:1257:567#0 1 1 76 54126 54201 [TGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGAT] HWI-EAS406:7:78:402:1695#0 1 1 76 54126 54201 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:5:73:501:691#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:42:1262:1782#0 1 1 76 54127 54202 [GAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATT] HWI-EAS406:7:62:1716:1116#0 1 1 76 54127 54202 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:47:319:1607#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:6:79:1415:718#0 1 1 76 54128 54203 [AAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTC] HWI-EAS406:7:17:1742:361#0 1 1 76 54128 54203 [AGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCT] HWI-EAS406:5:65:1683:1785#0 1 1 76 54129 54204 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:22:469:211#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:47:1051:822#0 1 1 76 54131 54206 [ATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAG] HWI-EAS406:6:89:645:1253#0 1 1 76 54131 54206 [TTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGG] HWI-EAS406:7:53:1035:1424#0 1 1 76 54132 54207 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:27:1133:755#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:5:94:227:1579#0 1 1 76 54134 54209 [GGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAA] HWI-EAS406:6:42:753:402#0 1 1 76 54134 54209 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:34:1248:1931#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:44:495:2018#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:6:72:1132:1576#0 1 1 76 54135 54210 [GAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAG] HWI-EAS406:7:64:220:1228#0 1 1 76 54135 54210 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:6:8:1387:1563#0 1 1 76 54136 54211 [AAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGG] HWI-EAS406:7:86:1191:1778#0 1 1 76 54136 54211 [AGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGC] HWI-EAS406:7:78:1540:1877#0 1 1 76 54137 54212 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:5:37:178:213#0 1 1 76 54139 54214 [GTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCA] HWI-EAS406:6:45:363:213#0 1 1 76 54139 54214 [TATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCAT] HWI-EAS406:5:3:156:1647#0 1 1 76 54140 54215 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:62:779:1177#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:72:936:54#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:5:79:541:1148#0 1 1 76 54141 54216 [ATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATT] HWI-EAS406:6:6:1460:1107#0 1 1 76 54141 54216 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:5:35:29:1868#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:89:1573:1987#0 1 1 76 54142 54217 [TGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTC] HWI-EAS406:7:92:1202:380#0 1 1 76 54142 54217 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:5:66:1651:1834#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:6:1:818:861#0 1 1 76 54143 54218 [GAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCT] HWI-EAS406:7:23:1150:620#0 1 1 76 54143 54218 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:9:600:1790#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:6:40:845:408#0 1 1 76 54144 54219 [AGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTT] HWI-EAS406:7:61:441:677#0 1 1 76 54144 54219 [GATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTA] HWI-EAS406:7:25:1391:905#0 1 1 76 54145 54220 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:29:1417:999#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:5:77:1148:453#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:28:317:1489#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:34:58:451#0 1 1 76 54146 54221 [ATACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAG] HWI-EAS406:6:65:1663:1191#0 1 1 76 54146 54221 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:5:52:1161:616#0 1 1 76 54147 54222 [TACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGC] HWI-EAS406:7:28:336:1807#0 1 1 76 54147 54222 [ACCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCT] HWI-EAS406:6:85:243:843#0 1 1 76 54148 54223 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:6:41:295:981#0 1 1 76 54149 54224 [CCTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTA] HWI-EAS406:7:66:140:852#0 1 1 76 54149 54224 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:5:79:393:543#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:18:1350:1820#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:32:1319:1017#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:46:923:1720#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:6:99:1138:1186#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:17:1267:1397#0 1 1 76 54150 54225 [CTACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTAC] HWI-EAS406:7:86:387:2021#0 1 1 76 54150 54225 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:16:1065:1213#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:19:675:634#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:46:1591:2004#0 1 1 76 54151 54226 [TACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACA] HWI-EAS406:6:99:1426:1408#0 1 1 76 54151 54226 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:12:881:861#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:929:724#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:5:34:1746:503#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:6:71:872:401#0 1 1 76 54152 54227 [ACAGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAG] HWI-EAS406:7:53:948:1175#0 1 1 76 54152 54227 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:56:246:799#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:58:242:1499#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:71:855:1885#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:6:84:220:1674#0 1 1 76 54154 54229 [AGATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCA] HWI-EAS406:7:48:1599:1908#0 1 1 76 54154 54229 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:5:21:1642:1137#0 1 1 76 54155 54230 [GATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAG] HWI-EAS406:6:6:1147:732#0 1 1 76 54155 54230 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:5:66:1128:1376#0 1 1 76 54156 54231 [ATTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGG] HWI-EAS406:6:55:656:391#0 1 1 76 54156 54231 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:20:1104:1681#0 1 1 76 54157 54232 [TTTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGA] HWI-EAS406:5:84:997:392#0 1 1 76 54157 54232 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:67:700:788#0 1 1 76 54158 54233 [TTTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAG] HWI-EAS406:5:89:1120:429#0 1 1 76 54158 54233 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:36:1143:227#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:5:80:711:956#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:36:1396:1577#0 1 1 76 54159 54234 [TTGTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGC] HWI-EAS406:6:88:584:1502#0 1 1 76 54159 54234 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:11:1516:1033#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:6:87:1474:820#0 1 1 76 54161 54236 [GTGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTA] HWI-EAS406:7:31:573:281#0 1 1 76 54161 54236 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:6:26:1456:433#0 1 1 76 54162 54237 [TGGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTAT] HWI-EAS406:7:58:1242:1021#0 1 1 76 54162 54237 [GGTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATT] HWI-EAS406:6:26:1525:983#0 1 1 76 54163 54238 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:21:1447:171#0 1 1 76 54164 54239 [GTGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTG] HWI-EAS406:6:53:579:1024#0 1 1 76 54164 54239 [TGCTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGT] HWI-EAS406:7:30:587:260#0 1 1 76 54165 54240 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:22:1574:1334#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:5:79:793:103#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:3:757:524#0 1 1 76 54167 54242 [CTTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTA] HWI-EAS406:6:37:1589:439#0 1 1 76 54167 54242 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:5:74:1683:444#0 1 1 76 54168 54243 [TTGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAA] HWI-EAS406:7:65:530:1740#0 1 1 76 54168 54243 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:60:700:816#0 1 1 76 54169 54244 [TGAGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAAT] HWI-EAS406:5:94:880:1637#0 1 1 76 54169 54244 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:5:40:1586:1236#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1383:228#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:6:79:1384:231#0 1 1 76 54171 54246 [AGATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGT] HWI-EAS406:7:27:357:718#0 1 1 76 54171 54246 [ATGGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGA] HWI-EAS406:5:40:1646:202#0 1 1 76 54173 54248 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:5:56:1143:581#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:31:1016:1570#0 1 1 76 54175 54250 [GGGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG] HWI-EAS406:7:46:593:1405#0 1 1 76 54175 54250 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:24:814:315#0 1 1 76 54176 54251 [GGTGAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGG] HWI-EAS406:6:82:967:1960#0 1 1 76 54176 54251 [GAGGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGG] HWI-EAS406:5:10:1130:1883#0 1 1 76 54179 54254 [GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGC] HWI-EAS406:7:68:216:273#0 1 1 76 54181 54256 [AGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCAC] HWI-EAS406:5:70:157:381#0 1 1 76 54183 54258 [GCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGA] HWI-EAS406:6:3:1482:934#0 1 1 76 54185 54260 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:6:38:723:1684#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:6:122:307#0 1 1 76 54186 54261 [CTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGAT] HWI-EAS406:7:47:563:1669#0 1 1 76 54186 54261 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:5:37:398:1887#0 1 1 76 54188 54263 [CAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTG] HWI-EAS406:6:39:44:975#0 1 1 76 54188 54263 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:5:57:1763:1732#0 1 1 76 54191 54266 [GATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATC] HWI-EAS406:6:57:337:21#0 1 1 76 54191 54266 [CCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCC] HWI-EAS406:5:72:1722:76#0 1 1 76 54194 54269 [CATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCA] HWI-EAS406:7:75:1542:775#0 1 1 76 54195 54270 [ATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCAT] HWI-EAS406:6:36:950:1807#0 1 1 76 54196 54271 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:55:252:1552#0 1 1 76 54198 54273 [TGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTT] HWI-EAS406:6:90:687:1011#0 1 1 76 54198 54273 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:5:22:933:1376#0 1 1 76 54199 54274 [GATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTG] HWI-EAS406:7:55:464:1339#0 1 1 76 54199 54274 [TTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGG] HWI-EAS406:5:7:1026:1071#0 1 1 76 54201 54276 [TCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGT] HWI-EAS406:5:95:1707:1819#0 1 1 76 54202 54277 [CTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTA] HWI-EAS406:6:7:272:1017#0 1 1 76 54203 54278 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:45:1766:1276#0 1 1 76 54204 54279 [TAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAA] HWI-EAS406:5:85:635:917#0 1 1 76 54204 54279 [AGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAA] HWI-EAS406:5:7:770:317#0 1 1 76 54205 54280 [GGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAG] HWI-EAS406:5:69:1660:1657#0 1 1 76 54206 54281 [GAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGA] HWI-EAS406:7:45:1239:1592#0 1 1 76 54207 54282 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:6:76:718:580#0 1 1 76 54210 54285 [GGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAA] HWI-EAS406:7:60:1450:766#0 1 1 76 54210 54285 [CCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACA] HWI-EAS406:6:38:1154:1262#0 1 1 76 54212 54287 [TCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCT] HWI-EAS406:6:74:673:1824#0 1 1 76 54216 54291 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:5:63:1141:1104#0 1 1 76 54218 54293 [TTAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCC] HWI-EAS406:7:34:280:1626#0 1 1 76 54218 54293 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:5:74:1362:1863#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:6:15:131:937#0 1 1 76 54219 54294 [TAGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCA] HWI-EAS406:7:2:622:1398#0 1 1 76 54219 54294 [AGCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCAC] HWI-EAS406:6:56:333:1558#0 1 1 76 54220 54295 [GCTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACT] HWI-EAS406:6:47:1572:1059#0 1 1 76 54221 54296 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:6:57:985:1452#0 1 1 76 54222 54297 [CTACAGCAGGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTT] HWI-EAS406:7:17:1673:794#0 1 1 76 54222 54297 [GGAGCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCA] HWI-EAS406:7:46:726:746#0 1 1 76 54230 54305 [GCTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGG] HWI-EAS406:7:52:668:1877#0 1 1 76 54233 54308 [CTATTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGG] HWI-EAS406:5:68:960:328#0 1 1 76 54234 54309 [TTGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAA] HWI-EAS406:5:30:1622:795#0 1 1 76 54237 54312 [TGTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAA] HWI-EAS406:6:66:1712:1855#0 1 1 76 54238 54313 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:5:13:1200:595#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:10:747:660#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:6:97:806:1606#0 1 1 76 54239 54314 [GTTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAA] HWI-EAS406:7:89:714:1430#0 1 1 76 54239 54314 [TTAATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAAT] HWI-EAS406:5:7:1135:1327#0 1 1 76 54240 54315 [AATGTGAAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGA] HWI-EAS406:7:48:1681:1982#0 1 1 76 54242 54317 [AAGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAAC] HWI-EAS406:7:37:1176:1255#0 1 1 76 54248 54323 [AGGAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACC] HWI-EAS406:7:13:1087:1854#0 1 1 76 54249 54324 [CACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTG] HWI-EAS406:7:70:359:1133#0 1 1 76 54256 54331 [ATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCG] HWI-EAS406:5:29:584:531#0 1 1 76 54260 54335 [TGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGG] HWI-EAS406:6:61:844:753#0 1 1 76 54262 54337 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:6:65:1481:1596#0 1 1 76 54263 54338 [GATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGC] HWI-EAS406:7:37:704:174#0 1 1 76 54263 54338 [ATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCA] HWI-EAS406:5:51:759:1539#0 1 1 76 54264 54339 [CATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCT] HWI-EAS406:5:20:1604:653#0 1 1 76 54269 54344 [TAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATT] HWI-EAS406:5:4:241:642#0 1 1 76 54277 54352 [AGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAA] HWI-EAS406:5:61:1463:1990#0 1 1 76 54280 54355 [GAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAG] HWI-EAS406:7:45:1358:89#0 1 1 76 54283 54358 [CATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATG] HWI-EAS406:6:28:262:1382#0 1 1 76 54286 54361 [ATCCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGG] HWI-EAS406:5:55:286:1719#0 1 1 76 54287 54362 [CCTCCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGC] HWI-EAS406:6:16:1456:1430#0 1 1 76 54289 54364 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:5:10:1100:437#0 1 1 76 54292 54367 [CCACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACT] HWI-EAS406:6:17:1373:1181#0 1 1 76 54292 54367 [ACTTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCC] HWI-EAS406:7:81:1055:997#0 1 1 76 54294 54369 [TTTGACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTG] HWI-EAS406:6:43:297:1857#0 1 1 76 54296 54371 [GACATCAAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTG] HWI-EAS406:6:62:846:1980#0 1 1 76 54299 54374 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:30:1260:1613#0 1 1 76 54305 54380 [AAGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGC] HWI-EAS406:5:97:536:1849#0 1 1 76 54305 54380 [AGGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCA] HWI-EAS406:7:46:769:555#0 1 1 76 54306 54381 [GGGGAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCAC] HWI-EAS406:7:47:449:1921#0 1 1 76 54307 54382 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:5:36:1008:1949#0 1 1 76 54310 54385 [GAAAATGAGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTT] HWI-EAS406:6:72:1417:797#0 1 1 76 54310 54385 [AGGAAACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGT] HWI-EAS406:5:48:777:1649#0 1 1 76 54317 54392 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:5:78:1126:1855#0 1 1 76 54321 54396 [AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACC] HWI-EAS406:6:75:1658:432#0 1 1 76 54321 54396 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:6:90:1610:226#0 1 1 76 54323 54398 [CCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCAC] HWI-EAS406:7:42:1194:1800#0 1 1 76 54323 54398 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:5:38:460:1961#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:6:2:1374:1550#0 1 1 76 54324 54399 [CAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACC] HWI-EAS406:7:36:699:705#0 1 1 76 54324 54399 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:6:82:30:684#0 1 1 76 54325 54400 [AACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCT] HWI-EAS406:7:16:1727:982#0 1 1 76 54325 54400 [ACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTG] HWI-EAS406:7:46:890:1228#0 1 1 76 54326 54401 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:6:28:1135:1646#0 1 1 76 54327 54402 [CTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGA] HWI-EAS406:7:56:206:264#0 1 1 76 54327 54402 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:5:91:349:1599#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:62:1521:1923#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:6:77:1438:1455#0 1 1 76 54329 54404 [GTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGG] HWI-EAS406:7:41:1061:217#0 1 1 76 54329 54404 [TGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGA] HWI-EAS406:7:62:904:312#0 1 1 76 54330 54405 [GTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGAC] HWI-EAS406:7:68:559:760#0 1 1 76 54331 54406 [CGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGAC] HWI-EAS406:6:23:1308:1435#0 1 1 76 54334 54409 [GGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGA] HWI-EAS406:5:9:436:1783#0 1 1 76 54336 54411 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:6:70:388:1231#0 1 1 76 54339 54414 [AAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGA] HWI-EAS406:7:37:360:1575#0 1 1 76 54339 54414 [AGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAG] HWI-EAS406:6:41:1079:775#0 1 1 76 54340 54415 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:6:49:1430:1667#0 1 1 76 54345 54420 [TCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGC] HWI-EAS406:7:22:1583:762#0 1 1 76 54345 54420 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:38:520:1866#0 1 1 76 54346 54421 [CTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCA] HWI-EAS406:6:68:1648:592#0 1 1 76 54346 54421 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:6:62:462:1119#0 1 1 76 54347 54422 [TACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCAT] HWI-EAS406:7:43:701:1133#0 1 1 76 54347 54422 [CATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCT] HWI-EAS406:6:20:1777:1193#0 1 1 76 54349 54424 [TTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCC] HWI-EAS406:7:77:1354:1160#0 1 1 76 54351 54426 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:13:1277:628#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:38:619:664#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:53:322:777#0 1 1 76 54352 54427 [TGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCC] HWI-EAS406:6:92:1767:1364#0 1 1 76 54352 54427 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:14:1063:1857#0 1 1 76 54354 54429 [AAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTC] HWI-EAS406:5:64:1260:939#0 1 1 76 54354 54429 [AGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCT] HWI-EAS406:7:36:764:2012#0 1 1 76 54355 54430 [AGATGGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTAC] HWI-EAS406:7:34:393:1997#0 1 1 76 54357 54432 [GGGCACTCCTGCTGATGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCAT] HWI-EAS406:6:94:1174:764#0 1 1 76 54361 54436 [TGAGCACCTTGAAGAGTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTA] HWI-EAS406:6:79:1020:780#0 1 1 76 54376 54451 [CGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTT] HWI-EAS406:6:68:1372:846#0 1 1 76 54406 54481 [GAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCATACTCCCTTGTATATACCATTTCATT] HWI-EAS406:6:81:1255:688#0 1 1 76 54410 54485 [TACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGA] HWI-EAS406:7:48:1267:1925#0 1 1 76 54460 54535 [CTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGACACAGAGA] HWI-EAS406:6:38:817:259#0 1 1 76 54462 54537 [TTCGGTATCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCAT] HWI-EAS406:7:50:111:1321#0 1 1 76 54505 54580 [TCTCTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCT] HWI-EAS406:7:66:316:1516#0 1 1 76 54512 54587 [CTCTCTACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTG] HWI-EAS406:6:61:1550:424#0 1 1 76 54515 54590 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:5:67:707:682#0 1 1 76 54520 54595 [TACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTT] HWI-EAS406:6:41:997:1467#0 1 1 76 54520 54595 [ACTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTG] HWI-EAS406:7:1:1038:1756#0 1 1 76 54521 54596 [CTTGACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGT] HWI-EAS406:6:35:1389:139#0 1 1 76 54522 54597 [GACGACACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC] HWI-EAS406:7:64:794:1071#0 1 1 76 54525 54600 [CACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGA] HWI-EAS406:6:48:1546:480#0 1 1 76 54530 54605 [ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAG] HWI-EAS406:5:4:440:970#0 1 1 76 54531 54606 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:6:47:966:1183#0 1 1 76 54533 54608 [AGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTC] HWI-EAS406:7:53:1319:1765#0 1 1 76 54533 54608 [ACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGC] HWI-EAS406:5:14:980:877#0 1 1 76 54537 54612 [TAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCA] HWI-EAS406:6:60:393:902#0 1 1 76 54543 54618 [ACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATA] HWI-EAS406:5:47:861:1612#0 1 1 76 54545 54620 [CAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCT] HWI-EAS406:6:41:1702:1042#0 1 1 76 54548 54623 [TTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTT] HWI-EAS406:6:36:1192:465#0 1 1 76 54552 54627 [TGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGC] HWI-EAS406:7:45:1771:132#0 1 1 76 54554 54629 [GGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATA] HWI-EAS406:6:55:141:877#0 1 1 76 54561 54636 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:6:41:492:1359#0 1 1 76 54566 54641 [CAAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAA] HWI-EAS406:7:48:1004:1533#0 1 1 76 54566 54641 [AAGTATTTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAA] HWI-EAS406:6:80:857:2034#0 1 1 76 54567 54642 [TTGATCATGTTTGCTTTGATGTTGTTTCATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAA] HWI-EAS406:7:45:1019:801#0 1 1 76 54573 54648 [TATAAAAAAAAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATT] HWI-EAS406:6:67:1105:1297#0 1 1 76 54635 54710 [AAAAAATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCAT] HWI-EAS406:6:72:1189:117#0 1 1 76 54644 54719 [AATCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGG] HWI-EAS406:6:55:1581:995#0 1 1 76 54648 54723 [TCAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAG] HWI-EAS406:5:35:444:949#0 1 1 76 54650 54725 [CAATCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGC] HWI-EAS406:6:11:10:647#0 1 1 76 54651 54726 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:6:33:396:1612#0 1 1 76 54654 54729 [TCATTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAAT] HWI-EAS406:7:44:1288:1818#0 1 1 76 54654 54729 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:57:1445:88#0 1 1 76 54657 54732 [TTTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGAT] HWI-EAS406:7:58:390:1937#0 1 1 76 54657 54732 [TTAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATT] HWI-EAS406:5:48:129:1825#0 1 1 76 54658 54733 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:39:1252:1264#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:5:54:537:1509#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:55:1562:1923#0 1 1 76 54659 54734 [TAGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTT] HWI-EAS406:7:56:421:1318#0 1 1 76 54659 54734 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:5:38:1272:690#0 1 1 76 54660 54735 [AGTTTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTT] HWI-EAS406:6:56:983:1532#0 1 1 76 54660 54735 [TTGCATCATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAA] HWI-EAS406:5:34:904:776#0 1 1 76 54663 54738 [CATTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTT] HWI-EAS406:6:58:1366:282#0 1 1 76 54669 54744 [GCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAA] HWI-EAS406:7:41:752:1291#0 1 1 76 54674 54749 [TTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAA] HWI-EAS406:5:56:960:1374#0 1 1 76 54677 54752 [TTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAAC] HWI-EAS406:5:53:1300:974#0 1 1 76 54678 54753 [AGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTA] HWI-EAS406:6:55:367:1351#0 1 1 76 54682 54757 [GGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTAC] HWI-EAS406:5:36:1085:1378#0 1 1 76 54683 54758 [TCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCA] HWI-EAS406:5:59:801:590#0 1 1 76 54689 54764 [AGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTT] HWI-EAS406:6:55:449:1480#0 1 1 76 54692 54767 [GCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGAC] HWI-EAS406:7:99:1141:692#0 1 1 76 54695 54770 [GCATTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCA] HWI-EAS406:7:99:1266:107#0 1 1 76 54706 54781 [TTCACTTGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCT] HWI-EAS406:6:52:219:1214#0 1 1 76 54709 54784 [TGCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAA] HWI-EAS406:7:59:687:763#0 1 1 76 54715 54790 [GCATTGGGAGCAATGATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAA] HWI-EAS406:6:68:1355:1044#0 1 1 76 54716 54791 [GATTTTGAATGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTT] HWI-EAS406:7:61:1525:1492#0 1 1 76 54730 54805 [TGCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTG] HWI-EAS406:7:67:1666:1088#0 1 1 76 54739 54814 [GCCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGA] HWI-EAS406:6:62:125:463#0 1 1 76 54740 54815 [TAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTC] HWI-EAS406:7:68:455:849#0 1 1 76 54746 54821 [CTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAA] HWI-EAS406:7:35:236:401#0 1 1 76 54755 54830 [TACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAAC] HWI-EAS406:5:5:1165:1267#0 1 1 76 54756 54831 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:73:1129:1305#0 1 1 76 54760 54835 [TTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGT] HWI-EAS406:5:77:78:460#0 1 1 76 54760 54835 [GCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTG] HWI-EAS406:6:13:1406:1469#0 1 1 76 54762 54837 [ACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGAT] HWI-EAS406:6:73:543:282#0 1 1 76 54764 54839 [TGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGC] HWI-EAS406:6:41:1338:1133#0 1 1 76 54767 54842 [GACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCT] HWI-EAS406:7:51:911:1053#0 1 1 76 54768 54843 [ACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTG] HWI-EAS406:6:50:547:1645#0 1 1 76 54769 54844 [TTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTC] HWI-EAS406:7:59:1428:643#0 1 1 76 54775 54850 [TTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCA] HWI-EAS406:5:40:180:1943#0 1 1 76 54776 54851 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:51:744:401#0 1 1 76 54777 54852 [TTGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAG] HWI-EAS406:6:55:619:899#0 1 1 76 54777 54852 [TGCACCTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGT] HWI-EAS406:7:37:1026:1049#0 1 1 76 54778 54853 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:43:715:1593#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:5:58:722:612#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:6:60:710:286#0 1 1 76 54783 54858 [CTCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTG] HWI-EAS406:7:34:199:796#0 1 1 76 54783 54858 [TCTCAAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGA] HWI-EAS406:5:55:1311:280#0 1 1 76 54784 54859 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:49:1088:1272#0 1 1 76 54788 54863 [AAAAAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCC] HWI-EAS406:5:61:216:737#0 1 1 76 54788 54863 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:5:48:640:385#0 1 1 76 54791 54866 [AAGACTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAAC] HWI-EAS406:6:33:476:1558#0 1 1 76 54791 54866 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:54:1410:1105#0 1 1 76 54795 54870 [CTTGTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACA] HWI-EAS406:6:76:835:1212#0 1 1 76 54795 54870 [GTATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACC] HWI-EAS406:6:32:1548:1312#0 1 1 76 54798 54873 [ATGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTT] HWI-EAS406:5:2:991:955#0 1 1 76 54800 54875 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:20:116:1761#0 1 1 76 54801 54876 [TGTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTA] HWI-EAS406:6:33:875:147#0 1 1 76 54801 54876 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:5:70:698:1812#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:6:51:1031:1841#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:41:946:1778#0 1 1 76 54802 54877 [GTTTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTAT] HWI-EAS406:7:58:1532:1630#0 1 1 76 54802 54877 [TTCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTT] HWI-EAS406:7:73:1264:585#0 1 1 76 54804 54879 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:6:52:1044:1885#0 1 1 76 54805 54880 [TCGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG] HWI-EAS406:7:55:1426:887#0 1 1 76 54805 54880 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:5:46:1126:1531#0 1 1 76 54806 54881 [CGAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGA] HWI-EAS406:7:58:493:1365#0 1 1 76 54806 54881 [GAGCCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAA] HWI-EAS406:7:48:1521:589#0 1 1 76 54807 54882 [CCTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTG] HWI-EAS406:6:68:305:556#0 1 1 76 54810 54885 [CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGA] HWI-EAS406:6:43:229:1765#0 1 1 76 54811 54886 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:5:42:1688:1220#0 1 1 76 54812 54887 [TTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAA] HWI-EAS406:7:40:1030:1731#0 1 1 76 54812 54887 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:42:1673:1475#0 1 1 76 54814 54889 [GAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACG] HWI-EAS406:6:70:544:1367#0 1 1 76 54814 54889 [AAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAA] HWI-EAS406:7:61:638:1444#0 1 1 76 54816 54891 [AACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAAC] HWI-EAS406:5:50:1059:1293#0 1 1 76 54817 54892 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:33:426:1747#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:58:1637:922#0 1 1 76 54819 54894 [CTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTT] HWI-EAS406:6:63:658:1278#0 1 1 76 54819 54894 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:5:2:610:578#0 1 1 76 54820 54895 [TCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTA] HWI-EAS406:7:84:157:423#0 1 1 76 54820 54895 [TTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAAT] HWI-EAS406:6:54:209:1630#0 1 1 76 54822 54897 [TCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATG] HWI-EAS406:7:97:963:1565#0 1 1 76 54823 54898 [CCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGC] HWI-EAS406:7:58:798:1339#0 1 1 76 54824 54899 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:6:3:699:1269#0 1 1 76 54828 54903 [AAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCT] HWI-EAS406:7:45:1362:1785#0 1 1 76 54828 54903 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1019:766#0 1 1 76 54830 54905 [ACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTG] HWI-EAS406:7:56:1589:741#0 1 1 76 54830 54905 [CTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGC] HWI-EAS406:6:42:710:1954#0 1 1 76 54831 54906 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:5:54:381:672#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:39:1669:961#0 1 1 76 54832 54907 [TTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCT] HWI-EAS406:6:60:398:1744#0 1 1 76 54832 54907 [TGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTC] HWI-EAS406:5:49:600:1346#0 1 1 76 54833 54908 [GTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCA] HWI-EAS406:5:35:1496:850#0 1 1 76 54834 54909 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:38:1776:564#0 1 1 76 54835 54910 [TTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCAT] HWI-EAS406:5:62:513:1672#0 1 1 76 54835 54910 [ATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGT] HWI-EAS406:5:60:635:1717#0 1 1 76 54838 54913 [TTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTC] HWI-EAS406:7:62:535:1449#0 1 1 76 54839 54914 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:5:70:739:325#0 1 1 76 54841 54916 [GCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCC] HWI-EAS406:6:99:1290:751#0 1 1 76 54841 54916 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:5:67:1236:1544#0 1 1 76 54842 54917 [CTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCT] HWI-EAS406:7:46:1007:418#0 1 1 76 54842 54917 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:5:35:654:1034#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:6:42:1426:1731#0 1 1 76 54843 54918 [TGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTT] HWI-EAS406:7:45:1558:1421#0 1 1 76 54843 54918 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:5:59:1538:1310#0 1 1 76 54846 54921 [AACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTG] HWI-EAS406:7:38:1321:484#0 1 1 76 54846 54921 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:49:1639:559#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:5:54:1083:293#0 1 1 76 54847 54922 [ACTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGT] HWI-EAS406:7:41:621:251#0 1 1 76 54847 54922 [CTCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTA] HWI-EAS406:5:53:908:1065#0 1 1 76 54848 54923 [TCAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTAC] HWI-EAS406:6:52:118:1211#0 1 1 76 54849 54924 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:46:1037:1066#0 1 1 76 54850 54925 [CAGTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACT] HWI-EAS406:6:50:1764:1024#0 1 1 76 54850 54925 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:5:68:808:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:6:44:1702:1045#0 1 1 76 54852 54927 [GTCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGA] HWI-EAS406:7:39:995:202#0 1 1 76 54852 54927 [TCTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAG] HWI-EAS406:7:73:846:1330#0 1 1 76 54853 54928 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:48:916:907#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:53:1292:1430#0 1 1 76 54854 54929 [CTTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGT] HWI-EAS406:7:62:427:1685#0 1 1 76 54854 54929 [TTTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTC] HWI-EAS406:7:56:426:1445#0 1 1 76 54855 54930 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:5:6:249:575#0 1 1 76 54856 54931 [TTGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCA] HWI-EAS406:6:56:321:1712#0 1 1 76 54856 54931 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:35:1110:1447#0 1 1 76 54857 54932 [TGAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCAT] HWI-EAS406:6:61:618:1165#0 1 1 76 54857 54932 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:54:67:926#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:5:61:782:1656#0 1 1 76 54858 54933 [GAAGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATG] HWI-EAS406:6:36:1678:1148#0 1 1 76 54858 54933 [AGCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGC] HWI-EAS406:6:23:681:145#0 1 1 76 54860 54935 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:5:53:996:669#0 1 1 76 54861 54936 [GCCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCT] HWI-EAS406:6:48:704:823#0 1 1 76 54861 54936 [CCAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTA] HWI-EAS406:6:52:340:757#0 1 1 76 54862 54937 [CAACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTAT] HWI-EAS406:7:45:1323:2026#0 1 1 76 54863 54938 [AACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATA] HWI-EAS406:5:48:1248:1119#0 1 1 76 54864 54939 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:5:62:1622:1873#0 1 1 76 54865 54940 [ACTACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATAC] HWI-EAS406:6:53:781:914#0 1 1 76 54865 54940 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:48:899:831#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1880#0 1 1 76 54867 54942 [TACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACAC] HWI-EAS406:7:64:1458:1878#0 1 1 76 54867 54942 [ACAACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACA] HWI-EAS406:7:55:1111:1721#0 1 1 76 54868 54943 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:56:720:921#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:58:723:506#0 1 1 76 54870 54945 [AACCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACT] HWI-EAS406:5:61:919:391#0 1 1 76 54870 54945 [CCTTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTG] HWI-EAS406:7:45:1333:485#0 1 1 76 54872 54947 [TTATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAG] HWI-EAS406:7:47:1544:994#0 1 1 76 54874 54949 [ATTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTT] HWI-EAS406:7:56:917:951#0 1 1 76 54876 54951 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:55:825:800#0 1 1 76 54877 54952 [TTTGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTG] HWI-EAS406:5:79:1069:1840#0 1 1 76 54877 54952 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:7:1637:1135#0 1 1 76 54879 54954 [TGAACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTC] HWI-EAS406:5:59:560:1386#0 1 1 76 54879 54954 [AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCAC] HWI-EAS406:5:47:1016:800#0 1 1 76 54881 54956 [ACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACA] HWI-EAS406:6:63:194:819#0 1 1 76 54882 54957 [GAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCT] HWI-EAS406:7:68:201:723#0 1 1 76 54885 54960 [AACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTT] HWI-EAS406:5:53:654:1096#0 1 1 76 54886 54961 [CTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATAC] HWI-EAS406:7:48:1114:1725#0 1 1 76 54892 54967 [TAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCA] HWI-EAS406:5:51:821:485#0 1 1 76 54894 54969 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:6:52:643:1405#0 1 1 76 54898 54973 [GCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCT] HWI-EAS406:7:53:919:1910#0 1 1 76 54898 54973 [CTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTT] HWI-EAS406:5:62:1517:1950#0 1 1 76 54899 54974 [TCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTT] HWI-EAS406:7:73:1005:1586#0 1 1 76 54901 54976 [CTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGAC] HWI-EAS406:5:43:445:1826#0 1 1 76 54906 54981 [AGTCATGGCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACT] HWI-EAS406:7:48:378:827#0 1 1 76 54927 55002 [GCTATACACACTTGAGTTGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAA] HWI-EAS406:7:62:475:1726#0 1 1 76 54934 55009 [CCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGAT] HWI-EAS406:6:44:1278:1465#0 1 1 76 54967 55042 [CTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTG] HWI-EAS406:5:53:476:1464#0 1 1 76 54972 55047 [TTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAG] HWI-EAS406:7:57:1087:444#0 1 1 76 54974 55049 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:5:48:1286:1898#0 1 1 76 54985 55060 [CTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGG] HWI-EAS406:7:57:598:842#0 1 1 76 54985 55060 [AGACCACTCCCAAAACCTTTTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTAC] HWI-EAS406:7:47:1400:1764#0 1 1 76 54995 55070 [TTCCTCCTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAG] HWI-EAS406:5:48:1077:629#0 1 1 76 55014 55089 [CTTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGG] HWI-EAS406:5:25:1199:349#0 1 1 76 55020 55095 [TTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGA] HWI-EAS406:5:59:447:1541#0 1 1 76 55022 55097 [TTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGTATCGGGAACGACAAT] HWI-EAS406:7:40:178:165#0 1 1 76 55030 55105 [CTCTATTGTCTAGCTATAGGTGGGGGTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGAC] HWI-EAS406:6:46:1242:756#0 1 1 76 55136 55211 [GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTT] HWI-EAS406:5:96:257:741#0 1 1 76 55161 55236 [GGAAAAGAATAGACTCTTTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTG] HWI-EAS406:6:54:667:1882#0 1 1 76 55198 55273 [TTGTGCTTAAGTGAATTGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCA] HWI-EAS406:5:54:89:1691#0 1 1 76 55215 55290 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5407-5482] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/55348-57402] There are [267] sequences in this contig [GAAAAAGGGGGCTAGCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAA] HWI-EAS406:5:71:963:1069#0 1 1 76 55357 55432 [TGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAG] HWI-EAS406:5:90:718:827#0 1 1 76 55395 55470 [GTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGA] HWI-EAS406:6:50:1068:1124#0 1 1 76 55396 55471 [TTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGAT] HWI-EAS406:7:46:487:1859#0 1 1 76 55397 55472 [GTAGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGA] HWI-EAS406:7:93:476:1080#0 1 1 76 55421 55496 [AGATTTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAAT] HWI-EAS406:5:75:1472:1372#0 1 1 76 55423 55498 [TTCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATT] HWI-EAS406:5:23:784:918#0 1 1 76 55427 55502 [TCAAAGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTG] HWI-EAS406:7:54:921:569#0 1 1 76 55428 55503 [AGAGAAGGAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTA] HWI-EAS406:5:62:285:936#0 1 1 76 55432 55507 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:5:57:761:2009#0 1 1 76 55439 55514 [GAGTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTAT] HWI-EAS406:6:36:654:544#0 1 1 76 55439 55514 [TAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTT] HWI-EAS406:5:47:1330:1958#0 1 1 76 55443 55518 [GTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGA] HWI-EAS406:7:46:1751:277#0 1 1 76 55447 55522 [TTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAG] HWI-EAS406:5:48:1050:431#0 1 1 76 55451 55526 [AGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGG] HWI-EAS406:5:56:1503:1888#0 1 1 76 55453 55528 [GGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGT] HWI-EAS406:5:63:235:1522#0 1 1 76 55454 55529 [ATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAG] HWI-EAS406:7:57:718:866#0 1 1 76 55456 55531 [CTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAA] HWI-EAS406:5:63:881:1689#0 1 1 76 55458 55533 [GGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATG] HWI-EAS406:5:56:1714:198#0 1 1 76 55463 55538 [GTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGG] HWI-EAS406:6:50:1063:640#0 1 1 76 55464 55539 [AGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATT] HWI-EAS406:7:91:607:301#0 1 1 76 55469 55544 [TGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAG] HWI-EAS406:5:46:26:1147#0 1 1 76 55472 55547 [GTTGGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTG] HWI-EAS406:7:45:628:1522#0 1 1 76 55477 55552 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:6:87:1690:975#0 1 1 76 55480 55555 [GGGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTAT] HWI-EAS406:7:56:137:573#0 1 1 76 55480 55555 [GGTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATG] HWI-EAS406:7:68:1555:1689#0 1 1 76 55481 55556 [GTTTGACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGC] HWI-EAS406:5:58:682:1738#0 1 1 76 55482 55557 [GACATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGA] HWI-EAS406:6:31:1175:1548#0 1 1 76 55486 55561 [CATTTGGGAATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGT] HWI-EAS406:5:41:613:1556#0 1 1 76 55488 55563 [AATGATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCT] HWI-EAS406:7:35:208:92#0 1 1 76 55496 55571 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:6:59:1065:1018#0 1 1 76 55499 55574 [GATTGTGTAATTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTC] HWI-EAS406:7:62:287:374#0 1 1 76 55499 55574 [TTGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATAT] HWI-EAS406:5:60:1126:457#0 1 1 76 55509 55584 [TGTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATT] HWI-EAS406:5:52:1074:921#0 1 1 76 55510 55585 [GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTA] HWI-EAS406:6:59:782:205#0 1 1 76 55511 55586 [ATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATG] HWI-EAS406:6:66:1100:1007#0 1 1 76 55513 55588 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:5:76:618:12#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:6:53:136:1281#0 1 1 76 55515 55590 [GTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTG] HWI-EAS406:7:54:741:1995#0 1 1 76 55515 55590 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:5:49:1651:561#0 1 1 76 55517 55592 [TTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCA] HWI-EAS406:7:42:801:728#0 1 1 76 55517 55592 [AACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTT] HWI-EAS406:6:58:52:1428#0 1 1 76 55532 55607 [TGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTT] HWI-EAS406:5:51:1107:1138#0 1 1 76 55537 55612 [GGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTG] HWI-EAS406:6:51:1655:1268#0 1 1 76 55538 55613 [AGCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAA] HWI-EAS406:7:52:109:1569#0 1 1 76 55546 55621 [GCATTGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAAC] HWI-EAS406:6:51:638:1649#0 1 1 76 55547 55622 [TGTATGCATGAGTTGGTCCCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACC] HWI-EAS406:6:54:1524:978#0 1 1 76 55551 55626 [CCTTTCTTAGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTT] HWI-EAS406:6:57:1473:655#0 1 1 76 55569 55644 [AGATATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCT] HWI-EAS406:5:49:831:1474#0 1 1 76 55577 55652 [TATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAAT] HWI-EAS406:5:51:1389:835#0 1 1 76 55582 55657 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:5:46:340:348#0 1 1 76 55587 55662 [TGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTT] HWI-EAS406:7:56:1390:1023#0 1 1 76 55587 55662 [CAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAAT] HWI-EAS406:6:51:162:1427#0 1 1 76 55591 55666 [TGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAA] HWI-EAS406:6:56:1638:945#0 1 1 76 55594 55669 [GCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTC] HWI-EAS406:5:48:1495:1062#0 1 1 76 55601 55676 [CTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTT] HWI-EAS406:6:46:718:1420#0 1 1 76 55605 55680 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:491:137#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:5:50:874:1585#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:49:1696:321#0 1 1 76 55606 55681 [TTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTA] HWI-EAS406:6:82:1616:1924#0 1 1 76 55606 55681 [GAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACC] HWI-EAS406:5:7:563:689#0 1 1 76 55613 55688 [AAACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGA] HWI-EAS406:7:55:573:1885#0 1 1 76 55619 55694 [AACCACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGAC] HWI-EAS406:7:56:1249:1152#0 1 1 76 55620 55695 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:42:25:1251#0 1 1 76 55623 55698 [CACCTTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTG] HWI-EAS406:6:52:505:1902#0 1 1 76 55623 55698 [TTAAAGATCATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACC] HWI-EAS406:7:52:999:403#0 1 1 76 55627 55702 [ATATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCA] HWI-EAS406:7:46:1627:1353#0 1 1 76 55636 55711 [TATGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCAT] HWI-EAS406:5:45:1490:1390#0 1 1 76 55637 55712 [TGTTTTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTT] HWI-EAS406:5:50:662:1986#0 1 1 76 55639 55714 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:42:1301:800#0 1 1 76 55643 55718 [TTGAACCTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAA] HWI-EAS406:6:46:1577:1890#0 1 1 76 55643 55718 [CTCTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTC] HWI-EAS406:7:51:669:996#0 1 1 76 55649 55724 [TTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACC] HWI-EAS406:6:41:993:1893#0 1 1 76 55652 55727 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:40:957:1998#0 1 1 76 55653 55728 [TGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCT] HWI-EAS406:7:54:1081:289#0 1 1 76 55653 55728 [TCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATG] HWI-EAS406:6:43:1323:680#0 1 1 76 55657 55732 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:13:1242:1637#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:5:59:719:373#0 1 1 76 55660 55735 [CTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTT] HWI-EAS406:7:61:535:209#0 1 1 76 55660 55735 [GAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGT] HWI-EAS406:5:29:789:396#0 1 1 76 55663 55738 [AAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTT] HWI-EAS406:5:57:1125:1370#0 1 1 76 55667 55742 [AAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTA] HWI-EAS406:5:52:46:1447#0 1 1 76 55668 55743 [AGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAAT] HWI-EAS406:6:47:1369:425#0 1 1 76 55670 55745 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:57:74:1491#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:6:64:106:1410#0 1 1 76 55674 55749 [TTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAAT] HWI-EAS406:7:50:633:1788#0 1 1 76 55674 55749 [CTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGA] HWI-EAS406:7:61:1532:1262#0 1 1 76 55678 55753 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:40:151:1251#0 1 1 76 55681 55756 [ACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAG] HWI-EAS406:7:54:251:1597#0 1 1 76 55681 55756 [CAACCAAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTG] HWI-EAS406:6:55:94:1866#0 1 1 76 55684 55759 [AAATGACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGA] HWI-EAS406:6:28:85:1002#0 1 1 76 55689 55764 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:34:431:1336#0 1 1 76 55693 55768 [GACTTGGACCAACTGACCATTTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTG] HWI-EAS406:5:55:1108:653#0 1 1 76 55693 55768 [TTGCAAGAATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGA] HWI-EAS406:6:51:1014:1766#0 1 1 76 55713 55788 [GCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGG] HWI-EAS406:7:4:629:1835#0 1 1 76 55878 55953 [CCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTT] HWI-EAS406:5:73:1450:1470#0 1 1 76 55882 55957 [TATGAGTTCTAGAAAGTTCACTTGTGGACAAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTAT] HWI-EAS406:7:84:817:413#0 1 1 76 55902 55977 [TTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGG] HWI-EAS406:7:27:1672:525#0 1 1 76 55947 56022 [TTCATCCATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTT] HWI-EAS406:5:90:624:1900#0 1 1 76 55989 56064 [ATGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGT] HWI-EAS406:6:25:1007:1215#0 1 1 76 55996 56071 [TGTGCATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTA] HWI-EAS406:6:61:1428:1819#0 1 1 76 55997 56072 [ATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGA] HWI-EAS406:6:9:412:656#0 1 1 76 56002 56077 [TGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTAC] HWI-EAS406:7:82:415:680#0 1 1 76 56006 56081 [TCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCAC] HWI-EAS406:5:74:590:268#0 1 1 76 56009 56084 [GTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACAT] HWI-EAS406:6:66:426:1137#0 1 1 76 56011 56086 [TAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGA] HWI-EAS406:6:86:83:1170#0 1 1 76 56014 56089 [AGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAG] HWI-EAS406:5:28:1738:1473#0 1 1 76 56015 56090 [TTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC] HWI-EAS406:7:52:567:938#0 1 1 76 56018 56093 [GTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGA] HWI-EAS406:7:36:829:1115#0 1 1 76 56033 56108 [TTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCT] HWI-EAS406:5:22:117:626#0 1 1 76 56046 56121 [CATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAA] HWI-EAS406:6:3:1422:1893#0 1 1 76 56050 56125 [AGTCCTTATCAGGTATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTG] HWI-EAS406:6:75:599:1385#0 1 1 76 56058 56133 [CATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACA] HWI-EAS406:5:67:412:1880#0 1 1 76 56111 56186 [ATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACAC] HWI-EAS406:6:92:1318:383#0 1 1 76 56112 56187 [GAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCA] HWI-EAS406:7:60:1069:1928#0 1 1 76 56117 56192 [CAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCG] HWI-EAS406:5:82:677:1783#0 1 1 76 56122 56197 [AGAGTGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTAT] HWI-EAS406:5:16:298:1865#0 1 1 76 56137 56212 [GCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGAC] HWI-EAS406:7:40:1346:617#0 1 1 76 56160 56235 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:5:86:546:731#0 1 1 76 56195 56270 [TCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGA] HWI-EAS406:7:82:1252:640#0 1 1 76 56195 56270 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:22:1001:501#0 1 1 76 56226 56301 [CCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGA] HWI-EAS406:6:68:540:1042#0 1 1 76 56226 56301 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:73:674:1605#0 1 1 76 56237 56312 [GGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACG] HWI-EAS406:7:95:794:603#0 1 1 76 56237 56312 [GTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGC] HWI-EAS406:7:35:252:634#0 1 1 76 56244 56319 [CGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCAT] HWI-EAS406:5:8:286:980#0 1 1 76 56250 56325 [CTCGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCT] HWI-EAS406:7:2:863:788#0 1 1 76 56263 56338 [CGGAGACGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCG] HWI-EAS406:5:71:330:1040#0 1 1 76 56265 56340 [CGCGAGAACGAGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGA] HWI-EAS406:7:24:1479:1294#0 1 1 76 56271 56346 [AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAG] HWI-EAS406:6:9:352:544#0 1 1 76 56281 56356 [CCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGA] HWI-EAS406:6:26:317:742#0 1 1 76 56284 56359 [CGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGAC] HWI-EAS406:5:15:749:198#0 1 1 76 56285 56360 [ACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGA] HWI-EAS406:5:48:199:1803#0 1 1 76 56292 56367 [ACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTC] HWI-EAS406:6:74:1789:781#0 1 1 76 56305 56380 [ACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTAT] HWI-EAS406:5:68:91:1454#0 1 1 76 56310 56385 [CGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG] HWI-EAS406:5:39:1537:832#0 1 1 76 56311 56386 [GAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGG] HWI-EAS406:6:3:1014:489#0 1 1 76 56312 56387 [CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGA] HWI-EAS406:7:63:606:2004#0 1 1 76 56317 56392 [GCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACA] HWI-EAS406:7:58:773:1386#0 1 1 76 56322 56397 [CACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGC] HWI-EAS406:6:5:746:1848#0 1 1 76 56328 56403 [TCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGA] HWI-EAS406:6:36:329:384#0 1 1 76 56338 56413 [CAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAG] HWI-EAS406:6:68:310:1837#0 1 1 76 56352 56427 [GCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGAC] HWI-EAS406:6:15:1389:1537#0 1 1 76 56356 56431 [CACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCTCTCAGAGCGACCCAC] HWI-EAS406:5:70:1186:1514#0 1 1 76 56360 56435 [GAGTGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTC] HWI-EAS406:5:16:713:561#0 1 1 76 56412 56487 [AGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA] HWI-EAS406:7:86:116:1250#0 1 1 76 56451 56526 [GGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGC] HWI-EAS406:7:22:1229:1224#0 1 1 76 56456 56531 [TGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTC] HWI-EAS406:5:75:885:1647#0 1 1 76 56465 56540 [AGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCA] HWI-EAS406:6:99:1323:2030#0 1 1 76 56471 56546 [GCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCAT] HWI-EAS406:6:36:1768:749#0 1 1 76 56472 56547 [ACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTAT] HWI-EAS406:5:64:1031:433#0 1 1 76 56475 56550 [CCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACG] HWI-EAS406:5:54:449:1311#0 1 1 76 56480 56555 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:29:821:1114#0 1 1 76 56481 56556 [CGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGT] HWI-EAS406:6:51:119:1731#0 1 1 76 56481 56556 [TTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGT] HWI-EAS406:6:54:1070:416#0 1 1 76 56623 56698 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:5:76:1124:1673#0 1 1 76 56655 56730 [CTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACA] HWI-EAS406:6:86:910:364#0 1 1 76 56655 56730 [CTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAA] HWI-EAS406:5:77:1007:635#0 1 1 76 56669 56744 [TCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAAT] HWI-EAS406:5:6:1619:1892#0 1 1 76 56670 56745 [TGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGG] HWI-EAS406:6:75:896:271#0 1 1 76 56680 56755 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:6:93:695:831#0 1 1 76 56683 56758 [TTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTT] HWI-EAS406:7:47:1300:725#0 1 1 76 56683 56758 [TGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGA] HWI-EAS406:5:9:1290:1387#0 1 1 76 56690 56765 [TTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAAT] HWI-EAS406:6:19:599:1637#0 1 1 76 56692 56767 [TCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATC] HWI-EAS406:5:42:1233:1944#0 1 1 76 56693 56768 [GTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGG] HWI-EAS406:7:43:1340:1098#0 1 1 76 56697 56772 [TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGAT] HWI-EAS406:7:77:529:595#0 1 1 76 56701 56776 [CTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATT] HWI-EAS406:5:91:1026:1702#0 1 1 76 56702 56777 [TGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAG] HWI-EAS406:7:74:472:989#0 1 1 76 56704 56779 [GATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAG] HWI-EAS406:7:38:1310:724#0 1 1 76 56708 56783 [ATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGT] HWI-EAS406:5:36:1704:1002#0 1 1 76 56709 56784 [CTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATC] HWI-EAS406:5:32:857:416#0 1 1 76 56713 56788 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:13:567:1632#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:5:72:1130:1035#0 1 1 76 56716 56791 [ATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACC] HWI-EAS406:7:11:320:1138#0 1 1 76 56716 56791 [TTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGG] HWI-EAS406:5:29:1531:1113#0 1 1 76 56721 56796 [TCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAA] HWI-EAS406:6:70:94:850#0 1 1 76 56723 56798 [TGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG] HWI-EAS406:5:56:283:533#0 1 1 76 56731 56806 [TTAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTA] HWI-EAS406:7:54:629:1409#0 1 1 76 56734 56809 [TAATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAG] HWI-EAS406:5:69:1170:963#0 1 1 76 56735 56810 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:5:59:659:573#0 1 1 76 56739 56814 [CTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAG] HWI-EAS406:7:10:1271:1176#0 1 1 76 56739 56814 [GAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGAT] HWI-EAS406:7:55:717:1077#0 1 1 76 56741 56816 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:5:49:951:1788#0 1 1 76 56742 56817 [AAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATT] HWI-EAS406:6:44:1440:809#0 1 1 76 56742 56817 [AATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTA] HWI-EAS406:5:61:1761:440#0 1 1 76 56743 56818 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:5:56:427:636#0 1 1 76 56746 56821 [CCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGG] HWI-EAS406:7:45:818:1084#0 1 1 76 56746 56821 [ATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGAT] HWI-EAS406:5:48:1421:738#0 1 1 76 56751 56826 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:5:46:1433:471#0 1 1 76 56753 56828 [GGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTA] HWI-EAS406:6:46:758:450#0 1 1 76 56753 56828 [TTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTT] HWI-EAS406:6:85:924:1183#0 1 1 76 56757 56832 [AGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGA] HWI-EAS406:6:29:457:1255#0 1 1 76 56760 56835 [CATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGAT] HWI-EAS406:6:51:1250:1394#0 1 1 76 56768 56843 [ATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATG] HWI-EAS406:7:43:348:1667#0 1 1 76 56769 56844 [TGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAG] HWI-EAS406:7:51:693:440#0 1 1 76 56780 56855 [CCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATA] HWI-EAS406:7:61:270:674#0 1 1 76 56790 56865 [TTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTT] HWI-EAS406:6:100:780:1104#0 1 1 76 56793 56868 [TTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGC] HWI-EAS406:7:51:375:1103#0 1 1 76 56799 56874 [GAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATC] HWI-EAS406:7:43:1468:442#0 1 1 76 56812 56887 [TAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAAT] HWI-EAS406:7:43:612:1832#0 1 1 76 56817 56892 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:3:328:1741#0 1 1 76 56828 56903 [AGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGA] HWI-EAS406:5:51:928:1230#0 1 1 76 56828 56903 [GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAG] HWI-EAS406:6:61:1150:157#0 1 1 76 56841 56916 [ATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGT] HWI-EAS406:7:45:1719:1574#0 1 1 76 56842 56917 [TTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTG] HWI-EAS406:7:22:1656:1000#0 1 1 76 56847 56922 [TATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTC] HWI-EAS406:5:40:782:1903#0 1 1 76 56864 56939 [TTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACC] HWI-EAS406:7:47:1399:1840#0 1 1 76 56867 56942 [CTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGA] HWI-EAS406:7:36:1214:128#0 1 1 76 56870 56945 [TAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATG] HWI-EAS406:6:67:659:674#0 1 1 76 56883 56958 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:5:34:482:363#0 1 1 76 56884 56959 [AATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGA] HWI-EAS406:6:31:1738:245#0 1 1 76 56884 56959 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:5:17:980:1498#0 1 1 76 56890 56965 [AATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCC] HWI-EAS406:6:43:1069:537#0 1 1 76 56890 56965 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:6:60:1237:1921#0 1 1 76 56892 56967 [TGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCG] HWI-EAS406:7:62:1556:1902#0 1 1 76 56892 56967 [GCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGA] HWI-EAS406:6:45:845:1882#0 1 1 76 56893 56968 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:10:320:1442#0 1 1 76 56894 56969 [CATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAG] HWI-EAS406:6:85:939:1848#0 1 1 76 56894 56969 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:6:21:964:532#0 1 1 76 56895 56970 [ATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGA] HWI-EAS406:7:11:715:1562#0 1 1 76 56895 56970 [TCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGAC] HWI-EAS406:6:83:1490:1557#0 1 1 76 56896 56971 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:5:83:1238:1840#0 1 1 76 56897 56972 [CTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACA] HWI-EAS406:6:51:1716:996#0 1 1 76 56897 56972 [TTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAA] HWI-EAS406:7:30:372:1304#0 1 1 76 56898 56973 [TCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAAC] HWI-EAS406:7:19:739:163#0 1 1 76 56899 56974 [CTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACT] HWI-EAS406:6:99:1305:973#0 1 1 76 56900 56975 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:5:68:1372:1083#0 1 1 76 56902 56977 [GAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCT] HWI-EAS406:7:21:892:1201#0 1 1 76 56902 56977 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:42:1519:306#0 1 1 76 56903 56978 [AGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTC] HWI-EAS406:7:43:649:1817#0 1 1 76 56903 56978 [TTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT] HWI-EAS406:5:48:1749:825#0 1 1 76 56905 56980 [TGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTA] HWI-EAS406:5:63:1363:862#0 1 1 76 56906 56981 [GGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAG] HWI-EAS406:7:49:763:1786#0 1 1 76 56907 56982 [CCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGC] HWI-EAS406:6:80:1615:1056#0 1 1 76 56909 56984 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:36:1452:570#0 1 1 76 56911 56986 [ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTT] HWI-EAS406:5:65:397:1874#0 1 1 76 56911 56986 [CAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTA] HWI-EAS406:7:71:215:1096#0 1 1 76 56914 56989 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:5:94:1025:901#0 1 1 76 56917 56992 [TTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTA] HWI-EAS406:6:51:1633:1293#0 1 1 76 56917 56992 [TGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTAT] HWI-EAS406:5:4:1293:1664#0 1 1 76 56918 56993 [GTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATA] HWI-EAS406:7:54:1634:1722#0 1 1 76 56919 56994 [TTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATAC] HWI-EAS406:6:67:934:751#0 1 1 76 56920 56995 [GATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTT] HWI-EAS406:5:47:490:994#0 1 1 76 56922 56997 [TTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCA] HWI-EAS406:5:44:1294:1484#0 1 1 76 56927 57002 [TAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAA] HWI-EAS406:5:84:526:435#0 1 1 76 56928 57003 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:45:1491:692#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:5:89:1540:722#0 1 1 76 56929 57004 [AGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAA] HWI-EAS406:6:10:510:1378#0 1 1 76 56929 57004 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:5:40:1126:1227#0 1 1 76 56938 57013 [TCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGT] HWI-EAS406:7:70:23:1316#0 1 1 76 56938 57013 [CACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTT] HWI-EAS406:5:63:428:752#0 1 1 76 56939 57014 [ACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTG] HWI-EAS406:6:61:1137:1230#0 1 1 76 56940 57015 [CGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTA] HWI-EAS406:5:56:1494:1229#0 1 1 76 56943 57018 [TGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATA] HWI-EAS406:5:49:1013:1360#0 1 1 76 56957 57032 [AAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGC] HWI-EAS406:7:14:1303:1511#0 1 1 76 56959 57034 [CTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGTA] HWI-EAS406:7:55:713:259#0 1 1 76 56976 57051 [GATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTA] HWI-EAS406:5:53:850:1541#0 1 1 76 57029 57104 [TGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCA] HWI-EAS406:7:56:1093:1703#0 1 1 76 57044 57119 [GATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATA] HWI-EAS406:5:86:1123:1484#0 1 1 76 57054 57129 [CTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCT] HWI-EAS406:5:69:567:774#0 1 1 76 57059 57134 [TGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAG] HWI-EAS406:6:44:1168:1730#0 1 1 76 57093 57168 [ATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTG] HWI-EAS406:7:52:50:1064#0 1 1 76 57097 57172 [TGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATT] HWI-EAS406:7:52:1393:1554#0 1 1 76 57100 57175 [GTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTG] HWI-EAS406:6:56:338:841#0 1 1 76 57101 57176 [TCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTT] HWI-EAS406:7:58:819:1006#0 1 1 76 57117 57192 [TAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTC] HWI-EAS406:5:36:8:1006#0 1 1 76 57122 57197 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/58204-58279] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/5838-5980] There are [3] sequences in this contig [CCAGGAACCAGACTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGAC] HWI-EAS406:6:65:880:1505#0 1 1 76 5846 5921 [CTTGTGATCATCACAACTCTAGCGGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCT] HWI-EAS406:5:68:1151:38#0 1 1 76 5858 5933 [CTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTTTTGGCCACAG] HWI-EAS406:6:51:497:1007#0 1 1 76 5885 5960 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59180-59255] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/59564-59639] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6019-6218] There are [3] sequences in this contig [CTGCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTAATCC] HWI-EAS406:5:47:756:602#0 1 1 76 6019 6094 [CAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGG] HWI-EAS406:6:1:1675:1977#0 1 1 76 6118 6193 [AACGTGACTCAGATTTTCAGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGA] HWI-EAS406:7:67:608:1846#0 1 1 76 6143 6218 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/60981-61108] There are [3] sequences in this contig [CCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCC] HWI-EAS406:7:49:917:519#0 1 1 76 60981 61056 [GCTGATTCATCGTCTCCGCCTCAGTCTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCAT] HWI-EAS406:5:52:235:104#0 1 1 76 61008 61083 [CTTCTCACCCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGC] HWI-EAS406:6:63:1158:1175#0 1 1 76 61033 61108 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61200-61321] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61378-61517] There are [3] sequences in this contig [CCTCTCAGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAA] HWI-EAS406:7:100:1619:467#0 1 1 76 61378 61453 [AGGTTGTTTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAG] HWI-EAS406:7:53:1655:1631#0 1 1 76 61384 61459 [TTGGGTTCACAAGTACAGCTCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTT] HWI-EAS406:7:97:876:768#0 1 1 76 61442 61517 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/61593-61724] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62569-62649] There are [2] sequences in this contig [GGTATGTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGC] HWI-EAS406:7:28:1332:725#0 1 1 76 62569 62644 [GTACACATTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGC] HWI-EAS406:5:33:728:1075#0 1 1 76 62574 62649 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/62662-63010] There are [4] sequences in this contig [TTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCTTATCTTACTCCTACTAATACATAC] HWI-EAS406:7:60:936:1903#0 1 1 76 62669 62744 [TATAAGCTTATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAG] HWI-EAS406:6:4:1187:950#0 1 1 76 62713 62788 [CTAGGAAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAA] HWI-EAS406:6:86:576:1275#0 1 1 76 62839 62914 [AAAGCAGCCGAGAAAGCACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAG] HWI-EAS406:5:34:1205:1314#0 1 1 76 62844 62919 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63019-63141] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63695-63788] There are [2] sequences in this contig [GCTTTACAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC] HWI-EAS406:6:74:1616:1302#0 1 1 76 63695 63770 [AGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTCTCAGGTCCGTTTTAGTCT] HWI-EAS406:7:50:829:192#0 1 1 76 63713 63788 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/63912-64054] There are [2] sequences in this contig [GTGTGTTAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAA] HWI-EAS406:7:40:667:1044#0 1 1 76 63973 64048 [TAATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGATCTC] HWI-EAS406:7:82:846:2011#0 1 1 76 63979 64054 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64197-64278] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64487-64586] There are [2] sequences in this contig [AACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTG] HWI-EAS406:7:73:1763:946#0 1 1 76 64487 64562 [TTCAGAGAGTCGTCTATTCCTTCATGTTCTTAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCT] HWI-EAS406:6:16:1080:412#0 1 1 76 64511 64586 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64588-64674] There are [2] sequences in this contig [TTGTTCATTTTTAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGA] HWI-EAS406:6:68:677:1734#0 1 1 76 64588 64663 [TAGGTAAGTAAATTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAG] HWI-EAS406:7:55:962:1888#0 1 1 76 64599 64674 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/64700-64901] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6476-6551] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66034-66109] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/66927-67002] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67589-67700] There are [2] sequences in this contig [CACCGCTCGCTTCTCTTTAAATGCTTCTCCAGTTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAA] HWI-EAS406:5:59:105:1182#0 1 1 76 67589 67664 [ATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGGTCGTTTGTAC] HWI-EAS406:6:34:1644:1455#0 1 1 76 67625 67700 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/67814-67915] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/6801-6876] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69468-69657] There are [4] sequences in this contig [TCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGT] HWI-EAS406:6:14:421:1719#0 1 1 76 69468 69543 [CAAAAAAGAAGAAGAAAAGATCATTCTATACGCAAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTC] HWI-EAS406:7:53:214:645#0 1 1 76 69477 69552 [AAATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTCTTCTT] HWI-EAS406:7:79:858:1175#0 1 1 76 69510 69585 [GACTCTTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCACG] HWI-EAS406:6:7:930:1662#0 1 1 76 69576 69651 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69676-69917] There are [4] sequences in this contig [GAATCCTTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA] HWI-EAS406:7:11:1781:2005#0 1 1 76 69785 69860 [CAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGA] HWI-EAS406:7:56:1325:830#0 1 1 76 69820 69895 [AAGCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCG] HWI-EAS406:7:15:856:368#0 1 1 76 69840 69915 [GCAGTTCCTCCACACCTGAGAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGT] HWI-EAS406:7:66:201:1411#0 1 1 76 69842 69917 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/69978-70113] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/70804-71412] There are [13] sequences in this contig [GCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTC] HWI-EAS406:5:35:525:525#0 1 1 76 70860 70935 [TTTTCATGTTAGACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTAC] HWI-EAS406:7:50:1763:639#0 1 1 76 70882 70957 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:5:52:15:1698#0 1 1 76 70894 70969 [ACTGATATGCTTTCCACATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTC] HWI-EAS406:6:1:212:802#0 1 1 76 70894 70969 [GCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGCACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAA] HWI-EAS406:6:46:878:1641#0 1 1 76 70941 71016 [TCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAA] HWI-EAS406:5:67:1116:707#0 1 1 76 71002 71077 [GATGCAGTATGAGATGCGAGGGCCTTTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCAC] HWI-EAS406:7:82:1452:1150#0 1 1 76 71026 71101 [AATCTTGCTGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAA] HWI-EAS406:7:14:1272:786#0 1 1 76 71111 71186 [TGGGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGA] HWI-EAS406:6:73:966:569#0 1 1 76 71119 71194 [TATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTTAAGACGCTAATGT] HWI-EAS406:6:23:116:1828#0 1 1 76 71128 71203 [AACACAACTCTCTTGTTGGTCACAATGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATA] HWI-EAS406:6:65:1248:1907#0 1 1 76 71236 71311 [TCATAGCAATCAGATAAAGCGAATTTTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCG] HWI-EAS406:7:71:632:736#0 1 1 76 71296 71371 [TTGAAGGTTCCCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAA] HWI-EAS406:6:14:583:1629#0 1 1 76 71321 71396 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71460-71625] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/71712-72235] There are [9] sequences in this contig [CAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCA] HWI-EAS406:6:74:340:1085#0 1 1 76 71712 71787 [GATTTCTAATTCTCTCCAAAGCGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATC] HWI-EAS406:6:69:273:955#0 1 1 76 71730 71805 [CCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAAAAAATCCAAT] HWI-EAS406:7:76:136:1326#0 1 1 76 71755 71830 [TCCAATTCCATCAACAGTCAATGAGAAAAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCC] HWI-EAS406:6:4:1341:1767#0 1 1 76 71794 71869 [TTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCT] HWI-EAS406:6:73:657:928#0 1 1 76 71845 71920 [GAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAACCCTAAGATACCATTTTGTCGGGCACTCTCTACAGGC] HWI-EAS406:6:69:608:788#0 1 1 76 71851 71926 [TACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACACCCTGTGCTAGGGC] HWI-EAS406:7:39:1441:509#0 1 1 76 71898 71973 [CCTGATACCCCGAAGGCAACACCCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCC] HWI-EAS406:5:42:630:1855#0 1 1 76 71939 72014 [TAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAGCCAATGTTGAGCTAGTCATACCCAAA] HWI-EAS406:7:3:247:1105#0 1 1 76 72121 72196 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72334-72409] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/7238-7313] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72551-72721] There are [3] sequences in this contig [GACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACAACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAA] HWI-EAS406:5:63:280:2016#0 1 1 76 72551 72626 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:684:1767#0 1 1 76 72623 72698 [CTAATCTACCATGAAATGGAACCACGTATCCATAGTTAGTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAG] HWI-EAS406:6:73:687:1768#0 1 1 76 72623 72698 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/72764-72920] There are [3] sequences in this contig [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:58:933:1075#0 1 1 76 72764 72839 [GAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTT] HWI-EAS406:7:96:138:1491#0 1 1 76 72764 72839 [GACAAAATCGGGCTCCAAACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCC] HWI-EAS406:5:32:1193:610#0 1 1 76 72783 72858 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73189-73264] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/73618-73693] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/74319-74394] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75333-75500] There are [3] sequences in this contig [GCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCATTTTTCTTATTTCGAAATG] HWI-EAS406:6:62:1449:2033#0 1 1 76 75333 75408 [TCGTCATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAA] HWI-EAS406:6:48:1707:1089#0 1 1 76 75384 75459 [CATTTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAGTGT] HWI-EAS406:7:65:460:691#0 1 1 76 75388 75463 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/75502-75924] There are [5] sequences in this contig [CATAGATTCTGATCATCTTCGTCAAAACTTTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCT] HWI-EAS406:5:59:1508:1093#0 1 1 76 75502 75577 [AACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAA] HWI-EAS406:5:58:256:560#0 1 1 76 75611 75686 [AAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGAC] HWI-EAS406:5:46:1388:1875#0 1 1 76 75627 75702 [GAAGACCTTCCAGTGGCAGAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAG] HWI-EAS406:7:17:923:1142#0 1 1 76 75653 75728 [AATGTGTTCCTAGCTGATGTGAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCA] HWI-EAS406:5:81:885:1582#0 1 1 76 75791 75866 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76023-76205] There are [2] sequences in this contig [GTATATCTTTAGCGATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACT] HWI-EAS406:6:79:1647:121#0 1 1 76 76077 76152 [TTATTATGTCCGGGAGAAGTACTGCTTATCTGAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATAC] HWI-EAS406:7:47:560:1036#0 1 1 76 76130 76205 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76211-76536] There are [5] sequences in this contig [TCAGACTCTGATTCACAAGCAACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCAT] HWI-EAS406:5:49:1688:659#0 1 1 76 76211 76286 [AACTCCAAGAATATTCAGAACCATCAGTCATTACACACTTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCC] HWI-EAS406:5:45:1087:1438#0 1 1 76 76263 76338 [ACAAGGGAACCGGTAATATATCGCCAGGCTTCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTC] HWI-EAS406:5:76:620:1542#0 1 1 76 76341 76416 [ATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGA] HWI-EAS406:5:25:1291:1892#0 1 1 76 76390 76465 [TGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTCAGTATTGTTTTCCACTGAAACTAGAGAC] HWI-EAS406:6:94:1284:238#0 1 1 76 76393 76468 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76543-76712] There are [2] sequences in this contig [GCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCCAAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATT] HWI-EAS406:6:32:835:791#0 1 1 76 76547 76622 [GATTTTCCTTGCTCCACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTT] HWI-EAS406:7:47:562:1860#0 1 1 76 76637 76712 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/76854-76955] There are [2] sequences in this contig [CAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTG] HWI-EAS406:7:59:843:1966#0 1 1 76 76863 76938 [CCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGTATTGGTTGTCCTTCATATATCGTGC] HWI-EAS406:6:30:986:1830#0 1 1 76 76880 76955 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77243-77318] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77350-77456] There are [2] sequences in this contig [ATGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAG] HWI-EAS406:6:2:544:249#0 1 1 76 77350 77425 [AGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCCAGCAGTATTCAGGGGATAAAATAAACATTAGGCCAA] HWI-EAS406:7:9:136:308#0 1 1 76 77381 77456 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77795-77870] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/77917-77992] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/78794-78971] There are [3] sequences in this contig [GCCATTATTTTCACGCAGATAAGTACGCCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAA] HWI-EAS406:7:65:1503:1068#0 1 1 76 78794 78869 [CCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCCAATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCA] HWI-EAS406:7:74:546:1750#0 1 1 76 78856 78931 [CTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAATCTCCTTGGTGG] HWI-EAS406:7:58:577:1389#0 1 1 76 78896 78971 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79009-79502] There are [9] sequences in this contig [TCATTGCCTATGCCCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAG] HWI-EAS406:6:94:925:835#0 1 1 76 79009 79084 [CCCATATACTAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACC] HWI-EAS406:5:25:1538:777#0 1 1 76 79022 79097 [TCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGCTACCATATCGCTAC] HWI-EAS406:6:54:1199:1064#0 1 1 76 79039 79114 [CTTCAGCAAAACGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGA] HWI-EAS406:6:30:384:1985#0 1 1 76 79079 79154 [CGATCACCAGCTACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATG] HWI-EAS406:7:50:1278:1079#0 1 1 76 79090 79165 [CAACACAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTTT] HWI-EAS406:6:32:1409:445#0 1 1 76 79166 79241 [TCCAGAAAGATATACTTTCAACTCCTCTGTGTTTCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAG] HWI-EAS406:5:40:817:1242#0 1 1 76 79208 79283 [TAATTAACATGCACCTTGCCACCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAAC] HWI-EAS406:7:59:1471:766#0 1 1 76 79360 79435 [ATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAAATAAGCCATCCCCTCAGTAATGATTGGTCTC] HWI-EAS406:5:27:1356:1536#0 1 1 76 79406 79481 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/79560-79686] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80173-80264] There are [2] sequences in this contig [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:40:61:86#0 1 1 76 80173 80248 [AGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACAAGGGGATACGGAAGAAGCTAGAATGCAG] HWI-EAS406:7:84:334:829#0 1 1 76 80173 80248 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80381-80456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80474-80593] There are [2] sequences in this contig [CCTTTAGTAGGTGGTTTGTCCCTGCCATGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTA] HWI-EAS406:7:31:547:1433#0 1 1 76 80474 80549 [TGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGATGACTAACAATGGTGTCAAATAGT] HWI-EAS406:7:51:987:613#0 1 1 76 80518 80593 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/80693-80806] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81002-81160] There are [6] sequences in this contig [CAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGATAAAACTATGAACAACA] HWI-EAS406:7:8:677:936#0 1 1 76 81002 81077 [AGAAGGAAAGACGATAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACT] HWI-EAS406:5:55:1278:821#0 1 1 76 81047 81122 [AAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAA] HWI-EAS406:6:7:456:1419#0 1 1 76 81063 81138 [ACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACA] HWI-EAS406:7:66:679:662#0 1 1 76 81065 81140 [GATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGA] HWI-EAS406:7:11:328:1615#0 1 1 76 81078 81153 [AAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTCAGCTCTAACAGTAATATCACGGAGAAGCCA] HWI-EAS406:5:72:1783:898#0 1 1 76 81085 81160 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81206-81367] There are [2] sequences in this contig [AGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCCTGCAGCAGCGG] HWI-EAS406:7:41:368:198#0 1 1 76 81206 81281 [TCTGGGCCGATAGCCTGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCC] HWI-EAS406:5:63:1251:970#0 1 1 76 81256 81331 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81438-81567] There are [3] sequences in this contig [TGTTTGGGGACTTTATGATATTCTTCCAACACAACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCA] HWI-EAS406:6:49:1020:1226#0 1 1 76 81449 81524 [CCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCAT] HWI-EAS406:7:59:585:870#0 1 1 76 81489 81564 [CTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGGCCATTCTTGATCATAAT] HWI-EAS406:6:69:1662:1635#0 1 1 76 81492 81567 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81782-81899] There are [4] sequences in this contig [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:57:1435:640#0 1 1 76 81793 81868 [TCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAG] HWI-EAS406:5:70:465:1192#0 1 1 76 81793 81868 [CAACAATTAAAGGACCCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGAC] HWI-EAS406:5:9:917:255#0 1 1 76 81809 81884 [CCAGAGGAGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATT] HWI-EAS406:7:86:763:397#0 1 1 76 81824 81899 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/81934-82330] There are [9] sequences in this contig [ACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATAC] HWI-EAS406:5:7:1488:1277#0 1 1 76 81934 82009 [GGACAAAAAACTCTACTTCGGCCAGTAGAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAAC] HWI-EAS406:5:39:1072:726#0 1 1 76 81944 82019 [ATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCA] HWI-EAS406:5:29:1064:1350#0 1 1 76 81975 82050 [GCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGG] HWI-EAS406:6:46:915:308#0 1 1 76 81992 82067 [TTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCT] HWI-EAS406:7:73:614:1639#0 1 1 76 82001 82076 [GGAAACAAAAGTTGACGACTGACCGAATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCG] HWI-EAS406:7:7:475:933#0 1 1 76 82014 82089 [AATTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATC] HWI-EAS406:7:4:976:1341#0 1 1 76 82039 82114 [AAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTTAATCTCTGATCTCCA] HWI-EAS406:7:92:1125:1958#0 1 1 76 82050 82125 [CCTACAGCAAGTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAA] HWI-EAS406:7:61:1097:746#0 1 1 76 82171 82246 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82392-82467] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82759-82857] There are [2] sequences in this contig [TATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGC] HWI-EAS406:7:74:1207:352#0 1 1 76 82759 82834 [CAATTGAAATGAATGGAACATGGAAAGCGGACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACA] HWI-EAS406:5:55:744:216#0 1 1 76 82782 82857 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/82919-83082] There are [3] sequences in this contig [TTCAGTTTGAGCAGCATTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCA] HWI-EAS406:5:71:1520:1633#0 1 1 76 82919 82994 [TTAGGATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGG] HWI-EAS406:6:68:737:221#0 1 1 76 82935 83010 [ATCCTCGGAAGTAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGC] HWI-EAS406:5:50:1274:668#0 1 1 76 82940 83015 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83150-83237] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/83601-83697] There are [3] sequences in this contig [TCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAA] HWI-EAS406:7:47:909:638#0 1 1 76 83601 83676 [ACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGT] HWI-EAS406:5:57:263:916#0 1 1 76 83607 83682 [GAGAATTCATGGGACCAGTAACTAATATAACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATC] HWI-EAS406:5:56:421:1257#0 1 1 76 83622 83697 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84236-84447] There are [4] sequences in this contig [ATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGA] HWI-EAS406:5:97:1523:1879#0 1 1 76 84236 84311 [ATATGGTTGTCTGGGAGGCTGTCATCACTGATTCGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGA] HWI-EAS406:6:51:787:579#0 1 1 76 84248 84323 [GCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTACGGAATACCTTGGATATTGATAGT] HWI-EAS406:5:11:1432:1580#0 1 1 76 84299 84374 [AGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAAAAGTATAATCTAACCTTAATATCTGTT] HWI-EAS406:7:56:662:2012#0 1 1 76 84372 84447 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/84452-84888] There are [7] sequences in this contig [GACAATGTCGCAAACTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGA] HWI-EAS406:5:73:271:319#0 1 1 76 84463 84538 [CTTAGTTCCATTCTCATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGAT] HWI-EAS406:7:60:710:960#0 1 1 76 84477 84552 [CATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAA] HWI-EAS406:5:43:480:1536#0 1 1 76 84519 84594 [TAGATTTCCCCTTCCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACT] HWI-EAS406:5:40:1113:280#0 1 1 76 84548 84623 [AAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAG] HWI-EAS406:7:53:1638:399#0 1 1 76 84568 84643 [AGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCA] HWI-EAS406:5:19:278:1957#0 1 1 76 84579 84654 [CTTTTCGGTGAACTTTGCTCTCCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGA] HWI-EAS406:5:12:647:1325#0 1 1 76 84610 84685 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85154-85229] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/85786-85861] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86083-86165] There are [2] sequences in this contig [TTCGAGAAGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTT] HWI-EAS406:7:98:985:875#0 1 1 76 86083 86158 [AGCATTGCGAATGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGT] HWI-EAS406:7:27:843:73#0 1 1 76 86090 86165 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86285-86406] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/86740-87073] There are [6] sequences in this contig [TTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATG] HWI-EAS406:6:50:544:1942#0 1 1 76 86740 86815 [AAAAGGACCAACTAAACATAAGTACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAAT] HWI-EAS406:5:24:899:1507#0 1 1 76 86778 86853 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:5:27:651:758#0 1 1 76 86889 86964 [AACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGTAAAGACAACCAACCCTCAAAATCA] HWI-EAS406:7:36:939:388#0 1 1 76 86889 86964 [CAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAA] HWI-EAS406:6:44:1640:635#0 1 1 76 86963 87038 [AAGAATGTGAGAGCCCTCATCATCCTTAGTTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGT] HWI-EAS406:5:21:792:990#0 1 1 76 86982 87057 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87100-87175] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87411-87579] There are [5] sequences in this contig [GTTCACGCTTATAGTCGTCCTGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCAT] HWI-EAS406:5:40:963:792#0 1 1 76 87411 87486 [TTTAGAAAATTCAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAG] HWI-EAS406:5:29:1062:180#0 1 1 76 87468 87543 [CAAATCATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGT] HWI-EAS406:6:33:1466:1038#0 1 1 76 87479 87554 [ATATTGTTAAAAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAA] HWI-EAS406:6:74:560:575#0 1 1 76 87485 87560 [AAAAGTTGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT] HWI-EAS406:7:36:1097:534#0 1 1 76 87495 87570 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/87843-87918] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88084-88247] There are [3] sequences in this contig [CAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAA] HWI-EAS406:5:28:328:364#0 1 1 76 88084 88159 [ACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATTGTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAAT] HWI-EAS406:7:46:1492:580#0 1 1 76 88096 88171 [TCCATCAATAGAGTCCTTCAGATACTGCAGGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATA] HWI-EAS406:6:28:859:934#0 1 1 76 88172 88247 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88301-88432] There are [2] sequences in this contig [TTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGG] HWI-EAS406:7:81:841:1025#0 1 1 76 88301 88376 [CAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTTATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGC] HWI-EAS406:7:15:996:61#0 1 1 76 88304 88379 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88501-88726] There are [4] sequences in this contig [GCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCTTAATGGAGCAATTAAGATCTTCACAT] HWI-EAS406:5:44:57:1786#0 1 1 76 88501 88576 [TAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGAAGCATTACGCCTCATGTGTACCTCCAAGAATGTA] HWI-EAS406:7:54:1671:598#0 1 1 76 88579 88654 [TACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCT] HWI-EAS406:6:1:546:1653#0 1 1 76 88639 88714 [TGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGACTGCTCATCACCTTCTTTGTACCCTATGACTTTATTT] HWI-EAS406:6:95:686:1267#0 1 1 76 88651 88726 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/88728-89026] There are [7] sequences in this contig [TCCCAATCTTCATCGGTGAATTGAACAGATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATAC] HWI-EAS406:5:76:1379:738#0 1 1 76 88733 88808 [AGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTG] HWI-EAS406:7:31:1487:604#0 1 1 76 88854 88929 [TTCACCCTCCAAACGGCCACCATGAACTTTTAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTC] HWI-EAS406:5:48:1276:1279#0 1 1 76 88870 88945 [TAGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAA] HWI-EAS406:6:61:58:1492#0 1 1 76 88900 88975 [GTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAAT] HWI-EAS406:7:67:1335:152#0 1 1 76 88906 88981 [GCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGA] HWI-EAS406:5:96:791:1904#0 1 1 76 88929 89004 [ACTTGTGGGCCAACATCCTTCATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTA] HWI-EAS406:6:46:1014:1849#0 1 1 76 88951 89026 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/8886-8961] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89272-89444] There are [2] sequences in this contig [ACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTA] HWI-EAS406:5:46:1549:1266#0 1 1 76 89272 89347 [ACGCGTAATGTATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGG] HWI-EAS406:7:42:1654:231#0 1 1 76 89310 89385 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89473-89625] There are [2] sequences in this contig [CTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAA] HWI-EAS406:5:54:722:1131#0 1 1 76 89549 89624 [TCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGATGGACGGTAATGTGCATATTTCAAA] HWI-EAS406:5:47:1791:1774#0 1 1 76 89550 89625 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/89972-90047] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/90365-90440] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91000-91075] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/91078-91153] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92058-92240] There are [3] sequences in this contig [ATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTAGAGAGCGGATGGA] HWI-EAS406:6:64:403:2030#0 1 1 76 92058 92133 [GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTAGGAGGA] HWI-EAS406:6:73:248:1987#0 1 1 76 92121 92196 [ATCGTTTCCTCAAGAACACGCAAGTAGGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACG] HWI-EAS406:5:52:985:957#0 1 1 76 92165 92240 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/92249-92456] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95489-95564] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/95826-96392] There are [46] sequences in this contig [ATGTTAGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCA] HWI-EAS406:5:51:460:1579#0 1 1 76 95826 95901 [TTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAG] HWI-EAS406:5:51:996:890#0 1 1 76 95836 95911 [TTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAA] HWI-EAS406:6:44:424:582#0 1 1 76 95838 95913 [CCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTAC] HWI-EAS406:7:55:1683:1558#0 1 1 76 95847 95922 [AAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAA] HWI-EAS406:5:37:874:1703#0 1 1 76 95855 95930 [AAGATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAAT] HWI-EAS406:7:60:861:1898#0 1 1 76 95871 95946 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:5:45:983:1815#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:6:50:725:1008#0 1 1 76 95873 95948 [GATTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGA] HWI-EAS406:7:47:1467:1449#0 1 1 76 95873 95948 [TTGTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATT] HWI-EAS406:5:75:1577:1211#0 1 1 76 95875 95950 [GTCGAACCAGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTA] HWI-EAS406:5:62:1054:483#0 1 1 76 95877 95952 [AGTTCTGAGGGATATCAAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTT] HWI-EAS406:5:3:1196:1080#0 1 1 76 95885 95960 [AGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAAC] HWI-EAS406:6:35:243:859#0 1 1 76 95903 95978 [GCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACT] HWI-EAS406:7:48:1680:776#0 1 1 76 95904 95979 [CAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAA] HWI-EAS406:5:84:623:1401#0 1 1 76 95916 95991 [AATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTT] HWI-EAS406:6:48:520:969#0 1 1 76 95929 96004 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:6:40:230:1515#0 1 1 76 95931 96006 [TCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTC] HWI-EAS406:7:47:1458:1361#0 1 1 76 95931 96006 [AAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTG] HWI-EAS406:7:54:1184:624#0 1 1 76 95934 96009 [TTTAAGCTATGACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGC] HWI-EAS406:7:97:1095:736#0 1 1 76 95960 96035 [ACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTG] HWI-EAS406:5:51:1023:405#0 1 1 76 95977 96052 [TAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGG] HWI-EAS406:5:43:1053:715#0 1 1 76 95979 96054 [GCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCA] HWI-EAS406:5:48:1136:1031#0 1 1 76 95985 96060 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:5:62:1323:303#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:6:74:656:1327#0 1 1 76 95988 96063 [ATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGT] HWI-EAS406:7:47:1713:1453#0 1 1 76 95988 96063 [CAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCG] HWI-EAS406:6:57:630:1897#0 1 1 76 95992 96067 [AGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGA] HWI-EAS406:5:56:425:941#0 1 1 76 95993 96068 [GAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAA] HWI-EAS406:6:48:1251:976#0 1 1 76 95994 96069 [GATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAA] HWI-EAS406:7:21:585:1306#0 1 1 76 95998 96073 [ACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGA] HWI-EAS406:5:50:1455:1115#0 1 1 76 96001 96076 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:6:53:1165:1068#0 1 1 76 96003 96078 [TTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATG] HWI-EAS406:7:1:1156:1978#0 1 1 76 96003 96078 [CTTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCA] HWI-EAS406:6:56:1607:1792#0 1 1 76 96006 96081 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:9:654:271#0 1 1 76 96007 96082 [TTGACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAA] HWI-EAS406:6:57:146:739#0 1 1 76 96007 96082 [GACTAAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAAT] HWI-EAS406:5:85:313:1610#0 1 1 76 96009 96084 [AAGGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATC] HWI-EAS406:6:21:399:708#0 1 1 76 96013 96088 [GGGAAAAGAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAA] HWI-EAS406:6:50:324:503#0 1 1 76 96015 96090 [GAGAATTCATGGGCATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACT] HWI-EAS406:5:48:349:1571#0 1 1 76 96022 96097 [ATAGGGATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCC] HWI-EAS406:7:41:1353:676#0 1 1 76 96036 96111 [ATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGCCTAGACA] HWI-EAS406:6:93:442:832#0 1 1 76 96042 96117 [ACTATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTC] HWI-EAS406:6:53:189:1605#0 1 1 76 96095 96170 [ATCAACCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAA] HWI-EAS406:5:25:842:1349#0 1 1 76 96098 96173 [CCTTAAGCCTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCA] HWI-EAS406:7:49:569:1689#0 1 1 76 96103 96178 [ATTTCATCGAACACCTTTCGGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATG] HWI-EAS406:6:48:573:424#0 1 1 76 96302 96377 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96546-96743] There are [41] sequences in this contig [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:5:59:464:1284#0 1 1 76 96549 96624 [TAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATT] HWI-EAS406:6:30:208:1363#0 1 1 76 96549 96624 [CAAAAGGTGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAA] HWI-EAS406:5:39:1300:1111#0 1 1 76 96571 96646 [TGATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAA] HWI-EAS406:7:52:386:1253#0 1 1 76 96578 96653 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:35:1367:1803#0 1 1 76 96580 96655 [ATTACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGA] HWI-EAS406:5:39:947:220#0 1 1 76 96580 96655 [ACTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAAT] HWI-EAS406:7:26:1194:1131#0 1 1 76 96583 96658 [CTCACTAATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATC] HWI-EAS406:7:7:1501:844#0 1 1 76 96584 96659 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:5:54:130:722#0 1 1 76 96590 96665 [AATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAAT] HWI-EAS406:7:26:1334:829#0 1 1 76 96590 96665 [ATCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATA] HWI-EAS406:5:39:225:226#0 1 1 76 96591 96666 [TCTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAA] HWI-EAS406:5:25:1166:904#0 1 1 76 96592 96667 [CTCCATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAAC] HWI-EAS406:5:72:728:1108#0 1 1 76 96593 96668 [ATGATTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAA] HWI-EAS406:7:97:1596:710#0 1 1 76 96597 96672 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:6:77:1297:372#0 1 1 76 96603 96678 [CCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACAT] HWI-EAS406:7:60:325:1845#0 1 1 76 96603 96678 [CTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATA] HWI-EAS406:6:46:1493:1364#0 1 1 76 96604 96679 [CTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAAC] HWI-EAS406:6:97:1626:350#0 1 1 76 96606 96681 [TTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACA] HWI-EAS406:6:89:439:326#0 1 1 76 96607 96682 [CCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAA] HWI-EAS406:5:52:846:1834#0 1 1 76 96612 96687 [CATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAA] HWI-EAS406:7:27:1352:654#0 1 1 76 96614 96689 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:5:12:18:1692#0 1 1 76 96615 96690 [ATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAAT] HWI-EAS406:6:79:1502:1763#0 1 1 76 96615 96690 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:6:20:1277:1200#0 1 1 76 96618 96693 [TTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCA] HWI-EAS406:7:20:482:1782#0 1 1 76 96618 96693 [GATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGA] HWI-EAS406:5:88:761:589#0 1 1 76 96621 96696 [TTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGAT] HWI-EAS406:7:71:96:562#0 1 1 76 96624 96699 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:5:84:1251:1593#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:6:39:612:1266#0 1 1 76 96626 96701 [CAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGA] HWI-EAS406:7:29:339:747#0 1 1 76 96626 96701 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:5:35:237:1240#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:6:136:1637#0 1 1 76 96628 96703 [GATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAAC] HWI-EAS406:7:19:1295:156#0 1 1 76 96628 96703 [ATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACT] HWI-EAS406:7:32:520:1318#0 1 1 76 96629 96704 [TAATCATGTAGAGAAATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTC] HWI-EAS406:7:88:48:1089#0 1 1 76 96631 96706 [ATAGATAAGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTG] HWI-EAS406:6:38:866:435#0 1 1 76 96646 96721 [AGAAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTT] HWI-EAS406:6:21:273:2005#0 1 1 76 96653 96728 [AAATCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCT] HWI-EAS406:6:65:1490:908#0 1 1 76 96655 96730 [TCAACAATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAA] HWI-EAS406:7:83:681:1286#0 1 1 76 96658 96733 [ATAACACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATC] HWI-EAS406:5:17:710:1002#0 1 1 76 96664 96739 [CACAAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCCAAA] HWI-EAS406:6:63:971:1449#0 1 1 76 96668 96743 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/96752-97468] There are [78] sequences in this contig [CCAAGTGCAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGG] HWI-EAS406:7:98:1610:812#0 1 1 76 96801 96876 [CAAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACT] HWI-EAS406:7:24:560:1540#0 1 1 76 96808 96883 [AAAACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTT] HWI-EAS406:6:22:463:1392#0 1 1 76 96809 96884 [TAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTC] HWI-EAS406:6:25:466:1248#0 1 1 76 96822 96897 [AAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCC] HWI-EAS406:7:90:205:1555#0 1 1 76 96823 96898 [GCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAA] HWI-EAS406:6:27:1215:637#0 1 1 76 96828 96903 [AAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTC] HWI-EAS406:5:69:143:474#0 1 1 76 96831 96906 [CTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGG] HWI-EAS406:7:2:646:1440#0 1 1 76 96839 96914 [AAAATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAG] HWI-EAS406:6:69:1608:993#0 1 1 76 96865 96940 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:6:1:1134:1601#0 1 1 76 96867 96942 [AATAACGCGGAGCGACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAG] HWI-EAS406:7:27:1186:269#0 1 1 76 96867 96942 [GACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACT] HWI-EAS406:6:47:1520:1770#0 1 1 76 96880 96955 [GCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGT] HWI-EAS406:7:2:1474:1109#0 1 1 76 96885 96960 [GGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACG] HWI-EAS406:6:5:1509:1517#0 1 1 76 96899 96974 [GGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGG] HWI-EAS406:7:33:201:1509#0 1 1 76 96900 96975 [TCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTG] HWI-EAS406:6:63:690:1073#0 1 1 76 96909 96984 [TTTTGGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGA] HWI-EAS406:6:63:980:824#0 1 1 76 96921 96996 [GGTGTCTCCGGGCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTT] HWI-EAS406:6:74:319:1980#0 1 1 76 96925 97000 [GCGAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCT] HWI-EAS406:7:15:1248:709#0 1 1 76 96936 97011 [GAGAGGTCGCGAGCGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCC] HWI-EAS406:5:27:1278:665#0 1 1 76 96938 97013 [GGCTTCGCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG] HWI-EAS406:5:16:1197:1307#0 1 1 76 97015 97090 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:12:498:898#0 1 1 76 97055 97130 [CCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAG] HWI-EAS406:5:15:449:1383#0 1 1 76 97055 97130 [TCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGT] HWI-EAS406:7:12:886:602#0 1 1 76 97057 97132 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:5:72:551:2005#0 1 1 76 97059 97134 [GGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCG] HWI-EAS406:7:54:1622:833#0 1 1 76 97059 97134 [TGTCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCC] HWI-EAS406:6:15:617:645#0 1 1 76 97063 97138 [TCGCTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGG] HWI-EAS406:6:71:1065:1848#0 1 1 76 97065 97140 [CTTTGGGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCT] HWI-EAS406:5:21:1187:208#0 1 1 76 97068 97143 [GGAGGTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTC] HWI-EAS406:6:74:1088:195#0 1 1 76 97073 97148 [GTCGCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGC] HWI-EAS406:5:79:1567:1339#0 1 1 76 97077 97152 [GCTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTC] HWI-EAS406:6:63:1541:1622#0 1 1 76 97080 97155 [CTCCGAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCT] HWI-EAS406:5:62:1176:406#0 1 1 76 97081 97156 [GAGAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA] HWI-EAS406:7:29:1109:1686#0 1 1 76 97085 97160 [GAGGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGT] HWI-EAS406:6:76:1137:734#0 1 1 76 97087 97162 [GGGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGA] HWI-EAS406:5:17:466:948#0 1 1 76 97089 97164 [GGGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGAT] HWI-EAS406:5:48:1356:1247#0 1 1 76 97090 97165 [GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATG] HWI-EAS406:5:76:713:1442#0 1 1 76 97091 97166 [TGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAAC] HWI-EAS406:7:9:1331:1496#0 1 1 76 97095 97170 [AGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCG] HWI-EAS406:6:40:1350:738#0 1 1 76 97097 97172 [ATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCG] HWI-EAS406:6:49:1132:1723#0 1 1 76 97099 97174 [GCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAG] HWI-EAS406:6:25:1330:1345#0 1 1 76 97101 97176 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:8:1401:420#0 1 1 76 97106 97181 [CGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACT] HWI-EAS406:6:9:1271:618#0 1 1 76 97106 97181 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:3:1199:1835#0 1 1 76 97111 97186 [TCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCC] HWI-EAS406:5:52:610:424#0 1 1 76 97111 97186 [TGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTG] HWI-EAS406:7:4:1026:1717#0 1 1 76 97114 97189 [TGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCG] HWI-EAS406:7:28:1674:1087#0 1 1 76 97117 97192 [TCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCT] HWI-EAS406:5:15:1212:1925#0 1 1 76 97119 97194 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:5:2:608:141#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:523:1013#0 1 1 76 97120 97195 [CGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTC] HWI-EAS406:7:21:524:1015#0 1 1 76 97120 97195 [GCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCT] HWI-EAS406:6:2:776:1475#0 1 1 76 97121 97196 [CGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTA] HWI-EAS406:6:90:484:209#0 1 1 76 97125 97200 [GAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGG] HWI-EAS406:7:68:506:1429#0 1 1 76 97128 97203 [CGCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCT] HWI-EAS406:5:64:801:1492#0 1 1 76 97133 97208 [GCTCCGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTC] HWI-EAS406:7:30:1512:839#0 1 1 76 97134 97209 [CGGGCTCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAAT] HWI-EAS406:6:82:42:1860#0 1 1 76 97138 97213 [TCGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGA] HWI-EAS406:5:21:576:1666#0 1 1 76 97143 97218 [CGTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAA] HWI-EAS406:7:67:976:1926#0 1 1 76 97144 97219 [GTTCTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAG] HWI-EAS406:7:72:284:1217#0 1 1 76 97145 97220 [CTCGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCA] HWI-EAS406:6:90:1324:603#0 1 1 76 97148 97223 [CGCGTCTCCGAGTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGA] HWI-EAS406:7:55:648:1548#0 1 1 76 97150 97225 [TGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGT] HWI-EAS406:5:68:541:1504#0 1 1 76 97165 97240 [AAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCG] HWI-EAS406:5:33:1462:1304#0 1 1 76 97167 97242 [AACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGC] HWI-EAS406:6:39:296:1568#0 1 1 76 97168 97243 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:4:379:1940#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:6:23:160:476#0 1 1 76 97172 97247 [GCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCG] HWI-EAS406:7:95:818:1496#0 1 1 76 97172 97247 [CGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGG] HWI-EAS406:5:71:1012:1264#0 1 1 76 97173 97248 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:5:47:1098:608#0 1 1 76 97179 97254 [ACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGT] HWI-EAS406:7:9:1400:1506#0 1 1 76 97179 97254 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:22:853:1626#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:5:59:731:114#0 1 1 76 97180 97255 [CTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTC] HWI-EAS406:7:99:1783:1300#0 1 1 76 97180 97255 [TCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCAC] HWI-EAS406:7:17:1109:924#0 1 1 76 97182 97257 [CCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCC] HWI-EAS406:7:35:510:222#0 1 1 76 97185 97260 [CCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGACTTGGTGGTGTCGCTCCGGACTGGTCACTCCA] HWI-EAS406:6:51:1260:1409#0 1 1 76 97186 97261 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/97747-97908] There are [2] sequences in this contig [TGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAGTCCCTAAAACCTGCAAGAAAGTCAGCTACACC] HWI-EAS406:5:85:282:494#0 1 1 76 97747 97822 [ACTACGGCGCCGGGATGTGAGCATTGACGAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGC] HWI-EAS406:6:84:640:795#0 1 1 76 97833 97908 CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/98348-98423] There are [0] sequences in this contig CONTIG [sam_assy[KBrB056G23_vs_Bna_03_002_paired:AC189398-KBrB056G23]/99899-99974] There are [0] sequences in this contig -------------- next part -------------- A non-text attachment was scrubbed... Name: assembly_test.pl Type: application/x-perl Size: 762 bytes Desc: not available URL: -------------- next part -------------- >AC189398-KBrB056G23 ACTCTCGTGATGATCCACGTTGAAAACAGAGGATGATACTTCGAGAATCTTAGGCACATAGGGATGAGGG TTATGAGTATTGTTATTGCTTTCTCCTCCTCCTTCGTAGTTCCGGCGGCTGAAGAGGCCGTAGGAGACGG CGATGCCGACGAAAATCATATGGAGAAGCTCGAGGAGTCTGGTTTGGTTAGCGAGCTCAGGCGTCTGAGA AAGGAAGACTGGTACGAGGGAGCATAACAGGGCGAGGATTAGGGCTTTGAAGAGGAATCGAGAGGAGAAT TTTCTAGGGTTTTGAGCTTCTTTGTCACCCGATTGAGTTGTTTTCTTCGAGCTTCTTGTTGTTTCCACCA TTAGAGAGAAAGTAAGTTGTACTTTAGGTTGGTGATGAAAGATGGTTTGAAAATACGATTAAAAGACCAA AGTTAGTGGAAGTGCTAAGACTTCAAGGTTAAGTTCTGTTTTTTTTTTCTTGGTGTTTAGAAAAAAATAT GAGAAGAAGAAAGAGATTGAAGAGAACAAGATCTGATGTCCAAGTTGATGTGTGAATTCATTCCCAACTT TACTTTTTTGGGTTTCTGATACTATTCTAACGTTATTTTTGATGGTTGACAGCGACTGGAGAATCGCTCT GTGGAACGGAACATCCAAATGTTGATTACATTGAAGGTTTGCAGTTTGTTTTTTTTTTCAAATATGACTT AAAACAAAAAGTGAACCACAAAACTAGCTCATGATTCTTTTTGGAATTTTCATTTGGCATATTCATTTCA AAAGTTTGGATTATTCACGAAAATACTATTATTTTTTCTTCCGAAAATGAGTATTTTACTCTATTATATC ATTTTCATCATGTATTTACAATATTACCATTGCAATCAGTACCAATCCACCATGAACAACCAATTTGAAG CTTTTAATGCACCAAAGTTTCGATTTTTACCCTTCATATCTCATTACTTATGCATACAAATTACATCTCT TTCATTTTTTCTCTATATTCATCAAAAAAACCAAGATTTTGATTCTAAACTTTGTAAAGTTCAAACTCAT AATTCTTGGTCATTAACAAGTGGGTTTGTTTCATGGTGAAATAATATGTGATAGAAGAAGCTAATTAAGT TATCTCGTTGGTTGAAAGTATGAAACTAATTTTTTTCCAGATTTGTTCGTCGGAAGACTTCCGTCTAAGT TTTCTCGTCGTAGAAGACTTATACGGAAATCTTATCTTCAATACATAGGTTAATTTTGCAATTGACTTTA AGTGTGTTTTTAGAGACGGCTTCTTTGGAAGTTAACACCAAAATCTCGAAAATACCAGAGAAGACTTTCT AGAAAGTCGTCTAGGATACACAAGTTAGTTTTGCAATTGACCGGATTATGACAGAATTTTGATGTTCTCT AGATAACTTACACGGAAGTCTTCCCTGTAAGTCTTCCGAACTCTCAGTAGAAGTCTCTTCACTGTCGATG AAAGTCGTCTCAGGTTATTTTTGCAATTGAAAAATAAAACTTAAATATTTAATTTTAATTAGACAAATTC CATGTAAGTCTTTCGGACTTTCGGTGGAAGTCTTCTCACTGTCGGTGAAAGTCATCTCGGTTTATTTTGT AATTGAAAAGTAAAACATTAAATATTTAATTTTAATTAGACAAATTCCATGTAAGTCTTCCGGGAGACGA CTTACACGAAAGTCTTCCAGAAATTTATTCCAAGATTCTGGTCAAACCTTGGTTATCACAGAAGAAATTC TGGTAAATCTTATGCCGGAAGACTTACATCGAAGTCGTCTAATTAAAATTAAATATTTAAGTTTTATTTG TCAATTGCAAAAGACATGAGACGACTTACATAGAAGTCGTCTTGATAAATGTAATCTTTAAGTTTAGTTT TTCTAGTGGAAGACTTCCATGTAAGTCTTCTAGAAAAAAATCAAATTTCTCACATAGTTCGGTCAATTGC AAAACTAACATGTTTATCCTAGAAGACTTATCGGTAAGTCTTCTCTGATATTTTTGAGATTTTTTCAAAA ACAAAAGTAAGCTGATATTTACAAAGGAAGACTTCCAAAGAAGTCTGCTGTAGAGTAGACTTCTATGGAA GTCTTCCTTTGTAAATTTTCAATTTCAAAAATGACCTAAATGGAAGACTTCCTAGAAGTCTTCCGGCAGA CGACTTCTGTGGAAGTCTTCTACGTCAATGTTTCATAAACTTTCATTTTCTCAAAAATTATAAATGCTTT TTAAAATTTTCTTGTTGATTCATGTATATTAATCGATATTAGGGTTGCTGAATAAAATACATAAATTAAT TGATTTTAATTATGAGGTTAGCAACATTCATGTTTATGAATGTTTTTAGCTAGTTCGAGAAGACTCTCAC ATTTTTTTTGTAAACTTATTAAGTAACTTTAAGATATTTTTTTAACTTTCAAAAGTGTCAAGTAACTTCA ATATTATCAAGTTTAATGGTTTAATATATCTTCTTAGATCATAAAATATACTTTTTAATTTTCATGAGAT TTAAAGTTTTAATTTTCACTTAAAATTTCCGCCTAAATTTTAATTTCCCTCTTAAATTTCCTGTTTACAT TTTATTTTTCCGCTTGAAATTTAAGTCTTCTGAGAAGATAAGCTTGAAAACAAAATTTATATGTTTTAGA AGATTCTTTCAGAAGGCTTCCATATTTTCAAATTTTCCCCCATCAAAATAATTTTAATAAAATTTATAAA TTATTTCTAAGATCTAGAGTATGAGAAGACTTCCTAGAAATCTTCTCCGAGAAGACTTATAAAGCCTCCA GAAAACTTCCAGGGGTTATATTCGTAAAAGAACATTCTGTCTATTTTTGTCATAAGGGATACTTGTAATT TCACTAGTTTTTTATGTTACTTTTGCATTTGATTCAAGTTGGGGGTACTCGAAACCTGAAACTTCTAGTA TATATTAAGTATATATGGGTGTTTCATTTTATTTTTGGTATTCTGGGTATTGTTTAAGTTTCAAATTTTA GTTTTTGGGTATGATTTTGGGTTTCAGATAAAAATTTAGATTTTCAAAAATATAATTCGGATAATCAGAT AAAACTTCAGATATTTTTCATGTCCTTGGATCAAATTTTAGAAAACATTTCTCATATTTACTCATATTTA AATATTTTCAGGTATTTTCTGTGTGTATTAGGTTTTTTTTGTTGGACCCGACATGACCCGAACCGAATCC GATCCGAAACCGAGCCGAATCGACAAACTCTAATTACCCTATTGGGTCCAACTATCTAAGTCCCGACCCG ACCCGGATCCGAGAAGACCCGAACCGAGAATTTCAAATTACCCTATCGGGTCTTAAACTCTTAGACCCGA AGGATCCGGACCCACAACGACTCCGATCCGAACCCGACTCGAGGACCCGAATGCCCAGGTCTACTGTTGA GTGCATCACTTGTGTTTTTTTAGAAGACTTCTACATGTACAAAGTGAATATCAACTAGTCGACCTTATTA GTAAGAACATATCTAACCCATCTTTACATTTTTTTTATATTTTCTTCTAAAATAAATAAATTATATTATA GAAGTGGATTTACTTTATTATATGTTTTTATATATAATCTTTGTATTTTAGACAGAAATATAGAAACGAT TTGAAAATGGTCTAAATCTTTTTACCAGAAAAACTTTCCTAACATCTGTGAAGATGAAAATATTAAAATA TTACTTTAGTTAGTTACTTTAGTTGATATAGTTTGGTCATTTTTGAAGGTTCATTTGGACTTGGGCCAAT TTGGTCTGGACAATTTGGTCTGATACAATTTGGGCTTAAAAAAATAATGTCCATTTGGACTGTTGTGTCC ATTTGGACAACCCATTTGGATTTGGGCAGTTCAATTGACGTCTCTAGCTGTGGACTCACTGGTCGGCTAC ATTTATTATCTCTCAAGCTTTTTCCTTTTACTCTATACTTCAAATTCGAGGAAACATTTCTGCAACTAAT AGAGATGACGTATAGATGAAACCAAGTTTAAGTTAATGTCTGATTTAAAACCATTAGCTTAAACTCATAG CAAAAGATAAAAGAGAAAAAAAAGAAGAAGAGAATTTGCTTAAATCATACGCACAATGTATATAACCATT GCTTTTAACTTGCATGATTGCATCCGAATTTAATTTTATTACAGCCAATGAATGCACAAATAGAACGAGT GATATTCAAATGTTTATTTTTACTTGGTTTCTGTGTCATACACATTATTATAATCCTAAACCATCCCGGT TCTTAACATCCAATACAATGGTTATCTCCCCCCGGTTATTGAAACTAAAAGAGCTTCACTTGCCAGTGTA ACGAGGCTTACGTTTCTCAGCAAACGCAGCTAATCCTTCCAGACGATCTTCAGTGTTTAGAAGCTTCTGA TAACACATATCCTCTAGCTCTAATCCTGAAGCCATATTCGTCTCTATTCCTTCATCAATCGCTTTCTTCG CCATCTTTATCGCCATTGGACCTTTCTCATTTATCTGCTGAGCCACTTCCATTGCTTTCTTATGAGCCTC ACCCGCCGCAACACAAAAGTTAACTAGCCCTACACGACAACAACAACAACAAAAAAGAGAGTATTAATAT AGGAAGACTTGAATTTGAAGACCTTTCCCTTGATGAACCAGAACTAGAGGCTGTTGTGTTTGATGGAGAA GATGAAGATGAGTAAAACAATTGATCTTTGACATTGAACGTTTTTATTTTTAGTTGTGTTGCTTGATATT TAATACTTTGCTGGATTTGTGTGGTTTAAAGTTTACACTTTTAATTTTCAGAATTTTATTTTATATGTGG GTTTATATGATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATA TACGCTTCCAATACGGATCCGCTTCCTAGTTTTTTGAAAAAAATCGTTTCTACGCTTCCATACGATTCCG CTTCCGCGTTTCCGCTTCCGTTTCCATGTAACGTAGGTATTAAGAATCATCCTCTATTTGGTGGGTGTAT ATGTCATAAAAAAACAAGTTCACAATTCAACTTTAATAGTCACAGACCTTTCTTTGCAGCTTCTCTTGCA TCAATCTTTCGACCAGTGAATATAAGTTCCTTTGAAACTGATCTTCCAACCAGCCTTGAGAGTCTCTGTG TCCCACCAGCACTGAATAGAAGCCGAGAGAAAGAAGAAATCATCAGAAGATTGATAAAATGGGGAGTCAT GGATGGAGCTTATAGTATATATATACCCAGGGATTACAGCGAGTCCTGTTTCAGGCAAACCAAATACTGC ATTTTCGCCTGAAATATCGAGCAAGAACTGGAGATTATAGCAGAAAGACTCTAAATAAGAAAAATGATGA CATGTGAAAATAGAATACCGCAGATTCGAAGATCACAGGATAAAGCCATTTCGAGTCCACCTCCTAGTGC CACACCTTCTATTGCAGCAATAGTTGGGATACTCAATGCCTAGAATACACAAGTCACTATTTATACATTC CTCTTCTCTTTTATATAAGTTCGAAGACTAATAAATTTTCCATATCTTGATAAAGTAAAAGTAAGTTTAC AAATGTAGTCGATTTGAAAAAGAGTTTGTTGAATAGGGATTAATACCTCTATGAAGGAGAACATGTAGCG CAAAGAGTTGACATATGTATGAACCTCAGATGGACTCATAGTTCTACGTTCCTGACATGGCAATAAATAA GTAAGAAATAAAACATACAAATTGTTTCAAGCATGGGTGACGAACCCTATTGAATACGAACATTCCAGAA AAACTACCTTGAGATCTGCACCTGCACAGAAAACTCCAGGAACCAGACTTGTGATCATCACAACTCTAGC GGAACTATCCTGATGTATGGTCTCAAATGTGTTCTGGAGACCTTTGAGCATCTCTTTATTAATGGAATTT TTGGCCACAGGCCTGTCTAGATTGACCTCGACAATCCCTGTAAATCAATCACAAACTCACATTAAGCACT GCTGCATTTGCCATCTTTCCTTTTGAATATTTTTGTGCAACACACAAAAAGGTCACCAGACCAGACATTA ATCCGACAGTAACAATGCTCAGACATCCAAAACACACACAAATAAGAAACAAAACGTGACTCAGATTTTC AGGACAATATCAAATTCAGACAAGATTCATTGGTGACTAAAAAAGGATTAACTAGAGAAGCAAATAACAC ATCCAACAACGGTATTAACTAACCCTAACAATAGAACCCAAAAATTACCAGAATCGGAACCAGAGAGACG GTTAAGCTTGACAGATTCAGGCAGAGCGGTTTCAATAATGAGAGTCCGGCAGGTTTGAAGCATGAAACTT CGGCTAAGAGATTGTTTTCCGGCTAACTGGAGCAAACTATCACGGCGGAGATACTTAACGAAGCTCATCT TCACCGTCTCTGACTCCAAAGTTTTGATTTTTAGTCCTGTTAGGTTGAAAATGACAGGCTTTACATTCCG GTTGTGTCAGTCCGTAGTGGTCAATGCTTATCCAACCAAGTTCTTTCTTTTTGGTTTGGGTTTCCGGTTC GGTTTTTTAAACTAAATTGAATCCGGTCTGATCCGGTTTGTGTTATTTACCGAGTTTTTCTTCTTACTAT GGAAGGAAGAATACAACAAGAAAAAAAAGAAAAGAGAGTGTTAATAGTACATTGTTTGTTGGTGAAGCCT CCTCCTCCTCCTCCTCAAAAGACTCAGACTTTATGCACCCACGCATCAAGTCGAAGCTGTTTCAATGGCG GTCCTGATTTCCCTTTCTTTCTCTGAGGGCAACTCCATTTTCCTGCAATCTCCTCTCCCCCAGAAAGCTG ATGATTCCACATTTCACCCAAAATTCTTCTCTTCTTCTTCTTCTTCTTTCTTTCTTCATCTTCTTCTGTG GCCATCTTCTTTAGCTTTTTACTTCTCGAGCACTCCCCCAGAACTCCTCTGATTGGTTTCTTCATGGAAC TTTGGTCTCTTGATTCTCTAAATCTTGCCTTCTTCATAGTTACAAATCCAGTTTCAGCGTCAACATTTTC CTTGTCATCTGATTCTTGGTTTACTGACTCCATATTTTCTTCTGGACGAGCCTTTTGAGCAGCTTTTCTT GGAGACATTTGCCTGTTGGAAATGGTTTCTTGGATATGTTTTGGTCTCAGCTCCTGTAATGATTGTGGTT TTGGGTTGTAGCCTTTGGGGATAAAGTTTGCTTCTTCTTTCGTTTCACTGAACAATGGTTCTTGCTTGAA GCTTGAATCTTTGTCCTCTTTTTTGGTTGAAGCATTGAACAATATAACCGTTGACTTCTTTTCCCTTTCT TGGTTTGAATATGCAGAGACCTCCTTGGCCTCCTAACATGTACAAAATTGAGAAAGTGTCAATGGATTTT CAAAGTGATCCCACACAAGTCTCTTTCTTTGAACTACAAGGTTCAAGAAGATAGCCTACCGTGCAGTCAT TTGATTTTAACCAGCCAGGAGCAATAATAGTCTCTTGCTTGCTCTTAGTTTTTCGGAAAATACCAGAACT ATTTTCTCCCTCAGTGTCACTCTCCTCAATGATTAGTTGATCATATTTCTCAGAAGAACAAACTTCAATT TCATGAGTGTCTGAAAGCTGAGGAGATTCATACACATAGCTTGAAAACCAGTTCCCAACATCAGGAGGCT CTGATAAAAGAAATAAGATTGCTAAGAAAACAGAAACAGTAATGACTTATGTACCAAATAAACTAGTTTT TTACCAACCTGAAAGAAGATGCTGAGACTGAGAGAAATCTGCAACCTAACTAGTAGCAAGAAGCATCAGA GAGCTAAGAGAGAAACATAGATTCATATAAGATAATCTAACACTAAGGCATAGGAAGTAGAAAATTATGT ACCTTTGCAGAAGAAGAGACAAGTTGTTGCTCAAACAAACTAGGACAAACATCATCTTTTCCTTCAATGT CTTTAGTCTCTTCTTCTGCTTGCGTCTCCTTTACACATTCACTATCTTCTCCACCAACCGAAAAGCAAAG AGCATCATTTGTATCCAGGACGGGCGGTGATTCATAAGCATAGCTAGAAAACCAATTGCCTATATCAGGA GGTTCTGAGAAGCACACACATAAAAAGTTACAAACATAACCCATCAAAAAAAAAAAAAAAGCTAGAGACT TTCCACGTTCATCCATAAGTTTAACAATCAAAAGGAGTATATACCAGAAAGGAGTGGTGACTCATAGAGA TTATTTGTCTCTTGAATCTGCCACAAAAGTTAAAAACAAAAAAAAAAATTGAATTTTAAAAACAAATCAA AGAAGAGTGAATCGATTGTAACCTGACTCACATTCTTGTTCATAGGTTTATGATCTTTGTCCGCACCAAG AATGTATTTATCTTCCTCTCTAACAGAAAACCCGTTCGGTTCTCTTTCACCGTCGTCCTTGCCTGAAGAA CTCAGTGCAAGAGATTCATAGACGTAACTTGAAAACCAATTCGTAATATCTGGCGGCTCTGTAAATTAAA AAAAAATAAAAAATAAAAAATGTCAACAACAAGACTTGAAAATTGCAATTAGAAGAATTCGCAGCATTCA ATTCAAATAACTCACGGGATATGGTAAATGGAGAATCGGAGTATCCAATAGGTTCCTGCCACACTCAAAC AAAGCTCGATTTCTCCGCTAATTCCCCAGAAATTCAGGAACAAAAATTAGAAAAAAATAAGGATAGAAAT GAATTTCTCACCGCCGCTGAGTGAACTTCTTCCATTAGATTACGACGTCTCTTGCTCTCTTTGCTTTTCT TCCTCACTCAGGATTCTGAGATGTTTATTTTACTTTTTTCCAATTTTTATGATTTCCCGCGCTTCTTTCC TGAGAAGCGGAAAACCAAAATTATGATACTGGGCCTTTTAATATCAATGGGCTCTTTGCTCGCAAACCAA AATTGATCAACACACCTTTCCCAATATCTATATTTGATTTTTTTTTGGTACACGATGAATATAAATTATC TGGAAGCACATAACAGCAGATGTGTTGGTGCTCCGATAAAACCGGTGTGAGCGTTCGAATACACATTTAA ACTAGATTAAACTTGCACGGGATAAATATTATATATTATTTTTATATTATATATTTATAGTATATTATGA AATAATAAATATATATTGAATAATTAAAAAGTCATTATCTACTACTTATATAATTAAATTCGTGCGAACA TATAAATAATTTTGATAAAATCGAGAAAATATTTTTTCTATTTGATATGATATATAATTAAATTTAAATG ATAGTAACATATAGAGAAAAAGACTAGGATAGCACTAAACCAACTTTTTGTTCCCAAAGTAGCACTCAAG GCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATATACACTTATACCCCTTGGGTTAATTAATC CAAACCTTATGGTTTAGAGTTAAGGGGTGGTGTTTTGGAATTAGGGTTTAAAATTTTATAAAAAATAAAT ATTAAAATAAAAAATAAAAATTTTAAAAACTGTTTTAAAAAGTATTTTTAAATTATAAAAAAAAAAATTG AAAAAAAAAATAAAAAAAAATTCGAAAAAATAAAATTTCGAATCTGAAAACATATAATCTGAAACTATAA AAAAATTCTTTTTTTAATTTTTTTAATTTTTTTTAATTTTTTTGTTTATTTATTTAATTTTAAATCAAGG GTATTAGGGATATTTTACCCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAG ACATAAACTTCAAAAGGTGCTATTATTGACAATTGCCCTAACATATATATGATATATTTTAATATTAATA TTTATTAGATGATTTTTTTGCTCATATTTTTTTTTTATCATTTGTATCTGTTATAGCAAAAAGTCTAAAT TAGTGATAACAAAATTTTCACGGTGGGATTAATTGTTTAAGAAATTTATAATATTTTAAAAAATTAAGTT GTCAATATTTGTTCAAATTTTTTATCAAAAAAATGTTCAAAGTAAATTTAAAATTAAGATATTTATGTAT TTTTATATGGCATATAGTTTAATTTAAAATGATACATATATTTAAATATCTTTTATTTTTGATACTTATT AAATGAGACATTCAACTTCTATTATTTTTAATTATTTGTATCATGTCATCACAAAAGTTTTAAATCATAG TTCACAAAATTTAAATGTGAAACTTTTAACACTTTTAGTAATTTATACTCGTTTTTAAAATTTCAAAATA TAATATATAAATAATTTTTTTTAATTTTTATTATATGGTTACTATGATGAGAAAAAGACTAGGATAGCAC CAAACCAAGTTTTTGTTCCCAAATTAGCACTCAAGGCTCAAAGTCACAAAAATAGGTTTCATTAAAGAGA TAAATATACACTTATACCCTTGGGTTAATTAATCTAAACCTTAGGGTTTAGAGTTAAGGGGTGAGGTTTT GGAATTAGGGTTTAAAATTTTATAAAAAATAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTC AAAAAGTATTTTTAAATTATAAAAAAAAAATATGAAAAAAAAAATTTGAAAAATAAATTTTAAAAAAAAA ATTTCAAAAAAACAATTATAAAAATTTTTAATCTGAAAACATATAATCTGAAACTAAGAAAAAATTTCTT TTTTTTATTTTTATTTTATTTATTTTTGTTTATTTATTTAATTTTAAACAAAGGGTATTAGAGATATTTT ACCTTTAATGAATGTCATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAATG TGCTATTATTGACAATTGCCCTACTATGATTGTTTAATTGATTTTAATAGCTTAAAATTAAAAAAAAAAT ATAATAATAATACGCTCATATTTTTATCAAATATTTATTCTTCAAAATCATTAATTGTCATATATACTTT AGCCACAATAGGTAATTCCGTAATCTTATTTAAAGAAATAATGAAGCACATTAATAATGTATTTATTATG GTTTAATAAAAAGCTTATTATATATTTAGATGAACTAACATATTTCTCTAAGGATTCTAAGAATCATTCT AGTGATGACACGTGACTACAAAAAAGTGTTGCAATGCTTCTCAAATAATATATAGGGGATATACATTCAC GTTCGGTTTGAGTATTTCAGATTTTCAGGTATTTTGTGTCGAGTTCGGTTCGGTTGGATTTAACTTTTTG TATTTTTAAAACAAATTTATGAATAAAAAAATATGAATCAAATAGTAAATATATGTTGTAAGATAGAACA ATAGATATTTAAGCAAACAATAATAAAATAGGTTGTTAACCAAAAAACGACATAGTATATATGACCGAAG CAAACTGACCCATCTAGGGTCCAACAAAAAAATCTGAATCCGAAAAAACCGAACCGATCCAAAAAAAATA ATACTGAATCTGAACATAAATATTTTGGATATCTGTATGTATCCAAAAAAGATTTATATACCTAGATGTA TTAATTATTTTTAGATTTTATAAATTAAAAAATCTAAAATTTGAAGGATATTTTGAAATTGTTAAAAATA CCTGAAAATATATACAAATATCCCCTATATATTAATAGAGAAACATTTAAAAATTTATAACTTGCAGTTT GTACTAATCAAAAAAGTATCATGCTGAGTTGTCAAGTAATTGTAATGCTAATTTTGCTTACGTGGCGGCT TGAGAATCAATTGAGAATTTTGTTAGTCCAAAATTAAATTGCTAGAGAATCTTATATTATATAGTATGTC AATTATGGACCATTCATTTATGAAATTGAAATTGTTATATTTTATTTCATTAACTAAAACCGACGGAATT ACCTAATGTGATTAAGATATATATGATAATTAATGATTTTAAATAATAAAGATTTGCTAAAAATCAGTAT ACTTTATATCATTTATGTTTAATTATTTATTATTAAAATAAATTACACTATTACATTAATCATATAATAA AAGTTAGATTTTTTTTTTCTATATGTTGTATTTTGAATTTTTCAAAACGAGTATACATTACTAAAACTGT TATAAGTCTCATATAAACTTTTGTGATCAAGGTTTAAATTTTTATTATATAATAACATACAATGATTATA AAATCATATGAATAACTAATTTTAATAATTTTATTTTAATAGGTAGTTTATGTTAATATATATATATATA TATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTCATATCGTTTA AGTTAAACTATACATCATATGAATATACATACTTATATTTTGATATGTGTTGAACATATATAAAAAGTTA ATATTTTAATTTTGACATCTTCATTGTTTCTTTTAAATGATTTTAAATTATTGAAACCACTAAACATTCC ACAGTAAAAAATCTCATTAGTGTATAATTTTGTTACAAAAATATGCAAATAATCATAAAATCATATGAGT AGAAACCTCATTTAATAAATATCCATATTAAAGTATATTATATCTATGTTAAAATATCATTTAAATTTAA TTATATATCATATACGATAGATATTGATTATTTTTATTTATTTACCTTAAAATGATTGCGAATAAACAAA AGCGGTCGTTTGATTTATATGTGCACGCCAATTTATTACATAATAGTAACTGATTTCTTAGTTATTTAAT ATAATTATTATTTTATTATTTCAAAATATGCAGAAAACCATAAAATAAGTAATAAATATTTATACTGCAC AAGGCGCGGATCTTGATCTAAGTATGTATCTCTTTAATAATTTTAAATCTTAAACATTTTCTAAATCTCA GGCCAAAACCAAAATAATTAAATGAGAATAAACTCAAAAATCAATATTTATATCGAGCAATAACCAAAAA AAAAAAAAAACGACACAAAATATGAAAAATATTGAAGATAGATAGGATTGTCACGTGAATGTAAACTTTT CATAACTATAATTAACTTTTAAGTTGCTAAATCATGATATAAAATCGAAATGACATAGTTTCATTGTAAA ATTTTTAGTCCCAAAAATCCGAATAGACCGGAACCGGCTACAGTTTGGTTTCCCGAACCAATTCAAATTT GAACAATATAATGGTCATTTAATATAAATAAAATAAAAAGAAACAATTAGTTATATCTCTTATTTATCTG GGAAAATCTCCCATATTTTAGTCTTAAATTATTACTGATAAAATTTAGCAGAATCTATTTTTTAACTGTA GTTTGCGATGAGCATGCTCAACTGGCAAAAAAAAAAAAAAATTACCTATCCGAATTATCATTCTTCCTAC TAAACTTAAATTTAATAGATTGGAGTCAGTTGATGACAAAAAAAAATGAAATCAGTTTGCAGACTAATAA AACAGATGAAGGTTGCAGCCGGGTTCTTTTAAGTCAGGAAAATCTTCCTATCACTTGGCTTTGCTGTTAT TGACATCGTCGTCAACATCCATGGCGTTACTGTTAATGTCGATGCCAACGTCCGCACTCATGTTCTTGTT CTTGTTGTCTGAGTTACTATCACAATTCTCGAGGATGATATTGCAGTTGTTGATGGTGGCCGAGTCTACA AGTCCAATGTTCCATAGTTTTATCATAAATAATCTCCAGCACCTGCTCATGTTTATGGTTTATCACACAA CCAAACACAAATGCTTGTTATTGTGTATAATTACGAGATGAATTTACCAGAAGAGTGGTGAGGAATGAAG CAACTCTTCCTTGTGAAACTTGGAAAAAGCTTCACATGCCCATGGTATATGACCATCCGCCACAACCCTG TAACCAAAAACTCATTAATTTTACAAAATGTTCCATCATTCAGACATGCTACTGGTGGATATTACCAGAT CAATTATTCTTATAGTTGGCATAAATGTCGCATTAAACTTGTAAGAAAAGTAGTTTACCTTTGTTTTCTT ACAAAAGAGTTCCAAAGATGCATGAATCTCTTTTCGTTCTTATTCACATCCACGAAATCATCAAGCATCT GCAGCTTTGTTTTAAGTATTTCATAATCCATTTACCACGTTACATCAATATACCATGTATTAATGAACGC AGAAAGAAATCATGGTAATACCTGGCGATCTTCCAGATCTGCAACGTCATCATCCACTTCATCTTCGCTA TCTCGATCAGACATTACTTGCTCAAGTGACATTGGCTTTATCACACAAACCCATGTAGTTTTTTTTGGTT AGTGACAGTAAAACCGTGACAACAACATGGAGATAGCATTATTAAGTCTGTTAAAGAGCTTATTGAATCA CCTGAACTCTGTGAGAATGATAGAACTGGCGTTTCTGAAGAAGTAGGTTGCTGGAAGAAAAAATTCTCGA GTCAATACGGAAGTAGAGTTCATAATAAGGAAGAACAATTTGGAACAAGATAACAAACCTTCTAGCCTCT GATCGCTCAGCAGATAACTTTCTTGACTTAGCAGCCGAGACCACAGCTTCGCTTGCTAACACAGCTTTGG CATTCGAGTCCAGCGAACATTGAGCTATGGCTGGTGAAGAATTGTTCATCCCAAATTGTGTTGCCACGGG ATATCCTAAACTATGGTTTCCTGTAGAATGCCATTCATTTATGTACATAAGTCATGGTAAATATTTTGAA AAGAATCAGAGGACAAGTACATTAACAGAATAATCAAGACACCCACATGAGAAGAAGAGAGTTTACCATT ACTCAGTAGGGAGGTTCCATTATCAGTGCCATTGGCTAAACTAGGTGAATCCATGGGTAAAAAGGTTACG TTTAGTCGCCTGGCGTTATTTTTACCACCTCTTTGTCTACGCTTACGAGGTTTCGAGCTGCAGAACATTA TTGGTTGGGGTTAGTTAATAGAGATGTTCTGACAAGGAGTTGCTGCTATTATTAATGTATATATATTTAA CTTATTAAGGTAGGCTTGTGAAAGTTACCAAAAAGAGATAAGCTCATATTTCTCTTGATGGTTGACTTCT TCCTGGTACAAAGAAGGAATGAATATCAACTACAATTTCTACCAGCTCCCAAGTTAACCAAGTTTAAAGT AACTGACCTCTGATTCGAATGCATCAAGTCTTACAGAGACATTAACTGTCTGGTAATCATCTTCTGAAAG CTACAATAGGAAAAGATGTTTGTTGTAACTAGAATTTCATAGCAAAACAAGAGAGTTGGAATAAAAAAAA ACAACATACCATGAACTCAAATTCAAACAAGTCATGGAACGAATTCAAATGAAGTTGCAGCCCCTGCGCA GACAAAATAACAATGGACTGTAAGCTCAATCAATCAGATAACCATTTATAGAGAGCGAGAAGATAAAGGA AACACATACCTTGAAGCTAACACATGTCATATAGCAAAATGGACAAGAACAATTCTCCGTCACTGCGTGA AAAAATTCAGGAAATAAAAACAAAAGTAGAGAGAAATAGACATGAGAGAACATAATAAAACACACACACA CACACACCTTCAGTTTTCTGCAATGTGTTATTACAATCCTTATAATTAAAAACTACAATCCCAGCAGATC CGGACCTAAAGAGAAGAAGCCATTCATGAGTTTCCATAATTAGACCCGAGAAAAGGAGGATTAAAGAATC ATTACTTTGTTTTGCCCTTTGCACGAATATTGTAACTCAAGCATCTAGGAAGAAACGATGGCTGCACAAA GAAAGAAACAAAAGTTAAAGAGGATCACAGTCAAGCCATGAAGCAGTATCATCAGCAGAGCTAAAAGAAA ATGATTTACGTTGAAAAGGGAGCGAATGCGAAGAATGTTGTAGAGACGAACAGGTTTACAGTAGATCAAG AGATTCTCATCAGGTGGTGAAACCACCTCCTCCTCTTGTGACGATTTCGCGCAACAATTATGCCTACACA TTCTCTCTCCTCTACTCAATTAGCTGCTAGATCTCTTAATCTTCTGCAATTAGGATTATTAATTGAAATC AAAATTAAACAGATCCGGAGTTGAACCTAAAAAGAAGAAAGTGAAATCAAGAGCTGAATTAGCTAACATG GGAAGCTCTGGAACCTGATCGGAGAGGCTCGATGTGCCGGAGAAGAAGGAGAGAGGATGAGGCGTAGATG CAAGCCACTGAGTCATCGCCACGCCATCTTCTCTTTCTCCTTTTCTACTTTCTTTTCCTTTTTTTATTTA TTTATTTTGCTAATTTTTGTTTCTTTTGTAAGCAATTATATAATTTACATTTAAAAAAAAAAACTGAAAT CTAACGCTTTACAATAATAAAAGTTGAAAACATGATAAACAACAACATTTGAAAGTTGAAATCCAAAGGG CAGTTTCGTTTTGAGAGGTGTTACATTATTAATTGATTGTTATTATTCACCAAAACAACTCCCAGTTCAC ATAAATATATGTTCACAACTAGCCTATTTCTCTGATAAACAACACTTTTAGACAATCATAAAAGATGTTC TTAAATTCTCGTACGTAATTAGTTAACTTTAAACTGAACATCAGAATAACAAATATCATAAATTATGGTA CATAATTAGTTAACTTAAATTGATTAATACTTTCAATTAGACAATCCATATAGAAGATATATATATATAT ATATATATATATACATATAGAAGATATATATATATATATAGAAAAATTAAATCTGAAATTTAAATGAGTG AATTCGAAACATACTGTATTAATAAGATGATAATAATGAAAGAGAAAAAGACTAAAATAGCACTAAACCA AGTTTATGTTCCCAAAGTAGCACTCAAAGCTTAAAGTCACAAAAATAGGTTTCATTAAAGAGGTAAATAT ACACTTATACCCCTTGGGTTAATTAATCCAAACATTAGGGTTTAGAGTTAAGTGATGGGTTTTTGGAATT AGGGTTTAAAATTTTATAAAAAAAAATACTAAAATAAAAAATAAAAATTTTAAAAACAGTTTCAAAAAGT ATTTTTAAATATAAAAAGAAAATTTGAAAAAAAAAATTAAAAAAAAAAAATTTTGAAAAAAAAAATTATA AAAATTTCGAATCTGAAAACATATAATCTGAAACTATAAAAAAAAATTCTTTTTTTCATTTTTTTATTTT TATTTTATTTATTTTTATTTATTTTTGTTTGTTTATTTAATTTTAAACCAAGGGTATTATGGATATTTTA CCCTTTAATGAATGTTATTTTTGTGACTTTCTCCTTCTAGTGCTATTTTTGAGACATAAACTTCAAAAGG TGCTATTATTGACAATTGCCCATATTGAAAACGATAAAACATTCAAAAGAATGTATATGAAGAAAAACTA AACTCTAATCTAAACCCTAAATTAGAATAAGGAAGTACAAACATATTTAAACGATAAACCAATAGCAAAA ATTTAGTGAATCCAAACTGATTAAAGTACAATAGGAGGGGTCCACAAAAATGATAGGACTAAATTAGCTA ACACTGAGAAGCTGTTGGGCTTTAATAAGATTTGCTGGGCTTTAGCTTTTTATCACCTGTAAATAAAAGA AAAGTTAGTAAAAGACTGAACTATCTCTGCTCAGCCGCCACTGCAAAAAAAAATGCCACCTATTATTATC TTCTCATTCATTACATTTCTCTCACCAACTTAAGTTCCTGTCCTAAATACCATTTGGTCTTTTTTTTCTT TTACTCCTCTAGATCTGTACTGTCCGTTGATTCATCATGGCTTCACATAATTACTAGTTCTGTTCTGTCT GTGTGATAATTTTGGTAAGGAAAGAAAAAACGAGGGCTGTAATCAATTCGATTGATTTGAAGATATGGCA ACTTTGAACCCTTTTGATCTGTTGGGTGACGACGCAGAGGATCCGAGCCAGATCGCCGTCTCCATCTCTG CTGATAAGCCCAAGAAACCTGCACCTGTTTCCGCTAAGTCATCTGCTCCGTCGAGGCAGCTTCCTCAACC TGGTGAGATTCGCTTCACACGATTAGCAAGTTATTAAACTTTCGTCTCTATTTGATTCCATCCGTGGTAT CTGATTGTTGTTTTTTAAATGATGTTGATTAGTGAGGGAGGCTAGGAGTGATGCTCCACGCGGCGGTGGA CGTGGTGGTGGTGGAGACCGAGGATCTAGCCGTGGTCGTGGTGGTTACAACCGTGATTTTAGAGGCGGTG ATGGTAACAGTGGAGGATACAATAAGCCCTCTGAGGAAGGAGGGGTTTCAAAGCCTTTCTTTGAGAAACG TAGTGTATATGGCGGTGCTCCTCGTGGTGGTGGTCGACGTGGTGAAGCTGGTGAAGGTGAACGTCCTCGA AGGACATTCGAGCGTCGTAGTGGAACTGGCCGAGGGTCTGTCCTAACCTCAGTCAGTTTTTGTTGTTGTT GTTGATACATTAGTCTCTTTTAAGGTTAAGCTTTATGTTTTTTGGTGAAGGGGTGACTTCAAAAGGGAAG GAGCTGGTCGTGGAAATTGGGGAACACCAGGAGAAGAAGTTCTTGTTGTGTAAGCATTTCTGATGTTTTA TTATGATAGTAGTGCTTGTGAATTTGGAATAAAAAAAAGAAGCTATTTGTCTCTTATAGGGAGACTGAAG AAGTTGCTGGTGCTGAGATTGAGAAGCCTGCTGGTGATGAGGTTGTTGCTGATGCTAAGAAGGAGAACGC TGCTGAAGTCGAGGAGCAGAAAGAGCCTGAAGATAAGGTAAGCAGAGGAATTAAGAGAGATGTTAAGTTG CTATAATAGGACATGGAACTGAACTTACACTTGTCGCTTTTTTTTTTTTTTTTTTTTTAAATTCTCATTA TTATGGCTTGTGCTTCTGTAGGAGATGACTCTGGATGAGTATGAGAAAATACTCGAGGAAAAGAAAAAGT CTCTTCAGTCTCAGACCACCTCTGAGAGGAAAGTTGATACTAAAGTGTTTGAATCAATGCAACAACTCTC AAACAAGAAGAAGTCTAACGATGAAATCTTCATCAAGCTGGTAAGACATATTACCTCCCTGTCTTGTCGA CTAGAAACACTCTGTACCGGTTCTGAGCCTTGCTTTTGATATATCTCCCAGGGTTCTGATAAGGACAAAC GCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGTTTACATCATTTGTGCCGGATCAAACCGTTTGTAGAA GCCTAATAAGTTTACCTATGGATGTGTTCTATGTTTTGCAGGCTGTGAGCATTAATGAGTTTCTGAAACC AGCTGAGGGTGAGAACTACTACCGAGGAGGAGGCCGTGGTGGTGGTCGTGGAAGGGGACGTGGTGGTCGT GACCGTGGAGTTGTTTCTGGTGGTGGATTTGATGGTTACCGTAGTGAAGCTGCGCCTGCCATCGGAGATA CTGCTCAGTTCCCATCTCTTGGGGGAAAGTAAGATCCAACCTTGGACACTCCTGCTGTCTCCTTCAGTTT TCCTCATCATGACTGAAGTGTTTCATGCTGAGTGTTTGCTGGTCTGTTGTTGTCAGGTGTAAATTGTTAG TTGTTGTCAGTTTTTAGAGTTTCTGAAAACTTATGCCTGACCGGTCTTTTTTTTTTAACGTTTGGAACAA TAATACCCTTTTCTATTTTGGTTTTACCACTTAGTCTTTATAGTTGTTTGTGAAAAGACAGACAGTTCTA ATGTTATATGCTTTGGGTCTTCTTTGGGTTCACTCTATTTGCTCTTACATATGTTACAAGATCTATAATA CTTTGATCTCTTGGAATGCCATGATCTCTGGTTACGGGAATTTGGAAATGGCATCAGGTTTCTTCCAAAC GGCTCTGGTTAGAGGCGTCCGTGGGTCGGTGATTATCACAAGGTACATGAAAGGAAATAAGGTTAAATTA GCTGAAGTCTTCAAAGACAAATCTGGTAACTTGGAATGCATCAGTTATGTCTGAAATTTTCTCGGCCAGA AGATGGACTGAAACTATACAGAGCAATGCTAGAGGAAGGCATTTGGTTCTTACTCCTCTGGACTGGGCAG TGTACTGCTCGGATGCTGCGAGTTATCAGCAGTACAGATAGTGCAAATCTACATCGTGTAACAATATAAA ACTTTGTCAGATCAGTATATACTGCAAGTGCAAATGTTGAGGAGAACTTGGTGACGCTTTCAAACACTTC AAGAAAATGAAAAAGAGAGATACTGAGAGTTGGCCTTGTGGTGACGGAAGTGCTAGTAGCCTTCCGCTGC TCGGGTTCTATCCGCGCTGGAAAGGACTATTTAACAAATGCAAAAGTTCCTGATAAAGAGTTGAAAACAC TTTTCTTTCTTTAAAAGAAAAAAAGAAGAAGAAGAAGATAGATAGTGTGGCCTATGATATGGATCTTTGT TACGGTTTTACTGGACTGTAACCATGCTGGACTAGTGTTCAAAAACCTGATAAATTAATCTAATAGTGAT TGCCATATAGTAATCAATTGTATCACGATCAGAGAAAGAGAGACGAGAGATCATAGTGAAAGACACCACA TGGTTTCACCATTTCATAGATGGGTGTTGCTCTTGTGTCGGTTACTTGTTATTATTAAAAAAAAAAAAGG AGAAGAGCGTTGACTCTCTACTGGACAAATCTGACGTGACGAGACGAGAGTATTTAAATGCGTTCATGTG CGTTAAAAAGTTTCGACACTTTTGACTTGACAAGTTGCGTTTAAGGAGAGGAAGATGCGTAGATCCGCGA GTGGCTCAAGAGTTTCAGATCAATTTTCCCAGGCGAAGCCGTCACACTCACGGTCTATGAGTCGATCTCA GAGTGTTAGACTTGTTGAAGATGCCGAGCTGCATTTGCCAAGGTACGACCCGAGCTCTCAATCGGGTAAG AGAGAGGAGAAGTCACGGTCGAGATCTGCTGAATACGTCGTCCATTTCATCCCTCTTCTTCTTCTCCTCT GTGTTATAATCCTCTGGCTCTTCTCTCGTTCAGGTAAACCATTCGTGCTTGGTTTAATTGGTTCGATGTG ATTGATTCTTTTCTGTCTAAACCAGTCATGTATCTCGGTTTTTGTCAGCGGCTGTCTTTTAAGGAGTCGA GGTTGAAGAAGCTAAAGGCTGTTACTTGTTTCCTTTGGGAAAGAACCAACTTTTTACTGCCAGGACTGGC GCCACGCAAATGTTTTTTTCCTTTCTTTTTTTGAATTTTGTTTTTTCTTTTCGACAAACCAGCCTTCATT TATATAACATTATTTTGTTATAAATGTGAAATTTCACTATGTAATACTATTTCTACGTCAATACTCAAAT ATTGTAAGACATACAAACTCATTTTCAGCGAATCACTAATCTAAAGTTTGTATGTCTTACAATTTTTTAT TAATTGAGCATTTCATAAAATTGTTATATGGATTCGTGTTTTAATTAAATTAAATTAAATCAAAGAGAAT AAAGTTTTTTATTATCTTATGATTCCCTATGCTATAAGACACACTTTCTGTAGAACACCTCCACTAAAAG GTTTTTAACCAAAGTATCTCAGAAAAATATCTATAGAAAAAATGACTGAGATACAGGTTCTGCATAAAGA ATTTCCAAAATCTTTTTAGAAACCCACAAAACAAATGTTACTTTCTTTTAAATACTTTAAATTTAACTAG TTAATAAAATAAAATTTAAAATAATAGTACTTTGTTATTTAGATACTCATATTGAGTATACTCAAATAAT AGTACTTTATTAGAGATGGGTAAACAAGCCGAACTTGAAAACCCGAACAGAATTCGATCCTATAAAAAAT GAATCCGAACTGATTCGAACCCGACATAAATATCAAATATATCTTGTTTTATGGTATTTCGGATTATGGG TGTTATCCAAACCGAACCCGAATACCCGATAAAACCCGAAACATTCAAAATCCCAAAAAAAAACTTGTAC CAAACATGATTTCAATTCATAATATGTATCTAAGTACACTCAAATATTATTGAACATCTAAAATAATTAT ATATTACATGAAAGTTGATGGCTGAAGGTGATGGTTAAAGTTTGAAGATTTTTTAGACTTTGTTTTTATC ATAACTTGGTTTTCGTTTTATGCTAACCCAACCCGAATCTGAACCGGTTCGAACCAAAATTTTGTATAAT CCGAATGAAACTAATTTTGATATATCCAAAAAATTGAGATTCTATTGGATAAAACCGAAATCTGATTGGG ACCCAGTTATAGGTTGTGCCATTGGGGTTGTTCTTTAATAAAGAAAAATATTATGATTTTTTTTTTGTCA ACCGAAAACTATTATGATTAATATAATACGTTTGGGGTAAAAGAAAAAAATAAATAAATAATATTTCAAT TTGGTGACCAAAAAGGAAATAAATTGGGATCTAAATCAAATCCAGCAAAGAGTTACTACTTACATATAAA GTGGTTAAACTTGAAATCTATCCTTCCAAGAAATCTTCCAGGTTTGTCTGGAATCTTAGATTAGATCGTA ATCAAGTCAACCGTATTGATAAACCTGTGATTTAATCTGACAAGAAAGCACCAATTCCTACTCATATTAG ATTTCAGAGTTCAAACAAATATCGACTCAGTTTTGAAGACAATCATGGCTGAAGTAAAGCGACCTGGTTT CTTCTTCTTCTCACACCAGGGCCTAAACCCATCTCTGAAGTCATCTTTTGCTTCAGTGAAGTCCTCGTGG ATGCGAGTAACATTAACTTCCATTGTTGTCTACGGTCTCCTCTTCCTCTACTCACCAGTTCCCATGTTTA TTTCTATCAGCTCTCTTCGGTTACACACCTACACTGCGTCACCTCATCAGAGTTCTCTGTCTCGGCATTG AGATCGTATACATAATGGCTATAACAGGGCTTGGCCTTGTCGTCTCTGTAGTAGAAGAAAGATACGGTTA AAGAAGGAGCGGCTCTGATGAAAGGGAGGAGGATAACAGGATTGGCTTGAGAGATGTCAATCAAAGTCCC ACATTGGATAATTAGACAAGGAGTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTT TGGGAAGGAAACCAAAAGTAAATCCATGCGGGCTAGCCTCCTAGGCCCAAAGTGGACAATATCGTACTAA TAAGATAAGATAGAGTTGGACACGGGATTTCGCAATCCCAACAATTGGTATCAGAGCGGTTGACGAGAAA TCTGCAAGAAGACCAAAATACCCTTCGAGTAGGAATGGGACCCTTCAAGGTGGAAAGGGAGGTTCGGCAG AAATTAGTCAGAAGATCCTGGAATTGTGGGAAGAACATTCTCAAAGCAACTCAAAGTAACCTTGCGACTA AGGGTGTCGAATGTCGAAGATGCGACAAGGCACCGAGATGATTCGCTAGAGGAAAAAGGGCACAAGGTGT GTGGTCCTTAGCTTGAGGGGGAGAATGAGAGATGTCAATCAAAGTCCCACATTGGATAATTAGACAAGGA GTGTCTAATATATAAAGAGATGTCCAACTCTAATAGTATGAGGCCTTTTGGGAAGGAAACCAAAAGTAAA TCCATGCGGGCCAGCCTCTAAGGCCCAAAGTGGACAATATCGTACTAATAAGATAAGATAGAGTTGGACA CGGGATTTCACAATCCCAACATGGCTTTGGCGGGTGTGTTGGTGTTTCTGTCGAGTTTCATTGGTCATGG GATGGAGAAGCTGGCGAAGGAGACTGGTTTGATAACAAGGAGAAAGTGGAAGGTTCAACGATGCTCCTTT GCCATGAAAGTTGCTAGAAGAAACTGATGACGACGGTATCTTCCTACTTCTAAAAGAACCCTGTGCAGAA GCTTCTCCCTCCCCTAATGAAAGATCCAGACCTGGAGCCGTCAATTATGCGTTTTCTTCTGTTCTTTGGC TACAGAGTAAGTGGGAAGATTCTTCAGATGTTCTTACTGTCATCTGCATTAAAAATGAAAAGATCGAAAA AGGAATAAAGGGGTAGCTTTGTAATTTACTGATCAGTTTAAACTTAAGCTTACCCGCATTCGCCTCTTGC TTCTCTCAGTCGCTTCATCACATCTCCATTGTTTTCACTTTCAGCTCCACCTGGTGATGGAGAGAGATTC AAGACTCTTACACCACATCCTTTTATCCTCTCCAGAGACAAGGGACAAGTTTGCGTGTACCGTTCAAGCC AGGCCCAAATCTCACGCAAGAACAGGCATAGTTATGGAGGAAAAACTCAAACTCCACATGGTTGTAGCCT AGTTTAGATGGAGGACTATAGACTTCTCCTAGCGGGAACCCGAAGTGGAACATAACCAGATGATCCATCT TACATGAGTCCACGTCAAGGTAGAAATAATGCACGCCGCTTTTGCCTCCGACGTACCAGCGCACCCCGAT GTTTACAGAACGATCCTTGGGGTCAGTTGGGGGTTCAAGAATGATGCAAGCCTTGAATCCCCAAATCTTT TGAGAAAGAGAGCTCTGAGGTAAAGAGATAACTAGGTTACTTCCACCAGCTCGATGCATGAAATATGTTG GCACTTCTCTACCGGGTGAGATGGCATAGTCGAAATCTGATTGCAGAATGAGTTCCCGCGCATTTTCATC CATATTGAAGCAGTTATAGAATTCAAGACGACTCATTGGATTGACGAAGGGGTGAGATAAAACCCGGAGA GATTCACAATTCTTTGCACAAGCTTACTACCTGGGATTATGAGTTCAACGAGATATTCTGCGCAGAAATC AGAAGGCATATATCTCATAGGACAGTCACTCCAAACAAGTTCAGTGAGCCTAGAAATAATGCCAATGAAG AAACAGTCTTCGTCTTCTACTATGGAAGTTCCACCTAGTAAGAGCCTTGAAATGTTACTTGAAATCCGAG GGAAACTTCTCAACCTTGCGCATCCAGTGAGATTAAGATAGTGGAGAGATGCCAAGTTGACATCTGACGG AAGAAACTCGAGTCTTATACATCCACTCATGCGCAACACCTTGATTTCATTTAGATTACGAATTCATGAG GATGGAAGAAAAACCAAGCTTTTGCAATCGTTGAGTTCCAATCTCTGGAGTTTGGTGGCCTCTGAAAGAT CTGGAATTTCTTTCAGGTTTTCGCATCCTGACAAATCCATATACACTAGATCTTTAAGCAGCTGGAAACA GAAATGAAAGATGCATTAGTTGATGTTGAATGTGAAGAAAAAAAGGGAAATATATGAATGAAGTAGTTTT AGTAATCTCAACCCAAGCCAATCCTAGGTAGAGTCTTTCGTAAATCTTCCCATTTATATTCGCTTAGCCT AAGCCTAACCACCCCATCAAACTTTATTGGGAATTTGTGACACTAGCCAATCAGGAGATGCAATAGCAAC ATGAAAAAAGACCAATAGTTCCTCCTCCTATGCACAAAAACATTAGTAATGAAGATTAAGAGACCGTTAC CTGTTTGCTCAAAAACAAAAACAAAAACAAAAACAAAAAAGAGACCGTTACCTGAATTCCTTCCCACAAC ACCTTTGCCAATTTCGTCGGTCCCATCGTAATCTCTCGCTTCTCTCCCCTTGTAACCTAAGATATTTTAA AAATCTATCAAATAAGAAAAGTTTAGGTTAATGTAACTAATAAAAAGCCATATTTCATATTATCTTCTTC ACTGCAAGTAAATTCAGGAATCAGACAAATGCTAATCAACTCATTCTCAAGCAGAACATACTTAAAACTT CACTTCGATTGATTAAATATTCACTCTTCATATCAAGGGACCAAAAAAGCTAACGCAAAAGCAGGTATAA GACTAACCTAGACTCAAATCACCGATCTCATCAAGTGTTATTTAAATTATTTTGTTATTTAAATTAATTT TGTCATATGAGAAAATTGCTTGATATAAAAATAGATTTATTAATTTAAAATTTATATTATTGTATTTAAG ATAATTATTAATCAGCATTCTATGAACTTTCCCTTTTTTATAAATCATATTATGTATAATGTATAATTTG TTTTTAAATTTAATAATTGTTTCCTATAATAAATGTTTATATATATGTTATTTGAAAAGAATATAAAGAA ATAAGGTTTAATAATGACGATTAGATATAATATTTTGAAGTAATTGTGAGTACCATTATAATTAACCGTC ATAAAAATTAAAATGATATGGAGAAGTACGAAAAACCAGAAAATAAATTAATCCATAATTGAAAAACCGT ATGCCCAAACCTAGATATTCTGATTAGTGATTACAATAAGATATCAAACTTAATTCAAGTGTTGTCCTAT CCTTACTTCACCTAATTTTATAGACTTATAATGAGTTAGGATTTAAGAGAATACATTTGATCAAGCATTC AAGTGTAATAACGGTCGCAATTCATGAATCGACTAAATGTACAAGCTTCGTCGATTAAAATTCAAATCAC TTTTATGCAAATATGAGATGATCGAGAGTATATATGGAACATGTGCGTTGTTGTGATGGTCTAATGTAAG AAGATGGTTAAATAGTAAATGAGGGCCACAGAGTACTGGTGTGAGACAAAGAAAATAGTATGGGGACAAC CATAAATGGCGGTTTGTGAGTGCGAACATAATATTTGGCCGTGGAGTTTATTAAGATGCGTTACCTAATA CAACACGTATGGTCCCTTTTTGTTGTTTGTTTTGTAACCTAGCATTATGGTATTTTATCCTTTTCTACTA GATTTTTGTAATGGCCAGATCCAGATGGCTGATTCATTAATTTTGGAAGACTCAAATGACTTGTGTTTTT TTTTTTTTAACTCAAATGACTCGTTTAGTGACTTTCTAATTAGTTAGTGCTGTTCTTGTGTTTTTCTTTC ATTCGTATGCGGTATGACGTTAAATATTATTTCTGATATATCATTCACCCTTAAATTATACTAAATCAAA CATATTTCACTTTAGAAATTTTTTAACTGATTAAAACGATAAATGCATTTTAATGATATTATATATAGAC AAATCGTTTTGTAAAGCTCTCTACATGCTCCACTCCACCATTTTCGTATTATGATATTATAGGATATATA TATATATAATTATATATATATTGACTTGACTTGGTTATAATATAGTCTAACCCAAAATATATATATATGA ACATCGTTCTACTATATTAATGGCTAACAAACATCATTAATGTCCTTGCTAATAATTTTGATGGTCCCTT AAAACCAACCCGTGAATCGGATTGAATCAAAAATATAAAGAATCAAAATAAAAGACACCATAACAATAAT AACCCCGTTTCCATGTCTATTGATTATTCTACCTGTACTTACAAAGAGATATGTGGAGGAAAATAAATCA GCATCTCATGCCTATCCATCGACTGATACGTTTCACACTATATATCCAACGGTCAAAATTTTTAAAACAA ATAAACTCTAATATATATATATATATATATCCCCAATAGCACAAAGAACCTTCACTTTTCTCTCCCATTC TTTTACAACTCACATTGCACATCCTTTTTCTCTATATATTACTTAACATAAACCACTATTCACAACACAA ATACACACATAACCATGGCCTCTTCACAAGCTTTCCTTTTGCTCACATTGTCTATGGTTTTAGTTCATTT CTCTTTAGCTCAATCTCCCATGATGGCTCCTTCTGGCTCCATGTCCATGCCGCCAATGCCTAGCGGCGGC TCTCCAATGCCAATGATGACTCCACCACCTATGCCAATGATGACTCCACCACCTATGCCAATGATGGCTC CACCACCTATGGCTATGGCTCCACCACCTATGCCTATGACTCCACCACCAATGCCCATGGCTCCGATGCC AATGGCTCCATCTTCAAGTCCAATGAGCCCACCAACTACTATGGCCCCAAGTCCAGAAACAGTCCCTGAT ATGGCTTCGCCACCGATGATGCCGGGAATGGATTCTTCTCCTTCTCCGGGACCCATGCCACCGGCAATGG CCTCTCCAGATTCCGGAGCATTCAATGTAAGAAACGACGTCGTAGCAATTTCGTTCCTTGTTGCAGCTCA TTTGCTCCTAGTTTGAGATTATTATTAAATTGGCCAGCGTCGTGTTTGTGTAATTTACTTTCATTTTTTC TCGAGCCATTAGTTTTCATGTTTTATCATATATTTGGGTTTGTGTTTGATATGGTACGATTCAGACATTT GTTTGCTTAATAAGTTTATCGTTGACTCTATTTGATGCATGTGATGTAAATTCATTTTTATCCAAATTTT CACAGACGAACTATCAATAACCAGTATTATCAATATATATCTCGTTGTTAGTTGGATGATATCAAATTAT CAATGCATATGGTGGTTCACAAGAAAAGGAAAAAAAAGAGATAAATGTGTATATATTTAACAAGCTTGAG GTAACTATTTGTAGCAAATAAAATAAAATACGTTAGTGAGAAATGTTATCTTTCTAGAACGAATACGAAT AAAGCAAAAAGCTAAAATTGCAAGCTGTGTGTCATAAGAATCGCATATGTAAAGAAAAAGAGGTCGCCAT CTTGGATTTTTCTATAGAATAAATTATTTTTAATTCTGTGTAGGTTACATTTATTTTAAAAAATAAAAAA TAAAAAAAACATTTATTTTTTTTATTTTTTTGAGCAAGGTTACATTTATTTTATTTCATGGAATAATACA TGTACAAGATTTGAATTTGTAAGAAAATTAAGAAAATTCAAAAAAAGAATGGGAAGAATATGAAAGAGGT AGTGAATAACAATTGTAGGGAATAGGGATAAAGCAGGACTCGAGAGGACAGCTAAAAAGAAAGAGACGTT CACATGACTGTCTTTTTCATTTGCCCCCACCATTTTCCAATGTGTATTATTAGAAATCATAACGCAGTTT AATTGTCTTTAAGTCATGTTAGTTATTTATCTAAAGCCATGTGGTGCATAGGTGCTATGTTTAAATCATT TTTTGAATGAATGTTAACTTTATTCATCAAAAAGCCATGTGGTACATAGGTGCTATGGTTTTTACTGTTA TAAGCTATACAAAAGGATACCGTCTGCTACCAAACCAACATAAAAGAATGTTTCCAAATCTATTATTATC GGATTGCGTCAATAATCTGAGATGATTTCAAACATTCTTGTCAATCATTTTTGCCAAGGTTTGATGAGGC GTAGGCGTAGGACCACAAGCCTCAGATTTTTTGGGTTAGTAAAAATATAAATGTAGATACATCATCAACC TACGGCGTGTTGTTTGTTAGCTATGGACTGTCAAATGTGTACAACATATTTGTAGGATTTGAGATTGGTG TTGTTTACAAGCCCTGCAAGTGAGAACACGGATGTGGCTGGGATGTTCTTGGGGAAGTCCAGCCATGAAG AAGAGATGCATACCGTGGTTTGCAAGCAAATAGCTTGTACATTCTATCAGCTACATTATGTTGCAGTACA TGTTCTCTTTGTCGATGAAGTTTCTGTGATGGTAACACACATCAGTACATGTTTTTTCCAGCCCCAAATT CTCTCTCAACTCATTAATACTACTAACAATAATTGACCAGTCTGTAAAAATTAGCAAGTGTTTTTATACA ACAGTAAAAACAAACAAACTCGCTTCTGTTACTTCTCAAAGATCAACCCAAATTACAAGACACTCTCGTG TGAGAACTAAACCGGAGACTTATAGACATGTGATGCCATTCTATTTGTACAACAACAGCTCTTAGGTACA TGAATGCAATGGAAGTTTGGTCCCTTTGGGACAGTTAAAGGTCTTTTCTCCCCTGAAGCAGCAGCACAAA CAGAAGGTTTTTTGACGACGACTGCAGCTTCCTTAGATTCTCCATTGATCATCGAGGTTACAACTCTTTT GATCCCACTTGCTTCTTTGTACCTGAGGCAACCCTGAGGAAATGCATAAAATTATCAGATCACATGCTGA TATTAAGGTAACAGTTGTTTATATGTGGAAAACAAGCGTGGTTCTCTCAAGTGAGACACTGCAACTACTT TGTTTTCTGATTAAAAAAAAAAACAGTTTTCTACCTCTTGCAGTTCACCATATCTTCAGAGGCATCGTGT CTAACAAGTGTTTTTGTGGATGTTCCTCTTAAATATTTTGACCTGGAAGTTGTGTTCTTCTCAAGCTGCA GTTGAAATTAGTATGTCACATAAAGAAAGAAAAAAGCCCCACGATGACCATACATGGATATGAGAGAACT TACTGGAGCTGGCTCTTGTTTTGGACCCAAGATTTCACCATGGAAGCCAAGAATGTTGGTAGTTTCTTCT TCTTTCCTTAAAAAACATGAAATTATTCTTCCCTCAGAAGAAAAGAACAAACAAGAGTTGCATACTACTA GTGCACATCATACATCAGTTCTTAGTCTGAAAGGGCTTTGGATTCGTGAGCTTAGGCTTAGTATACTTGA CGCGGGAAGTAGCCGAAACTGTCTTGCCATTAAAACAATTATCCGTATTGTCATTGCCTGGTTTAGTAAC AAGTACATGAGCAACACATGATAGATAGATACATAGGAGAAACACAAAGTATACACAAAGAAACTGAGAT ACCCTTTGAGTGGTTTTGCAAGTTTCTTTATTGCCAAAGACATTGTTCTTCAACAGGGGGTAGGTTGCTG CTTGGTCGACATTCCTGTGAAATTCAGACAAAACAAAGTATATCTGGTGAGGTGGTAGGAAAAAAAAAGA ATAACTGAAGCAAATAAACAATATTTTCCACACCTGTTATTCTTAAAGGCTGAAGAATTTTCTTTGTCAT TGCTTCCTTCGTCTGCTTTGATGTATCCTTTATTACAGCAGGATCTTCTCCGGCCTGGAGTTGATCGTCT ATATTTCTCTTCAGTTTAACCAGCTTCTTTGGGGAATGAAACACCAAAAGCCTTTGCAACAACTCCTAAA CCCTGCTGGACTCTTCTTATGCCTCAGTTAATTCCTTGTGATGACTTTGGAGTTGCATTCTTGTTTGTGG GAACTGCTTTCACTTCTCTTGGCCTCAACTTACCACCATAAGCTTTGTGAGGAAGTGATGAGATCATAGC CAATCTAGAAACTCGTGATCTTGAAGGTTACCGTGTTGGGGAATTTGGGAGGATCCTCACTGTAATAACA AAAGCATGTAGAACATGTAACGTTAAACACACACTACAGTGACAAAAAGATAAAACACAAGTCTCATAGT TTGACTTTCATGTAACCTCAAGTCCTTTCTGTAAAAAGCTTTACGAAGAAGACGAACACTAGGACTCCTA GCTGCCATGACCTAGGTAATGTTCATCAAACTCAAAAGTCTTAATCTTGAGAGATGACCCGAAGACCGAA TCACTGTGCTTCTGATCACATCCTAATTACACATTATCACCAGTCGGGATTAAATCAAGGGAGATTAATC CATATGCCCTCTACCCTCCAAAAAAATCCCCATTTATCCCTTTATTATAATATAATTTCTTTTTCATTTT TTTTTAAATAGAAAACGTGGCTAAAGACAGATTGCCCTAAACTAATTTAGTTATTTACAAGATCCAACCA GAAAGATCCGACCCATACAATACAAACCCTAAAACCCGACCCATCTAAACCAAAACGATGTCGTTTTGTA TCACTCAACATTCTCTTCTCCAAAATTTTCAATCATCGGGTCTGTCTCTCCTCATGCGACACTCTCTATT GCAAAATCGGAGATTGAAACCCTAGAGTATCTATTTTCGTTCTTCCTTGTTTGTTTTCTATCTAAATCGA AAATCCATCTTCCTTCTTCCTTGTTGGTTCGTGTCTCAACTATCTCTTTGTCTCTCTTGTCTGAAACCCT AAAGTCGAGACCGCTTCGTTTCTTCATCCTCCTTTGTCGAAATCGAGGCTCCATCTTTGTTCCTTGTGGT AAGTGATTAGTTTCCCTTTATTTGGTTGTTATTTGGTCGAATTTGTATGTAGATTTGAAAACAAATTTGG GGAAAACTTTGAATGTGTCTTATGTTTAGATATTGGTTTTGAAATTGGATAAGAACTTGGTAAATCTATT GTTTAGGTATATATTACATAGAATCTATTGTTTCCGATTTGAGTTATAAATTGTATTTAACTTTTGTTAA TAAAATTGTATTGGGGAAACTTAGTTGATGTTGTGTTGTTGTTTTGCGGTTTGAATTTAGAGTGATTGAG TGTTGTAATGTCTTGTACAGGAAAATTATGAAGAAAAATCAAAAGGTAGTCCCCAATGAAAGTCGTCGTC AGTCTCTTAGAGTCAGGAAACCGGACTCGGCTGCAAAAAAACCAGAACCGAGAGTTCAGAAGAGCAAGAA AAGCAGTAAGAAGAGTAAGAAGAGTAGGCCAGTGAGAGAGCCAGCGAGAGCACCGAGTGTAGAATCGCTC TCAGTCTCAGATGAGTCCGAAAGAGAGGGGTCCGATAGTGAGGGGTCTGAAAGAGAGGTATATATTTTGT ATTCATTGTTATTGTTTGTGAGAAATGCTGAGTAGTAATTAGCAGTAATACAAGTACTTTTTGTATTACT AGCATTACTAACATGTATAAATTTATTTTGATTGCAGGAAATGCAACCGAATCAACCCCTTGAGTTCTAC TTCAAAAGCAGCGAGTTCCCCCATAGTTCGAAGATACAAACTAAGTGCTTCGTGACCAGGACAGTAAAGC TCATCAGGGATAAGCCTGAGGCTGCGTGGTTCACAAGCCATCCTCAGTTTCGACATTTCTTCCACATGCC AGACGAAGATAACCTGAAGCTTCAGGGGATGTGGATGTTACTACTGCGCACCATTTGTACTCCAGAAGAT GATGTTGCATGGTTTGCGGTTAATGGTGTACCCATCCGCTATTCTATGAGGGAGCATGCCCTCATCTCTG GGTTAGACTGCGGTGATTATCCACCAAACTATGAGAAGTTGGGAGGTTATAAGTTTGTGGATTATTACTT CCATGACAGAAAGAAGATCACCATCACTGATGTGAAGCAGAAGATGTTGTCTATGCCGCCGTGTCCAGAT AGATTGAAGATGACAGTCTTGTTTTTTCTTGGTCGGGTTATCAGAGGAAAGCCGAAGGATGCTGGAAATT TAGACGACTTCATATTAAGGATGATGGACGATTTAGATGCTTGCAGATCATTTCCCTGGGGTCGTCTAAC GTTTGAGGATGCAATAAAGGAGATTAAGCACGTGATGAACCATCTGAAGGGTGAAGTGAAAGAGGCATGC GCCTTTCCTGGTTTCATCATCCCTTTAGAGGTAAAGCATATAGTTTAGAAAAATTTTAATTGTTTTATAA TTCAAATTTGACACTGTGACAATGGATTTTCTAGGTTCTGGCTTTTGAGTGTATTCCGGATCTGGGGAAG ACGTTTAGAATCTATTCAGAGGACGCCAGTGAAGAATGTCCAAGGATGTGTAAGAGCCGGTTTACAAAGT CCAGTCTTAGGGGTTATCCTTTGGAAGACATATATGCTGCTGTTGGAGAAACAAAGGTACATGTATAAAT GTATAGTAGAAGCTAGTAGAACAAAAAACTCATTTGAGCTAACATTTGTTTTATTTTCAGGTTATCAACA GTGTCTTAGTTCCAACTATTGGTGAGCAAATTATGCTGGCTCGTATCATTGATGAGGAGCGAGAGTATGA CCGTCAGGGCAGCCCAAGTGATACTTGGAACTACTGGTTAAATGTGAAGCAGAAGAATATTTGGTGGGAA GAGCTATATGAGTTGGATCAAGCTGCACGAGGAGTGTTGCCAAAAAAGAAAGACAAAGAGAAGGTGACGT TTGCAGAAGGATCATCCTCTAATTCTGGATTAGATTCGAGGTTGCAAGGTCTGGAAGAGAGGATTTTGGA GTTCATGGGAGAAAGATTTGCTGGACTTCACGTCACGGTGGAGACAATGTTAGAGGCTCAAAGCTCAAGG ATGAGTGTTCTTGAAAAGAACCAGCGGCTTTTGAGAAGAAGGGCTAAGAAAATAGAAGACAGGCTAACTT CTATTGAGAGTAAAGTGGAGCCGAGTCATGGTGAAGACATGGATTTTCGACAGTGGGACAATGATACATA TGAAGAGAAGGACAAAGCTTGTTCTGAGAAGGAGAAAGCTAATGCTGAGCACGAGGCTGGAAAAGAAAAG GATAACATCGAGAATACTGAGGAAGAGGGTGAGAAAGAGGCTGATGACAATGCTCAGCAAGAGGGTGAGA AAGAGAAGGAAAATAGTGAGGCTGATGAGGAAGAAGACAGTGAGAGTGAAAGTGAAGAGTTGAAGCAAAT GAAGGAGAGAAGTAGAAGACAAGCTGCTAAATTGTGGAAGGAAATTGCGAATGAGGAAAAGATTGGAGGG AAACATGATGAAGAAGAAAGTGAAGAGAAAGAAGCTGAAACCAGTGAGGAAAAGGATGAGAACAATGATG AGAAAGATGAAGAAAAAGTGGTGGAATCTGAGGCTGAAGGAGAAGATGATCAAGTAGAGGTTGGAGGGAA AGAGGATCAAGAAGAAGAAGTTGAAGGAAAGGAGTCTGAAACCAGGGAGAAAGAAAAGGAGAAAAATGAG ACTGAGGAGGTGGAATCTGAAGCACGGGAGACAGAGATAGAAAAAGGAACTCCGACACCACCACGTGGGA ATCAGACAGAGAGAACTCCCAAAGATGATGACAATGAGCCTCGGGTTGAGCCTCGGGTTGAGACGAACAG AACCGGTGAAACTCCAACACCACCACATGGGAGTCAGTCAGAGGGAACTCCCAAAGTTGATGACACTGAG CCTCGGGTTGAGACAAACAGAACCGGCATATCTATCAGTTTCATCATCCTCTTCTGAAAGTTGCACTTCT TCATTGATGAACTCCACATGTAGAACACTTCTACACTTCTCATGATTTACTTGCAGTAGATAACCAAAAA CGTCTTCATCATTCCAGATGTATGATGGCTTGTACGAATACAATACCATTGGAAAGTAACTAATCTTCAC TTGCACCTTAGATTCATCTACCCTTATCTTTCTGCAAATACGCTCAACCAAAGCATAGTAAGTGATATCT TCCATTGATTTCCTCAACACAATCGTGTGGATTTCATCTTCTCCTTCACCACCTCCTGAGATCCATTTTA TTTCAGCCCCATCTTTCATATAATATCCCCCATAATCAAAACAAATGATTGTGCAATTCGGATTTTGCAT TTTCCTGAAATAAAATAGAATATCATTAGAATTCTCATTATTAAGATGTTTAGAATTAATTATCACACCG TACAATCTTCTCTTACTAATACTAATTTAATTCAGTACTATACATAGTAATACTAGAAATTACAGTAAGA AATATCAATATAGTAATCCTAGTATTTCCAGTAAACCTTTTTTCTTTAGTAAAACTAGTTATACCAGTAA TACCCAGAACTTATCCTTGAACTAACTAATTCGCTTTTAGGACCCTATTGTTAGTATTTTACATCAACCA TGATGTATAATTCATCTTAAATGAAATTACACACAGAAAATCATCGAAACACACATAAAAATACCCAAAA TCTATAAACACAGTTTTCAAAATCTTTTTAAATCTCTCATAATTTTCACTGGATCTTCTTTTTTTTTACA CTAGCCGAGATATACACTTTTTTTAATAACATTTCAGCAAAAAAATTCATCCAAAACGGACGTTAAAAAT ACCCGATAGCCCTAAACACAGTTTTTGAAATCGTTTTTAATCTCTCAAATTTTCATCAAATCTTACTTTT TTAACGTTACCTATCATATACACGATTTTTAAATGTAATATCACAAAAAAAAATCATCGAAAACGAACCT GAATTGCCTATTTTTTGAGCTTCAAAAAACGCTAATGGAGGATGAGAGGAAGAAGCTTGTACGATGAAGA AGGAGACATGTGGGTCAGGAGAAATCTGATTGGTTAAGGTTGTTTTGTGGGCCATATAGGTTGTTGAATT ATGGTTGGTTTATTTAATTGGAGAATAAATGAAAGGCTAGTTTGGGGAGTGCAAGGATAAAAGGGTAGGA AGAATAGAGAAGGGGCAGTAAGAATTCATTTAAGGGGGTATGGGGCATATGGAGTTAATCTCCTAAATGA AGAAAACTGTTCACTCAAAAACCCTAATTTAAACACATAAAGTAATGAATTAAGTCATATTTGTCTACTA GGTATATACCTATGCTTTGAGTTTGGAAATTATAAAATGAATTAATGGGCTTTATTGGGTCTAAAGGGGC TTTACATTTTTAACAGGAGGAGGAGGGAGGACCGTCCGATTGAAAATACTTAAGAGGACGAAGACAAATC GTGACCGTCCGATTGAACATATATCCGTTACGGTTTAAAGATCCAACAATACACATACCAAAGGGATTTT TAAGGTTTTCTCCCCAAATGTCTTGGACGACGACGACTCATACAACAGTGAGTATTCTTTTTGCCGATCG TTAATTTGTTTATTTTCCGTTCTTAATCATGAAATTGACGCAATCGATTGAGTTTTCTTCCTCTTATTTG CGATTTTATTCAAAGGTTTCTCTAATCCTCGTCACATCTCTAGATCCTAAATTCGTTTTTTTTTTTGTGA TGCGATGGATTAAGTTTCCTCGTCTTCTTTGTGATTCGAAAATCCTTGTCTCAATCTCTCTCTAGATCAT GTATCTGTGTTTAATTTTGTTTTTAGGGTTTCTTTCCCGACTCCACATGAAACCAACCACCGTCGTCGAG GCACGTCTTTGTCTACAACAAATCTTTGCGGGCTACTTGATGTAAAGCGAACAAAGTAGATCAACAATGG TATATATATACTCGAATCTACTTTGTTTTTATTTTTGAGTTAGCTATTTTCAACTTTTTAAAGTAATAAA GTCTCTTGCTTTCCTCTTTTTCTTGACAGGGTTCCATTACATCCACAACTCCGAACAGAGTCACTGAAGC TCTACTATCGCCTGATATTAGGTAGAGACGACTCTTGTGCTCTACCGATTCTTACATTTGGTTTTAGTTT AATCCCCAAAAAGATCATATAGGCTGACACTAATCTAATAGTGTTGTGCTAGATTCTTATTTGGGGACAT TGTCCCGTCGGTTGGTAGTGCATGCGATGTTTGGGGATGAAACTTTAAGTACCCACGGCTTATTAAGAAA ATGACCAGCGGCTTAAAAAAAATAAGGCAAAGACTCTTGTGACCAAGTCTTTAAGCAAAAGGTTACAGAT ATGTTCATGTTGGATGGATAAAACGAACAACAATGAACAACAACATGTCTTTAGACAAAAGGCCATGAGA TTGTTGGAATGGAAAAAAGCGATAAAAAAAGGGCTTAAAAAGAGGTCTTTGATGAGACAATGATTGTGAT ACCCACGGCTTAGAAAAATTCATAAGACAATGTCTGAATTGGTCTTATTTGTCCCGTCGGTTGGTAGTGC ATGCGTTTGGGGATGGATAGTACCCACGGCTTATTACGAAAGCGACCAACAACTTGAAAATAAAGACTGT AAATTTGTTGGATGGACTAAACGACCAACGGTTTACAATAAAGTCTCTGTAAACAAAGATTATGACTGTG TTGGATGGATAGTACGATCAACAATAGCCGTGTTCGTTTGTTAACCGCAAGACGCTCCCGCTGCGGCAAG AAAAAGCACGGTGATGATGATCAAAATAATAGAAACTTAAGTTAAAGTAACCGCCAACTATTTTCGGAGA CACAAAAAACGAGACGCCGGTGCCGCTAAAATTTTCAGCGTCCCTTCTACTGCTCCTGCGTCATCGGTGT TGCGTGTTGTTAATCGCCGCTGCGGTCATGGGTGTTGTGTGTTGACGTGATTCCCGTTTAATTTTTGGTT GCTGCCGCTGCGTCTTGCGGCTAAGAAACGAACACGGCTAATGAACAAAAATGTCTTTAGACAAAGGTTA CAGATATATGTTGGATGGATAAAACGATCAACAATAAACAAAATGTCTTTAGACAAGAAGAAAAAAGTGG TCTTTGAGGCAATGATTGTGTGATACCCACGGCTTAGATAAATTCATGTGAACCTGTTGAATGGCTAAAG CGATCAACAGTTTACAAAACGTCTTCAGACAAAGACTGAAATACCCACACCTTATGAAGAGTTCTTGGAC AATATTGCTACCCACGGCTTAATAAAAGTTGCGTGTTGGAAGGGAACAAACTACCCACGGCTTTGAAAGG TCTTAGACAAAGATTTTGTAGTTTGGTTTTCTGAGTTTTTCTGCTGTAAAGACAACCAGCGGTTAAACAA GTCTTTAGACATCAGAGCCAGAGACTACTTATTTACATTACCACAAGGCTTGAAAATCGTTACAAGGAAA AGACCAACGAGTGGAAAGAGTTTAAGACAAAGACTATCAAAACATGCTCCTTACTTCACAACAAGCCTTG GCAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTTAGACAAGTC TTTAAGACAACGACTATGAACCAAGTCGATTAAGACAAAGACTATCAAAATATGCTCCTTACTTCACAAC AAGCCTTGGCAAAAGAATTTAGACAAAGACTACGCCTGGCTTGTTGGACAAGGAAAACGATCAACGGTTT AGACAAGTCTTTTAGACTATGAACCAAGTCGATTCTTGGTTTTTGTTGGATGGTAAAAACGACCAACAAT ACCAAGTTTTGAGGATAGGCACTTTGAACCAAACACTGAGCTTGTTGGATGGTAAAAACGAACAATGGCA AACCCATTCTTAGACATAAACTACGAAACAAAAAATTGATGATAAAAACGACCAACAAGCCAGGTTTAAG TCAGAGACTGGGCCGATAATTGATTCTTCACTGCACTACTAACGTGTTAGAAAATTCGTTTTCAAAGTTG CTGTGAGAAGCGGCTTGAAAAAGTCCTTACTATGGGATACAAAAAGACGATCAATCTCATAAAGAAAGTT ATGAAAAAGACTCTGAACATTAACATATTCCTTACTTTACCACTTACAACGTTAAAAACTCACAAGGTGA GTATGAATCATTTTGCGTGAAGTAAAGACTAATTAATTGTGATTTCCTCAGGTTTTGTATATATGTGCTT CAGTAGGATCGGAGCAAATTTCAAGTGTAGCAGATTCTTTGACAGGTATGTGCTCTTCAAACTTGTTTGT TATTTAGTTAATACGATTATGAAAATCACAAGATTGTGACATAAACATGAAGTAAAGCTATATTTTCGTT TATGTGGGTATGTGCTTCACAAACTGTTCATATCCTCCTCACTAATTCCAAGGATTTTCAGGTAGAGTCT TTTCCTTACTTTCTTTATTTATTTAGTTTTCCTTACTTTCTTTCTTATTCATTAGTATTATTACATTATT ATAATCTACAACCTAAGTTAAGTGATATGTAAAGGTAATGAAGATCTTAGCTCCGTTTTTAACTAAAAAC GTTTTATTAAGCTGTCTTGACAACATTTCTCTCATTGATCTAGCATCCTTGAGGTTCTAGAAACTTATTG CTAACATTTCCATTGATGAACAAGTAGATTCTTTTTACTATTAGAACAGTATATTGTGCGTTTACAGTGT TTTACTGTTTTGTAATCTCTATTTTGCTTGAATGTATTATAAGGTTTTTTTTAGTTTTTGAAATGGATGT ATCTTGGAGTTTCTTGTATATCAATGTAGGTGTTAGACTCCTGCAGATTGTGGTGGTACTTTCAATGTTT CTGTTTTGTGTCATGCTCCCAAACCTCCTTGCTCATTATTAACAGTGTTAGAATCTCTGTAGTTTGGTGC TTGTATGTATTATAAAGTCTCTTATTTTGTGAAAATCAGTTTGTCTTGGAGTCTCTGATAGATCAACGTA GGCGAGAGACTCTAGCATGTTGTTGTAGTAGTTTTTCTTAAGAAAATTTATGAATGTTTCTGTTTTGTGT CATGCTCTTAATCTTAAACGGTGTTATTTGGTGCTAGCGTGTATTATAAGGTCTCTCGTTTATGAAATGG AAATATTTTAGAGTATTGTTGATCAACATAGGTGAGACTCGTGAAAGTTGTGATAGTAGTTTCCTTGAAT GTTTATGCTTTCTGCTCATCCTAACCTTCAGTGTTCACTGTTAGTAGTATTTATGTTGCTTAGAAAAATA TTTATTAATTTTAGTTAGATCGGTGCTTGTGTGTCTATTATAATGTCTCTTAGTTTTTCTTAAAAAAAAT GTCTCTTATTTTTCATGAAATAGATGTATATTGGAGTCTCTTGCAATTGTAAACCAACGTTGGTGAGAGA CTCTTCAAAATTGTGGTCGTAGTTTCCTTGAATCTCTAGTGTGTTATGTTTTGTGCTATGCTCATAATCG ACTCTACTACTGATCTTAGATCTTCGCGAGTCCTTAAACACACAAAACCCTAAGATTTATAATCGGCTTT GTTTTCTTTGGACATAAGAAACCGAGAAAGTTGATCTTTTTCCAAAATCTCAAAATGAAAAGAATCGTTG TGTTTAGATTACATGCGGCTAGAGAAATGGTAAACCTGGCCGGTGTTGGAGAAGACGATAAGAGCGAGCA GAGAATCGAAAGATCGTTAGCCTTCTTCATCAACACTTTACGTCTGTTGGTGAAACTGACTTGAAGTCTG TTCACATTCTCGATCTTCTTTAACTCAATCCTTCCTCTCCCCATCTTCTTCTTCTCTTAACACAAGCAAT CAATCTGGGTTGATCTGTAAAATCGAAACAGGAGAAACAGAGAGCTAGATGGAAGTAGTAAGCCTTTGTA TCATAGGTATGTATTTCAAATTTGTTTGTTATTGAGTTATACATTTATGGAATTACAAAAAAGAGATAAA GACATAAAAGTAACAAATAGTTTCATTGGTTAAAAGCATATACCTGATACTATTGTTGGCCGAGGAATTG TTCAGGTATATCCTTTCTTGACTTTTTTTTCTTTGATAAATCGATACTATTACAAAAGAAAATTGACAAA CTAAGTTACACGTAAAAGTAAATAAATTGGAAACGAAGATCTCAGCTCCATTTATAGTTGAAAATGTTCT ATTAAGGTGTATGGACTCTCAGTGTTTTAGCATCTTTGTGAGATTCTTGAAACTGATTGCTAAAATATTC ATTGATGAACAGGTGGATACTTTTTTAAAAAAATATTGGAACATTACATTTGTGTTTACAGTGTTTGTCA TCTCTATTTTCTTCATTTTGGTTATTGTATGTATTATAAGATCTCTTATTTTATGAAATTGGTGTATCAT GAAGTCTCTTGTAGATCAACGTAGGTGATAGTCTCCTGCAGATAGTGACAGTAGTTTCTTTGAATCTTGA ATGTTCTGTTTTGTGTCATGCTCTTAACCCTCAGTGATAATTATAAACGGTGTTAGTTATTTCTTTAGTT TGGTGCTTGTGTGTATTATAAGGTCTTTATTTTTTGAAATGGATATATTTTTGAGTCTATGCTCAAGATA GGTGAGACCCTTTTGCTCAAAAAAAAAGGGTGAGACCCTTGAAAATTATGGTAGTAGTTTCCTTGAATCT TGAATGTAATTGTAACAATGACCAGGAGTAGAATATGCCAAATTAATTAAACCCTATGAGCTCGTAAATG ACCAAACTGAGTTTTGGATAAAGTTAGATACTCGAGATATATGGACTGCAGAGCTGTGCCTCAATGTAAA AATTTGAAGCATTGGCTTAGGGCATCCAATTTTCTCAAAACAATAAGGGAATTTTTTAGTGTTATCAATT CAATTAAAAAGAATACAAATGAAATGAAATGCTTACAGAAATTTTTCTGATAGTTAGAATAAAGAAAACA AGAGTATATTATAAAATTATAATTTTCATATTTACGAAATTAAAATTGTATATAATTATTTTAAATGTAA TACAATAAATAAAAGTTGGTCATATCATATAAAAGATTGTATGATTTGACTATTTTATACTTGTTTAAGA ACATCATATAAAATATTAGTCATATTATTTATTTTAACAGAATTGGTTAAATGATTTAAATTTTAAGTTT ACTTAATATTTTGCTTTGTAAATATAAATACTAATATTTTTGTATAGTTGATTAGTTTTATTTATTTCTA TTATATGTACAAACTACGGTAACATTTTGTAAATAAATGTAGGCATTTTATTTATAATCGCTTAGGGCAG TTTTAAAGGATGGACTGCTTATGGATGGTGAAAAACTATGGTAAAACCAGTACTAAGGAACTACATCAGA ATGGATTCATGTCTTACTATATATTGTTCAATGATACGATACCTCGGTGAATGTGCCCAGCTATTTAGCC AAAAGATCATTGTATTTTATTTGAAGTTCAGACTTCTCAGCGTGAAACTTCTCGTAGTCAGAGACTGAAG GACCTCCTCCTAGTTTTTGCTAAAATCAACCATGTTCCCATCGTAACTATTCCTAAAATCCTCTCTAAAT AAAGGGAAAAAAATGAGAAGTAACAGAGGAAGGTTTTGGTTACCGTACAAGAAGAAGACAAATGGTGATC TAGGTTCATCTTTAAAGCTTGGTTTCGAGATATCATCATCGATCTTGTCACTCGAAACACACTTAAATCT TTTCACTTCACTTCGTTTCTCTCCGCACTCGTGCATATCAAATAGAGCAATCGCGATCATAACTCCATAT TCCTCACTAGAATCAAATCCCAAAACAGAGTATCACAAATCTAGATTGAATCATAAGAAAACTCAAATCG ACAAATCAAAAAAAAAATTAAGACTTTAGAGATGTGAGAGCAGTATCATTTCTCAAAAGTGCTTCCATCA GCCGCACGACGAACAGCTTCAAAAGAGAAAGAAGAAGATAGAAAGAAGAACCCCTTTAATGCTTTTTTAA TTTTTTTTTTGTATTTTTCTTAAGAACCCCTTTATTGGAGGTGGTCACTTGAAGAGAACACTTGGTCCTA CTGTACTACACTCAAGCTTTTTTTTTGTCATCTGTTGATTAACATTAAGGAAACCGAAGGTTCAAGAATT ACAAACTTCGGACACAAGCCATAACAGCACTACACAAAATGAATTAGCCTAAAGGGACTGGACCACCTGC ATCCAGAACCCACGACAACTAATACTAGCCAAAAACAGAGCACTACACACTATCAGTACTCAACATCTCG TAAAAGTTCTTATAGTAACCCTTTGTAGAGGGAGGGATTATCTCACTGTCGAAGATGTGCTTGAGCCACA CTGGACACTCAAAAGCTATTTGATCCCCCATTAATTATACCATCCTTATTTGGTACGTTCCCGTTAATAA GAAACTAAACTCGCCCGAAGAAAGCTTCCCATGAGAACCCCTAAGCCTAGTTGCCTTGGGGGCTAACAAA ATCTCATCATCAGAATCAGCATTGAACTTTGGATGTCCATTGTATCTCCTTTTCGATCCAAACCCACCTC CTGAATCGTGATCTGAATCAAACTCGGGCTTAAAACCACCGTACATTCTCATCTGACTCTTAACCCCAAA CCCGTCACGAGGCGTACTCACCAAGGATCTCTTCGATCTAACCCTAAATCCATCCACACCGTTACTCTCG TTCTCACGATCCACATCCTGATCGTTCGGTTCAACGGCCGTGGAAGTCACCGACGCTAACTCCATAGCAT CCAAAACAGGGAACAGATCCCCCGAGGAAGAGAACTTGCCTGGTTTGGTGAGACACCGCTGCTTCTCGCC GCGGTAACGTTTCCGGAGCTTCTCGATCTTGTGCCGGCATTGGATGGCTGTTTTCGCCGGACCTCCAAAG GTAGGCAACGACGCGGCCACGTCGTCCCAGTCAGCCGCACGGAGGTTCCCACGGCGGAGGGCGAACGAAC CACTTGTCTTTGTAGGCATTGACGAGCGCGGCGGTCTCCTCGTCGGTCCAGCACGGAGGCGGGACTCTCC TGGTAGTGGTGGTCGAGACGGTGACGGCGGTGGAAGGATCGATGGCGGTGGCGACGGGGGATTCATTATC GGGGGTTGACATGCCGGTGGCAAAGAAGAAATTAGGGTTAGGAGAAAGAGCGGTGGGTTAAGGATGATAA GAGAGGCGGAAGAGATGCGTAGGTTAGAAAACTTGGGGGAGGAGGTGGCCGGTTTGAGATTGTGCTAAAT TGCACCGCGTAGTGATGACGTGTGCGCAAGTATGAACAAGTTTAAACCGGAAAATGAACCAAATAGATGA CATCACAACACAAGAATCAGTATTCGTAGTATGAGAACAGATCCTAGCTGCTATGATTACTGATATTTAG CAGGCCAATTTGTGAAAGGTATCTTACGTTGTTTATATGATTGCCTTGTGAGTCCCAATATGATCCTCGA TTCTCAGCCCGATGAAACTGGCAGCCTGCGCAGTGGCGCATAGTTAACAAACTAAGAATGTATTATACTG AGTGAGGAGCGCACTCAGGGTGAAGCTGCAACAAAAATTAAGCATCAGCGTCAAGTCCGGAACATTCCCT AGAAGTAAAAACAACATTAAAACTAAGATACTTACTTTGACATGAAGTACACCGTGTTCTGTCTCAAAAC CAACAATGCCCTAACAGAAGCAAAGTAGCTAATCAGTAAATCCGAGAACATTTGTTTTCATGGAAATCAT CACCCGACACATTAATTTCACAGATTAGAAGGAAACTGAGAACACAGTAAGAATATATCTTATGAAATCG GATGAGGAGAGCAGTTATGAACATCCCAATCAGGTAGACAGATCAATACAAAAAAAAAAAAAAGGCAAGA GTAACTTCGTGGAGTAGTAAACTATGGCAATCAACCGAGGTAAATTTTTTTAAGACATGACAGATAGACT ACCTGGCCTTGTCCGAAGATCAGCCCAGATGTCCACATAACTTTCTGCCCACCACCTTCCTGTCGAGCAG GCACCAATACATCTTTTTGCTTCTTCAACCAACACTGCGCAGAGAAGAAACAGAACCCATAAACTTATTA AGTCAATCTCTGTAACTTGAACCTATGTCAAGTGTCTTTTGTCCAACACTTAGGCGGCATGATCCAAGGA CAGTACAACTTAAAACAAGGCGATTCTCGCAGACTCACCTCTCCGAACTTGGACCCGCAAGCCTCTTTGT CCCCGCAGAAGACCCATGAATCGCACAAGCAAGGTCCGTCGTCGCCACTGCACATAACTTTACACGCCTT GCAACATTCATCCGACGAATTAAACTTGAAATCCGTCCCCCACTTCACCGCCGAACCCCACAGCTCCAGA TTATCTACTCCACGGCAACACCCTCCGCCGCCATCTACACGGGAGTGATCTCGCGAGTCAGTGAACCGGA CGGCGGAATCGAGTTTGTGACCTTGGGGACGGAGAAGAGCAGTGAAGACAGCGTAGACGACAAGACACGA TATCAGACCGATGAAAAGGAGCGCGGCGGCGGTAAAACGGCCAGGATCTCCGTCGTTTAATCGACGGGGC ATGGCCGGAGTAGTCTCCGAGGGTTGGTTGACTTTTGTGAGGAAGATGCGAAAGCGAAGAGGATAGAGAA GTGAGGTTTCATGAGATATTGAAAATACGAGAATCAATAATGATGAAGAGATGGTTGGTGAGTCAACTCG TGCGGCTGCCTCTCTGTAACCTTTGAACTATCATGGAAGATTGTGATCTCATTATTTTGTTTTCCTGTCT TCCTTTCGGAAGTTTCCTCTACGCTTACGTCAGTTTGAAGTAATCAAAACACTGTCGTTTTAGAATTCCT TTTTGGGTTGAAAAATCCACTGATATATACGTACCATTTGGTTTGACCAAAGAAAATATGTACCATCATC ATTGGTTGTATTAGGGATACTAGATTTTAACCCGCGCTTTCAAAGCGCGAGATCGTTTCTTTTTAAAATT TCATTTAAATTAATAAACATTTGTCGAATCTATATTTTAATAGATTTTTTTATTTGTTTATAGTCAATTT TTATAATATTGTCTTCTTTATTTTTTTTTATTATTATTAAAATAAAAATGTTTGTCCTATATTATCCTAC GTAGATCCTGTTGGTTTGTTCGAATGTGTGGGTTTGAATAGGAAATCGGTGTTGCCTATTTATAATATTG ATCGGATTCAAAGCGAGGTGTTAGATTTTAGGAGAAACTTGGAGAGGAAGTTGGGAGATCTTCTCTTTAA AATCGAATCTCTCTATATTTTAAGATTAGTTTTTGAAAAATTTAGTTACTATGTCAAATAGTTAAAATAT TTTTCTGCGTGTTCCTAAAATTAGGGCATCTTCTTTTTATTTGATTTGATTCCGTAAATCTTTGAGTACA AAATGGGATTTAAAACGATTTAATCAGCTTAAAAACAAAAATGTAAGTAGCAAATTGGTTGGGCTTTTCA TTTTCGAAAAACATTTAAAACAATTTAAAAAACAATTAAAAAAGGAATGAAATGTTTTGTAATTAATAGG AAAATTCAGGGGCAGATTCATAAGAAGTATTCTGCTTTAATAGTATAGATATATCCCATATCGGGAATTC TAAGGGATATTAAATAATATATAAAGGGTTATGATCAATTCATTAATTACTAATTGGTTTTAAGTTGAAA GCTCATAATAAAGAGAAAAAGACCAAAATAGCACTAAATCAAGTTTTTATTCCCAAACTAGCACTCAAAG CCAAAAGTCACAAAAATAACACTCAAGGGGTGGGGTTTAGGGTTTAGAATTTAGGGTTTAGGTTTTAGAG TTTAGGTTTTAGGGTTTAGAGTTGAGAAATGAGGTTTTGAGGATAAGATTTCAAATTTTGAAAAATAAAA AAATTTAAATTTTTCAAAAGATAAAATGCTATTTTGGCCATTTTAATTTTTGAGTGCTATTTTTGTGATA TAAACTTAGAAATGTGCTATTTTAGAGATTTGCCCCATAATAAACCCGAATCTAACATGGTATCAGAGCC CATATCCTAAATATCCTAAAACTCTTAATTAAAAATTAAAATTAAAAATTAACCCTTCCGACGGGGTATA AAGGTCGTGATTAACCCTTCCAACCGGGTATAAAGGTTGTGTTAAACTCGCTCGACTGAGTATAAATGTC TTAAAATTCTGAGATTTCTGGCCGATAACAGCCATCATCTCGAGGAGGGGTATTAGGGATATATATCCAC ATCGAAAATTTTAAGGGACACTAAATAATATATAAAGGATTAGGGTCAATTCATTAATTACCAATTAGTT TTAAGTTGGAAGCCCGTAATAAACCTGAATCTAACAGGTTGGTAGTTTGAATTAGTGCAAGAAGCAGCCG GTTCCAAACTAGTGTAAGAGTTACCATAAACATAAGATAGTTTTGCTTCAATTTGTTATTTATAATAGAT GAATGCTATATTTGTGGAAATTCTCTTAATTGAGTGGTTTAATTTGAGGGTTCGTCAATGTTTATATATT AGTTTCGAGTACAAGAGAAAGAAATTTATGAATATTAATGAAGACAAAATGTACAAATATCTTCAGCATC GTGTAAGTATAACCGTCAAATCGTATATTTTCAGAACATGTATAAAACAGTATAGTTAAATGTAAATTAT CATAAAACATGTTATATAATATTTATAACTAGGGTCGGCCCGGGCTACGCCCGGGTTTTTTGTTTAAATT TTAATTTTGATTATATATTTTGTATATTTATTTAATATATATATAGTATAACCTATTATAAAAATATAAG CTATTAAATTATTTATAACTATGCATTTTTTTGTCTTATGAATTGAAAAATTTTAAATCCAAATTTTAAT ATCCAATTTTTTATATTTTGTAATTGGAAACTTTATATAAGGTGAAGAGAAAAATTAACAAAAATTAATT AAATTTTAGTTATAGTGTTTGATTGGTTGGACTATAGATATGTTTCATTTCACTTACACCTTTTTATATC TTTTGTTTCCAATTAGTTCTAAGCAATTTAATTGACCATCCCCCTTGAAATCTACAATCTTACTTAATGT TTTTTTTTCAAAAATCAGCGGTTAAAATGTTATAATATTTTCTACATCAAAAATTTACAATTACATCAGT AAAAATTACATACTAAATTATTTAAACAAATTTTCTGCATTTATAACTAACTAATCGGACCTATAATCTG AATATTTTTTTATCTCACTTATATAAGTTTTTCGATTACATATTGTTAAATGGACAACCCGATAAAATTT TATTTAAGTTTTAGAACCATTGAATTCATAACTTTAATAGGTGTTTGAAAATTTGTCTTTCCAATTTTGT ATGTTCCGCTTCATCATGCAATATATTTTGATGTAATTGCACCATCTATGTTTATATATACATTGTTTCA AAAAAAAATCTTCTATATATATATATATATAAAGTGGATATATATAATCAATTTTGAACAATGACCATAA TCGTATAACAAATTGTCGTTACCAAAGTATAACAAATTTTGTGTTGTTGTTTTATTTATATTATAGCAGT GATGTCACATGATAATGCACAAATATGTGGAACTCACGTTTCTCCTCTTTAAACAAAAAATATAGACTGC CAAGCTAAGCTATTAAAGTATGTATTGACCTGTGAAACTCAGGTTTTTTTCGTTTTTGGGGTTTTTGCTT GTTCCAAGCAGCAGTAAAGTAATTCACAGTTAACAAAAAAAACAGATGATACATGATAGAGCACCTCCAA CAATCTTGGAGGTTTATGCTTGTAGCAACAACTATTAGATCAACACAGAAGCCTTCCAGGTGGTTGTGAA ACGATACAGCTTGAGAGTTGTGAGTGGAACAAACTCAAAGTCAGAGAAACATCACTAACAATGGAAAATC AGAGAAATATCTGTTCAGACGTTTTGTTTCTTTTCTTTAAAACGTATGAAAGTGATAAGGACCACAATAT GAATCAAATACCTGTCGATTTTAATTGTTGCCATAACATGACTGAGCACCTCGAACAATCTTGAGGTTTA TGCTTGTTGCAACATCATCATAACTGGGAGCAGCTGGAGCCTCCGGTCATGACACGATGTTTTCCTTGTG TAGGGTCACTCACAATACTCTTCACAGCTGTGAGCTCACAGATAAGGTCTACAAAGAAATCAAGATGTCA ATATCTAATCACTTTCCAATGTTGATCCTGGGCTAAAGAGATATGAAGACGATTACCGGGAAGGTGTGTG TTCCTGTTGGCCAGCCAAAGTACCTCACTGTGATTATGGAACTTGAAGCGTTCTTTAGGAATTGGTAGAA CCGTATCTCTTCAAATTCAGTTGAAACACTGAACCGTAAAAGTAGAGGTGAGTCAGAGAGCCTGTAATTC TGATTGCAGCGAGTTATATCAAATCAGTCAAAGGAGTACATCAAACCTGCCTTAAAATGATGCCGGTAAG CCGTGAGACGGTGGCGGTATGAGGGTTGCTTGAAACATTAAAAAAATGAAAAAAATAATCAATAAGGGGA TTCAACACCATCAATCAGAAAGGATTAATATATTGTTGAAAACATAAGCTTGATAAGATTATAAATGCTG TCCAAAACCGAGGATGATAATAAGGTTAGAAATCAGACCTTAGAGTCGAGGAGAAGCTTGTCCACGCCCA TCAGCTCGTCACCTCCTTTCACGTTTCTCGAGAAGTAACACCACCACAGTGGAAAAACACTGACGGCCTC CAAATCAGCGAGCATGAAAGTTTAAGCGATGAAATCGAAGAAGATGAGGTTTTGCTGATATTAGGAGCCG GGAGGATGATTTTCGTAAGGTGAAGTCTCCCCTTTTTATAAGTGAAGATCACTGCCTGCAAGGAAGATAA GAAGCATTCAATGAATCAGTCGTGGTTGGCATGGGTCCAAAGGTTAAAGAACATGTTAGGGTGATCAATC ACTTAACTGCGTAACAGATCAGAGGAGGTCGAAATCAAGCGTAACGACGGGAACTATGAACGACACAAAA GTTTATGAAGATCTGACTTGAGGTTCCTTCCAGAACATCCATGCTTGTTTGACATGGTCGGATCTAGGGG AGATGACGAACCCCTAGCTTCTTCTGTCGACATTCTCGATGAAGGTGCAAGAGGAGAGACGAACTCAATT TTTGCGTAATCAAACTTAGGGTTTTCGATTACAGGCTGCCGGGCCGCAGAAGAAAATATCAGCCCAATCA CGTTTCACAGTCAAAGCCCATCGGATTAAATGAAGTGATGCGTTTTGCTTGTCTGGAACACGTGTCATGC TGAGGTGGCATCACCAGGAGAGAGCAAACCATACTTTATATATAAAGATAATTTGCAGTATCGTAATAAA CTAGTGAGTTTGTTAGAAAACGAAAACAAAGTGTGAAATTAGGAAAATATCCAATACAGTGAAACTAGTA CACGCACATATACATGTCATAATACAAATTATCTTTGTCGAACTGTGAATAATAGTGTCTTTAGGTATAT AATTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTGCATTTTGATCGTATAGATTAGGA TTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGGTATTGGAGTACCACATAGAGTTC TTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAGTGGTCATTGGGCGAGCAAGGCAT GGAGCGACCAGTCCGGAGCGACACCACCAAGTCGCTCTGACCTCCCTATTGGAGCGACCTTACCAGAGCG ACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACGAGCCCGGAGCGACACCACGAAGT CGCTCGCATCTCACACCCCTCTCGGAGCGACCTCCCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATG GCGAGACGACACGAAGCGAAGCCTGGAGCGACCTCTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCG GAGCGACTTGTCGGAGCGACATGCCGAGGTCGCTCCGCGCCTATTATCTGCTCGATTTCTATTTTACTTA AGGGCCTTTTGGTCATTTCATTATGCACGTTTTACATTTCTAAAACCTATGTTTTAAACATCTTTTGTAG CCACCAGAGGCAGATTATCTTTTATCTTTTGATCTATTGAGAAATACACAAGAACTCTCTTGAGAAGTTC ATCTCTTGGATTTTGATTTGTTATGTTCTTGTGTTCTTGTTGATTTCTTATCTATTTCTCTACATGATTA ATCTGAAATCCAATATGGGTTTAAGAGGAATCATGGAGATTAGTGAGTAATCACCTTTGGAATTCATGGG TTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAGGATGTTTTAGTGTAGATCATTCATATTTCCTTGCTA GTAGAGTAATCATAATGCATCTTCTGAGTTGGCCACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAA AGGTGTTCGATGAAATGCCCGAGACAACTCTCCTAGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGT TAAAGATGCTAAGATAGCTAATAGACTTGTTAGTAATGATTGCTTTCATATTATTCAACCAAAGACATTT GATGTTTGAGATATGTTAGCAAATGAGCATTCATCTAGACATAGAGCTTGCTTAGAATTGTGTCTAAGCT TAAGGTTGATAGTTTGATTGATCATTTGCCATCCTTAGTTCGATACTTGATCACCCAAGGTCTAATCCCT ATGCCCATGAGTTCTCTTTTCCTTTAGTCAAAAAAGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCAT AGTTTAAAACCCATCTAAATCATTGGTTGCACTTAGATTAAGTGAGTACTTGCATTCTCAGTGCTTTGAT ATCCCTCAGAACTGGTTCGACAATCTTCTATACTACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAAC ATCAAATTGGCGCCGTTGCCAAATTCTGAGTAGATTTGAACATTGAGATTTAGTCACTTGCTTGAGACTA AGTCATTTTTATTTTCTTTTGTTACTGATTCTCTTTCTTCACCTCCCTTTAATCTACAGGTGTATGAACT TGAGGAGCAGGGGTCCATCAAACCTAGTTCCAATAGCTGCAGACATCAGAGCTTTAGAGAGAGAGTGTGC TAGAAATAGAAGAGAAGAAGAGCAACAGGCTCACTTGCAGAGATTGAGTACTGATATGGGAGACATACCT CAAAACCAACAGCGAGCAGCTCGATCCATTGGCACTTACGACCGCCCCAACATTCATGGTCATAGATTGG GAATCCGAGCACCCGCTGTGGCAGCCAACAACTTTGAGATCAAATCAGGACTCCTCAACGTGATCGAGAA CAACAAGTATCATGGCTTGGCTCTAGAGGATCCATTTGATCACTTGGACAGGTTCGACAGCTACTGTGGG TTGTCAAAAACCAATGGTGTGTCCGAAGATGCCTTAAAGCTCAAGCTATTCCCTTTCTCTTTGGGGGATA AGGCACGTCAGTGGGAGAAGTCTCTACCCAGTGACTCCATCACTACTTGGGATGACTGCAAGAAAGCATT CTTGGAGAAGTTCTTCTCTACTTCAAGAACTGCTAAGCTGAGAAACGAGATTTCCAGCTTTCAACAGAAG AACTTGGAAGGCTTCAGTGAAGCCTGGGAGAGATTCAAGGGCTACCAAGCTCAATGCCCACCCCATGGCT TTTCTAAGGAGAGCTTACTGAGCACATTCTACCGTGGTGCTCTTCCTAAGTACAGAGCCAGACTGGATAC AGCTAGCAATGGGTTCTTCTTGGGGAGAACTGAGGAGGATGCAGAAGAGCTGGTTGACAACATGGTAAAG AGTGATGCAGTCTACAGTGGAGACCACGACAGAGGCAGTAGAACAGATGATAAGCAGACGAGGAAAGAGA TCAAAGCTTTGGAAGACAAGATCGACCTACTCATTGCTGAAAAAGCAACCCAAGAGCAGCTGAAGTTTGT TGGTAACTCCAAGCAGGAAGATCCACTTGCTGTCAATGAGGTTGAGGGTTTGGAAGGTCAAGAGGAGTTG TGTTTCATCAACAACAATGGTAGCTGGTACAAAAAGGAGCCCAACTTTCAGTACAACAACTACCAACAGA AATCCTATCCAAACAACCAACAGAGTGGCTATCCGCCAAGAAACAACCAGCAAGGCAGCTATCAGCCTCA GCAAAACCCCTCGTCTGGTTCCTCTGCTCCTCAAGAGAGCAGCACTGATACCTTACTGAAACAAATCTTG GAATCTCAGACCAGAAGTGAGAAGCACGTTGGTTATGAGTTGAAGAACCTTCATTCCAAGATTGATGGGA GCTACAATGAGCTCAACAACAAATTCTCACACCTTGCTTCTACAGTCAAGAATTTGGAGAATCAGTTTGC TTCCATGAACACTCACCAGAATCGCCAGCAAGGATCTCTACCTGGAAAATCTGACCCAAATCCTAAGGAA GCCAAAGCTATCACCCTTCGGAGTGGTAAGCAGTTACCTCCTAGAACCCTCACCAAGGATGCTGAGAAAC TAGGTGAAGGGGTTGCCATCAACATAGATGATGAAGTGGTGATTGTTGATGAGAAGATCAATGACGAGAT CTTGGAGAAGATAGTGGAAGCCAAAGGTAAAGGAAAGGTTGGGGAAGAGAAGAAGACAGTAAAGGATGGT GAGGTTGTTACTCCAGCAAGTGAAAGTTCTTTTGTTCCTCTTCCTTATGAACCCAAACTTCCATTCCCTG GTAGATTCAAGAAGCAGCTGCTAGAGAAGTACAAGGCTCTGTTTGAGAAGCAAATGAGTGAAGCTCAGGT TGCAATGCCCATCATCGATGCTTTCATGTTGATTCCTCAATACAACAATTTCCTGAAAGATGTTGTAGCT GCAAAGAAGAAGGAGATGGAAGGCATGATGATTCTTACCCATGAGTGCAATGCCATCATCCAGAGGCTTG ATGTTCCAGAGAAATTAGAGGATCCAGGAAGCTTCACACTACCTTGTGCTCTTGGACCTATGGTATTTGA GAAAAGTCTCTGCGATTTGGGAGCTAGTGTCAGCTTGATGCCTTTGTCTGTTGCAAAGAAGCTTGGATTC ACTCAGTACAAGAAGTGTAGACTCTCTCTGGTGTTAGCTGATCGTTCAGTGAAGTACCCTGTGGGCATCT TAGAGGACCTCCCTGTGAAGATTGGAAGGTATGAGATACCTACAGATTTTGTGGTGCTTGAGATGGGTGA GGAGGCTCAAGATCCATTGATTCTAGGAAGGCCATTCTTAGCTACAGCAGGAGCTATTGTTAATGTGAAG GAGGGCACGATTGATCTCCATTTGGGTAAAGAGAACATCCTCCACTTTGACATCAAGGGGAAAATGAGGA AACCAACTGTGTTCGGGCAAGCCTTCTACATTGAAGAGATGGGCACTCCTGCTGATGAGCACCTTGAAGA GTTACCACCTGAGGACGACGAGGAGGGAGCATCTCCCTCTACTCATTCCCTATAGAAGGTAACCCACCAT ACTCCCTTGTATATACCATTTCATTTTTGCATATTAGTCTTCTTTTCGGTATCTCTCTCTACTTGACGAC ACAGAGACTGTGTAACTCAAGTTTGGTGGAGGTACCAAGTATTTGATCATGTTTGCTTTGATGTTGTTTC ATTGAGTCATGCATGGCATACCTATTTGCATAGATATAAAAAAAAAAAATCAATCATTTAGTTTGCATCA TTTGCATTTTTAGGAGAGTCTAGAGCATATAGGTTGCATTCACTTGCATTGGGAGCAATGATTTTGAATG CCTTGTAAAGAACACTACGTTGCACTTGACTAGCTTTTGCACCTCTCAAAAAGACTTGTATGTTTCGAGC CTTGAAAACTCTTCCTGAAACTTGTTGATTGCTGAAACTCAGTCTTTGAAGCCAACTACAACCTTATTTG AACTGAACGAACTTAATGCTTCTTGCTCATGGTCCCTTGTGTACTGAGTCATGGCTATACACACTTGAGT TGTCACATCTTTTATACCAATCTTTTTTGACAAACTCTAGTGGTAGACCACTCCCAAAACCTTTTCCTCC TTTTAAGCTTTCATTGTTTGATGAGTGAGGCCTTTTTCGGAAAGTCTTACATGTGCATAATGTTGAGAGT ATCGGGAACGACAATGCTTGATCTTCATTCTTGCTAGATTGGACACTCTATTGTCTAGCTATAGGTGGGG GTGAGTGTTGTGATTATGATTTGGGAGAAATGAAAAAGGAAAAGAATAGACTCTTTGTGCTTAAGTGAAT TGTTTTATTGGGACCAGTATAGAAGCCTCTAGCTCAAGTTTTGAAAAGTCTTGGCCCCCAGCCTAAAAAA AAAAAGGAAAAAGAAAAACGAAAAAAAAAAAGAGAAAAAAAAAAAGAAAAAAAAAAGAAAAAGGGGGCTA GCAAAGTTGTTAGGAGCTAAGAAATGTTTTGAGGTTGTGAAAAATCCCTTGTAGATTTCAAAGAGAAGGA GTTAAAGTTCTTAGGATCTTTTGGTGAGAGATGTGAGTTGGGTTTGACATTTGGGAATGATTGTGTAATT GTATGTTTGGGAAAAGGGTAGAACAATGGAGATTGAGCATTGTATGCATGAGTTGGTCCCTTTCTTAGAT ATATTATGTGCAATGTCAAGGCTACTTGTTTTGAGAGTAAACCACCTTAAAGATCATATGTTTTGAACCT CTTGAATCACTTGAATAAAAGCCTTCCCTTACCCAACCAAATGACTTGGACCAACTGACCATTTGCAAGA ATTCACCTGATGTTTTGTGCTTAATGAATGTGAGAGTTGGTTGATTTGAATGTGTGGATGCTTGATGATG AGTGTAAGAACAAAAAGAGTTAAGATAGGCCTAGAGAAGCTAGAGTGTAATAAGAGAGTGTGCTAGTTGT GTTTCTTTTGGCTATGTGCTCCCTCCTTCAACCTCTCTCCCTATGAGTTCTAGAAAGTTCACTTGTGGAC AAGTAAAAGAACAAGTTTGGGGGAGTTGATAGCTTGCATATTTCTATTGTTTTATCCATTCATCCATGTG CATTTTGATCGTATAGATTAGGATTTAGCCATGTTTAGGTTGCATTTTGCATACATGAGTCCTTATCAGG TATTGGAGTACCACATAGAGTTCTTGGAAACACTTGGAGGCATTTGGAGCTCAAAAAGGAGTGTTTAGAG TGGTCATTGGGCGAGCAAGGCATGGAGCGACCAGTTCGGAGCGACACCACCAAGTCGCTCTGACCTCCCT ATTGGAGCGACCTTACCAGAGCGACAGGGAGAAGTCGCTCGCGGTTTCATCACTCGGAGACGCGAGAACG AGCCCGGAGCGACCTCCCGGAGCGACACCACGAAGTCGCTCGCATCTCACACCCCTCTCGGAGCGACCTC CCAAAGCGACACCCCGAGGTCGCTCGCGTCTCTATGGCGAGACGACACGAAGCGAAGCCTGGAGTGACCT CTCAGAGCGACCCACTGAGGTCGCTCCCGAAGGCCGGAGCGACTTGTCGGAGCGACATGCCGAGGTCGCT CCGCGCCTATTATCTGCTCGATTTCTATTTTACTTAAGGGCCTTTTGGTCATTTCATTATGCACGTTTTA CATTTCTAAAACCTATGTTTTAAACATCTTTTGTAGCCACCAGAGGCAGATTATCTTTTATCTTTTGATC TATTGAGAAATACACAAGAACTCTCTTGAGAAGTTCATCTCTTGGATTTTGATTTGTTATGTTCTTGTGT TCTTGTTGATTTCTTATCTATTTCTCTACATGATTAATCTGAAATCCAATATGGGTTTAAGAGGAATCAT GGAGATTAGTGAGTAATCACCTTTGGAATTCATGGGTTAGGGAGATTAAGGGTGATTAGGTTAGAGCTAG GATGTTTTAGTGTAGATCATTCATATTTCCTTGCTAGTAGAGTAATCATAATGCATCTTCTGAGTTGGCC ACTCAGTTGTTGATCATTAGGCATTTCTCACCCGAAAGGTGTTCGATGAAATGCCCGAGACAACTCTCCT AGGCTTTTAGTATACTTTGCCAAAGACATTTGTTGTTAAAGATGCTAAGATAGCTAATAGACTTGTTAGT AATGATTGCTTTCATATTATTCAACCAAAGACATTTGATGTTTGAGATATGTTAGCAAATGAGCATTCAT CTAGACATAGAGCTTGCTTAGAATTGTGTCTAGGCTTAAGGTTGATAGTTTGATTGATCATTTGCCATCC TTAGTTCGATACTTGATCACCCAAGGTCTAATCCTTATGCCCATGAGTTCTCTTTTCCTTTAGTCAAGAA AGTATCATTCTGTTATTGCTTTCTAGTTTTAGTCATAGTTTAAAACCCATCTAAATCATTGGTTGCACTT AGATTAAGTGAGTACTTGCATTCCCAGTGCTTTGATATCCCTCAGAACTGGATCGACAATCTTCTATACT ACAACATTTGTCTTAGGAGCCTTGAAAACTCCTAACATCAATAATTATGAGATAATATTAAAGTATGTGA TGCAAATACTCTGAAAAGAGTGAATAATAATGTCTTTAGGTATATAGCTAATTATGAGATAATATTAAGG TATGGGATGCAAATACTCTGAAAACAATATAACAAAACTACACATTGTAGTGTTTCCACGTGGGTACCAT AGAAATGGAAAATTAAAACCGAAGTTGAACCAGCCAACAAGAGCATCAGAAAAAAGAAATCAAAACAAAA CTCCACCAGAAAAAATCTTGAAGAGGAACATTAATCTCTAGTAGCACCATCAACGAAGGAAGCACTAGCG GAACCATAAATACGCATAGTTGAAGAGCCATCTGCCTAAAAGAACTCACCACTATATAAGCTAGGTTCAA GCCTTCAAGGAAAACCTTTGATCAACTAATTAGGTGTAATATTTTTTGTATTGAAAATGAATTATGGAAC AAACCGTTGAGCAACATATTTTAAAATGCTTTCTAAATAAGTTTTGAGTGGGGTATTTTTTACGGACTTA CTATACTACCCCATTTGCTTTGAAAGCATATGTCACCTTGTATTTGCTGTGCTCTTATTACCTTTCCAAT CACATTTTATATTTATTTACAAGACTTTGTCCGAATATAGATATTTATCTGCAGTGGACAGATGCGTTTG GGAGCCCATAATAAAGGATAGAGAGACATGCACTTTTGGATGATAGCTGAATATAGAAACTAGAAAGCCA AGTCGATAAACTTATCCATCCCTCCACTCACTCGATCGGTATCGAATGGTGTCGTTCCTATCATCTCGAG GCATTGTCGATAGCCGCTTTATATCTGACACGTGGTAGTAGATTAGCATATGTCCTCTATCATCTTTTTT TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTACTCTATCATCTTGTTACTTACAATACTGTCCAT GTTGCTAATCTTCCTTTACTTGCACTGGAAGAAAAAAGTAATTATCAATCCTAACCGCTAATTTATGATG AATCTAAATAACACAAGACACAAAGTTCAATATTTATGACTAGATTGATAATTATTCTATTCTTTCAAAA GCATTCTTGTTATTTGTAAGTGTTTAGATTCTCTGTGTTTTTTAAATTACATATTTTTGTATTTAATACA TATTAAAAATTGATTATAAATATATCATTTTATATAACTAACTATTTTCTGAAATTTAACAAATAGTACT TGAATAAGCGTAACTTAATTTTTTTAAATTTATCATTCTTAACTGAAAAAATTTACAAATAAATGTAAAA CATAACCTTACAACAAATAAAAGTTCAAACCTTTTTTTAATAGAAGAAATATTAATTTTAACACAATATA ATGATTATAAATATTAGGAGTTGAAATTTCATTTTAATCATTATTGGACTTTTTAGTTTAGGGATGAGTC TATGTGTAATGATATTCATTTTAGCTGTTAAATCTTATATATTAAAACAGAAGTAATGATGACTTCTTTT CATGTGTGATTTTTTTAGTTTGAACCATTCCTAGAAAATATCATATTTTACATAAGTTCGTTATTATATC TTTTAATATCTTTATCTTTTTATTTGAAATACAAATGAATATATTTAAAATGTTCTAACAAAAATTATTT AAAATCTTCTTAGAATCTTTTTAAATTTACTTTCAAAAATTAGTCAGTTTTAATTTAAATTATCATAAAA TATAATTAGAAATTAAAATTGAATATATTTTTGGTTTATAAACGAAAATTTAAATAAAATGAAATTAATT AATTTCACAAATACATTTACTAATAATTTTTAAAGATTTTGTTAGAAATAAATATTTATATTTATTTTAT TTTTTTTTCAAATTTGTTTTCTAATAAAATAAAAATCATGATTTTTTTATGAATGATATTTTTATTTGGA CCATCATTTAAATTTTATATTAAATGTATATCACTAATGCTAATATACATAATATTTTTAACTACTTTAA TCATAATATATTTTATATCTTTTAATTTAAAAAAAATCTAACAAATCTCTTGAAAAAGATTATAATAAGA TCTTAATTGTCATAAATTGAATATAAATATTTTCAACTAATTTTGTAATTAGTAATGAAATGTTACTAAA CGAATAAAATTATATCCTATTTTATCAATTTTATAATAATATCTATCATTTTAAAATAAAAATGTTATAT TGAACAAAGTATGATAAAATTATTTTAAATTGATAAGTTAACATATTTTATTTTCATAAATATAAAATAT CTATGCTAAAAATATAATATGTTGGTAGAACGGGTTATATTAGTAAACTATATAATACATGTATAAAAAT TTAACTTATCTTAAACTTTTTAATATACAGTAATTTATTATATAAAATTAATAAAAATTAAAAAATTACT AAAAAAATCTAGCGATTTGAATTATGGATCATGATTATAATAAATTAAATACAAAATTATTTTCATATAT GTTGTTTCATGCATTAAAAAATTTAGTTTAGTAATCAAACGCAAATTCAATAAGACAAATATATGATAAG CAACATATATATGTGATGATTTTAATTTATAACATGAAAACTATAAAATTATTATATTTGTCATAATTAT ACAAACATTTAAATATGTGAGTAACATTAAAATATATAATAATTATGTAAAACAAATATCTATATATATA AATGTGAAAATATATACCCGCACAGTTGTGCAGGTGGAAATCTAGTTATATGTTTAATAACCCTTTTATT ATTATACGAATACTATTCATTAAACTATATTGGAAGTTGCATTACCCTACAATCGGATTTAACCAATTTT ATCAACATCATTTTTATAAGTCCCGTTATTAATAGATTATGTGTTATACTTATTTGGTTAACAACATAAT TTAGAATAACTAAAAAATGAAAATGATAAAAAAATGAAAATGATCAATGTTTGTTACGCTAATGGCAGAC ACGTAAAGACCGTACAAGTCAAAATCATTGTATTAAGTCACACAATTCAACAAAACCATCCACAAGAAAA GGAAAATTTCATTTTTCTTGCCACTTTTACAAGTTATTGACACAATTATTACCTAAAATAGTCTTTAATA GGAGAGACTTAATTCACCAACCCGAATTCTATAATGGTATGTACGGCATTAATGTTTGAAGAATAAATCG CTAAATCATTTAATTACTCGTGATCTGTATGATTAATGACGTGAGGCATTTAACTAATCACATTAAACAA AAGCCAATGATCAATGGCATAACGGTAAAATAAAGCGAAATACAGGGGTCTTAACTTAACTAATCCTCTT TACCTTAGCTTCAAAACTCAGCTCCTTGCTACTCTTCTCTCGGAACGAAGACAGTTTTAAAGGAAGAACA AAAAAAAGCAACAGAAACCCTAATTCGCGAAGAACCCTAATCTCAAAATTTATGTATGTAAATGCATCTG TAGCAGAACGGCGGTTCATCGGAAAAGAAGCCGCCGCTTGTTTACCTTCCGATCCCAAACCTAAGATCAA ACATCATCTTCCTCAGAGCCATCTGACCGTTGAAATCGCTGATTCATCGTCTCCGCCTCAGTCTTCTCAC CCGTTTGATCTCCGCCTGGGCTCGATTTTGTCGTTTGTGTCATCATCGCTTCCGTCGATCCCCTCCGCGA CGAACCAGAAGCTCCTCCGCCAAGTGATTCGAGTCCGTTTGATATGCTTCCACCTCCGTTTCCTGCTTCT CCTCTCCGTCCCTCCTCTCTACGTCTTCTTCCTCTTGATCAGTTTCCGCTTCTTCCTTGTCTTCGTCTTC TCCATTCTCGCCTTCTCCTTCTTCCTTTCCATCTCTCTCAAACTCGCTCTTCCTCGCCTTCCTTCGATTC GCCTGATCATCGCTCGCTTGCTATCCCTCAAGCTGAGATCATCCTCCTCCTCCTCCTCCTCTCAGGTTGT TTGGTCAATCGGGTCAAAGCCCGTTACAGAGAAGAAGACCGATTCAGGGTCTTGGGTTCACAAGTACAGC TCCGGGGATGTGTACGAGGGAGAGTTTCATAAGGGGAAGTGTTCAGGGAGTGGGGTTTATTACTACTCGA TGAAGGGTAAGTACGAAGGGGATTGGGTTGATGGGAAGTATGATGGGTATGGAGTTGAGACGTGGGCTAA AGGAAGCAGGTACCGAGGTCAGTACAGGCAAGGGATGAGGCATGGAGCTGGGATCTATAGGTTTTATACA GGGGATGTGTATGCTGGTGAGTGGTCTAATGGACAGAGCCATGGGTGTGGTGTGTATACCTCTGAGGATG GTAGTCGTTTTGTTGGAGAGTTTAAATGGGGTGTCAAACATGGCCTTGGTCATTACCATTTCAGGTGAGA AGTCATCAGTTTTCGTTTGTTAACTTTGTGCGTTCTCATTAATTAACATGCCAAGGTGAGGTGGTGTGGG GTTTGAACACTGCAGAGTCGTTTAACTTTTGTAGAAATCGTGAAGCTTTCTGTATAAGGGCCAACTATTA ACCAGTTTGGAATTGAAATTAATGTGGTTTCTGATAGTTTCTGACTTCGAATCTGAACTTTATTGCTAAG CCTCTAATTGTGTTTTGACTTAGGATGCTGTGTTAGGCCTATGTCTGTGTTAGGTCTAAGTTTATGGCTT TCGATTTTGAATTGTTGATGGATTGTTAGGCTGCCTATACGTTTTGTTGTTGGCGTCACTCACCTTTTTA GGAGCAAATCAATTTTTGAAGATTAACTATTACTGCCATTGATAAATGCACGAGATAATAAATTTTAAGA TTCTGTCTTTCAGTTCCTGTTACATTTGGACCAAGAGTTTTATGTTGGACGGTAGTTCTTACCTTTGAAA CATTATAAGTCTAGGATGGCCTCAAGGTTCAAGCTTTTTTTTTGTTTGCTGGCATAAGCATTGATCTTAA AATAATTCGATCGGTTACTGTGTTGTCTTCTCTAGTGATACCTTCCTAACTAACTTGAAACTACACCTCT GTTGCAGAAATGGCGATACCTACGCTGGAGAGTATTTTGCAGACAGGATGCATGGTTTTGGAGTTTACCA ATTTGGAAACGGGCATCGGTATGAAGGAGCCTGGCATGAGGGGAGAAGGCAAGGGCTTGGTATGTACACA TTCAGGAATGGTGAGACACAGGCAGGACATTGGGATGACGGTGTTCTCAGCTGTCCTACCGAGCAGAGCA CCCGTCCTGGTTCATCCTTTTCCATCAGCCATTCCAAGGTTCTCGACACTGTCCAGGTAACTTATAAGCT TATCTTACTCCTACTAATACATACAAAGTTATGTACTTTGAATTTTGTTCATCTCTTGAGAAGTTAAGAG ACCAATTTGTAAAAATAGTATTTAATGTTCATATCATTCAACAGCAAGCTAGGAAAGCAGCCGAGAAAGC ACATGAAGTTGTGAAAGTGGAAGAGAGAGTGAACAGAGCAGTGATGGTAGCAAACCGAGCAGCAAATTCT GCTAGAGTTGCTGCAACAAAGGCTGTTCAAACAAAAACATATTACAGTAGTGGCGGCGATGATCCCTTAT GAGTTCGTGTGTCAAAGCTTTTGATATAGTCACAGTCATGAATCTCACCTCGAACTTCTTCGGTGACATG AGAGAGAAAAAGAGAGACATCTAGAGAATGGCAGTCAAAATTCGCATCTCCGTTGAGATTATCTTGAAGG TGGAAACCACTTGGAACCAATGTCGAGATCTCATATAAGTATTAAATAAGAGATCTGGCCATGGAGCAAG CAATGCAGGTTTACTTTTTTCATCTTTTCTCCCAGCTCTTTTCTTTTTTATGAGCAGGCTGGTTTATAAG CTGTACATAGGTTGTTGAAGAGTAAGCAATGTGTGTTAACAAAAGATCTTTGTAACAAGCGTAACCCATG TAGAGAAGCAACAAAACATTGTCTTTTACGTTTTCACCGTGTGAATAACAACATCTCTTCTTACTAGATT TCTTTTCAACAGAAAACGACAAGTTATAATCAACTTGACACAATCAACCAAGATGATGTATAATGAATTG ACAGAAGATTACATATATAATGGCCAATGACAAGTGCCAACATATTCATCTGTTCTTGTAAATGGTTATG GTCTTGAGGTACGATCAGTGCTGTCATAAGTCCTAACCATTCAGACACAATTAATGAACCAGAACTATGA AAGAAACTAACCACAAGCTAGAAGAATTAAACAACTGGTTTCTTGTAGCCATAGCATAACCCGAGCTTTA CAAGAAAAAAACAGAGCTTGTGTCACATAGTTAAATGGGCCCAGGCCCATGAGACGATTCTCTCCCGCTC TCAGGTCCGTTTTAGTCTAACATGACCGGAGAACTCCCAAAAAAAAAACTAGAATAAGAGAAGAGATGCA GAAATCGTTCTCGTTGATCCAAACGGTGGCAATCTCCGGCGTATTCTCCGCCGTCTCTTGCTGGTGAGTG ATTATTCTCCCCCCGCCCCCTTAACTCTCATTTCTTCAATTTAGGGTTGATAATAATATGTCGTGTGTTA ATTTTTCAAGGTATGGATTCATGTTCGGTAGAGAATCGGCGAGAAAAGAGCTGGGCGGTTTGATCGAAGA TCTCCGTCGCGGAGGTTCGGACTCTGGTTGTCCTCCCCATTCTTGAGTTAGGTGACGACGATAGCTCTTT TTGCACTCTTGTTTGAGCAATTATCATTGTATCTTTTGTTTGAGTTATATGAAAAATCACTAGACATTTA CTATCAGTGTAAACCACATTGATTAAGATCATAAAGATTGTAACACTGTACTCTCTCATCTCCCATGTTT ATTATGTATTAGACATCAAGAACATGAACTTTACAATCAGGGCCGTTGATTATTTGAGACTAAATGATCA ATACATATTGTTATTTGATATTTAAATTTGGGGACGAGAATGTTTCATCTCATTATGTTCAAGATCGCCT ATGGATACAGTATATGTGAGAAATTAAACTAGAGAAGTCTCTTCAACCTTCTCAATGATCCTCCTGCCTT TGACAAATCCCACATAAACCTCACTTCTTGTTGTGTCTTCTTCAGAGAGTCGTCTATTCCTTCATGTTCT TAACAAACTCCACTAACTGCTGCCAGTTTTGACCCGCAAACAACCTCTTGTTCATTTTTAGGTAAGTAAA TTGTGTCGACCCCTTTCCAGAATCTGATCTATTCGTTGCAACCACTTGTCAGAACGCGCTCCAGTCATAT CTCCCTTAACGCTTTCTCCCCTGCTAGCTCAGTTCCAGCCTGCCTTGTCACCTTCTACACTTGTTTAACC AGACCTTCCGGCGAGCAATTTGCCGTGTTTGCGTAATTCAGGTTGTTCTCCATGCAGGTGAAGCTGAACA CAGCACCATGTGTGTTGAACAGCTTACTATTGGTAAGTACCCGTCATGGTTTATTGTGTTGTAAATTTGT AATACCCATCGGTTAGCTCAGCCGCGTTTGACCTGGTGTTGTAGTGCCAGTATATTCCGGCTACTTTTCC TGATAGCTTTGCCCCGGTTCCTTGAAAGATTGCTTTCGCTGAAGCTAGAAGTTTGTGTCCCTGTTCCAGT AACTTCCCTGAATACCAATCCATGAAAAACTTTCCATATTTATTTATACTGTTCCATGTTCCATCTCTCC TGAAAGAACTCAGTATCTTCTGGAAGGTTCTTGTACTAGCCAGCATCATGAGGCCCACTTGTTCCCCTAG TTAGTCTTCTCGACTGATGATTCAGCATATGCTTGAAGCGACGATCTCAAATACTGCAAATCAAGAAGTA TATAGTTATGTATAATATTGGTGCAGTTAACTGTACACTATACAATATCTCACTAGCTTAAGCTATACCT TTTCATAGCACTGAACTCTCCAATTCTCGAGAACCTCCGGGTCCCATTGCTCTCAGGGTATGATGGGTAT CTCAACTCTCCACAAGGTCCCATTCCTACTTGAATTTCCTGCAATACATGAAGAAATGATGTGATTAGGT CACTGCATATATATATACTGCCCATGTCTTATATGAAGTTGATTATTTTTTTCTTTAAAAGAGTCTAGAT GCTTGCTTACCGCAAATGACAACTTCTATGTAATTTCTGAATCTTTCACGGAAACTCCTTATAAAATCTG AATAGACCTGGATAGGTGTACATGCACATAATCACATCCCAAGGAGATATACTCTGGATTCCTTCTCCCA GATTTGTCTGTGTAGACAAGATCAGGGTTCTTACTGATTTCTTCAAGCACCCATGGTTGCAAGGGAATAC TAGATTTTAAAAGAGACAAACATTAGCTACGCTAGAAGTTTGAGACAGATTTTGTTCAAAAGGGAGAAAC TAAAATTGCTTTCATTACCTGCAAAAGGCTCCAACGTTTCTTCCACATTGATGGGAAGACATAACGACGT GGAGTTTGAGACCGTGCATCTGAACCATCTGTATAAGCGCGGCATAGCCTTCCCAGTTATACTTCATAGG TCCATCTTTCTCAATCAATTTCCACCAAGCAAGCACCAACCATTTACAGTACTGCCTCAAACAGGTACGC TCTTCGAACCCTCATTTCGTAGTTAAGAAACAAATTTGTGACAATAACTGATCGTATAAATTATTGAACA TACATCCCCCCATTCTCTATCATGATTCCTTATGTTAATTCAAAGACACTAGTAATGTATTCTTGCCAAG CATATAGATAGATACATGAGCTCAGTTTCTGGTTTTGTTCGGTTAACAATGATAATATGCATGTTGTGAG CCTTATGACCTCTCCGGACGCTTTAGTGCGACTCTTTGTTTCAAGAGTCTACGGTACGCAGCATTGTAGG ACAAACATGTAGTAATATTATGTACATGCAAAGTTTTGAGCTTTATTATGGACCGATGGTAGAAAAAGTA CAAAGGTTATGGATCTGTTCATACATGCATCTGCAAGAATCAGTAAAAAAATAATGAGTAAAATGAGTTG ATATTTTCTTTTCACGTACATAGTTTCTGACTTTGATGTTCGTTGCTTGATCTAATTTAGTCTACATCTG ATTAGTGCTTTGTGTCTTGACGTTGGTTAGAAAAATCTAGTGTGTGAGTTAAAAATCGTGGGATGGTGAC TTGTTTTATTGACTTAAGGGAGTTTGATACAGTTGAAATAATGGTAAAATTCATTCATGTGTGTATTTGC TGGGGCTGAGCTTGAGTGAATGTCGCTAATCTTCGTAGACAGAAGCATATAGTGGCTAAAGCAGACTATA TGGTTTGTGGCTAGCTCAGTGGTCATATGGTTTTGTCACCAATTCATCATAGGCTTAAGTTGTTAAACTA AACAAGTCAGAACCTTAACATCTTCGAAACCTACCACTTAAATTATTACTTACCTATTTGCGTCACCAGA TAGCATGTGTATTTAACTCCCATGTAGAGCAACTGGGTTTGCCCGGCCCCTGGGAATTAATCCAGCCTTC GGGTTTACCTTGGGATATCAAAAAATAGAACCCTTAACAATTAAGCTTTATAGTGTCATTGTCTTGCTTA GATATTTTTCTGCTTTGTGAAATGTGATAAGTGTTCATCCAATAGGTATGTGAGAAAGTTAACGAGTTTG TATTTTACCAATCAAATAAATATCTTTTCGCATTAGTACAAGATATATTCTCCCACTCTCCTCTTATGTT GAAGCATGGCAAGACATAGTCTCTTCACACGAATAAAACACATTGTGTAGAGAGCCAACTCGAACTCTGG ACTTACTCCAACTAGAGTACTTGACACTGATTTTAGAACACAGTTCCACTAGAATTCGATCGTTAGCAGC TGAGTCTCATGAATCAGGCCGTAACGGAATCATAAGTGTGATACCTCAGTTAAACAGCGGCATGTTTCGT TAGCATGTATATTGGAGGAAACATTATGTGATGAATTGAAAGATATGTTACTTTAAACAATTTCACCAGG GAAATCTATATAGCGTTGATAAACAAAGTTTAAGCAAAAAAGAAGAAGCTTCTACGTATTGTGTTCTTTT CAGCTAAATCTATCGAAACTCCTTTAGGTTCTGAGTGAAAGGAAACTTAAAAGCACTATCTTAATCTAGA TTTGGTAGTTGGGTCACGACACTATTCTATTATGTTTTCACCGCTCGCTTCTCTTTAAATGCTTCTCCAG TTGTATGGGAAGAGTGTGGAGTTTCCATGTACGCGCCACAGCAACCGCGTGAGTCTATAATAAATAACGG TCGTTTGTACTTGCTGACAGTTAGTTGATTTTAATTCTACAAGTACAAATGAAAAGAAAAAAGATAATGG CTCATATACGATAGTGCCATAAAACGTGTTCCATTTCAGTAAATTTCGTAATTAGAGTAACAAATGTTAA CTATTGTGGAGGTATAGTAATTGGTAGATATATCAAAAATATGTTCCTATTTTCTACCGAAATGAGATAG TTGACTCATAGCATGCAAATTTACGAATACATAGTAGTACAATCACAAAAGAGGTGTTTAGAATTAAAAT TGTATTGATAAAATGTTTTAAAATATTACAAAGAGGATCTTTACTTTACTAAGAACACTCTTTGTAAACT TGAGAGATTCTTCGGTACTTAACTCAAATCAATTGGCTCGTATTACAACACACTCCAAACCTTTTTATTT ATAGTCCAATGTCTAAAAAATATTTTTTGGAATATCCTTTAGAACTTTAATGTCTTACAATATATAGTAC ATAAATTATATCTTACATTATTCACCACACATAATTGATGTTGACTCTTTTGGCTAATATGATGACATAG ATATCATAATATTAATATTATCTATGTTAACATCAACTAAGTACGACATATATTAGTTAAAAGAGTCAAC ATTAATTATGTGTGGTGTATAATATAAGGTATAATTTGTGTAGTGTGTATTGTAAGATATTAGATATCTA AAAAATATTCTACTACAAGTCAGCGAGTGTCGCCGTATGCAGATAAACAATGCTCATAATAATCAATCAT AATCCTATGTAGTTTGGACGCCTAAATCATGAAAACCAAAATAATGTTTTTGGTACGATCTATTTTTCTC TCTCGTAACTATCACGTAGCACTATATCCACACAAAGTTAATGCCTCATTCTATATACCCATCAAATGAA TATTAAATACCAGTTTCCCATAAATTCAAAGTTCAAATCTTATTTACCCCCGAATTAAAAATTCAAAATC TATTCACCCTAAACCATTATTAAGCTTGGCTTAATGTGTACCAACATATGTTTAACCATTAAACACCAAT CAAAATCCAAATTAAACTAAGAAAATTCCTTATTAAAGCGATTAATCTCACACTCACTGGAAATAAAACC CAAGACTTAAAAGATAAAAATCCCCAAATCATTAAAACCAGTAGGGATAAAATAATCCGATTCTTCTCGA TTTTGATGATTTGGGAATTTTGATGAGTGTAAAATGAATACCTTTTCTAGAGTATTTTCTTGGTTTAATT TGAGTTTTGCCACGTATATGGTTAAGAATATAATTGGTACACATTAAACCAAATTTAATCATGGTTTAAA AGTGAAATTTAAACTTTGAATTCACGGAAAACATGTATTTAACATTCGGGTACATAGAATCAAACCTTAA CTTCGTGTGGACATGGTACTATACCAAAGTTAAGAAGATCGTTAACCATATAAACAAAATAATATCGATG ATAAAAAAGATTGAAAAATATTGAAAAAGTCTTTCGTGTTATTTGGTAAAAACAAGGACAACAATAAAGG ATTCTTTTACAATTTTATTGAAAGAAACTCAAATGTAAAAGATAAGAAGCATTTATGTTTGAGAAGAAAC TAAACATTTGGGTTTTGTAACCAAGCAAAGTAACCTCCCAGAATGCCTAACTCTGTTATAGACAAATGTT ACACAGATCAACTTAAAAGCTCTCTTTGGGAAAACCAAAAAACACATAAAAAACTCACTCTTTGCAAAGT CTAGTTCTTTACAATAAAGCAATAACTTCCCAACAGCAAAAAAGAAGAAGAAAAGATCATTCTATACGCA AATTCCTTGCAGATTCAGATTCCATGGATCTGTAATCATCTCGAACTCTAATGGCTCTCCAATCAGACTC TTCTTTGGTCTGCCTCAGAGCCATGAAGTGTAGTGCGTCACTTCTAACCTGGTATATGTGGCATGCCCAC GGATACGAGTCAGGTGACGACCAAACCTTCTGTTCCTCAAACTCTGTCTGCTCAGCTAGAGACGTCGGCA TGCAATACACTGTGTTGGGCTCTGGCTCCTTGAAACTAGCAACTGCAACGCATCCAGGAGATACGAATCC TTCAGGAGCCCGCGGATGCCAGATTGATACAGGACTTACGTAATCATCTAAGCAGTTCCTCCACACCTGA GAAGTGAATAACATTATGTATCACTAGTCAAAAGACACAACTCAGGTTTGATTCGGTTAGCACTTTTTTA TGCTCTACACTCGCTACAAGTTCACGGTTGAGAAAAATTCAATGGATTAAGGGGTCATATTAATTGATGA GAGATACTTACAAGGTCATAACCCACTGGAAGTGCAAACACTCCCTCGGTGTTATTGTAAACAGCAGCAA CATTTGGCGGATGGCTACCAACATGAGCTACATCACCCACTGACACAAATCTGGCAAAACAACAACACGA AACTGCTTCAGTTTCAAGAACAATTGAGCGCAACTACAGTATCATCATTAGCGTAACAGATAATACTTAC CCCTCTGGACAACTAGGTCTCCAGATAGTGCACACTCCTCCATCTTCAGAAACCTGAAAGCAAAAAATAA AAGTAAAACAATTGTAAGTAAACCTTGAAACAGTTGATCGTGTGGGTGAATTCTTAAAGTTTCGTCTCAT AAGAATTCTTATTTGACATCTATTGAACCTCAATGACACCGAGAGCAATCAAACGAAAATTACCTGCTTT TTGCACAAAGTACATCGACCTTTGGATTCTCGCTCACTACTCCAGATTTTTGAGAAATTGATACTATGTT TGACAAACTTTCTATCATCTGAGACAGAACTTGAGGAAGAAGAAAGGTCTCTTGATTTTATAATAGCCTT GTTGCTGTACGATTTCGAGTCTCTTCCATCAGCCTCGTTCCAAGCAAAATACACATGTCGCTGGCTTGAA GGAACCTGTGACGAGAAGATATAAAGTGTATTAGGTAGGTGCGTTGCATTCGCACGAGCTTCTCAATGCT TGCCAGTGTTAAACATGTTTATGGTCAAGTCGATATTATTATAACACAGAAGACCAAAACATCTTGAGAA TGGTCATTTCGAATGAAGATCTCCCTTTATTCAAACTCAGTTCATCTGTTTCAAATATTGATCTAATAAC TATGATGAGATAAGGAATAGCAATGACCTTGAGAACATGATTTTTCATGTTAGACTGATATGCTTTCCAC ATTTTGCGCACTGCTGAACAAATTCGAACAGCTTGGGGTTCTAGTACATCTGATTCTTCCGACACGCTGC ACTTAATAACCTGAGCAAAGCTCTCTGACTTCTGAAAGGTCTTCAGATGCAGTATGAGATGCGAGGGCCT TTGGCCACCTGCCTTTGCCAATTCCAACGCCATAAGTTCCTCCCAAGGCACATCCCACATAATCTTGCTG GGTTTCTTATCCATCTTATCCAGATCAGAGCACTAAATGGAAGTAACAAGTCAGCAAATAAAGCAAATTT AAGACGCTAATGTGAAATGGTATGGTAGTGGGTCTGACCTGTAATAACACAACTCTCTTGTTGGTCACAA TGACAATGCGTTTGTATGGAACAAGGAAATGTTCTTCATAGCAATCAGATAAAGCGAATTTTGAAGGTTC CCTGAATATCTCTGTACAGCCAAAATGCCGACTTGCTTCCGCTAGGTGCAGGAGCATCTGCAAAAACAGA TAACAAACAGAAATCAGAACCAGCTTGGAAGTTTGAGCATGAATGGTAAGCTTGACCAAAAGAATGCAAA TTAATAGCTTTCTGGTAACATTAACAACATAATTATCCTCAAAGGAGACTTAGATGTCAACAATTATATT TAAATAATTCATGCTAGAATAGCCGACTTGTAGTTAGAAATTTTGGATTTGGTCGTAGACTAAAGCTTCC AAAATTTCTCAATATGCAGTCTCACTAATAGACAATAAAAAGAAAGTGAGGCAGTACCTGGCCTGTAGCT TCCTTCTCATCATATTCCCTGAGTATACCATCAGCATGAACTGCACGGGGATTTCTAATTCTCTCCAAAG CGGTCCTGTTGCTCAAAACCTCCAAACATCGGGTGCAGCTTGCTCCAATTCCATCAACAGTCAATGAGAA AAAATCCAATGCACCACTCATCGGTTGTACGAAAAATCCTAGGAAAGCCCGCCCTACCCCATGGGCAAAC CCTAAGATACCATTTTGTCGGGCACTCTCTACAGGCTTCGTAACAACTCCTGATACCCCGAAGGCAACAC CCTGTGCTAGGGCTTCAGTTCCTTGAACAAAAGCATCACCTACACCAGTGATCCGCCTCGACCAAACCTG ATCCATTTTTCAGCCCTCTATTAGGCAAACTGCCAAAGTAATCAACTTAATTTTGTTGCAAGAAATATGT ACCTGTCTTTCCCTCAGATGTAGGAATTGACCATCAGTTGAAAGCGCCGCAAATCCTCTACTAAGAGAAG CCAATGTTGAGCTAGTCATACCCAAAACATCCACTGAGAAAATTAAATGTAAGGGATTGTGGATCAGATC TCTCCATATGCGATTTCCGATGGCTGGAAGTATTGAACTTTTCCGTATGAACCGATCTCTGTGCATTACT CTCCTTAGATGGACCTAAACGTAGATATTTTTTTGAAACATTAGCAACATTCTCGCTCTCTTTTTTCAGC AGTAAATATTCCGAGTATAGCAAAATGATGAATTAGCTTGTGGTGCCAGGAAGTAGAAAGGCTTTCTAGC CACAAGTTGTTCCATGACAATCCAAGTAAAAAAAACTCTCCTATGATGTCGTAAGATCTTCTGAGCTACT TATCCCATGTTGGGAGTCAAAAAGGAACATGACTGAAACCAGCTCATGCTTCAGCAGTTCTTAATTTACA ACTAGTTTTCAGTTCGCACAATATATAGCCAGCTAATCTACCATGAAATGGAACCACGTATCCATAGTTA GTTCTATTACTAGACCGTGCAGGATGTAACGCTAAGAGAATGATTGTAGTTCACTATTTCATTTATGGTA ATAACTTCAAAGAAAATCAATTACCTGAATTTTGAATGCATTTCCAACAGCAGACAAAATCGGGCTCCAA ACACCAAGAATTCCATGAGGCCTCTGAGCTGGCGCTGTTTCCAGTGAGACCTTTAGCCTTACCTCTGAAA CATCTATGAGGCTGAAAATCAAAAACAAAATTAGGTTTAAAATTTGCTCGATTTGCATGCCAAAATGGCC ATATACTATAAATTTAATCCCCGAAAAATGGTAAAGTTTTATAGAAGGCAAGAATACTTTATATGTATCT CAGGATCAACTTGCGCGACACTAGTACTTTTCGGGAGACGATCCATCTGGAGCTTATTGCAGAAGTCAGC CGAAGCCCAAATGATAGGCTCGTGAATGTTTACTCGCCAAGTATTATCTGTCACCTACCAATCAAATAGC AAATCCATCATGCACTTCAAATAGGATCTCATATGTTTGAGTACATTGAAGATAAACCTGACTAGAATAC ATACCCGTACATATACATATGGATACACTTGAATGCCATCAGTTTCTTCATTACACATAGTAATTGTCAT CTTAAGCACTGGTTGATGACTGTCTCCAGTGTTATCTGGTGCCAGTAGAACTGGCATTAGAGTTAGAGGT AGCTGGTTATCAATCTGTAAATTGCCCAGAATGACTTTGAACCTGTAAACCATAGAAAAGAGTTGCTAGT TCAGATTTCCGAAGGTATTTCATGCGGTTGCATCGCTTCCTAATACGAGAGAACATATGACACTGAAAAA TTTACACGAATGTGCAACCTAAAGACCACAAGTTTTGTTGATAACACCATGTTGCCTAAAATTAGCACAT TTTGATTCGTATTTTCCAAGCATAGGAAAGAACATGAAGTATATTCATATTGTAACCCATTTATACGTAA AAACAGACAAAAAAAACAAAACAATACTGCAATATTTGAGTTTACCTGCTAGTTCTTCCCTCATCATACC CAGTGGAGTAAGATACGAAAACTTTCTCAAGGTAAAAATATGATAACTCTTTTGGCACGTGATCTACAAG AGAGATCCCCACTAGTCCCATTTCAATTATGAACTCCAGAGTGGTGGTCTTTTGTTCTGAAGGTGTCTGA CGAGTAGAATATCTATTATTCCCAACCGATGATAAAGATATGATTTCATGAGGACTCTGTGAAGTACTGT CATCATCAGTGAATCTAGCAATCTTGATGTCACCAATTTCTTTAACATGAAAGTTCACCTCTAAGTCCCT ACACAATTCAGAATCCACAACACCATTTTCCATGTCTAGTCTGAAAACCCCAGAGCGGTGATCATTTTCA ACCTTAGCATCCAAGAATTTCTGACCATAAGGATCTTCCCAAGCAAAATTTACTGTCGTAAGAGGTTCCA ACAAAACCCACGAATCTTCACCAAAACCTGATTGGCGGACACTGATTCTTTTGACAGCTGTTCTATTCTC AACCCTTGTTTAAGAAGTTTAAAACAGAAAAGAAATTAGTAAATTAATGATGGTTTCACAAATATGTATT TACTAATTGTAGAGAGGATACCTCATAGGACCATTGCTTGGTCCAAGTCGAAATACAACAATAAAACGTG ACCCTTCTTCAAATCCCCGTATCTCTGCTTTCAAAAATCTACGAGCACCATTTTGACACCTTAATACAAG AACAATTGTGTCTTCTCGAGCAACTTGAACAGGAAATGACCACTCTGTTTCTCTTAACCGAACCTGAAAA TAGGCCAGAGAATAAAAATTATACATCATTAGATAATAACAGAGATGCTCTTACCTCTCAAATGAAAACA TACGTGGTGGCCAGGAGAAAGCATCCACATGCCAAACAATTTAACAATATAAAACATAATCGATTTGCAT TCAAACTTTAATTCACTGCTCACTTCAAGAAGTGTCACTGGTTTGACTGAGAACATATCATACTACATGC TCCAGTGGACATCCTAAACAACAGCCTTATTCATTTTTTTCTCTCGCAGTTTTGCAACTCATTGACTAAA ACAAAGATAAGAGGAATAAAAATTAAAAAAATTCTGCAACATAAACAGCTCACCTGGAGTTCATCTCTCC CACTTGGTTGGAAAACAAAGGAGACCCGCGAATCATATGCATTGAGTACCTTTGGTTCATCGTCACTGTT AAGTTTAATATATATATCTTCACCGATCCTGTTGGTGAAAGTCATGAATGGTCGAACAGATATGATCTGC GAAGTAAATTCGAGTCAGCAAGTAATAATAGAGAAGGTGTAGAAAATAAACTGCTTATTACCTTTGTAGG AACTGACTGATAACCGCAAGGTTTTGTAGACAGAAATAGCCGCATACATTTTCCATCGGGATCATACGCA TCAACATCCAAAGATCCATCCTATCAAAATAAGTACGAATCATAAGAATGATAGGGGAAGCAAAGCTCAA TTTTAGAGGAAACTAGTCTATCGAACAAATAAAATAGCATACAACTGACCATGTCACCAAGGGCAGAAAG ATCTTTTGCAGGACCATGTTGCTGATTGCCAAACTGAGATATAGACACTGACATGCCCATATGTTTGAAA TTCAAAGTAGAAGCAATTGTATGACCTTCATATATATCTTCTTCAGTTATCTCCCGGACTACTTCGTCAT TTTTCTTATTTCGAAATGGAAGACCAAACTTTTTTGTTTTCTTATTCCCTGGCAGATCTAAAAGTCTAAG TGTAAGCGAGGGACATCTTGCAATCGAAAACCAGAACGGAGCATAGATTCTGATCATCTTCGTCAAAACT TTCTGCTGGTCATCATAAGTTTGCTCCAGTGTTATTTGAGCAACCCTGTTCGCATATATTCAACAGTATG AGACCAAATAAACCAGAACAGCAAAAAAATTGTAACACCTTAGCAGAAAGAAGAAGACCTTCCAGTGGCA GAACTTCTCAGATCAATTGTCTTCGCAGGGACACCATTTGGATGAGATACAAGGACAGCTTCCTGCCAAA TTCGATAAACCAAATAACTAAACAAGGGAGAATAAAAGAAATGGAACAACAATGTGTTCCTAGCTGATGT GAATCTAGGTTCGATTTCCAAACTTACACGCATTGGTAGCCATACTCTTTGCGGCAGCAAGGAAAAGTAT AAAGGCTTCCTTATATCGACAGTATGCACCTTCACAGTTTCTCCAGAACCAATGAATTCTCTGCTCTGAG AATGACGAATCAAATCACCATTGTCTTGCTTCTCTAGCACTGAGTACTCAGCTCCAAATGGAAGATAATT TGCTATAGAAAACGGTGATTTGACCACAAGAGTCCAATCCTGAATAGGGTCCGAACGTATATCTTTAGCG ATCTCTGTTGCTTGGGTTTTCAAACAGAACCAATAAATTTTATTATGTCCGGGAGAAGTACTGCTTATCT GAGTACAGCATAGCAAGTGCTCAGATTCAGTAAGAGACGATATACATATTTCAGACTCTGATTCACAAGC AACCTCTGGTTCCTCAGGCCTTGATACCACAGAACTCCAAGAATATTCAGAACCATCAGTCATTACACAC TTCAGCTTCAGGACATACGATGCAGACTGTGTCAATCCTGACAAGGGAACCGGTAATATATCGCCAGGCT TCAGCAACCCAATTGATATATTTGGAAATGAGTGGACTTTAGCCTCCAGGCAGAGGTCAAGAAGGTACTC AGTATTGTTTTCCACTGAAACTAGAGACCTGACATTTACGTATCTGTTTCCATCCTCCATACTAACTTCA CTTGCAACAACATCATTTCCCAACCGCCAGCAAGCAGCAGGTGAAGCGTAATTCAGCCTCACCGTCGTCC AAGGACCCTCAATACTAGGACTTACTTGAATAAATCCAGATTTCTTTTCACTTGAGGATTTTCCTTGCTC CACCATTTTCGATTTAGCTGGCAACAGCACAGCACATCTTATTTTTCCACAGTTCTTTCTTTGATCCCCT TGGTTCATGCTCTGCAGAAAACATGAAAAAGGTAAGAAAACTATTGCATTTATCTTTTGCAATCTTTGAA CCCAAAAAGCCGTGACATTTGCATTTTTAATATCATATTTGGACAATGAAGTCTACATAGGCGAAAGGCA TTCAAGTTGAGGTTTTTTACCATGGTAGACAAGTCTAACCAGACAAGGTCATTGGCATAATTGTGCTCGT ATTGGTTGTCCTTCATATATCGTGCTACCTGCTTGCAATGGAGCTGAAAATGCGCCAACAGGTGCACCTA ATTTATATACCAAAAATGAAAGAAACACTTAACTCAGATTTAGTAGTGCTTGAGATGTACGACGAAAGAA TGAAGGAAACAAACCATTTCCGACGTCCGACACTATTAATTCCAAGAGATAGTCATCCTGGAAAAATAAA AAACAATAAAATATCAAAGCCGCAATAACCTTGATCTTGAAGACCAAAAAATAACAAAGAGAAAGAAATA CTCTTAATATAATTTATTCTTAAGTTCTTGTACAAGAGAGGTACATGCACCAAGATTAGTAACTAAGATT TGCCAAAGTTATAGCAATGCATAAACTGTTTCAGAATCAATCTGAAGAACACAAGTAGTAGAGATACAAA TGAAATGGTGATGGACATAAGAATCCACAGAGACTAGGAACACGCTCGTTTGAAAAGAAACAGAACTGCC AGCAGTATTCAGGGGATAAAATAAACATTAGGCCAACAAAAGAATGTTAGACATAGTGGAAAAGAGAATA CCAGCGAGTCAATTTTGAAGAAAAATATTTCACTCCAGTCAACGACTTCCAGCTCAGAGGAAAACATATT TGAAACACTTCCACAAGTACGTGCACATTGCTGGCGAAGCACTGGCTCCGTTGGGGAGGTCTGTTTGGGA GAGAGACGTATAACTCCAGTGTATTGATGAGAAGACAATCCAGAAATTCTTGGAAGCTACAAAAAAAGGT TATTCCATATAACACATTCTCCAAAGAGTCTATGAAAAACAAATATCATAAACTTAGTAGAAAGAGTCGC ATGGAGCATCAAATGAAATCACTTCCTTGCTTTATTACCATAGAAAAGTAAAAGAATAGGAAATAAAAGG AGATTCATGAGAGCCTGAGCGGTAGAAGTATATGAATGAAAAGGCATCACGACAAATGTGACCTTTGTTT TAGGCAGAAAGGTACCTGTGCATCCACCACAATAACTGTAACCATTATTCTAGGGTTACTGCATAGTTCT CCTCTGAGGTGAGAATCCAACATATTGGTCAAGACGGGAACTTTTACAGGTCTCATGTCCCCAGATGGCA TCTTTACAATATCTTTAAATCCTTTGATTTCGGTGGGTCTAATATATATATCCTGCCCAAGCTTGTTTTG TGGAATTATGAAATAGGTTTTCTTCTGATGCACCTCAATAACAGATTTTCCATTGTCAACTAGAGGAAAT GCGCCCTGTAAGACGTAGCAAACATAAATCAAGAGAGAAAGAAGACTGCGTCACCATGTGGCACATAGGA ACCAAAGGAGAAGTTCTCACTCTCTCTTTATGGTATTCATGGACGTTGCTAAGGTTGTTCCAACTAGAGT ACGCCTGGATAATTGTATTAGCATTTGAAACTGAGAAATTCACATTCAAGTCCGTTGTAGATGTCAGGCG TAACTCAGAAACCGCACCAAAGGATCTAGGGTTGAACTGGTACCTACAGCCCAATGGAGCGTAGCCATTA TATAGAATATGCTCGACATTAGTTGGAGTAAATAACAAACAAAATAAACAGAGCAAATCACCCGCAGCCA CAGGTGTTTAGACCTACACATTTCTGTAATAATGAGCTTTAAAGTAACACAAAATTAGAACAAAAAAAAC CTTAAGAATCCATCTGCAGGCTCGATGAGAGGCTCCCACGCTTCATACTTATCATTGTATGACCTTGCCG CTAAGGAGAAGTTGATGGTTGACTTTGTGTAGTTGGTTTTGCCAAGTAATCCAAAACATATATTACTCAA AGATACATTAACCAATGGAACCATCTGCAAAGTACATAGATACGCCATTATTTTCACGCAGATAAGTACG CCACATACGTTTATTTGTTTTTTCTTACCAGTCCCCCGTAGTCATCAAAAAGCGCAGCAGAAAATGTCCC AATTTCTGCACGAATGACCATGTTATCAATTCCTCCAGGCAAATCCTGGTCTGCTAGCTTTAAAGCAAAT CTCCTTGGTGGTTTTTTCAAACCACTACGGACGATAAAGGTCTTCAACTCATTGCCTATGCCCCATATAC TAAACGGTTCTACCCTCTGCCACACATCAGAGGTATCCCACAAACTATCTTCAGCAAAACGATCACCAGC TACCATATCGCTACGAGCGCATTTCAATTTGGTTAATTCGTATGGTTTTGCTGAACCTTTAGATGCAACA CAACCCAGGGAAACAAAACCCGGTGGAGCTTGAGGCATCCAGAAAGATATACTTTCAACTCCTCTGTGTT TCTTGACACGTCCAACAAGTTGGAAATCAACAGCGGCTTTAAGGATATCTTGCTCACCATCATCACGAAG AACCACACAAGAGTTTGGAGGTTCATACCTACAAATTAACCCCCGAAAGTAATTAACATGCACCTTGCCA CCAGAAAAGAATATACTAAAATGATATAGTACATCATTATGACTTACCCACTAACAGCAATGTCTCCGAA ATAAGCCATCCCCTCAGTAATGATTGGTCTCCATATTGAAACTTTCTTCTGCGAGCCTGAGCCCCTATTC CACCATATCAACTGAAAGGAAGCAACAGCTTCAAATCGCTGACCAGATCTAACAGAATTCAGTGGCTGTG ACTGTGGCTGTATAGGCTGAATATTATCAGTAGTACGAACATCCACGTAGCTGGATTCTTTTGGCAAGAC TCCAGTGGATCCAAATAATATATGACGTAGCTCGTATGGTCTTCCTGATAAGCTGAGAGAAGACGGATCC GCAGGTAAGAAACTGCCAACAGAATTATCCACCCGCCAGAATGCTAAACTTGATTGAGAACTGCATTGAA TACAAAAGCAAGCCTAAAATGTCAAATCATCAATGAAGGAAGATAAACCACACTGAGGTGACCAGCACAG ACGTACACTGAAGTACTAAAATGGAATCATTTATTAATATTAACCAAAATCTGACAAAAAAAAACAAATG AACAAACAAATTTCTGCATCTGCAAAACCGGATACTACCAACTAAATTCCAGTTCGTTTGAAACAAGCGC ATGAAACCAATATAAATCACATAGACACATGGCAAAACACATACGAAATGTCAGGAAAAACAGACAGTAA GCATGTTGGCACATCTCTACAGAAGGGAACATGCAGCATTGTATCCATGTATTCAGAAAGTGAGCAACAA CTAAAAGTGAGAGGTTCGTTGCAGCATACATATCTGTTGAGCTGATTGCTACACAATCTCTGAGAGAACA AGGGGATACGGAAGAAGCTAGAATGCAGAAGACAGAGGCCAGTGGAGGCGGTGTACATCCACTGGATACC ACACAGCTTAACGCCACATAACCCTTTGGTGCTTCAGGGAACCAAATGGAACACAAATTGTCTCTTTCAT CTTTGTCATCCGTTGAAGTATCACCTAACCCGTTGGAAGCTAAAGGTGACCAAATCAATCTGAAAGATAA AGGCCTCTTCACTCTCATCAAATTGGTGTTGACAACAAGAACCCCTTTAGTAGGTGGTTTGTCCCTGCCA TGTCAAAATAAATTAGTTGATTCACAAAGGCTCTTGCGCAACCTATTTAAAAGTATAACTTAGGATGGAT GACTAACAATGGTGTCAAATAGTCGCCAAGACTTGCAAAACCAGGAGGCGGATGGGGTCTCCAGAATGCA TATTTTTGATCTGTACAGGGATCTGCATGAAATGTAAGTAAGTACCACGTAACAAACCTTAAATGAACTG AAAAATTTCAGCAATAATTGGACATACTTCTGATGATCCCGACTTTATCAAACTCTGTGCAGACGACAGT CATTTTTCTGGATGTCATCCTTAGAAATGATAAAATGTCTTCTTCAACAGCTATAAACAATCTCAAGATG CTGAATGAGAAGTTCATAAATATGTTTGAAACTGAAAGCTCTATGTTAGTCGTCCCAGAAACACTTGAAT ACTTTACAGAGGTGTCGAACGGTTCCAGAATTTTCACTCCATTACTCTCCATGGTCAGACCCAATGTATG AGCACTCATTTCAATTTCATCATTCTTTATGATTACCCTGCACCAGAAAAAAAAACAGAAGGAAAGACGA TAAAACTATGAACAACAGATGTGCAAAAACTTCATCAAGCTTTAAGCAACGAATCATATACTTAAATTTC AGCTCTAACAGTAATATCACGGAGAAGCCATTGACCTGCCATAAGCATCCAGCTGAGCATGCAAAAGTTT GTTGGAGAGTAGTGGCGTTTTAACAACGTCTTTTGATGTGTTGTAGAATGTAAGTTCTGGGCCGATAGCC TGCAGCAGCGGAAACGAGCTTCGAACATTTAAAATGGAAGTTTTCTTGGCTTATCATGCCCATACAAAGA AGAATGTTAGCAACAATAAGAACCTGAAACTCAATGATCATTTCCGTGGACTTCTCCGTTGTGATGCTAG GAGATTGGGAAACCGGATCTTCCTTGCTCTCAGAGTCTTGTTTGGGGACTTTATGATATTCTTCCAACAC AACCCCTTCCTCTCTCGAAACAGAATAGCTGCTGTAGGCTCCCAAAGAGATACAGGAATCCAAAAATTGG CCATTCTTGATCATAATAGAAAGAAAAGTGAGAAACTATAAGGACGACAGAAATAATAAAGTTCAGATTT GACAAAGAAATAATGTAAGGACTTCTGTTGTACCTTGAAGATTACATTTCTGAAATGCAACTTTTTTCCA CTTCCCACATATATAACAGGCTCTGTACTGGGAGAAGAAAGGATGCCTCCATGTCTATCTTTCAGGTACA ACGTTCCACCATTACCATCATACACAAAATCATCAAATTTCTCATCTTCAACAATTAAAGGACCCAGAGG AGAAAGAAACGCTTCAGCAGTTTGTTGCTTGTAGATAGACTGATCCATGATGACTGCGTCGACCATATTA AGGTTTTTATCCTCTTCACTTGATAGGACACTTACAATAGTAGGGACAAAAAACTCTACTTCGGCCAGTA GAAAATCCAAAGCTACAAGCAGCTGTGGCCTTTGGATACAGACGGAAACAAAAGTTGACGACTGACCGAA TTGCGCATCAAGAGTGAGCATCGAAGGAAGCGGCCTAACATCACTCCCGTTGGTTACACGGGAGTGAGTT AATCTCTGATCTCCATCAGTCAGAGAATGTGAGTCACCAAAATCTAAGTCTGCAGGTCTTCCTACAGCAA GTCTAAACTCTTTTTCAGTTCCTTCACGGTTGTCAATAACACTAAATCCCTTCAACGTTGCTGTAAGGAA ACCCTCATCGTGTGTATTGGATTTGTAGAGAAGCCAGCCACCAGAGATCTGTAAACCAAACACGATAGAT TTAAGATGTTAACTCAATGTGCCATGAGATTGTTAACATAAATTTAAGATGTTAACTCTGCTGTAAAATT CCCTTTGAGATTGTAACATAAAATCTCTACGAAGCAACAAACATGAGAAGAAAAAGTGGGAACAAAGAGG GGGAAGAGTAGAGTCCTATAAGAACGATAAAATTGCTGATCCACAGAACTAGAAAGGAATTTAAACAGAA GCCTGATTTGATAATGTCAAAGAGAAATTACAATAAAGCAGAAATCAAATTACTGAAGTCTTTCTGGAGA ACCAATTCCGGACTGAGTCAAGGCCTATTCAAGATTAAACTTCACAAATGCATAGGCCCAAATTCTTAGT CAGAAGTTTGACATCAAACAATATTTGGTCAATCACTTTTATCCCCCAAATCTATCAGCTATGACAGGTC CAAGGGACATAAGAATACTATGTACTCCTAGATAAATATGACAATTGAAATGAATGGAACATGGAAAGCG GACCTGTACAGCAGCCAACGGCGCATCTCTTGCTGTCCCAGCATACAAACACAACTCCACCAGATTGATG ACAACAGAAACCTTCATTGATATCCAAGCATCACTTTTTTCAGTTTGAGCAGCATTAGGATCCTCGGAAG TAAGAGTTTCAGGTAAGTTTCTTGACGATGCCACAATATCACCACTCAATGGTGGCACGGTATGCGGAAT CTCAGAAATATTAGACTGTGCACACTCTGTCAAGATCTGGTATTCCCTATTCGAGAGGGCTGCTCTTAGT TCGTCTATCTGATAAAGCAGAAATTTAAAGAACGTATGAGTAAGAAAGTATTATGCTACAGACTGGATAT AAGACATTATCCTTTACCTCTACAGAGACTTCAATGCTTGGTATCTGATGCAACAAGTCTCGCAGAGACC TGTTAATGGTTACAGAAACCCCATTCACATCTTGAATTATGCTTTCACCTATTTCAGCTCCAGAACCAAC ATTAAGGTTGATATCCATGACCTAAGTTAAGGTTGTTTTCGTCAAAAGGTGTAGAAAAAACTAATTGTAC GATAAGGTAGTATGAATTTAAAGTGATATCAACCAGAATGAAATATGCTCAACCCAACAGCCAAACAACG AGAGTTCTCACCATCACTTTCATAGTTTCCATGTGAACTGCATTCAGCTCGTTTTTATCTCCAGCAAACC ACTGAAAGGTATTGTTCACAGTTATATGCACAACATCAAGCTTCAGGTAACTGCAAATAAAAGAAAACCC GAAAAGTAGAGAAAGGTAAATCAACTACTCTGATAAGTCCAGAGAATTCATGGGACCAGTAACTAATATA ACAAAAATGTGTCATGGAGAAAAAAAAAGGGTGGGGAGGGAGAAATCAAAATCCAAGCATGAACTTACTC AGGGCTCTCAGTATGTCGAGGCATAACAATTATAGGCTTCTTAAGAGATAGATCCAACTTAAGAGCAGGA GATCCTTCAATTTCGCTAGTCGTAAACCACTTCTCGGAGTCCGTAATTTGATCCTTCATCTTGACAACCC CTTTTGAATCGCTTGGCACAAGCCCCATAAAGTATTCAGCAACCTACATTGCAGAGACTGATTGTAGGAA GCAAGACAAATTTACTCGCATCTACGTAGAGAGAATAATGAACTACCTCTTGAATAAAGCGATTCAGATA AACAATGCGCACTTCAGAAAGTTGTCCAGAGAGGCAGTAGTCAAAACCTTCATGGTCTTCATCAATGACA CTGAATGATGTAAATGCCAACTAGGAACGGAATCAAAGAAATGAAATTAACACGGAAAAAAACTCATGCA TCTCATCTGCACATCAATTCATATTCAACGAAAAAAAGAAACAAACAACGAATACCTCAACAAAAGAAGT TCCTCCAGGGTCTCGCATATCACAGATCCAAAAGTACATATGGTTGTCTGGGAGGCTGTCATCACTGATT CGTAAATTTCCAAGACTTGCTGTAATACTGAACGAGTTCGGGAAGACCTTCAAACAAATGGGAATCAGTA CGGAATACCTTGGATATTGATAGTTCTGAAGCAAAGAGAATCATAAATAAAGTTTGGAATGCAATTCAAA AAGTATAATCTAACCTTAATATCTGTTAGCAAATTGTCTTGTGACAATGTCGCAAACTTAGTTCCATTCT CATTCATTAGGAATATCTGCGCCCGAGCCATGTTCAATGCCAAGTTGAAAATGATTCTAGATTTCCCCTT CCCTAACAAACCCTTAACAGCTGCATCCCTGGAATCTTCAAATCCATTTCTTTTCGGTGAACTTTGCTCT CCAGCGACAGGAGAGCTGTCCTCAAAAGATTCACAGCTTGGATCTTCAACATTGATAGCATTTACAAACT CCAAAATAGCAAGAATTGTTGGCCTCCGGCAGTAAAATGATAATGTGGCTAGGCTTACGGTCACCTACAA TGTGTGAAACATCAGCCACAAAAGATAGTAAGCCTTGACTTTAAAACAACGGAAAAAACTAACATCTCCG GACTGAAAGATGTATAAACAGAAATCTCTTGACCTGATTATCAATATTATTATATTGAGGTGACGTCTGA TGGTATATGACTATTTGAGCCTTAACAAAACTATCCAGAGACTCAATTCTCTCACTGCTTGGCATAGTGA TATTCCTGTTGTCGACAGGGAGCAATCCATCCATTCGACTAAAACTGGGGGTCCTAAGAGATGTATAGTC AACGGAGTCAACCAAGATCTCTGGTGCTTCATAAAATTTTTCCTCCCCTTCGCTAGAAGAAAGATCATTT CCTTCAGGGTTTTTAATCTCAGCATCTTTAAAGGATGGAAGCACCACAGAAGACTGAATAAAAGATCTTG CTAAATAACAAGACTCATTTGAACCAGAACGGCTCACCAAATCTTCTATTTCCAAAGATTTTAGAACAGT CCCAATAAACATATCACTCCCTCTCATCGAGACTTCAACCTGGTTCGACAAAGACAAACAGACATTCATA AAAAGGAATAAGAAATGACAAAGATAATTAAGAAGCAGATCATATACCTTCCCACCTATGGCCCTAAACT CAAACAGTTTACTCTCTCTTGCAAGAAGCACCGCCATGAAGGAAGCATCGTGCTATATTAAAATATACTC AGTCAAAGCATGTCCCATAATAACAACAAGCCGTGGAATTTCACACGCAGAAATAATTTATATTTACCTG TTGACCATAGCTGAAACATATTTTGAGTTCATCAAGCACACCGGTTACATATAAACTCTCCAACTTAGAC AAATCCCAAATATCTTCTTTATGTTCTGTTTCTGATTCCTCACTGTCAGATGACGTATCCGAAAGACCGG CTATGGGAGCAGAACCCTGTACATTAAAGTGAAATTTAAACTTAAATCATCTATATAAACAGGTAGATCA TCAATGGAACTGTCTCATGGTAAGACGTCCTATTGATAACTGGAAGTAAGGTTCAAAATTAAATTTACCG AGGCCCGGTAGACAGCGCTCTGCAAACGGCTGTGCCAAGTCTTTCTAGACTCTTCAGAATCAAACATTAA TATGAGTGCATTCACATCCTCCATAACCTAGAGACCATAAAATTAAAATATTCAGCGCCAAAATTCATTG AAGTTTACAATCAAGATCCTCGAATCCTCATTGATGAACACACAATAAAAACATAAAAGTCATGACCAAA CTCCGCCTGCATTTATTAATTCAACTACATGAGATGTAAACCTTCTCATTGATTCGAGAAGCATTGCGAA TGGACAAGACGTGTTCTACTCCTCCCGCGAGTTCTACAGGGACTTTGTATATATGCTTCCCACGTAAGCT ACAAAAGATACAAATCCTTAGAAATATGACAAATACCAACTAGAACGAACAGATAGAGTTAGGAAAATAT CAAAACAGCTAGTAACTTTAACTGCTGGGTGAAACAGCATAAAGTTTAGGTAATGAATTCTTACACTAGA TTTATGAACCTAGATAACTGGACTTTTAGTGGGTCTTTAGTTAGACAAGGAAACTTAATAAGCCCCTTAA ATAGCACAACCGAGAGAAATTCATTTCTTCCGTGTCTTTTTCACCTTGACTTCACTAGTTATATAATACA ATGCATAGCATTGGTTTAATTTACAAATGGCTACGATAACATAAACATTGAGCAAAAAAGGCAGTCTTGC CATAGTCTTTCCACATGTCAATCCTCGTATCTTATTCATTGTAAACACACGCAAACATTACATATAAGAG TACTGCACTTCATCGAGTTTGTACAGACCATCCATTTTATCTAAAGTCTAATCTATAAAGCCTCATCCAT TTTATCTAAAGTCTAATCTATAAAGCCTATCACTACTATAACGAAATTGCAAGAGTTCGAATCATACCTG GTATACTGCTTATAAGATTTTGAGTTAGGACTTTCCAGCACGTATATAAAAGGACCAACTAAACATAAGT ACCGCCGCTGCCATGTAGCTTCTCTGCCCTATTCATGGATTTGACAATCGAATAAATAAATAGTGTCCAA GAAGATAAGAGAGCTTGCAACCACAAAAGTGATTATGGTACGTAGAACGGTACTGACCTTCCAGCTAAGT AAAGACAACCAACCCTCAAAATCAGCTTCTTCCCATGGACGAAGAATGTGAGAGCCCTCATCATCCTTAG TTTGAAAGATCTGTGCAACTTGCATCAACCTATGATATCGAGCTGGTGAGAAGTGAAAACCAAGTGACGG TAGCCGCACGGCAAGTCTGGTTGACGGGTACGATGGGTTTGGCCTACGAATCTACAAACCAAAACAGGAA ACAATAGTGCTAAATATCTACAGTTTGAAGCATAACTCTTTTACCAAAAATGTCTATGCCAGATGTCCAG AATTTTACCTGTTGTAGTTTTAAGAGTACCCCACACTTGTCAATAACTGGCAAGAAAGTAACACTGCTTT CCTTACCAGAAGATTTTTTCGAGGATAACTGTTTCCAGGAGTAGTCACCATCAACAAGTAATGCGGACAC ATCACTCAAAACTAAATCAAACTGTAGATACATATCCATTTCCTCTGACAGTTCACGCTTATAGTCGTCC TGCAAAATTTGCATGCATAGAATTTAGGGAATGTGCATTTAGAAAATTCAAATCATATTGTTAAAAAAGT TGACAGCTGACACTTTTCTATTTACCTGGGAACGGATGACCAGGTTACCCAAGTCCAGAAGAAGCTTTGT AGAACGATGGTTATCAGGACGAAATTCGGTTGGAATTGTGATTTTGGGTGCTGCAATGTCTAAGTCGAGC AGAAACCTGGTTGTTTTGTAAAACGTCATTTACTAAAACAAGCATGGGCATAAATTTGACCACGAGCTCA TGAGAGTACGAACAGACCTTGCATGATCTTTCAATGCTCTATTCATTCCTTGTTGAGCAGTGCGTCTAAC TTCATCAATAGTTGACTGAGACGGTAAGCAAGTGAATTATAATGATTAAAGTGGCTCCCACGGGCAGTTG AATATAAGTAAGGAACAGAAATCTAATTCGAACAATTTTTGAATACACTGCAAGGATCAAGCTCTACAAA TTGGAAAGTTCGAGCAGAAATACTGACAAAAAACAGAAATGCATACTTACTAGATCCCATATTACCATTC CTTAGATTAGATATACAGTTAATAATGAGATTACAATTACCAGGCTATATAAAACCAATATGCACTCATT TTTGTCAACTTTTCACACCACGGCAAATATTAGACACACCTGTACAGCAGCTGCAGTCTCTAAAGCTATT GTCTGGCTCACAGCAGTACTGCTTTCGAAGAAGTTGACAATTCCATCAATAGAGTCCTTCAGATACTGCA GGCGGCACCGCAATAAGCCACATAATTTTTAGAAAGAACTGCTTATACAAAATTTTCTTAGAGAGAGGGG CACGCACAGTCATATAACACGGAGAAGCTTTTGCAACAAGACTCCAGTCAACTTTAGCATCAAAAGGCTT ATAACAGAAGGAAGCAAGTACAGAGTGAGAGGCAGGGGCACTCTGCAAGAGAAGAGACATTTTTAAGGGA TTTTAAGAAATCACTGACAATGTTCTGTAGCCTGAAGAAAACAAATTCCACCTAACAAACCTCAGCAAGC GGGCCATTTGGCGATGACAAGCGATATCTTCCCAATTTAATGTCGGCAATCTTTGTCTCGGGGAAAAGCT TAATGGAGCAATTAAGATCTTCACATGATAACTCAGCAAGGCATTCCTTATCCCCATCATAAAGTTTTGA AGCATTACGCCTCATGTGTACCTCCAAGAATGTATGGAGAGCATCAGGTTTTGCATTGTTGATAATTGAC TGCTCATCACCTTCTTTGTACCCTATGACTTTATTTAACCGTTCCCAATCTTCATCGGTGAATTGAACAG ATTCTCCTTCACCTTCAGACACTTGACTCTTCCTGAAGGCATATATACAAAATACTTTAGAAAAAAATTG GGAGAAGGAGTTGGGAATTTGGAAGCAACCAGGGGAGCATTCACCCTCCAAACGGCCACCATGAACTTTT AGCCTGTTGTGCCTTCGAGTAATTTTCTGCTTGCACCGATCTCTCAACAAACTTGTGGGCCAACATCCTT CATAATAAAATCAATGATAATATTCACAATTAGAAATGGTTTGTAAATTACCCTTACTTTCGACATCCTA CTCATGTATTGACAATGAAAAGAAAACAGAGAAGCATCATAGGTACAAATAGAGAAAGAAATAACGAATT AGTCCTAATGAAAATTTATAGAACTACACAAGACCAAACGTTTGAGAAAGCTAATTGATCTGCTAAGATG CAACTAAACAATAATATTTTACCTCCATTGCAAAATGACTTCGGTATCAAGTCCCCGATCAAGGGCCTTG ATTTCTTCATCATCATCAACCACTGTCTTACTGACATCAGATTTCAGCAACGAAGCATAACGCGTAATGT ATCTCTTGCGTAAACTAGTGTACTTTAAAACGTGCTCCCATGACATTCTCCCGCTGTCATAAAGGTAACA ATCTCAGAAAACGTAAACAGAAGAGAAGTGAAGTTAGGAACCGCAAGGAAACGGTTTCCAAAACGAATGC AAATTATAGAGAAATACGGCAGTAGCAAGACGACAGAAATGAATATCTCTAATTCGATACCTTGCTATCT TAATTTGTTCTGAAACAACTCTGAAAGCATAATTCCACCAAGACCGTGCGTCACTTTTAACTGAAACAGA TGGACGGTAATGTGCATATTTCAAACGCTGATTAAACGCAGAAAAATTATCAGCAAGTTTCATGACATCC CTGTATCCTCCCTGAGACAAAAAAAACACACACACACACAATCTAGACCTCCGCAGACATCCAAATAAAA AAAGAAAGAGCAGGAGCCTCAAATTTTGGCTTAACCTTTGATAAACAAAGTGTCACATCGTCCAAGTTAA CATATGCCTTCTGCAAAGGTTGATCAGTATTGGAAGAACCATTTGCTTGGGACTTAATGTACTTTGCATT CCCTGAGACAGGTTGCAGAATATAGAAATGTTTTCTCGTTAGGTCTTCAGCTGGCTTACCATCTTTGGTT CCGTATCTAAAAATCTAGAAATATGCATGCACCAAAAAATTAGATTTTGGGGTAAGAGACAAATTATGTT CCACTATATACATAACTTCGCTTATGAATACCTGATCCCACTCAGAAGGAAGTAAATCCTCCCATGGTTT GTCAATATACCACGGAGACATGTCAGAATCAAGATAGAATGCAAGCCGATCAAGTTCAACAGACTGCACA AAGGCAAACATAATTATAACAGGAATGTAAAGTGCCTTTGTTTTCTTTCTTGGCAGGGGTGATCCTTTCA CCATGCAATTAATCCATATATGAATTCCACATAAAGTTTTTCTCTATATCACTAACCCTTCCGGAGAGCA CCCTAAGTCAATCTTCCTCGGGTGCTTCTTACTATACCCACATAACTATTTGAACTAGATTATTAAAAAC AAACTACCTAGCTACTTACTACAAGCAAGCATAAGCGCAAGAGATCTGAACACAACACCTTCCCAAAAGT ATAAAACCGAGGGACAGAGACCTTTATAAAATGTTTTCCATAAGACCAGAAAAGCTTGTGCCAGACAGAT ATTAATGAGCAAATTTATACCTTTTGGATGGAAGCCAGAGTGCCGCCAGTAATAAAGGTCTCCTTCCCAT TCTCATCAACTGTTACAGCTAAGAGTTTTTCTAGTGTAAAACCAGCTGAAAATGGGTGGCCGGGATTGCT GCACTTATAATGTAAGCTTTAATCACAATGGGAAGACAATCAAAAACAAGAAGAAAAAAATTGTCATATT CTATTTACCTCTCTAGATCCTCGTATCTTATGTGAATATTTGATATTGACAGCTTCAAGTTTCCCATGAC TGTGTCGACCAATGATCCTACCCATGATTTGTTCTTATAAGAGAACAAGAAAAATATGGTAGTTAGTTTA ATACAATATTTCTGAACACACACTATCTACTTTGATGAGTAGCACTAGCCACACCATTTCCGTATGTAGT CGACGAGCTCTTTCTACTAGTTTTGTTTCCATTTCCTGTATATTGCAAACATAAAAGTGATTCAATGACT CAAATCAGATAATGAAAACAATCATAACATGAGCGACCTATCTCACCAGTATTAGCTTTCTTTTTTTCTC TTGGATAGAATCCTCACTACATCCTTCAACATCAGTTGCGGGTTCGGCTAATAAAAAAATTCGATCAAGA TAAACCACTACAGGTTCCTGGCCAAGCCTGCTCCATGGTACCTAAAATGATTTGAAACGTATCAGTAAAT GGGTGTAACCGAGTGTAGAAAAATCTGTAAACAGGAAGGTAAAAGACCCCTGCCCAGAAAAAAAATCGAT ATCACCCGGAAAAAAATGTATGATATTGCGTCACTTACAGAGACTACAACAGCAGTTGAAATACAATTTG TGAGCAAATGTGTAGAAAAACGGGAAGAAAATGAACGCACTCAAGCAGACATACTTTAGCTTTAGATACA ACAGACAGAAGAAAAAAACACAACACACCTTGAGTTTGACTGATCCAAGAAATCCAGCTTTAACCTTGAC AGGTAATTTCAAAGCGTTAAGTGCTTCTGGTTTTAGTTGCATATTCTTCAGCTCCACATCCCCTGCGAAA TTAAGTAGAACCAAGAGCTAATTAACAAATGAGAAAACTAAAAGTCCTTCCTTTTATTCAGTCGATCTGT TCTTAGTAACAAATGGGAAAACCAACTAAGCATTTACGAAGTGAACAATCAATGTAAACGATGAAGAAAG CAAGCAAGCCGATATTCTCCATCATCTTTGAAGAGTTCCAACCAACTAAACCCCAAAAAATCACAAAATC TGAACTTTACTCCCACCCTTCTTCCAAAATCAAAGAAGACTTTGCCGTTTAGCTATACGAATATTACAGC TCTTTATCCAACTACAACACAACACAAAACCTAAATTCGCTACTGAATATCACAGAAGAAACCAATCTGA CCTTGCCAGACACTGATCTTAAGGGCTTCCTTACTCAATCCCCTGACGTAGTTCCCCAAGTACCGCTGTA ACAAGTAGGCTACTTGATCTTCCAACATCTTCGTATCCTACAAATCAAAAACTGGGAAAAACAAAATCAA GAAATCTATCGGAGACGATGCGTGGATAGAGAAGAAAACGCGTGGAGTGGGTTCGATTTGGATCGGAGTA GAGAGCGGATGGAAAAGAGAAGGAGGCACATGGGGAGGAAGATGATCGTTTCCTCAAGAACACGCAAGTA GGAGGAGTTGGAATTGTGAATTAGTCGTCATGACTTGGAGAGGAGTTACGGCTCCGTTAAAAAGGAATAT TAAAAATATCCTCTCCGATTCTTGGCGGTGCTGCTTATCAATTGTTGCCTAAACAAGAAAATTAAAACAT TTTTAATTCCATATATGTACAAAATCTATTTGGGAAATATCTAGGATATCACTAAAATTTTTTTATCACA AATATAGACTTTAATGATCAAAATGTTTCATTCAAGAAATTATATCCTTATACCCTAAGGATTAACTAAT CCAAATTTTAAGATTTAAAATCAAAGAGTGGGATTTGGGTTTGAGATTTAAAAATTTTATAAAACAGAAA ATAAATATTAAAATTTTGAAAATAAAATTTTTTAAAATAGTTTCAAAAATTATTTTCGAATTACAAAAAA AAAATTTGCCAAAAAAAATTAAAAACAAAATTCCAAAAGACAAATTCCAAAAAAAAAAATTATAAAAAGT TCGAATTTGAAAACCTATAATCTAAAACAATAAAAAAATTTATTTTTTATTTATTTTATTTTTATATATC TAGGGTATTAGTATCCTTTTACCTATTAAATGAAACATTTTGGTCATTTTCTTCCTTGTGATCTATTTTT GTGACCAAAACTTGAAAATAGTCTATTTATGAGAATTGCCCAATATATTTTGCCATCATACATTTAAATT TACAAAAAAATATTCTGAATATTTTTTAAATATTATGAACATTAAAATTAAATTAAGAGAAATTCCATTG GATAGCCATTTTTAGTTTATTTTCACAAAATAGTCTATCAATGAGGAAAATGACCAAAATAAATTTTATT AAACGGTAAAATATGAATTTATACCCCTTGAGTTAACTAAACTTAGGATTAAGAGTTAAGGGGTGGATTT TGGGAATGCGTTTCAAATTTAAAAAAATTTAAAATTAAAATTTTCAAAACAAAAATGGGTTATTATGGTC ATTTTATTTATTTAAGGCTATTTGTGATAAAAACTTAAAAAGCCTATTTGAGAGAATTGGCCTTAAATTA ATATAAACTAGGTGTTTTATCTGTACATGCAGATATAATTCTTTTATAGATAATTATTAATAAGTGTATT ATTAGTTTATAGATCAAAAAATAAAATAAAGGGGTAAACATTATATTTATATTTTTTATGAATCTTTAAA TTTCTTAATTTAAATTTTTATTGATTTAAAACATTATTTTAGATAACAACATTAATATTTTATTTTAAAA TATGCTGTTATTTTTAACCAATTTTTATTATATTAATTTATATATAATGATCTAATTAAATAAACAAATA TATAATTGTTAATACAAAGTGATGTTGTTAAACTAAATTTTTGAAATTACCAAAACCTACAAAATTTCAA AATAAATCAAAAGCACAAAAATGTTAAACCGAACCCAATTTTACATATTATATTAATCAAAGTAAATAAA ACTATGGATATATGTATAGTTATATTGTAAAGTATCTTCCATAATAACTCAAGGGAAATTACACCCCATA TACTAGACTTTTACCATAATTAACCAAATATCATAAATCCCACAATATTATACCTTTCTCTATAGACACA AACTAGTCACATCATAGGTATTTTCAATTTTTTAGGGTTTTAAACCAATTCACCCATAACTAAATAAACA TTCAAACAGATGAATCATGTTGTCAAACAAAATATTAATATTGTATAAGACAAAAACATTTCCAATCTAT TTTTATTTTCATTTCTAAATATTATAGTAGAGAAAAATAAGATATAGTCAATCTATATTTTTTACTTTAA AGTATATATTGCTATTTCCCTATAAATTATTATTCCTCTTATTATAAAATTATAATTTGTTATTTTCAAA TGGTCTTTTAACTTTAAAACTTTGATAATTATAAATAAGACTATCATTTTAGAAAATACAGTTTTGATAA TATAAAAATCACATTTTTCTTTACTTTATAGTCTCTTAAAGAAATTTTAATCTAAAAAGTTATAATTCTC TGAAACTCTTGAAAAAAAATAAAAGTAAACAGAGTTAATTTTAAATTTTTATAAATATAAGATACTTGTT GTAATATAAAATTAATATTTTGAAAATATTCTCTTTTGGAAGCAGATATTTTGAAACTATTTAAAAAGGA TAATTACATTCCCAATTAAAAAAATATTTAGAACAACAAAAACAAATAAATATTAATTTTCAACTTAAAT AACAAATAAATGTTATTCTTGCAACTGAATAATAAGAATAAAAATAAAAATACCAAAAAATCACGTTAAC AAACAAATATAAATCAAATTTTTGTTATTGGTTACATACCTATTTTAGTGCTAAAATAAATTTCATATTT AAAAAAATATGACATGACATATTACGTCTACAAACAAATATAAATATATTTTTCTTCATAAAACTATTTT TTATTATTTTAATATAATGAAAAATCAAATTATGTGTATATATACTACCTAATTATAAAAATTAATAAAT AAGAAAGAAAGATGTATATAAACACAAAATAAATACATGGAATTATCTTTTCTTTTTCCAAACATGTTCT CCATTTATTTTCTGAGATAATTTTTATAATATTAATTTGTAATCAGTTAAATAATGAATTATATAGTTAT GTATTAAAACTTTAATCAGTCTAATTAAAATGTATTATTAAAACTAATGGCTCAGATTAAAATCAAGGAG TACATGACAAATAAACAAAAAGCAAATTCACTTCTCAAATAATAGTATAGATTATAAAAATAATATTTTG ATGAATTTTCAATCAATAATTTTATGTGTGTCACAAAAATTAAAAATACATATCCGATATTTTTATTCAT ATGATGTTAAAAGTTATAAAACTTTTTCATTAATCCATGTGTGGAGAGTAAAGAGTTACTTCACAGTTTT CCAGTATATTAAGCTAAGTAAAATGATCAAACTGTAAGTTTTCATTCTTCGAAATTGTATCTTCCATTAT GATTATATAATACATTTATATAAAAATTCTTTTAATCAACAAAATAAATGTTTTACACCCAAAAAAAAAA ATGTTAGACGGAAAAAATATATGATTCGAATTTCAAATTACTTTATATAGACTAACTTTTAATAACTATC AAATTTCTAAGCTAAAATTATTTTCAAATTATTTTTAACTTTATCATGTTATTTTATTATATCTGAACCC AAACAAAATAAAATATGCTTATGGTTCAGACCAAGACTGAAAATCATAGTCCATAAGTCAATGCCTTATA TTAACGTTGAAGAGGAAACGCACACATTTGCACGTGTATAACTGCACGCTGTAACGCTTCAGATCCAATT GTTGTGGGCCTGTGTACAGTGTGGTTTCATTAACTTGTTCTTGGGTACATGCCACATGGTACATTCTGTT TTTTTTTTTTTTTTTTTTTTTTTTATAATAAGTACTTATATTATAAAATCTGCCCGAAGAATCGGGAATC AGATACGGTTACAAGCTTGTTTTGAACAAAATGTCAAAATCTAACTATTACAAGCCTAGCTTCGCCCACC CACTAAACCCGGCACGTTCCGCTAAGTTGTTTTTCGAAGTCATTCGATATCGGTAGCCGTTCTTGATGTT AGGAGTTTTCAAGGCTCCTAAGACAAATGTTGTAGTATAGAAGATTGTCGAACCAGTTCTGAGGGATATC AAAGCACTGAGAATGCAAGTACTCACTTAATCTAAGTGCAACCAATGATTTAGATGAGTTTTAAGCTATG ACTAAAACTAAAAAGCAATAACAGAATGATACTTTCTTGACTAAGGGAAAAGAGAATTCATGGGCATAGG GATTAGACCTTGGGTGATCAAGTATCGAACTAAGGATGGCAAATGATCAATCAAACTATCAACCTTAAGC CTAGACACAATTCTAAGCAAGCTCTAGGTCTAGATGAATGCTCATTTGCTAACACATCTCAAACATCAAA TGTCTTTGGTTGAATAATATGAAAGCAATCATTACTAACAAGTCTATTAGCTATCTTAGCACCTTTAACA ACAAATGTCTTTGGCAAAGTATACTAAAAGCCTAGGAGAGTTGTCTCGAGCATTTCATCGAACACCTTTC GGGTGAAAAATGCCTAAGGATCAACAACTGAGTGGCCAACTCAGAAGATGCATTATGATTACTCTACTAG CAAGGAAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTCCCTTAAAAAAAACCTCCCTAGCTC CTTAACTAAATCACCCCTTAATCTCCCTAACCCATGAATTCAAAAGGTGATTACTCACTAATCTCCATGA TTCCTCTTAAACCCATATTGGATTTCAGATTAATCATGTAGAGAAATAGATAAGAAATCAACAATAACAC AAGAACATAACAATCAAAATCCAAGAGATGAACTTCTCAAGAGAGTTCTTGTGTATTTCTCAATAGATCC AAAAGATCCAAGATCATCTGCCTCTGGTGGCTACAAAAGATGTTTAAAACATAGGTTTTTCCAAGTGCAA AACGTCCAAAATAAATTGCAAAAAGGTCCTTAAGAAATCATGATTTTCGGCAGCAAAATAACGCGGAGCG ACTTGCAGGTGTCGCTCCGGGAAGTCGCTCCAGGGCCGATTTTTGGTGTCTCCGGGCGAGAGGTCGCGAG CGACTTTGGTGTGTCGCTCCAACGGGTCGCTCTGGATCGGGAGCGACCTTGGTAGGTCGCTCCAGGCTTC GCTTCGTGTCGTCTCTCCATAAAGACGCGAGCGACCTCGGGGTGTCGCTTTGGGAGGTCGCTCCGAGAGG GGTGTGAGATGCGAGCGACTTCGTGGTGTCGCTCCGGGAGGTCGCTCCGGGCTCGTTCTCGCGTCTCCGA GTGATGAAACCGCGAGCGACTTCTCCCTGTCGCTCTGGTAAGGTCGCTCCAATAGGGAAGTCAGAGCGAC TTGGTGGTGTCGCTCCGGACTGGTCACTCCATGCCTTGCTCGCCCAATGACCACTCTAAACACTCCTTTT TTAGCTCCAAATGCATCCAAATGTCTCCAGAAACTCCATGTGGTACTCAAATACCTGATAGAGACATATG TATGCAAAATGCAACCTAAACATGTCTAAATCCTAATCTATATGATGAAAATGTTTATGAATGAATGGAT AAAACAATGTAAATATGCAAGATATCAGTTCTCAACCATCAACATAATTCTCGGGAATGTGAGGTTCTCC TTGTTTCCTTGGATGCCGGGAGTTCCCTTAACGTTTCCGGAGTAGCTAGTTTCCGATGATCTCCACAAAG CTCATAACTTTCTCTGTCAATGAAGCTCAAGACAGCCAAAGGGGAGAGTTCAAGTACATACCAATGCCTT GCTAATGCCACCAAAGCCGGGATGAATGAAGCGCCACACGACGCCTGAACCGATTCCCAAAACGAGTAAG CACTCGCTTCAGCCATCAACGAAACCTGCAGAAAAGTGGGTTGTCTCCACCGCCACATCCTGTAAAGCAG TCCCTAAAACCTGCAAGAAAGTCAGCTACACCACCATAGAACACTACGGCGCCGGGATGTGAGCATTGAC GAGATGCTGACTCGGAGACGGCAAATGACTCCCGAGCACCGCCTACGCATCCATGGCCTTTGAGAACCAA AGGACCAATTCCTTGACTGCTAACACTTCATCCCTTGAGCCAAAGGAATGATACAACAATTAAGTCCAAG AGACTTAAACTCCTCAAGAGAAGCCGTCGCTAAACTCCCGGAGAAAAAACTAAACAGGACACCGGGAATG AGAGTTCCGAAAGAGTTGTGGTGCGTCTTGAAACCTCCTTATGGCCATAGACGACCCATCAAAACGTAAC CAGAAACACACACACGAGGAATCAAGCAGGACACTTTCACCACGATTACATCCGCTGTCAACCTAGCCTC CAACACCAATACAGTACCGGAGCACTCTTGATAACGGCGAATGGGTACCAGAATCTCTTCGACCCGAAGA AACCCTAAGCAACCACCACCATTACCGAACAAGCACGGGACACAGGATCTACAGCAGCGAACCACCACGA GCCCAGCCGTGACAAGACCCAGCGCTGTCACTCCACGACGACAAACACCGGAGAGATCCGAAGAGAGAAA AATGAATCACTCCAAAACCCAAAAAAACCGACTCTAAACCGCTCAGCCTCGCTGTACTCTCGCCGCAGGT CCGGAGAAGGAACCACCTCGACCAGAATCAGCTCCTCGCGACTGAAGCTTCCGCCAGTCTCTGCGAGCTC CATCCTAGAAACGCGAGCATATCGAGCAAAGGATGACAGATGCGATCGAGAGCAAAGGTGAAAACAAGGA AAGGGGAGAAGAGACCCCTCCGGCCCCGGCACTCGCGCGGACGCGCCGGCCGTACGCCGGAGGGTGAGAT GCACGCGTCTGTGTTGTTGTTTGTCGAGAGAGAGTTTGTCGGTAGAGGAGAGAGAGTTCCAACTAATTCT GATATCAGATCACATTCTGTTTTTTTTTGTCATAAGGAGTTTTAATTTCACTAGTAATTTGGATTAGTTT TGCATTTGTTCAAATTGGAATATACCTTTTTGTTTAAAATCAAGTTATGAATCATATTTGACAATTTCCT TAAAAAAGTTAGGTACAAAGGAATGTTTATGTTTCAATAAGAGATGTGAAACTTGCATTCTTTATTTATC CCAACATAAATCACTTAACTTTTGTCACATTTTCTAACGAGCATTGTAGTTTAAACTCTTTTGTGTTTCA AAAAACAAAACAAAAAAACAAAAACTCTTTGTACTATCTTAGTTTTAGTATACACTAACTAAGTGGTTCT TACATGTTGGATAAATATACTTGTTGAAGTACAAGAGTGTCTTTCTAACTCCATGATATGAAACTACAAA TACTCCACATATGACAGATGTGTGTGCAATGTTTTGCTCTTTAGGAAGAGAGTTTTCAAAAGTATGATCC CACTTAGCTGATTTTAGACTTAGCTCAAAGACTATTAACGTTCTTGGTTGTTTTCCTTAGTTTTTTTTTT AGGTTTAGAGTTTGCTATGGCTGATTACAAATTACTTTGCAAGCTCACTTCCTATTTTCATTCTTTTTAT TAGTCTGGTTTGCAGTAGATTTTTCCGTTTGATTTATCTTCAAAATCTTGTTTTTATACACTGCAAATCT TACATATGCATCGTTCTCTTCATCTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGATCT TTTTTTCAAATCATATATAATCTGATATTCGTTCCACTATAACATGAAGGATATTAATGACGTATGCAAC CTCTCTTGCACCAATATCAGCTTCACATGTCATAACTTCGGTATATCTTCGAGTCGGAACCACTATGCCA TCATTTTGTCTAAGTTGGTGATTTAACAGTGTTACTAGATCTTGACACGCGCAACCATGCGCGTTTTATT GTAAGTTTTATATGCATATATATATTTACTTTAGATAATTAGTGGTATACATTTTCAATTTTAATCATAT ACTTAAATGTTTTTATAACTATTTCAAATACAATAATTTATAGTTTACATGTTGTAAATAATTGATTGTT TAAAATCTTCACATGTATTTGTTGTTTTTATTATATATTTACCGTATTGTATTTGCATTTAATTATTAAA CAAAATAATATGTGCATGAAAAAAATCATCTTTGAAAATTATTTTGTATTTAATTTATGTTTTATTTTTA CCCCCCCCCCCCTCGAAATGGATTTCTTTTTTTGCAATATTTCTTACGTTTATTCATTTTACATAATATA TTATTGTATATACAAAAATCTAAGATATGTTAATTTTTAATCATGTATTATATAGTATGCTAATGTTAAG ACGTTATGTCATCATATTAGATTTTTAACATAAATATGAAAATAAAATTTATCAATTTAATATAATTTAT GATATTTAGTTCAATATAATAATTTAACATGATTGATTATGATTATAAAATAGATAAAGTAAGACATAAT TTCTATCTTTAATTTTATAAACAATAACTGAATATATATATATATTAATGCATAATAATAGTTCATTGCT AATTACGAAATTAGTGAAAATATTTATATAAACTTTTTGAAAATTAAGATATTGTTAAAATATTCAGATC AACATAATAAATTTTTTTAATATGATTGATTGTGATGATATAATAGATAAAAATATGATAAAATATTTAT TTTTCATTTTATAAACGATAACTGAATATATTAATGTATAATAATTTTGAAAATTAAGATTTTTTAAAAA TATTTTTAAACAGACTTTCAAAAATTTAATATATATATATATATGTATATATATATATTAAATGAAAAGA TATCAACAGATATTATGATTAAATTAGTTCAAAAATTTTATATATTATTAGTCCTATTAAAATACATATA ATCTGTTTTAAAAGATTAATTTTTTAACAAAATAAATTCTGAACGAAAAATATCATGGATAAATGTAGTT GCCGAAGTACAAGAGTGTCTTTCAACTCCATGATAGGGAACTACAAATACTCCACATATGACAGGTATGT GTGCAATGTTTCCTCTTTAGGAAGAGAGTTTTCTAGGATATGATTCCACTTTATAGCTGATTTTAGACTT AGCTCAAAGACTATTAATGTTCTTGGATGCTCGCCTTAGTCTTTTTAGGTTCAGAGTTTGTTGTGGCTGA TTACTAATTACTTTGCAAGTTTACTTCCTACTTGCATTCTTTTTATTAGTCTGGTTTGCAGTAGATTTTT TTCGTTTGATTTATCTTCAAAATCTTCTTTTTATACACTGCAAATCTTACATATACATCGTTCTCTTCGT CTCTTCTCCTAAAATTTTCTCCAGCTAGAATGATAATACCAAGAAATTTTTTAAAAATCATATATAATCC AATATCCGTTCCTCTATAACATGAAGGATATTAATGACGTATGCAGTCTCTCGTGCACCAATATCAGCTT CACATGTCATAACTTCGGTATATCTTCGAGTGGAACCACATGCCATCATTTTGTCTAAGTTGGTGATTTA ACAGTGTTATCCTTAAGAGTTAAAATGACAAGTTGTGTAAAAGAGGTGTGGATTTGCCAAATTATATAAT ACAATTCTACGGTTTTAGAATAAACTCGTTTAGTGAAATAATAATAATAATAATAATAATATTTTTTTAT GATCTAGTCTTATGTATTTGATCGCATACACAAAAACATAAAATTGTTTATAAGCTATTCGAATAAATTT TGATGTTTTTATATTTTTATATTCTCATTTCGGCAGATTTTTGGAGCAATCACAATTTCCTTCCTCTGAG ATAGGATAAATTTTAAAGTTCTGGCCGACTTAACAATGAACACATGATAAACACAAACAAATCAGATTCG AAGTTACGAGTGTACTTTGTGGTCTTTGAAGTGGTATCTACTTTCAGCAAATTCCTGGAGCAATATCTTT TAATGTTTTGGCTATCTAAACAATGAACACAATCCAATTTGAAAATTATCATTAGGCTTTTTTCGTGCTT GAATCTCAGCTTCTGTTTTTTTTCTCAGATCACTCAATGGCTAAAGATAGTTCACAAAAAATTGTGAGGG TATTTCGATTTAAAATTAGCTACGGCTGGTAAGAGATGACTGAGTTGGGCTGCATTTACCAAAGTCAAGA ACAAATCCATTGTGATTCTCATGCGGAGGTAGTCAGAGATAGTGCTCAAGAATGCACAACTTATCTGCCA AAATCAAGAAAGAATGCGCTGTGATTCTCGTGCTGAGGTAGTCGGAGATAGGGCTCAAGAATGCACAATT TTTGTTATAACTAAAAATGAAATTCAAATTTATAATTAAAATTGATTTGATATTAATATCTTTTTGATTA TTAATATTTTTTAAAATGTTATATATTTGATTGATTAATTTAAATAATCAAATATGTCATATTAATTAAT TAAATAGTTCTACTATGACTTGTCAACAATAGATAAAAATAGAAATTCTATTTAAGTGAAATAATAATAA TAATTTCTTTCATTTATGACTTATCAACAATAGATAAAAGGGCAATTCTCTCAAATAGATTTTTTTTTTT AATTTGTCACAAAAATAGACCCCAAAAACTAAAATGACAAAAATAGAATTTTTTATTTTAAAAATTTAAT TTTTTTTAATTTTTAAAATTTGAAATCTTATCCCCAAAACCCCACTCCTCAACTCTAAACTCTAAACCCT AAATCTTAAACCCTAAACTCCACTCCTTTACTTTAAACCCTAATGTCTAGATTAATTAACCCTAAGAGTA TAAGTGTATATTTACTTCTTTTGATAAAACATTTATAATTAATTAATTAATTAAATAGTAGATTCTTTAG AATTAAAATGACAAGGTGTAGAAAAAGGTAGAATCGCCAAGTTATATACTAATTCTATGTTTTTTTAGAA TAAACTCGTTTAGTGAAATAATAATAATAATTTCTTTCATTTATGATCCAGTCTTGTGTTTTGAGCGCAT ACACAAAAACAAAAAAATTGCTCATGAACTACTCAAATAGATTTTGATGTCTTTTTTTTTTTTTTTGCTA AATAGATTTTGATGTTTTTATATTTTTATATTCTTTTATAAATGCTCTGACGCATAAATCCGGTGTTCAT GAGTTTAGTTTAGGGCCAGCTGATTTTATCTGCAAGAAGAATTATTTTGGAGCTATATATTTGGTAACTG TGAAATACGATTTAGATGGTTATCTCACAACTCAAATATAACAAATTTGACCTACCATCTAGATGATTAT TACATGATGCTTAAAATGAAGTATATTTGATTGTTAGACGTCACATTAATATCACCCCTAAACTTTAAAA AGATTAGATACTTTCTTAATTTGATTAACATTTACAGAGCAAGAGACATGTCCATATATCACTGTCACTT AGTGAGCTGGAGAGGAAAGGAGCAGCAACCTGACGAGGACTTTTCCTAAACACATAATCTAAGCTTTACA GATCCACACATCACTCATGATGAGCTGGAGACGAAAGGCACGCATTAGTGGCAGTGACCAGAAGGACCCG TGTTCGAACTCCCTCAAAATAAACATCGTTTCTTTGTTACTTTCTCGACAACATCTCGAGATCTGAAACC TGATCCCTACCTTTTTCATTTCCCCTTCTCAAAAGTCGCGGCCTTTGAATAGTGTTCCTCTCTCATCAAA TCTCAGTTTTCAAGTGTTGACTCATTTCAAGATCTGGCTTATGTCATTATTCCCTTTATAAAGCTTTCTT CTTTCTTTCTTTTTTTAATCCCTTCCAGCTAGTAATACCGTAGTAGGTAACTTTTGGGTGGTCTTACTTG CTTTTCAGCAAAAAAAGCTGTCAACTTTCTTCTTGTCTTTGGGGATCTGAGCATCTCAGAAGCTTATATG GGAAATGGGTTTCTCGAAAGCATGATGCTTTCGCTGCCACTTGTAATCTCTTGCTGAAGACGAAGCAATG TGTAGGTAGGATGCAGAGTAGTTTATAGTTAGGTAGCTCATGAGTTCATTGGTACTTGGAGGACTCAAGA TGATTGACCAGTTCATCAACTTTGTTATTCGCCCTCCCAGGTACCTTTTGCTTCTCTAAAGTCTCAACCT TTTCTTGCATTCAACTGATTGGTAGCTGTTGGAACAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGA GAAGGACTTTAGCATCGGTGGCACAAAGTGTAAAAGGCAAGACTTGGAGGCAAGTATGATGTGCAAAACC AGTTACTGTTCTCTTCAATTAGTGGTTTCCTCATGTGGCTAATCTTAAAGGTCTTATGTTTTTTCTCTGA AGTAGCTTACAAATTCAAGGGGTCACACCTTGCGTTGCAGTCACTACATTCCTTCATCTTCTTTGGAGAA TACTACTCCTCTTCCTTGCGTTATATACTGCCATGGTAATAGGTACATAACTAAAGACTTTGCACACTCC TCTTCTTGGGAATGAATATTTGATGAATAAGAACTTCCATTTGATCAGTGGATGTAGGGCAGATGCAAAT GAGGCAGCAATGGTTCTTCTTCCATCTAACATTACTGTTTTCACACTTGACTTCTCCGGTTCTGGCTTAT CTGATGGTGATTATGTTAGCCTTGGCTGGCATGAGGTGTGTTTTCCTTGTTCTTACTTACTTCCATAGCC TTCTCTTTCTCTTCCAAATAGTTACACTAACCTTTTGCCTGTTAAACTTAAGCTAGAAAGATGATCTCAA GACTGTGGTTTCTTACCTGAGAAGCAGCAATCAGGTGTCTCGTATTGGACTTTGGGGACGGTCTATGGGT GCAGTTACCAGGTTACTTCTTGAACTAGCTCTTAATGTCTCATCAGCTTTCTTAATGTCTGTGATCTGGA ATGTGTTCCTTGTGTGGCTCTCTTCATCATTTAATGAAGTTGTTAATGAAATGTGCAGCCTTCTCTATGG AGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACAGTGCATTCTCAAACTTATTTGATCTTATGATG GAACTAGTGGATGTTTACAAGATCAGACTTCCTAAATTCACAGTATGCTCTCTTTTTCCCCCAAGTCATA TTCTTCATTGCTTATATCTTCACATGGCTACAAGAGTCCAAGAAGATAGTTCCCTCTCTTATCCCTTCCA ATGATGATAGCATACTGTAGACATTCTGAAACTCTTATCTCACTTTTCAATCAGGTTAAAGTGGCTGTAC AGTACATGCGGCGAGTAATTCAGAAAAAGGCCAAGTTTAATATCATGGATCTCAATTGTCTCAAGGTGTT ATTTAGTTACCTCTTTCTATATTCTTATTCAACATTTGCTCCAAATAATCTTAGCATGAGCTTTTCGATT TCTGTTCCCCCAGGTTTCACCAAAGACTTTTATTCCAGCTTTGTTTGGGCATGCAAGCGGAGACAAATTC ATCCAACCTCATCACTCTGACCACATTCTCAAGTGCTATGCGGTTAGATCAAAGTTGCTATCTTTTTTGC ATTCATGTCAGTGTTGTTTTTAATGTTATGTAGTAATCTTATAATGCAGGGAGACAAAAACATCATCAAG TTTGATGGTGATCACAACTCCTCACGGCCGCAGTTTTATTATGATTCAGTGTTAATATTCTTCTACAATG TTCTACGCCCGCCTCAAGTTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATAGCGCTGCTGGTTTGGA CGAGGTAGTTTGCACTCCTCCTCTGGATCAAGCAATCCAAATATCATGTCTGTTTATATGTCTACACTTA GATAGTATATAAACATAAAGATCTTGCCTAGACATTCTACTCGAGTCACTTACAAGGTAGCTCAAAATAG ATGAGGGTTAAGAACTTGTGGTCACACAGCATTATGGATTAATCTCAATTACAGTTAGCATGGTGAAATA TGATGCACATGAATCTAACTGCTTGGTTTTTCCTTGTACTGCCAGAATTTTCTGTATGAGATCATCTCTG GGCTTCGTTCGGCATGTATCGATGTTGCAAGTTCTTCTTCTTCTGCACCTCCTGCCTCTCTAACAACAAA GCCAACAAATGAGCTCATCTCAGAAGCCATGCCCATTATGGATACTGTATATTTTCTGTTGCATGAATTT TTATTTTCTTTTGCTTTGATTATTCCTTTTGATAAATCAAATCATTAATGAAACAGGATGACTTGCTTGT AGCAGACAATGATCAGAACATTGATGAACCTGAGGTAACTGGAGCATGTGGAAACACACAATTAATATAT ATATATATATATGATGACTTAGAGCTCCTTTTAAATGGAGTCCCTCAAGTGTTAGCCTTTATGAACCTTG CTGACATTATAGGTTTTGACTGTTGTTATTTGGCAGGGGATGCCTATTGATCAGTTTGAAGAAGGATGTT CATTCACAAGCTCTAACAGGGAAAGCTGGGGTAGATGCTCTTCACTAGGAGGCTCTGAAGAAGATGAGAG CTTGGCTGTCGGCGAGGGTGATCAGGTTAATGTTCTTTGAATCTTATACGAAGATGTTTGGATAGTTTCT GATTCATGCCTTCCAGGTCGAGAAAGCTGATATTGGAAACACAGAACAGAAGCCAATAGAGTCCACTAGA CAACAAGAAGAAGAAGAAAAAGAAGAGAGGAAGGAGAAGAAAATGAAGAAAGGAGTTGAAACAGATGCAA AGAAGCCTAAACGAGAGAAACTGGAAAGGTTAGAGGCTTTCAGCAAAAGACTCAGGCTTGGCATCATAAA GCGAGTAAACCATGGAAGACACCGTTCTTCGCAACCTTAACAACAAAGTTCAACAAAATACTCTAAATTT GTTATATATGTTCTCTGCATCTTGCCATGTACACATGCAGCAAATCAAATATGTACTACCGTATCGATTG TCATTGCAAATGGACTACATTCCTAATCATATCCTTAGATAATCAAACACACTTCTTTTAGATAAATTAA TAATCCGTCCCGAGCTTCACCAGAACACAAGTCACCAAATCGAAAATAAAATGGATTTACAACAGTAGAA AAAAGAATCACAGAAGTTTTTGTTCACATCATTATGTGATGATTGTTTTATACGTGATGATATAGACACA CCATTATTAATAGATTAGCCGCAGCAACCTCCTTGCGGTGT From adsj at novozymes.com Tue Jun 1 13:42:02 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Tue, 01 Jun 2010 15:42:02 +0200 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: (Chris Fields's message of "Wed, 26 May 2010 06:53:50 -0500") References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> Message-ID: <87eigqj2dx.fsf@topper.koldfront.dk> Ok, so coming back to the reason for the changes in my fork?. It has been a while (the test in the application I am working on is from August 2007, so I have been using/carrying the patch for three years?), so I have to dig a little before it comes back to me. Basically, I would like to make a class that inherits from Bio::Seq::RichSeq and extends it. When I call ->seq on features on my modules, I'd like to get an object of my own type back. That sounds a little convoluted, so let me illustrate my thinking with a self-contained script you can run: = = = #!/usr/bin/perl use strict; use warnings; use Bio::SeqFeature::Generic; my $seq=MySeq->new(-seq=>'actg'); $seq->extra_method; print "len: " . length($seq->seq) . "\n"; my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); $new_feature->add_tag_value(note=>'test'); $seq->add_SeqFeature($new_feature); foreach my $feature ($seq->get_SeqFeatures) { my $obj=$feature->seq; print ref($obj) . "len: " . length($obj->seq); print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; $obj->extra_method; } exit 0; package MySeq; use base qw(Bio::Seq::RichSeq); sub extra_accessor { # ... } sub extra_method { # ... print "extra_method called\n"; } # ... 1; = = = The output I expect (what my changes give rise to) is: extra_method called len: 4 MySeqlen: 2 OK extra_method called But the output I get is: extra_method called len: 4 Bio::PrimarySeqlen: 2 FAIL Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. That is what the changes on my fork try to address. If there is a better way to accomplish the same result, I'd be flowing over with joy :-) Best regards, Adam ? http://github.com/adsj/bioperl-live - this commit in particular: - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 ? There actually was a little discussion about this, way back, on this list: * Thread start, Oct 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 * Patch as per suggestions from Hilmar Lapp, Nov 2006: - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 -- Adam Sj?gren adsj at novozymes.com From maj at fortinbras.us Tue Jun 1 16:36:00 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Tue, 1 Jun 2010 12:36:00 -0400 Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation In-Reply-To: <1275379428.24468.20.camel@lafs-746g12s> References: <1275379428.24468.20.camel@lafs-746g12s> Message-ID: <3666E24BF5BC4A17935800B99A2C1C4A@NewLife> Thanks Jiri, I've created a bug report and assigned it to myself. See http://bugzilla.open-bio.org/show_bug.cgi?id=3088 cheers, Mark ----- Original Message ----- From: "Jiri Stiller" To: Sent: Tuesday, June 01, 2010 4:03 AM Subject: [Bioperl-l] Bio::Assembly::Contig object does not contain reads in opposite orientation > Hi, > I am trying to process bam file using Bio::Assembly::IO. I attached test > script and output. > When I am retrieving contigs I get correct contig number and position > but contig objects build from reads of different orientation don't > contain any read sequences. Contigs built from the reads of the same > orientations are fine. > > Your help/advice would be greatly appreciated. > > Cheers, > > -- > Jiri Stiller > Senior Bioinformatics Researcher > Australian Centre for Plant Functional Genomics > School of Land, Crop and Food Sciences > University of Queensland > Brisbane QLD 4072 > > j.stiller at uq.edu.au > Phone: +61 (0)7 3346 7082 > Mobile: +61 (0) 422 941 581 > Fax: +61 (0)7 3365 1177 > > > -------------------------------------------------------------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Tue Jun 1 17:38:46 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 12:38:46 -0500 Subject: [Bioperl-l] return type of $feature->seq() (comments on a commit [bioperl/bioperl-live fcd90e0]) In-Reply-To: <87eigqj2dx.fsf@topper.koldfront.dk> References: <4bfc2cd094654_19c63fd441d592ec4b0@fe3.rs.github.com.tmail> <9B378E57-CB44-4C3B-88C0-F65B78B83F28@gmx.net> <87zkznb4nz.fsf@topper.koldfront.dk> <87eigqj2dx.fsf@topper.koldfront.dk> Message-ID: <17457107-2C9F-4F07-9BD5-EEA17F2F4901@illinois.edu> On Jun 1, 2010, at 8:42 AM, Adam Sj?gren wrote: > Ok, so coming back to the reason for the changes in my fork?. > > It has been a while (the test in the application I am working on is from > August 2007, so I have been using/carrying the patch for three years?), > so I have to dig a little before it comes back to me. > > Basically, I would like to make a class that inherits from > Bio::Seq::RichSeq and extends it. When I call ->seq on features on my > modules, I'd like to get an object of my own type back. > > That sounds a little convoluted, so let me illustrate my thinking with a > self-contained script you can run: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use Bio::SeqFeature::Generic; > > my $seq=MySeq->new(-seq=>'actg'); > $seq->extra_method; > print "len: " . length($seq->seq) . "\n"; > > my $new_feature=Bio::SeqFeature::Generic->new(-primary=>'source', -start=>2, -end=>3, -strand=>1); > $new_feature->add_tag_value(note=>'test'); > $seq->add_SeqFeature($new_feature); > > foreach my $feature ($seq->get_SeqFeatures) { > my $obj=$feature->seq; > print ref($obj) . "len: " . length($obj->seq); > print $obj->can('extra_method') ? " OK\n" : " FAIL\n"; > $obj->extra_method; > } > > exit 0; > > package MySeq; > > use base qw(Bio::Seq::RichSeq); > > sub extra_accessor { > # ... > } > > sub extra_method { > # ... > print "extra_method called\n"; > } > > # ... > > 1; > = = = > > The output I expect (what my changes give rise to) is: > > extra_method called > len: 4 > MySeqlen: 2 OK > extra_method called > > But the output I get is: > > extra_method called > len: 4 > Bio::PrimarySeqlen: 2 FAIL > Can't locate object method "extra_method" via package "Bio::PrimarySeq" at ./seq_inh_test.pl line 21. > > That is what the changes on my fork try to address. > > If there is a better way to accomplish the same result, I'd be flowing > over with joy :-) > > > Best regards, > > Adam > > > ? http://github.com/adsj/bioperl-live - this commit in particular: > - http://github.com/adsj/bioperl-live/commit/24ec961b217084e248f4fdbd174aadace1a27ac4 > > ? There actually was a little discussion about this, way back, on this > list: > > * Thread start, Oct 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13224 > * Patch as per suggestions from Hilmar Lapp, Nov 2006: > - http://article.gmane.org/gmane.comp.lang.perl.bio.general/13349 > > -- > Adam Sj?gren > adsj at novozymes.com This is where some of the confusion lies: Bio::Seq is both a Bio::SeqI and a Bio::PrimarySeqI. This inheritance just indicates Bio::Seq fulfills both interface methods, but note that the way this is done (regarding PrimarySeqI) is the methods delegate to a PrimarySeqI (normally a simple Bio::PrimarySeq) contained within Bio::Seq. A Bio::Seq's contained SeqFeatures are attached to this, not to the Bio::Seq itself, for a very good reason: no circular references (so no need for Scalar::Util::weaken). If you are subclassing MySeq from Bio::Seq (or RichSeq in this case), maybe the way to go is to subclass a similar MyPrimarySeq class that does what you need, bless any data from the MySeq constructor into the new MyPrimarySeq, then add methods that delegate to that within MySeq. Does that make sense? chris From robfsouza at gmail.com Tue Jun 1 20:23:41 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 16:23:41 -0400 Subject: [Bioperl-l] blastxml to table Message-ID: Hello! I'm trying to convert BLAST XML output to a BLAST table which should be identical to a BLAST output generated using "-m 8". In the script below, if $type is "BLAST", the script works if $writer is TextResultWriter but when I try to generate BLAST compatible (i.e. like "-m 8") tables using $writer = "HSPTableWriter" it fails with the message Using default column map. ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't locate object method "iteration" via package "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. STACK: Error::throw STACK: Bio::Root::Root::throw /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 STACK: try{} block /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 STACK: Bio::SearchIO::write_result /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 ----------------------------------------------------------- Is there a way to fix this? Or should I use another approach to get "-m 8" compatible tables? Thanks, Robson #!/usr/bin/env perl #==================== use strict; use warnings; use Bio::SearchIO; use Getopt::Long; my $writer = "TextResultWriter"; my $type = "PSIBLAST"; GetOptions("w=s"=>\$writer, "t=s" => \$type); # Load writer use Module::Load; my $writer = "Bio::SearchIO::Writer::".$writer; load $writer; $writer = $writer->new(); # Open and convert input my $out = Bio::SearchIO->new(-writer => $writer); foreach my $file (@ARGV) { my $in = Bio::SearchIO->new(-format => "blastxml", -file => "<$file"); $in->blasttype($type); while( my $r = $in->next_result) { $out->write_result($r); } } exit 0; From cjfields at illinois.edu Tue Jun 1 21:47:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 1 Jun 2010 16:47:48 -0500 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. Can you report this? I can't get to it (going out of town until Friday). chris On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > Hello! > > I'm trying to convert BLAST XML output to a BLAST table which should > be identical to a BLAST output generated using "-m 8". > In the script below, if $type is "BLAST", the script works if $writer > is TextResultWriter but when I try to generate BLAST compatible (i.e. > like "-m 8") tables using $writer = "HSPTableWriter" it fails with the > message > > Using default column map. > > ------------- EXCEPTION: Bio::Root::Exception ------------- > MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't > locate object method "iteration" via package > "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. > > STACK: Error::throw > STACK: Bio::Root::Root::throw > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 > STACK: try{} block > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 > STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 > STACK: Bio::SearchIO::write_result > /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 > STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 > ----------------------------------------------------------- > > Is there a way to fix this? Or should I use another approach to get > "-m 8" compatible tables? > Thanks, > Robson > > #!/usr/bin/env perl > #==================== > > use strict; > use warnings; > use Bio::SearchIO; > use Getopt::Long; > > my $writer = "TextResultWriter"; > my $type = "PSIBLAST"; > GetOptions("w=s"=>\$writer, > "t=s" => \$type); > > # Load writer > use Module::Load; > my $writer = "Bio::SearchIO::Writer::".$writer; > load $writer; > $writer = $writer->new(); > > # Open and convert input > my $out = Bio::SearchIO->new(-writer => $writer); > foreach my $file (@ARGV) { > my $in = Bio::SearchIO->new(-format => "blastxml", > -file => "<$file"); > $in->blasttype($type); > while( my $r = $in->next_result) { > $out->write_result($r); > } > } > > exit 0; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From robfsouza at gmail.com Tue Jun 1 23:16:04 2010 From: robfsouza at gmail.com (Robson de Souza) Date: Tue, 1 Jun 2010 19:16:04 -0400 Subject: [Bioperl-l] blastxml to table In-Reply-To: References: Message-ID: Hi Chris, just submitted the problem to Bugzilla (Bug 3089). Robson On Tue, Jun 1, 2010 at 5:47 PM, Chris Fields wrote: > That's a bug; it appears the iteration method is being called w/o checking whether the specific Hit class has implemented it. ?Can you report this? ?I can't get to it (going out of town until Friday). > > chris > > On Jun 1, 2010, at 3:23 PM, Robson de Souza wrote: > >> Hello! >> >> I'm trying to convert BLAST XML output to a BLAST table which should >> be identical to a BLAST output generated using "-m 8". >> In the script below, if $type is "BLAST", the script works if $writer >> is TextResultWriter but when I try to generate BLAST compatible (i.e. >> like "-m 8") tables using $writer = "HSPTableWriter" it fails with the >> message >> >> Using default column map. >> >> ------------- EXCEPTION: Bio::Root::Exception ------------- >> MSG: Trouble in ResultTableWriter::_set_row_data_func() eval: Can't >> locate object method "iteration" via package >> "Bio::Search::Hit::GenericHit" at (eval 58) line 1, line 3020. >> >> STACK: Error::throw >> STACK: Bio::Root::Root::throw >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/Root/Root.pm:368 >> STACK: try{} block >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/ResultTableWriter.pm:339 >> STACK: Bio::SearchIO::Writer::HSPTableWriter::to_string >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO/Writer/HSPTableWriter.pm:263 >> STACK: Bio::SearchIO::write_result >> /panfs/pan1/proteinworld/tools/perl/lib/site_perl/5.8.8/Bio/SearchIO.pm:344 >> STACK: /home/desouza/projects/mytools/bin/blastxml2blast:22 >> ----------------------------------------------------------- >> >> Is there a way to fix this? Or should I use another approach to get >> "-m 8" compatible tables? >> Thanks, >> Robson >> >> #!/usr/bin/env perl >> #==================== >> >> use strict; >> use warnings; >> use Bio::SearchIO; >> use Getopt::Long; >> >> my $writer = "TextResultWriter"; >> my $type = "PSIBLAST"; >> GetOptions("w=s"=>\$writer, >> ? ? ? ? ? ? ? ? "t=s" => \$type); >> >> # Load writer >> use Module::Load; >> my $writer = "Bio::SearchIO::Writer::".$writer; >> load $writer; >> $writer = $writer->new(); >> >> # Open and convert input >> my $out = Bio::SearchIO->new(-writer => $writer); >> foreach my $file (@ARGV) { >> ? my $in = Bio::SearchIO->new(-format => "blastxml", >> ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? -file ? => "<$file"); >> ? $in->blasttype($type); >> ? while( my $r = $in->next_result) { >> ? ? ? $out->write_result($r); >> ? } >> } >> >> exit 0; >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From dimitark at bii.a-star.edu.sg Wed Jun 2 04:34:22 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Wed, 02 Jun 2010 12:34:22 +0800 Subject: [Bioperl-l] general perl question Message-ID: <4C05DF4E.2090507@bii.a-star.edu.sg> Hi guys, firstly i am sorry ive sent this email first to the wrong email(bioperl-l-request at lists.open-bio.org). Secondly, i am sorry to bother you with such problem but i do not know how to google that one :) Here is the problem. I want to start several simultaneous processes through my script but i found i cant do that unless i start them as background processes because otherwise 'system' waits for the process to exit. Now i use something like this: my @args=("$program $seqinput $$specname $eval &"); system(@args) == 0 or die "system @args failed: $!"; But that is a bit weird when i want to terminate the program then all the processes are still running and i have to kill them manually. Is there a way to start several simultaneous processes without '&'? Thank you for your patience and help Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Wed Jun 2 05:00:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 2 Jun 2010 17:00:33 +1200 Subject: [Bioperl-l] general perl question In-Reply-To: <4C05DF4E.2090507@bii.a-star.edu.sg> References: <4C05DF4E.2090507@bii.a-star.edu.sg> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B66A8@exchsth.agresearch.co.nz> It's not really a BioPerl question, more one of reading the Perl documentation. There's several ways of executing commands from Perl: * The exec() function executes a system command and never returns * system() exactly the same thing as exec(), except that a fork is done first, and the parent process waits for the child process to exit * backticks Eg. $date=`/usr/bin/date`; * open() and parse Eg. open PS, "/usr/bin/ps -ef |"; Up to you which you use, --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dimitar Kenanov > Sent: Wednesday, 2 June 2010 4:34 p.m. > To: 'bioperl-l at bioperl.org' > Subject: [Bioperl-l] general perl question > > Hi guys, > firstly i am sorry ive sent this email first to the wrong > email(bioperl-l-request at lists.open-bio.org). > > Secondly, i am sorry to bother you with such problem but i do not know > how to google that one :) > Here is the problem. I want to start several simultaneous processes > through my script but i found i cant do that unless i start them as > background processes because otherwise 'system' waits for the process to > exit. Now i use something like this: > > my @args=("$program $seqinput $$specname $eval &"); > system(@args) == 0 or die "system @args failed: $!"; > > But that is a bit weird when i want to terminate the program then all > the processes are still running and i have to kill them manually. > > Is there a way to start several simultaneous processes without '&'? > > Thank you for your patience and help > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From staffa at niehs.nih.gov Wed Jun 2 20:32:59 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Wed, 2 Jun 2010 16:32:59 -0400 Subject: [Bioperl-l] rebase file withrefm Message-ID: Could someone please tell me where in a normal bioperl installation the rebase file withrefm downlaoded from NEB goes. Thank You Nick Staffa Telephone: 919-316-4569 (NIEHS: 6-4569) Scientific Computing Support Group NIEHS Enterprise-Wide Information Technology Support Contract National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park, North Carolina From pengyu.ut at gmail.com Wed Jun 2 21:35:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 2 Jun 2010 16:35:13 -0500 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? Message-ID: Hi, I'm interested in query some keywords and retrieve the results automatically. For example, I go to the above webpage and query BIC. Then I get 1167 results. http://www.ncbi.nlm.nih.gov/sites/entrez I'm wondering if there is any tool in bioperl to help me retrieve query results. In particular, I also want to retrieve the MeSH terms, links to the papers, paper titles and abstracts. Would you please point me what tool I should use? -- Regards, Peng From florent.angly at gmail.com Wed Jun 2 23:27:58 2010 From: florent.angly at gmail.com (Florent Angly) Date: Thu, 03 Jun 2010 09:27:58 +1000 Subject: [Bioperl-l] Does bioperl support the search in pubmed and the retrieval of the results? In-Reply-To: References: Message-ID: <4C06E8FE.30106@gmail.com> Hi Peng, I think you could do all of this with Bio::DB::EUtilities See http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook Florent On 03/06/10 07:35, Peng Yu wrote: > Hi, > > I'm interested in query some keywords and retrieve the results automatically. > > For example, I go to the above webpage and query BIC. Then I get 1167 > results. > > http://www.ncbi.nlm.nih.gov/sites/entrez > > I'm wondering if there is any tool in bioperl to help me retrieve > query results. In particular, I also want to retrieve the MeSH terms, > links > to the papers, paper titles and abstracts. Would you please point me > what tool I should use? > > From dimitark at bii.a-star.edu.sg Thu Jun 3 03:15:36 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Thu, 03 Jun 2010 11:15:36 +0800 Subject: [Bioperl-l] BlastPlusMethods Message-ID: <4C071E58.3070008@bii.a-star.edu.sg> Hi guys, i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize the psiblast(and most probably rps and rpst) result and therefore doesnt parse it. The problem was in the 'run' method where the match doesnt match properly: ------ m/^[t]?blast[npx]/ && do { ------- So i modified it pretty ugly into the following but now it works for me: ------ m/^(t|psi|rps|rpst)?blast[npx]?/ && do { ------ I dont know if it may be more beautiful but i suppose it could :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From maj at fortinbras.us Thu Jun 3 16:29:31 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Thu, 3 Jun 2010 12:29:31 -0400 Subject: [Bioperl-l] BlastPlusMethods In-Reply-To: <4C071E58.3070008@bii.a-star.edu.sg> References: <4C071E58.3070008@bii.a-star.edu.sg> Message-ID: Hey Dimitar, Beauty is in the eye of the beholder. Looks beautiful (since it works) to me. Can you do a git pull request on this? The guys who understand those things can then pull it in-- Thanks Mark ----- Original Message ----- From: "Dimitar Kenanov" To: Sent: Wednesday, June 02, 2010 11:15 PM Subject: [Bioperl-l] BlastPlusMethods > Hi guys, > i found that the module BlastMethods for StandAloneBlastPlus doesnt recognize > the psiblast(and most probably rps and rpst) result and therefore doesnt parse > it. The problem was in the 'run' method where the match doesnt match properly: > ------ > m/^[t]?blast[npx]/ && do { > ------- > > So i modified it pretty ugly into the following but now it works for me: > ------ > m/^(t|psi|rps|rpst)?blast[npx]?/ && do { > ------ > I dont know if it may be more beautiful but i suppose it could :) > > Cheers > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From David.Messina at sbc.su.se Thu Jun 3 17:45:19 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 19:45:19 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From staffa at niehs.nih.gov Thu Jun 3 17:59:20 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 13:59:20 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <14B97DE0-220C-4CA7-BCB1-E0AB9FC4E4E6@sbc.su.se> Message-ID: I was thinking about where the default restriction information is kept. I remember trying to use the withrefm file in the manner outlined below, and it didn't work. I did not know about File::Temp. I must find out about this. On 6/3/10 1:45 PM, "Dave Messina" wrote: Hi Nick, > Could someone please tell me where in a normal bioperl installation the > rebase file withrefm downlaoded from NEB goes. Are you talking about when using the (apparently undocumented) invocation of Bio::Restriction::IO to have BioPerl grab the latest rebase file itself via FTP? i.e. my $io = Bio::Restriction::IO->new('-format' => 'withrefm', '-current' => 1); If so, it's written to a temporary file via File::Temp, so the location is OS-dependent and determined at runtime. If you're not talking about that, though, could you please clarify? Dave From David.Messina at sbc.su.se Thu Jun 3 18:14:55 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 3 Jun 2010 20:14:55 +0200 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: References: Message-ID: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From staffa at niehs.nih.gov Thu Jun 3 18:17:42 2010 From: staffa at niehs.nih.gov (Staffa, Nick (NIH/NIEHS) [C]) Date: Thu, 3 Jun 2010 14:17:42 -0400 Subject: [Bioperl-l] rebase file withrefm In-Reply-To: <4AC9EE67-3A57-4E1F-8E71-81FD4CC6E647@sbc.su.se> Message-ID: Thanks Muchly. I'll give it a try. On 6/3/10 2:14 PM, "Dave Messina" wrote: > I was thinking about where the default restriction information is kept. The default restriction information is embedded in Bio::Restriction::IO::Base, not downloaded. That is, look at the bottom of the file bioperl-live/Bio/Restriction/IO/base.pm, and you'll see the default set hardcoded there. > I remember trying to use the withrefm file in the manner outlined below, and it didn't work. It works in my hands. Here's example code http://gist.github.com/424246 which should produce the output EcoRI is: G^AATTC (along with a trivial warning on STDERR) If you absolutely want to work from the latest downloaded rebase file, you probably will want to download the file yourself and pass it directly to RestrictionIO, a la: my $re_io = Bio::Restriction::IO->new(-file => 'mydownloadedREBASEfile', -format=>'withrefm'); Dave From gopal.cshl at gmail.com Fri Jun 4 11:23:59 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 07:23:59 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast Message-ID: Hi, I am trying to run standalone blast and parse the files, both using BioPerl. When running a moderately big file, I keep getting this message: "Error in tempfile() using /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not create temp file /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. please help me how to fix this problem, thanks, -gopal From pengyu.ut at gmail.com Fri Jun 4 14:47:13 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 09:47:13 -0500 Subject: [Bioperl-l] How to print get_available_databases? Message-ID: Hi, I want to print get_available_databases using foreach. But it prints all 1's. I know that this is a perl question. But I still ask it here because people on a more general perl mailing may not have bioperl installed. use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar',); print $factory->get_available_databases, "\n"; print "available databases: \n\t", join("\n\t",$factory->get_available_databases),"\n"; foreach($factory->get_available_databases) { print print "\n"; } -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 15:10:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:10:48 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: You should post code examples that cause the problem (the more concise the better). My guess is you are somehow caching the files by persisting the SearchIO instances; files for these are normally cleaned up when the SearchIO instance is destroyed. If needed you can also call cleanup() from the standaloneblast instance to clean them up manually. chris On Jun 4, 2010, at 6:23 AM, Gopal wrote: > Hi, > > I am trying to run standalone blast and parse the files, both using BioPerl. > > When running a moderately big file, I keep getting this message: > > "Error in tempfile() using > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > create temp file > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many open > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > please help me how to fix this problem, > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 4 15:14:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 10:14:08 -0500 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <8F4443A9-6517-400F-AA9E-B00F511CC600@illinois.edu> On Jun 4, 2010, at 9:47 AM, Peng Yu wrote: > Hi, > > I want to print get_available_databases using foreach. But it prints > all 1's. I know that this is a perl question. But I still ask it here > because people on a more general perl mailing may not have bioperl > installed. > > ... > foreach($factory->get_available_databases) { > print > print "\n"; > } > > > -- > Regards, > Peng You are missing a semicolon: foreach($factory->get_available_databases) { print; print "\n"; } Without it, the first print() prints the results of the second print() (which prints the newline), which evals to success, or 1. chris From asidhu at biomap.org Fri Jun 4 15:33:44 2010 From: asidhu at biomap.org (Amandeep Sidhu) Date: Fri, 4 Jun 2010 23:33:44 +0800 Subject: [Bioperl-l] CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010) Message-ID: IEEE CBMS 2010 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 Perth, Australia, 12-15 October 2010 http://www.cbms2010.curtin.edu.au/ The 23rd IEEE International Symposium on Computer-Based Medical Systems (CBMS 2010) is intended to provide an international forum for discussing the latest results in the field of computational medicine. The scientific program of CBMS 2010 will consist of invited keynote talks given by leading scientists in the field, and regular and special track sessions that cover a broad array of issues which relate computing to medicine. RELEVANT TOPICS Network and Telemedicine Systems Medical Databases & Information Systems Computer-Aided Diagnosis Medical Devices with Embedded Computers Bioinformatics in Medicine Software Systems in Medicine Pervasive Health Systems and Services Web-based Delivery of Medical Information Medical Image Segmentation & Compression Content Analysis of Biomedical Image Data Knowledge-Based & Decision Support Systems Hand-held Computing Applications in Medicine Knowledge Discovery & Data Mining Signal and Image Processing in Medicine Multimedia Biomedical Databases CBMS 2010 invites original previously unpublished contributions that are not submitted concurrently to a journal or another conference. Many of the above listed topics are represented by corresponding Special Tracks, while others are solely covered by the general CBMS track. Prospective authors are expected to submit their contributions to one of the corresponding Special Tracks or to the general track if none of the special tracks is relevant. SPECIAL TRACKS ST1: Computational Proteomics and Genomics ST2: Knowledge Discovery and Decision Systems in Biomedicine ST3: Ontologies for Biomedical Systems ST4: HealthGrid & Cloud Computing ST5: Technology Enhanced Learning in Medical Education ST6: Intelligent Patient Management ST7: Data Streams in Healthcare ST8: Supporting Collaboration among Healthcare Workers ST9: Telemedicine ST10: Computer-Based Systems for Mental Health ST11: Image Informatics in Biomedical Research and Clinical Medicine ST12: e-Health SUBMISSION GUIDELINES Papers should be submitted electronically using EasyChair online submission system. The papers must be prepared following the IEEE two-column format and should not exceed the length of 6 (six) Letter-sized pages. LaTeX or Microsoft Word templates can be used when preparing the papers. Please, note that only PDF format of submissions is allowed. Submission web site: http://www.easychair.org/conferences/?conf=cbms2010 All submissions will be peer-reviewed by at least three reviewers. The proceedings will be published by the IEEE Computer Society Press. At least one of the authors of accepted papers is required to register and present the work at the conference; otherwise their papers will be removed from the digital library after the conference. IMPORTANT DATES Submission deadline for regular papers: 24 June 2010 Deadline for tutorial submission: 24 June 2010 Notification of acceptation for papers and tutorials: 2 Aug 2010 Final camera ready due: 2 Sep 2010 Author registration: 2 Sep 2010 INTENDED AUDIENCE Engineers, scientists, clinicians and managers involved in medical computing projects are encouraged to submit papers to the symposium and/or attend the symposium. The symposium provides its attendees with an opportunity to experience state-of-the-art research and development in a variety of topics directly and indirectly related to their own work. In addition to research papers, keynote speakers and tutorial sessions it provides participants with an opportunity to come up-to-date on important technological issues. The symposium encourages the participation of students engaged in research/development in computer-based medical systems. Organizing Committee GENERAL CHAIRS Tharam Dillon, Curtin University of Technology, Australia Daniel Rubin, National Center for Biomedical Ontologies, USA William Gallagher, University College Dublin, Ireland PROGRAM CHAIRS Amandeep Sidhu, Curtin University of Technology, Australia Alexey Tsymbal, Siemens, Germany PUBLICATION CHAIRS Mykola Pechenizkiy, Eindhoven University of Technology, Netherlands Tony Hu, Drexel University, USA SPECIAL TRACK CHAIRS Maja Hadzic, Curtin University of Technology, Australia Jake Chen, Indiana University, USA TUTORIAL CHAIRS Phoebe Chen, La Trobe University, Australia Xiaofang Zhou, University of Queensland, Australia PUBLICITY CHAIRS Carolyn McGregor, University of Ontario Institute of Technology, Canada Meifania Chen, Curtin University of Technology, Australia From David.Messina at sbc.su.se Fri Jun 4 15:39:44 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 4 Jun 2010 17:39:44 +0200 Subject: [Bioperl-l] How to print get_available_databases? In-Reply-To: References: Message-ID: <1402B6DE-5EB6-4436-B139-704C7DA66F1C@sbc.su.se> Hi Peng, In your code > foreach($factory->get_available_databases) { > print > print "\n"; > } > You're not printing anything that's coming from get_available_databases. You say print print Which means print the return value from the print command, which is true, or in other words, '1'. Not what you want. Here you have encountered the peril of implicit variables. When you write a foreach loop, the idea is to put a name on each item, one after the other, from an array of items. So it's good idea to be explicit about what that name is. For example: foreach my $database ($factory->get_available_databases) { print $database, "\n"; } In this way it's much clearer what you are doing (and it actually works! :) ). Dave From gopal.cshl at gmail.com Fri Jun 4 15:45:03 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 11:45:03 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: Hi Chris, this is the code. Sorry I did not realize I should post the code: my @params = ( program => 'blastp', database => '/Users/XXX/Desktop/genomes/BAA/all.faa'); my $blast_obj = Bio::Tools::Run::StandAloneBlast->new(@params); my $in= $ARGV[0]; print "Query_name\t". "Hit name\t" ."Hit description\t" ."Hit length\t" . "percent_identity\t" . "start('hit')\t" ."end('hit')\t" ."start('query')\t" . "start('query')\n"; my $seqio_obj = Bio::SeqIO->new(-file=> '2cs2151.fasta', '-format' => 'Fasta'); #print $seq_in->name."\n"; my @seq_array =(); my $seqc=1; my $blast_report; my @reports; my @hits; while( my $input = $seqio_obj->next_seq() ) { # $blast_report = $blast_obj->blastall($input); push(@reports,$blast_report); } foreach(@reports){ #print $_->next_result->num_hits."xxx\n"; while(my $result=$_->next_result){ #if($result->num_hits){ my @stats = $result->available_statistics; my @params = $result->available_parameters; while(my $hit= $result->next_hit){ while ( my $hsp = $hit->next_hsp ) { if ($hsp->percent_identity >=90){ my $id = $hit->matches('id'); my $cons = $hit->matches('cons'); my @accs = $hit->each_accession_number; my @qidentical = $hit->seq_inds('query','identical'); my @qconserved = $hit->seq_inds('query','conserved'); my @hidentical = $hit->seq_inds('hit','identical'); my @hconserved = $hit->seq_inds('hit','conserved'); #loop 2b stuff removed from here print $result->query_name. "\t"; my $name= fix_name($hit->name); print $name . "\t"; #print "Hit\taccession\t" . $hit->accession . "\n"; if($hit->description=~/.+(.ESA.+\d+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+)\s*\[Cronobacter sakazakii.+/){ print $1." [cs894]"."\t"; }elsif($hit->description=~/(.+\w)\s*\[.+turicensis.+/){ print $1." [ct3032]"."\t"; }else{ print $hit->description . "\t"; } print $hit->length . "\t"; my @hrange = $hsp->range('hit'); my @qrange = $hsp->range('query'); my $aln = $hsp->get_aln; my $alnIO = Bio::AlignIO->new(-format=>"clustalw"); my $p=sprintf("%.1f", $hsp->percent_identity); print $p. "\t"; # print "HSP\tstrand()\t" . $hsp->strand() . "\n"; print $hsp->start('hit') . "\t"; print $hsp->end('hit') . "\t"; print $hsp->start('query') . "\t"; print $hsp->end('query') . "\n"; # print "HSP\talignment\n"; # print $alnIO->write_aln($aln); } } } #} } } On Fri, Jun 4, 2010 at 11:10 AM, Chris Fields wrote: > You should post code examples that cause the problem (the more concise the > better). My guess is you are somehow caching the files by persisting the > SearchIO instances; files for these are normally cleaned up when the > SearchIO instance is destroyed. > > If needed you can also call cleanup() from the standaloneblast instance to > clean them up manually. > > chris > > > On Jun 4, 2010, at 6:23 AM, Gopal wrote: > > > Hi, > > > > I am trying to run standalone blast and parse the files, both using > BioPerl. > > > > When running a moderately big file, I keep getting this message: > > > > "Error in tempfile() using > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/XXXXXXXXXX: Could not > > create temp file > > /var/folders/lJ/lJxoSpu4FYukooFDUoeLWIJTR5g/-Tmp-/RLI8KU9LSL: Too many > open > > files at /Library/Perl/5.10.0/Bio/Root/IO.pm line 719" > > > > I am running on Mac OS Snow Leapord and my Perl, BioPerl are current. > > > > please help me how to fix this problem, > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From jessica.sun at gmail.com Fri Jun 4 16:03:06 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 4 Jun 2010 12:03:06 -0400 Subject: [Bioperl-l] Highlighted short sequences Message-ID: Does any one know if there is any existing function of bioperl that can locate and highlighted short stretch of nt sequences within long genomic sequences ? Thanks in advance. -- Jessica Jingping Sun From pengyu.ut at gmail.com Fri Jun 4 16:15:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:15:10 -0500 Subject: [Bioperl-l] The usage of $field->$_ Message-ID: In the Eutilities cookbook, http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook I see the following code, print join(',', grep {$field->$_} qw(is_date is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; I'm not quite familiar with the usage of $field->$_. I don't see where it is covered in man perlvar (I don't the usage of $_ for pattern matching, but not in $variable->$). Would you please let me know where is the document that explain this usage? -- Regards, Peng From pengyu.ut at gmail.com Fri Jun 4 16:33:10 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:33:10 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? Message-ID: Hi, It seems that term_count is not available for einfo. $ ./main.pl Can't locate object method "term_count" via package "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. $ vim ./main.pl pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ cat ./main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', -email => 'mymail at foo.bar', -db => 'pubmed'); while (my $field = $factory->next_FieldInfo) { print "term_count: ",$field->term_count,"\n"; } But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' doesn't say so. Could you let me know where to find which methods are available for which eutilities? -- Regards, Peng From cjfields at illinois.edu Fri Jun 4 16:44:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 4 Jun 2010 11:44:44 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: Message-ID: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> On Jun 4, 2010, at 10:45 AM, Gopal wrote: > Hi Chris, > > this is the code. Sorry I did not realize I should post the code: > > > ... > while( my $input = $seqio_obj->next_seq() ) { > # > $blast_report = $blast_obj->blastall($input); > > push(@reports,$blast_report); > > } > ... Yep, you're caching your SearchIO instances here. No need; if you want to cache you should cache the Result object instead. Something like push(@reports, $blast_report->next_result); Probably best to rethink this strategy unless you have absolutely no other way to deal with your data, if you have lots of BLAST reports you will suck up memory very quickly. > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 chris From pengyu.ut at gmail.com Fri Jun 4 16:57:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 11:57:43 -0500 Subject: [Bioperl-l] get_dbfrom document Message-ID: According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, get_dbfrom is alias for get_db(). get_dbfrom Title : get_dbfrom Usage : my $origdb = $link->get_dbfrom; Function : returns referring database Returns : string Args : none Note : alias for get_db() I'm not sure what get_db() is but I only see get_db. Is get_db the same as get_db()? If this is true, then get_dbfrom is not an alias for get_db, because I get different result for the two variables. Am I understanding it correctly? -- Regards, Peng From gopal.cshl at gmail.com Fri Jun 4 17:51:04 2010 From: gopal.cshl at gmail.com (Gopal) Date: Fri, 4 Jun 2010 13:51:04 -0400 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: Hi Chris, I followed your suggestion and changed the loop into: On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > > > while( my $input = $seqio_obj->next_seq() ) { > > # > > $blast_report = $blast_obj->blastall($input); > > > > push(@reports,$blast_report); > > > > } > > ... > > Yep, you're caching your SearchIO instances here. No need; while( my $input = $seqio_obj->next_seq() ) { $blast_report = $blast_obj->blastall($input); while(my $result=$blast_report->next_result){ Now no objects are cached in arrays. The script worked fine with one genome already and the other is running. thanks for cleaning things up. I will remember to avoid this snag. best, -gopal > if you want to cache you should cache the Result object instead. Something > like > > push(@reports, $blast_report->next_result); > > Probably best to rethink this strategy unless you have absolutely no other > way to deal with your data, if you have lots of BLAST reports you will suck > up memory very quickly. > > > -- > > Gopal Gopinathrao, PhD > > Bioinformaticist / Biologist > > CFSAN, US FDA > > www.patrn.net/patrn > > gopal.gopinathrao at fda.hhs.gov > > P: 301-210-7881 > > > chris -- Gopal Gopinathrao, PhD Bioinformaticist / Biologist CFSAN, US FDA www.patrn.net/patrn gopal.gopinathrao at fda.hhs.gov P: 301-210-7881 From pengyu.ut at gmail.com Fri Jun 4 19:58:09 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 14:58:09 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms Message-ID: Hi, I think that there is a typo in the document of get_replaced_terms. The following is from perldoc Bio::DB::EUtilities. $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? (Note 's'). get_replaced_terms Title : get_replaced_terms Usage : my $term = $eutil->get_replaced_term Function : returns array of strings replaced in the query Returns : string Args : none Notes : only applicable for espell Also, I tried the following code. I'm not sure I got the following error. Would you please let me know what I'm wrong? $ cat ./get_replaced_terms/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; $ ./get_replaced_terms/main.pl Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. get_replaced_terms: -- Regards, Peng From maj at fortinbras.us Fri Jun 4 20:06:55 2010 From: maj at fortinbras.us (Mark A. Jensen) Date: Fri, 4 Jun 2010 16:06:55 -0400 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4F3323F9671041598734EFC85C395925@NewLife> This is a fairly basic perl idiom. $_ is changing with the outer loop containing the print statement, which is probably looping through the accessors for the object represented by $field. ----- Original Message ----- From: "Peng Yu" To: Sent: Friday, June 04, 2010 12:15 PM Subject: [Bioperl-l] The usage of $field->$_ > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From pengyu.ut at gmail.com Fri Jun 4 20:26:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 15:26:53 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: <4F3323F9671041598734EFC85C395925@NewLife> References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: I know this is not a hard question. But I'm still learning perl. I don't see the usage "->$_" in man perlvar. Would you please show me where is the documentation that has detailed discussion on this? On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen wrote: > This is a fairly basic perl idiom. $_ is changing with the outer loop > containing the print statement, which is probably looping through the > accessors for the object represented by $field. > ----- Original Message ----- From: "Peng Yu" > To: > Sent: Friday, June 04, 2010 12:15 PM > Subject: [Bioperl-l] The usage of $field->$_ > > >> In the Eutilities cookbook, >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook >> >> I see the following code, >> >> ? print join(',', grep {$field->$_} qw(is_date >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; >> >> I'm not quite familiar with the usage of $field->$_. I don't see where >> it is covered in man perlvar (I don't the usage of $_ for pattern >> matching, but not in $variable->$). Would you please let me know where >> is the document that explain this usage? >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > -- Regards, Peng From Kevin.M.Brown at asu.edu Fri Jun 4 20:46:36 2010 From: Kevin.M.Brown at asu.edu (Kevin Brown) Date: Fri, 4 Jun 2010 13:46:36 -0700 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: <4F3323F9671041598734EFC85C395925@NewLife> Message-ID: <1A4207F8295607498283FE9E93B775B406C40162@EX02.asurite.ad.asu.edu> That's because you are mixing up two things. -> is an accessor and not part of a variable. $_ is a variable and is in perlvar. And this isn't a list for learning PERL. There are plenty of resources out their for learning general PERL information. Kevin Brown Center for Innovations in Medicine Biodesign Institute Arizona State University > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, June 04, 2010 1:27 PM > To: Mark A. Jensen > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] The usage of $field->$_ > > I know this is not a hard question. But I'm still learning perl. > > I don't see the usage "->$_" in man perlvar. Would you please show me > where is the documentation that has detailed discussion on this? > > On Fri, Jun 4, 2010 at 3:06 PM, Mark A. Jensen > wrote: > > This is a fairly basic perl idiom. $_ is changing with the > outer loop > > containing the print statement, which is probably looping > through the > > accessors for the object represented by $field. > > ----- Original Message ----- From: "Peng Yu" > > To: > > Sent: Friday, June 04, 2010 12:15 PM > > Subject: [Bioperl-l] The usage of $field->$_ > > > > > >> In the Eutilities cookbook, > >> http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > >> > >> I see the following code, > >> > >> ? print join(',', grep {$field->$_} qw(is_date > >> ? ? ? ? ? ? ?is_singletoken is_hierarchy is_hidden > is_numerical)),"\n\n"; > >> > >> I'm not quite familiar with the usage of $field->$_. I > don't see where > >> it is covered in man perlvar (I don't the usage of $_ for pattern > >> matching, but not in $variable->$). Would you please let > me know where > >> is the document that explain this usage? > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > > > > > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From armendarez77 at hotmail.com Fri Jun 4 21:47:39 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Fri, 4 Jun 2010 14:47:39 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 Message-ID: Hello, I'm noticing that Bio::Tools::Run::Primer3 doesn't always give me the same results as the Web Primer3. For example, I provided Bio::Tools::Run::Primer3 the following: Template Sequence: atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg PRIMER_LEFT_INPUT: atgagncttctaaccgagGTcGAAACGTA PRIMER_TASK: pick_left_only I just want to know if the Tm is between 60 and 80C. However, Bio::Tools::Run::Primer3 returns nothing, while Web Primer3 returns a result, as expected: OLIGO start len tm gc% any 3' seq LEFT_PRIMER 1 29 69.11 46.43 4.00 2.00 atgagncttctaaccgagGTcGAAACGTA SEQUENCE SIZE: 225 INCLUDED REGION SIZE: 225 1 atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTC >>>>>>>>>>>>>>>>>>>>>>>>>>>>> 61 AAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAg 121 GCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTn 181 GGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg _________________________________________ Here is a snippet of my code for the above parameters: my $template = "atgagncttctaaccgagGTcGAAACGTAnGttCTnTcTatcnTnCCnTCagGCcCCCTCAAAGCcgAgaTcGCnCAGAgacTnGAanntgTnTTtgCnGGnAAnAanacnGAtCTtGAgGCtcTcaTgGAntGGcTaAAgACAAGaCCAATnnTgTCacCtCtgACtAAgGgnATttTnGGntTtGTgTTcACgCTCACcGTgCCcagtGAgCGaGGaCTGCAg"; my $leftInput = "atgagncttctaaccgagGTcGAAACGTA"; my $templateObj = Bio::PrimarySeq->new(-seq=>$template, -id=>'Template'); my $primer3 = Bio::Tools::Run::Primer3->new(-seq=>$templateObj, -path =>"/usr/bin/primer3_core"); unless ($primer3->executable) {print STDERR "primer3 can not be found. Is it installed?\n"; exit(-1)} $primer3->add_targets('PRIMER_LEFT_INPUT'=>$primerSeq, 'PRIMER_TASK'=>'pick_left_only'); my $results=$primer3->run; my $numberResults = $results->number_of_results(); if($numberResults > 0){ for(my $n=0; $n < $numberResults; $n++){ my $pr = $results->primer_results($n); my $primer = ${$pr}{'PRIMER_LEFT_SEQUENCE'}; my $gc = ${$pr}{'PRIMER_LEFT_GC_PERCENT'}; my $tm = ${$pr}{'PRIMER_LEFT_TM'}; my $selfAny = ${$pr}{'PRIMER_LEFT_SELF_ANY'}; my $selfEnd = ${$pr}{'PRIMER_LEFT_SELF_END'}; my $endStability = ${$pr}{'PRIMER_LEFT_END_STABILITY'}; print "$primer\t$gc\t$tm\t$selfAny\t$selfEnd\t$endStability\n"; } } This seems pretty straightforward, but I don't get any results. Can you see what I am doing wrong? Thank you, Veronica _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From David.Messina at sbc.su.se Fri Jun 4 22:31:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:31:50 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: On Jun 4, 2010, at 9:58 PM, Peng Yu wrote: > I think that there is a typo in the document of get_replaced_terms. Fixed, thanks. Dave From David.Messina at sbc.su.se Fri Jun 4 22:47:36 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 00:47:36 +0200 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: References: Message-ID: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Hi Jessica, > Does any one know if there is any existing function of bioperl that can > locate and highlighted short stretch of nt sequences within long genomic sequences ? I don't think there is an out-of-the-box BioPerl solution for this. You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. A simply way, requiring no special code, would be to change the case of the letters: agctagcatgcatgcAGACTGATCATCagctagctac Or use HTML: agctagcatgcatgcAGACTGATCATCagctagctac For some more sophisticated options, take a look at Bio::Graphics: http://search.cpan.org/perldoc?Bio::Graphics Dave From David.Messina at sbc.su.se Fri Jun 4 23:06:06 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:06:06 +0200 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > It seems that term_count is not available for einfo. The method is actually get_term_count, not term_count. Thanks for catching that (now fixed). Dave From David.Messina at sbc.su.se Fri Jun 4 23:21:41 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 01:21:41 +0200 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <575B0EED-748C-40AE-A0C2-4EE94E0315A1@sbc.su.se> > I'm not sure what get_db() is but I only see get_db. > Is get_db the same as get_db()? Yes. Think about how you call most functions. They take arguments in parentheses after their name. Such as: my $string = join("\t", @array); "\t" and @array are arguments to the join function. Or: my $lowercase_string = lc("MY UPPERCASE STRING"); "MY UPPERCASE STRING" is an argument to the lc function. So in Perl we often write join() or lc() to indicate that join() and lc() are functions. > If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. >From looking at the code, I think you're right. get_db() and get_dbto() are aliases for get_database(), all of which refer to the queried database. But get_dbfrom() gives you the referring database, that is the database linked from (as pointed out in the synopsis. Fixed this. Dave From David.Messina at sbc.su.se Sat Jun 5 00:10:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:10:20 +0200 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Please be sure to "reply all" so that this conversation stays on the mailing list. > Could you also take a look at the question in the original email? Thank you! Oops, missed that. > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: I think you might have pasted two different examples together. From http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#espell the correct method to call when using espell is get_corrected_query: print "Did you mean \"",$factory->get_corrected_query, "\"?\n"; instead of the get_replaced_terms one. Dave From David.Messina at sbc.su.se Sat Jun 5 00:16:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sat, 5 Jun 2010 02:16:57 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: Message-ID: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Hi Veronica, Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? Dave From pengyu.ut at gmail.com Sat Jun 5 00:46:53 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Fri, 4 Jun 2010 19:46:53 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Fri, Jun 4, 2010 at 7:10 PM, Dave Messina wrote: > Please be sure to "reply all" so that this conversation stays on the mailing list. > >> Could you also take a look at the question in the original email? Thank you! > > > Oops, missed that. > >> Also, I tried the following code. I'm not sure I got the following >> error. Would you please let me know what I'm wrong? >> >> $ cat ./get_replaced_terms/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::DB::EUtilities; >> >> my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', >> ? ? ? ? ? ? ? ? ? ? ? ? -term => 'brest cnacer', >> ? ? ? ? ? ? ? ? ? ? ? ? -email => 'mymail at foo.bar' >> ? ? ? ? ? ? ? ? ? ? ? ); >> >> print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; >> >> $ ?./get_replaced_terms/main.pl >> Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. >> get_replaced_terms: > > > I think you might have pasted two different examples together. No. I want to try get_replaced_terms instead of get_corrected_query. Could you give me an example in which get_replaced_terms is used? -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 10:51:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:20 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: References: Message-ID: Most of these methods have changed to get_* methods (nothing is settable). I'll go through and check them for consistency, just to make sure. chris On Jun 4, 2010, at 11:33 AM, Peng Yu wrote: > Hi, > > It seems that term_count is not available for einfo. > > > $ ./main.pl > Can't locate object method "term_count" via package > "Bio::Tools::EUtilities::Info::FieldInfo" at ./main.pl line 13. > $ vim ./main.pl > pengy at pengy-desktop:/pearson/data/pengy/test/perl/library/Bio/Tools/EUtilities/Info/FieldInfo/term_count$ > cat ./main.pl > > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'einfo', > -email => 'mymail at foo.bar', > -db => 'pubmed'); > > while (my $field = $factory->next_FieldInfo) { > print "term_count: ",$field->term_count,"\n"; > } > > > But the man page 'perldoc Bio::Tools::EUtilities::Info::FieldInfo' > doesn't say so. Could you let me know where to find which methods are > available for which eutilities? > > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 10:51:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:51:30 -0500 Subject: [Bioperl-l] The usage of $field->$_ In-Reply-To: References: Message-ID: <4A770918-B0F3-4BD8-9DAC-2B7BD2CCF4F3@illinois.edu> $_ is the value being iterated through in a grep of a list of values. This is just using that list as methods (like $field->is_date, but for each method), testing the return value as defined, and if so adding to the list for the join. chris On Jun 4, 2010, at 11:15 AM, Peng Yu wrote: > In the Eutilities cookbook, > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > I see the following code, > > print join(',', grep {$field->$_} qw(is_date > is_singletoken is_hierarchy is_hidden is_numerical)),"\n\n"; > > I'm not quite familiar with the usage of $field->$_. I don't see where > it is covered in man perlvar (I don't the usage of $_ for pattern > matching, but not in $variable->$). Would you please let me know where > is the document that explain this usage? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 10:55:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:55:17 -0500 Subject: [Bioperl-l] get_dbfrom document In-Reply-To: References: Message-ID: <44C403BF-1C78-4793-ACD5-BA6A18D6A153@illinois.edu> That's incorrect; get_dbfrom for elink is the originating database; get_db should always be the database that is queried (for elink this is dbto). Will look into it. chris On Jun 4, 2010, at 11:57 AM, Peng Yu wrote: > According to perldoc Bio::Tools::EUtilities::Info::LinkInfo, > get_dbfrom is alias for get_db(). > > get_dbfrom > Title : get_dbfrom > Usage : my $origdb = $link->get_dbfrom; > Function : returns referring database > Returns : string > Args : none > Note : alias for get_db() > > I'm not sure what get_db() is but I only see get_db. Is get_db the > same as get_db()? If this is true, then get_dbfrom is not an alias for > get_db, because I get different result for the two variables. > > Am I understanding it correctly? > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 10:56:49 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 05:56:49 -0500 Subject: [Bioperl-l] tempfile problem with standalone blast In-Reply-To: References: <755B7C25-5BB4-436C-81B6-48DDC078F1F9@illinois.edu> Message-ID: <4EA71510-CF81-4D93-921A-F479309281E4@illinois.edu> We do have the cleanup() method if caching, but in practice I've found that caching is very rarely ever needed. chris On Jun 4, 2010, at 12:51 PM, Gopal wrote: > Hi Chris, > > I followed your suggestion and changed the loop into: > > On Fri, Jun 4, 2010 at 12:44 PM, Chris Fields wrote: > >> >>> while( my $input = $seqio_obj->next_seq() ) { >>> # >>> $blast_report = $blast_obj->blastall($input); >>> >>> push(@reports,$blast_report); >>> >>> } >>> ... >> >> Yep, you're caching your SearchIO instances here. No need; > > > > > while( my $input = $seqio_obj->next_seq() ) { > $blast_report = $blast_obj->blastall($input); > > > while(my $result=$blast_report->next_result){ > > Now no objects are cached in arrays. The script worked fine with one genome > already and the other is running. > thanks for cleaning things up. I will remember to avoid this snag. > > best, > > -gopal > > > > > > > > > > > > >> if you want to cache you should cache the Result object instead. Something >> like >> >> push(@reports, $blast_report->next_result); >> >> Probably best to rethink this strategy unless you have absolutely no other >> way to deal with your data, if you have lots of BLAST reports you will suck >> up memory very quickly. >> >>> -- >>> Gopal Gopinathrao, PhD >>> Bioinformaticist / Biologist >>> CFSAN, US FDA >>> www.patrn.net/patrn >>> gopal.gopinathrao at fda.hhs.gov >>> P: 301-210-7881 >> >> >> chris > > > > > -- > Gopal Gopinathrao, PhD > Bioinformaticist / Biologist > CFSAN, US FDA > www.patrn.net/patrn > gopal.gopinathrao at fda.hhs.gov > P: 301-210-7881 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 12:34:34 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:34:34 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se> Message-ID: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. chris On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > Hi Veronica, > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > Dave > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 12:36:18 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:36:18 -0500 Subject: [Bioperl-l] Highlighted short sequences In-Reply-To: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> References: <9E2D1EF2-3C1C-497E-BF78-4691683E0048@sbc.su.se> Message-ID: On Jun 4, 2010, at 5:47 PM, Dave Messina wrote: > Hi Jessica, > > >> Does any one know if there is any existing function of bioperl that can >> locate and highlighted short stretch of nt sequences within long genomic sequences ? > > > I don't think there is an out-of-the-box BioPerl solution for this. > > You're presenting a two-step problem: 1) locate the short stretch 2) highlight it. > > For the 'locate' part, that usually means a similarity search with BLAST, BLAT, or something along those lines. There are parts of BioPerl to help run those searches and parse their results. > > See http://www.bioperl.org/wiki/HOWTO:Beginners for an introduction. > > Once you've found the coordinates of the match, then there are lots of ways you could conceivably highlight the matches. > > A simply way, requiring no special code, would be to change the case of the letters: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > Or use HTML: > > agctagcatgcatgcAGACTGATCATCagctagctac > > > For some more sophisticated options, take a look at Bio::Graphics: > > http://search.cpan.org/perldoc?Bio::Graphics > > > Dave GBrowse (via Bio::Graphics) does highlighting for text searches, so you could probably dig out the code used for that as a start. chris From cjfields at illinois.edu Sat Jun 5 12:37:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:37:26 -0500 Subject: [Bioperl-l] Is term_count available for einfo (EUtilities)? In-Reply-To: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> References: <1E476D2D-A0C1-4062-ACE0-78150A9014EE@sbc.su.se> Message-ID: <6C1D172A-B59A-4EE8-90E4-FC693CC031DB@illinois.edu> On Jun 4, 2010, at 6:06 PM, Dave Messina wrote: > > On Jun 4, 2010, at 6:33 PM, Peng Yu wrote: > >> It seems that term_count is not available for einfo. > > The method is actually get_term_count, not term_count. > > Thanks for catching that (now fixed). > > > Dave Thanks for the doc fixes dave. I'll go through and see if there are any more. Peng, let me know if you run into anything else (or you can submit them to bugzilla if needed). chris From cjfields at illinois.edu Sat Jun 5 12:40:29 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 07:40:29 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: <07BAE325-48DD-4A19-82F6-D0FC9CC34939@sbc.su.se> Message-ID: On Jun 4, 2010, at 7:46 PM, Peng Yu wrote: >> I think you might have pasted two different examples together. > > No. I want to try get_replaced_terms instead of get_corrected_query. > Could you give me an example in which get_replaced_terms is used? > > -- > Regards, > Peng Peng, This is just a value that NCBI returns, indicating which terms have been replaced in a query. chris From cjfields at illinois.edu Sat Jun 5 13:20:19 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:20:19 -0500 Subject: [Bioperl-l] Leftover SVN tags Message-ID: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... chris From cjfields at illinois.edu Sat Jun 5 13:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 08:35:51 -0500 Subject: [Bioperl-l] typo in perldoc of get_replaced_terms In-Reply-To: References: Message-ID: <6B14D526-D9F8-416B-8B7A-273817892C7A@illinois.edu> On Jun 4, 2010, at 2:58 PM, Peng Yu wrote: > Hi, > > I think that there is a typo in the document of get_replaced_terms. > The following is from perldoc Bio::DB::EUtilities. > $eutil->get_replaced_term should be $eutil->get_replaced_terms, right? > (Note 's'). > > > get_replaced_terms > Title : get_replaced_terms > Usage : my $term = $eutil->get_replaced_term > Function : returns array of strings replaced in the query > Returns : string > Args : none > Notes : only applicable for espell > > > Also, I tried the following code. I'm not sure I got the following > error. Would you please let me know what I'm wrong? > > $ cat ./get_replaced_terms/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', > -term => 'brest cnacer', > -email => 'mymail at foo.bar' > ); > > print "get_replaced_terms: ",$factory->get_replaced_terms,"\n"; > > $ ./get_replaced_terms/main.pl > Use of uninitialized value in print at ./get_replaced_terms/main.pl line 13. > get_replaced_terms: > > > -- > Regards, > Peng There were no replaced terms returned, you can see this in the raw XML (see below). So the method doesn't return anything, hence the warning. You can get around this if you do something like: print "get_replaced_terms: ".($factory->get_replaced_terms || '')."\n"; chris pyrimidine1:email cjfields$ cat espell.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'espell', -term => 'brest cnacer', -email => 'mymail at foo.bar' ); print $factory->get_Response->content."\n"; pyrimidine1:email cjfields$ perl espell.pl pubmed brest cnacer breast cancer chris From hlapp at drycafe.net Sat Jun 5 14:50:23 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 5 Jun 2010 10:50:23 -0400 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> Message-ID: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. -hilmar On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > Looks like we have $Id$ tags left over from SVN. The question is, > so we want to keep these in and have them expanded via > gitattributes? Personally having the SHA in there seems kinda > pointless.... > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sat Jun 5 15:12:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 10:12:26 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> Message-ID: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> That was the only reason I could think of, but truthfully I generally have the user indicate which $Bio::Root::Root::VERSION and/or 'perldoc -l Bio::Root::Root' (the latter which gives the location of the bioperl install). chris On Jun 5, 2010, at 9:50 AM, Hilmar Lapp wrote: > It used to be nice to be able to easily determine which module was being used in a situation of multiple versions of BioPerl installed. > > But maybe that can be better achieved through other means, or maybe it's not an important use case anymore except for the core developers - not sure. > > -hilmar > > On Jun 5, 2010, at 9:20 AM, Chris Fields wrote: > >> Looks like we have $Id$ tags left over from SVN. The question is, so we want to keep these in and have them expanded via gitattributes? Personally having the SHA in there seems kinda pointless.... >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Sat Jun 5 15:44:43 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 10:44:43 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) Message-ID: The following problem generate exceptions, because certain parameters are not passed to reset_parameters. However, I think that it is reasonable to avoid setting any parameters that have already been set using new(). If my understand is correct, I'd suggest that reset_parameters should only take parameters that need to be reset but not to take parameters that don't have be reset. #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'protein', -term => 'BRCA1 AND human', -email => 'mymail at foo.bar', ); print "get_retmax(): ",$factory->get_retmax(),"\n"; my $count=$factory->get_count; print "count: ",$count,"\n"; $factory->reset_parameters(-eutil => 'esearch', # -db => 'protein', # -term => 'BRCA1 AND human', # -email => 'mymail at foo.bar', -retmax => $count ); print "get_retmax(): ",$factory->get_retmax(),"\n"; -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 20:09:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 15:09:37 -0500 Subject: [Bioperl-l] not specifying some parameters to reset_parameters (Bio::DB::EUtilities) In-Reply-To: References: Message-ID: <00436010-A1D5-441F-91A7-591E7E7D4F79@illinois.edu> On Jun 5, 2010, at 10:44 AM, Peng Yu wrote: > The following problem generate exceptions, because certain parameters > are not passed to reset_parameters. However, I think that it is > reasonable to avoid setting any parameters that have already been set > using new(). If my understand is correct, I'd suggest that > reset_parameters should only take parameters that need to be reset but > not to take parameters that don't have be reset. You need to use set_parameters() to carry over parameters to subsequent searches. Just as the name of the method implies, reset_parameters() resets pretty much everything, then sets what you pass, and is necessary between certain steps to ensure you aren't carrying over parameters that cause problems when switching eutils if using the same instance (this used to be a problem with elink in particular). I may add an exception for email and tool parameters as a convenience for the obvious reasons. However, changing the below to set_parameters() works for me. > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'protein', > -term => 'BRCA1 AND human', > -email => 'mymail at foo.bar', > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > my $count=$factory->get_count; > print "count: ",$count,"\n"; > > $factory->reset_parameters(-eutil => 'esearch', > # -db => 'protein', > # -term => 'BRCA1 AND human', > # -email => 'mymail at foo.bar', > -retmax => $count > ); > > print "get_retmax(): ",$factory->get_retmax(),"\n"; > > > -- > Regards, > Peng chris From pengyu.ut at gmail.com Sat Jun 5 21:28:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 16:28:18 -0500 Subject: [Bioperl-l] bioperl support for running blast locally Message-ID: There is a module to run blast remotely Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and I think that it makes more sense for me to run blast locally. Is there a way to let bioperl parse the output from my local command line blast? -- Regards, Peng From florent.angly at gmail.com Sat Jun 5 22:55:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Sun, 06 Jun 2010 08:55:56 +1000 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: Message-ID: <4C0AD5FC.1070907@gmail.com> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / BlastPlus.pm Then to parse the results, you can read this: http://www.bioperl.org/wiki/HOWTO:SearchIO Florent On 06/06/2010 07:28 AM, Peng Yu wrote: > There is a module to run blast remotely > Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and > I think that it makes more sense for me to run blast locally. Is there > a way to let bioperl parse the output from my local command line > blast? > > From pengyu.ut at gmail.com Sat Jun 5 23:16:40 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:16:40 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0AD5FC.1070907@gmail.com> References: <4C0AD5FC.1070907@gmail.com> Message-ID: It seems that StandAloneBlastPlus is a higher level wrapper than BlastPlus. Is it better to use StandAloneBlastPlus? Essentially, what I need is to compare pairs of sequences. Note that I want to use the bash Process substitution to avoid generating temp files. Does StandAloneBlastPlus support this? If yes, would you please how me what command to use? blastn -query <(echo GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) -subject <(echo CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: > To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ > BlastPlus.pm > Then to parse the results, you can read this: > http://www.bioperl.org/wiki/HOWTO:SearchIO > Florent > > On 06/06/2010 07:28 AM, Peng Yu wrote: >> >> There is a module to run blast remotely >> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >> I think that it makes more sense for me to run blast locally. Is there >> a way to let bioperl parse the output from my local command line >> blast? >> >> > > -- Regards, Peng From pengyu.ut at gmail.com Sat Jun 5 23:19:06 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sat, 5 Jun 2010 18:19:06 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? Message-ID: http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus The following cpan link shown in the above page is not working. Could you let me know where to download the module? http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus -- Regards, Peng From cjfields at illinois.edu Sat Jun 5 23:57:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:57:56 -0500 Subject: [Bioperl-l] Where to download Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, Re: StandAloneBlastPlus, is this not covered in it's HOWTO? http://www.bioperl.org/wiki/HOWTO:BlastPlus As for CPAN doc links, the wiki page links are autogenerated via a template; unfortunately the BlastPlus code hasn't been added to CPAN yet (hence the broken link). There is a tentative plan to push through a 1.6.2 very soon, which should include this. chris On Jun 5, 2010, at 6:19 PM, Peng Yu wrote: > http://www.bioperl.org/wiki/Module:Bio::Tools::Run::StandAloneBlastPlus > > The following cpan link shown in the above page is not working. Could > you let me know where to download the module? > > http://search.cpan.org/perldoc?Bio::Tools::Run::StandAloneBlastPlus > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sat Jun 5 23:59:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 18:59:41 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> Message-ID: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). For the rest, please see the associated documentation and the HOWTO: http://www.bioperl.org/wiki/HOWTO:BlastPlus chris On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > It seems that StandAloneBlastPlus is a higher level wrapper than > BlastPlus. Is it better to use StandAloneBlastPlus? > > Essentially, what I need is to compare pairs of sequences. Note that I > want to use the bash Process substitution to avoid generating temp > files. Does StandAloneBlastPlus support this? If yes, would you please > how me what command to use? > > blastn -query <(echo > GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) > -subject <(echo > CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) > > > On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >> BlastPlus.pm >> Then to parse the results, you can read this: >> http://www.bioperl.org/wiki/HOWTO:SearchIO >> Florent >> >> On 06/06/2010 07:28 AM, Peng Yu wrote: >>> >>> There is a module to run blast remotely >>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>> I think that it makes more sense for me to run blast locally. Is there >>> a way to let bioperl parse the output from my local command line >>> blast? >>> >>> >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 02:38:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 21:38:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch Message-ID: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: Bio::Tools::Match Bio::Tools::Phylo::Gerp Bio::Tools::Phylo::Gumby As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. chris From cjfields at illinois.edu Sun Jun 6 03:40:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 5 Jun 2010 22:40:54 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Annotated migration branch In-Reply-To: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> References: <562BB6AA-A8B0-4765-B910-D5CD0E18012B@illinois.edu> Message-ID: <3F0840D3-F8CF-4503-99DF-2A550788C9DE@illinois.edu> After removal and some changes for API consistency, all tests pass on the branch, so it's ready to merge. chris On Jun 5, 2010, at 9:38 PM, Chris Fields wrote: > As Bio::SeqFeature::Annotated is a bit heavy, has some problems, and seems mainly centralized around Bio::FeatureIO, I'm planning on eventually moving it completely over to the Bio-FeatureIO refactoring (in a separate dist). It may eventually be removed altogether in the long term. > > However, there are a few modules outside of Bio::FeatureIO in core that seem to be using this class for unknown reasons: > > Bio::Tools::Match > Bio::Tools::Phylo::Gerp > Bio::Tools::Phylo::Gumby > > As it's long been considered too heavy and will be deprecated in favor of something more lightweight, I'll try moving these over to either SF::Generic or to a factory for flexibility. I've created a branch on bioperl-live to do this: > > http://github.com/bioperl/bioperl-live/tree/topic/switch_sf_annotated > > If anyone knows why the above modules might absolutely require this please let me know. I'll not merge anything over until we do a final review on list. > > chris > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 12:04:22 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 14:04:22 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> Message-ID: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository?" If there is, I'm fine with dropping the in-file $Id$ rev/author/datestamp information. (Seems like that's the Way of Git, anyway). If not, though, I'm kinda inclined to keep some sort of author and datestamp in each file. I am prepared to be convinced otherwise, though. I've done a little reading on this issue, but I don't fully understand the arguments against. Dave From pengyu.ut at gmail.com Sun Jun 6 13:01:14 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 08:01:14 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run Message-ID: I downloaded bioperl-live and bioperl-run by svn. bioperl-live is installed correctly. $ echo $PERL5LIB $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Perl; print Bio::Perl->VERSION, "\n"; $ ./main.pl 1.0069 However, bioperl-run seems can be compiled but can not be installed. bioperl-run$ ./Build install Building BioPerl-Run I'm wondering how to fix the problem. -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 13:16:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:16:51 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <7120F98E-43B2-4E71-9838-F41F06D9C668@illinois.edu> Peng, Are you installing this locally? I never recommend installing the various in-development bioperl distributions system-wide unless you absolutely need them for some particular reason; it's better to keep them local if possible. chris On Jun 6, 2010, at 8:01 AM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. bioperl-live is > installed correctly. > > $ echo $PERL5LIB > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Perl; > > print Bio::Perl->VERSION, "\n"; > > $ ./main.pl > 1.0069 > > However, bioperl-run seems can be compiled but can not be installed. > > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 13:28:23 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:28:23 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: Message-ID: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > I downloaded bioperl-live and bioperl-run by svn. By svn from Github? > bioperl-run$ ./Build install > Building BioPerl-Run > > I'm wondering how to fix the problem. We'll need more information to figure out what the problem is. Can you post the whole transcript of your failed install? Dave From cjfields at illinois.edu Sun Jun 6 13:44:35 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 08:44:35 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> On Jun 6, 2010, at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? There is read support for using svn and github. Also experimental write support. http://github.com/blog/626-announcing-svn-support http://github.com/blog/644-subversion-write-support >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? > > > Dave Agreed. Would be more informative. chris From David.Messina at sbc.su.se Sun Jun 6 13:47:39 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 15:47:39 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <3E67D85D-F023-44ED-8407-865CE8704A1B@illinois.edu> Message-ID: <10FD26AE-C8BD-4717-8548-7CE3548709EA@sbc.su.se> >>> I downloaded bioperl-live and bioperl-run by svn. >> >> By svn from Github? > > There is read support for using svn and github. Also experimental write support. > > http://github.com/blog/626-announcing-svn-support > http://github.com/blog/644-subversion-write-support Right. Sorry, didn't mean to imply it wasn't possible to get it from Github via svn. I was intending to confirm that he was indeed getting the latest version. (Although, now that I think about it, these day there isn't anyhere else that it's possible to get BioPerl via svn other than Github.) Dave From David.Messina at sbc.su.se Sun Jun 6 14:16:20 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 16:16:20 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> > My perl is installed in a directory in my home. I think that bioperl > will be installed in the directory in the perl directory in my home, > right? Hmm, I think you still have to tell Build that you want it to install in your private directory. Have you read http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA ? > BTW, the following web address better be changed to 'Using_git". > http://www.bioperl.org/wiki/Using_Subversion Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? >> Can you post the whole transcript of your failed install? > > I assume that you are asking the Build script. Please see the > attachment. Let me know if you mean something else. No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Dave From pengyu.ut at gmail.com Sun Jun 6 15:15:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 10:15:24 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >> My perl is installed in a directory in my home. I think that bioperl >> will be installed in the directory in the perl directory in my home, >> right? > > Hmm, I think you still have to tell Build that you want it to install in your private directory. > > Have you read > > http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA I actually read the description. But I don't understand why it is the case. When I download other packages from CPAN. I don't need to specify anything. They get automatically installed in a directory (I think it is site_perl?) in my local perl installation directory. Why I have to explicitly say where bioperl should be installed ? > ? > > >> BTW, the following web address better be changed to 'Using_git". >> http://www.bioperl.org/wiki/Using_Subversion > > Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. > > Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? Please see the following webpage.Search for "Using Subversion". http://www.bioperl.org/wiki/HOWTO:BlastPlus >>> Can you post the whole transcript of your failed install? >> >> I assume that you are asking the Build script. Please see the >> attachment. Let me know if you mean something else. > > No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? Once, I saw some installing command after "Building BioPerl-Run" when I run '.Build install". But I can not reproduce it any more. I delete the download and run the installation process again. But it still doesn't seem to work. $ git clone git://github.com/bioperl/bioperl-run.git Initialized empty Git repository in /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ remote: Counting objects: 11230, done. remote: Compressing objects: 100% (2502/2502), done. remote: Total 11230 (delta 7360), reused 11184 (delta 7322) Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. Resolving deltas: 100% (7360/7360), done. Checking out files: 100% (379/379), done. $ perl Build.PLInstall scripts? y/n [n ] n Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ] n - will not run internet-requiring tests Creating new 'MYMETA.yml' with configuration results Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Creating new 'Build' script for 'BioPerl-Run' version '1.006900' $ ./Build manifest File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' Added to MANIFEST: AUTHORS Added to MANIFEST: Build.PL Added to MANIFEST: Changes Added to MANIFEST: DEPENDENCIES Added to MANIFEST: INSTALL ..... Added to MANIFEST: t/TCoffee.t Added to MANIFEST: t/TigrAssembler.t Added to MANIFEST: t/Tmhmm.t Added to MANIFEST: t/TribeMCL.t Added to MANIFEST: t/tRNAscanSE.t Added to MANIFEST: t/Vista.t $ ./Build install Building BioPerl-Run $ -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 16:25:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 11:25:59 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <413AB412-CE27-4091-9E94-D9A345F59AF3@illinois.edu> On Jun 6, 2010, at 10:15 AM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 9:16 AM, Dave Messina wrote: >>> My perl is installed in a directory in my home. I think that bioperl >>> will be installed in the directory in the perl directory in my home, >>> right? >> >> Hmm, I think you still have to tell Build that you want it to install in your private directory. >> >> Have you read >> >> http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix#INSTALLING_BIOPERL_IN_A_PERSONAL_MODULE_AREA > > I actually read the description. But I don't understand why it is the case. > > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? That's not the point. You are not installing code from CPAN; you are installing code in development from our git/github repository. We can't always guarantee that it would pass tests, as the CPAN release does, nor should we need to. I know there is a need to install the latest and greatest bleeding-edge code, but there is a reason it's called 'bleeding edge'. It may not always pass tests, so installing it system-wide is definitely not recommended. I would go as far as saying that installing it locally is probably also not a good idea unless you know what you are doing. >> ? >> >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to point to Using_git. May I ask where did you see ? that is, how did you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Looks like that was corrected to point to the proper location. I just want to point out something: we've now been on git/github for just over a month now. It's very possible there are links on the wiki that point to the older page. It's also possible to simply edit said pages to point to the proper page; it is a wiki, after all. If you see a link to the wrong page, feel free to edit it after logging in (anyone can get an account). >>>> Can you post the whole transcript of your failed install? >>> >>> I assume that you are asking the Build script. Please see the >>> attachment. Let me know if you mean something else. >> >> No, I mean could you copy and paste the command line text showing the commands you ran (starting with 'perl Build.PL' and up to and including './Build install'), and including the output from running those commands? > > Once, I saw some installing command after "Building BioPerl-Run" when > I run '.Build install". But I can not reproduce it any more. > > I delete the download and run the installation process again. But it > still doesn't seem to work. > > $ git clone git://github.com/bioperl/bioperl-run.git > Initialized empty Git repository in > /pearson/data/pengy/download/bioperl_svn/bioperl-run/.git/ > remote: Counting objects: 11230, done. > remote: Compressing objects: 100% (2502/2502), done. > remote: Total 11230 (delta 7360), reused 11184 (delta 7322) > Receiving objects: 100% (11230/11230), 25.84 MiB | 18.20 MiB/s, done. > Resolving deltas: 100% (7360/7360), done. > Checking out files: 100% (379/379), done. > > $ perl Build.PLInstall scripts? y/n [n ] > n > Do you want to run tests that require connection to servers across the internet > (likely to cause some failures)? y/n [n ] > n > - will not run internet-requiring tests > Creating new 'MYMETA.yml' with configuration results > Can't find dist packages without a MANIFEST file > Run 'Build manifest' to generate one > > WARNING: Possible missing or corrupt 'MANIFEST' file. > Nothing to enter for 'provides' field in metafile. > Creating new 'Build' script for 'BioPerl-Run' version '1.006900' > > $ ./Build manifest > File 'MANIFEST.SKIP' does not exist: Creating a temporary 'MANIFEST.SKIP' > Added to MANIFEST: AUTHORS > Added to MANIFEST: Build.PL > Added to MANIFEST: Changes > Added to MANIFEST: DEPENDENCIES > Added to MANIFEST: INSTALL > ..... > Added to MANIFEST: t/TCoffee.t > Added to MANIFEST: t/TigrAssembler.t > Added to MANIFEST: t/Tmhmm.t > Added to MANIFEST: t/TribeMCL.t > Added to MANIFEST: t/tRNAscanSE.t > Added to MANIFEST: t/Vista.t > > $ ./Build install > Building BioPerl-Run > $ > > -- > Regards, > Peng I added a default MANIFEST, just in case. However, this shouldn't prevent installation, it just builds one for packaging up the distribution for CPAN. This does install on my machine locally (see below). If you reinstall (also demonstrated below) you won't see any install messages b/c no modules have changed from the build process. So, maybe it already installed successfully, and you haven't set the include path correctly so it isn't showing up? Make sure you are setting PERL5LIB or your 'use lib' directive to point to the proper location; in the below, that would be '/Users/cjfields/local/lib/perl5'. chris pyrimidine1:bioperl-run cjfields$ perl Build.PL --install-base ~/local/ Install scripts? y/n [n ]y Do you want to run tests that require connection to servers across the internet (likely to cause some failures)? y/n [n ]y - will run internet-requiring tests Do you want to run tests requiring a valid email address? y/n [n ]y Enter email address: cjfields at bioperl.org Creating new 'MYMETA.yml' with configuration results Creating new 'Build' script for 'BioPerl-Run' version '1.006900' pyrimidine1:bioperl-run cjfields$ ./Build Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run Installing /Users/cjfields/local/man/man1/bp_bioperl_application_installer.pl.1 Installing /Users/cjfields/local/man/man1/bp_multi_hmmsearch.pl.1 Installing /Users/cjfields/local/man/man1/bp_panalysis.pl.1 Installing /Users/cjfields/local/man/man1/bp_papplmaker.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_neighbor.pl.1 Installing /Users/cjfields/local/man/man1/bp_run_protdist.pl.1 Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/SoapEUtilities.pm Installing /Users/cjfields/local/lib/perl5/Bio/DB/ESoap/WSDL.pm .... Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::tRNAscanSE.3 Installing /Users/cjfields/local/man/man3/Bio::Tools::Run::Vista.3 Installing /Users/cjfields/local/bin/bp_bioperl_application_installer.pl Installing /Users/cjfields/local/bin/bp_multi_hmmsearch.pl Installing /Users/cjfields/local/bin/bp_panalysis.pl Installing /Users/cjfields/local/bin/bp_papplmaker.pl Installing /Users/cjfields/local/bin/bp_run_neighbor.pl Installing /Users/cjfields/local/bin/bp_run_protdist.pl pyrimidine1:bioperl-run cjfields$ ./Build install Building BioPerl-Run pyrimidine1:bioperl-run cjfields$ cd pyrimidine1:~ cjfields$ perldoc -l Bio::Tools::Run::StandAloneBlastPlus /Users/cjfields/local/lib/perl5/Bio/Tools/Run/StandAloneBlastPlus.pm From David.Messina at sbc.su.se Sun Jun 6 16:26:04 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 18:26:04 +0200 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> <52758ABD-70D2-4CFB-B9F4-FF3E503A368D@sbc.su.se> Message-ID: <594C1A8B-D33D-43FA-9B47-53B59F2D481C@sbc.su.se> On Jun 6, 2010, at 17:15, Peng Yu wrote: > When I download other packages from CPAN. I don't need to specify > anything. They get automatically installed in a directory (I think it > is site_perl?) in my local perl installation directory. Why I have to > explicitly say where bioperl should be installed ? Ah okay, I misunderstood. If it works for other CPAN installs, it should work for BioPerl. >> >>> BTW, the following web address better be changed to 'Using_git". >>> http://www.bioperl.org/wiki/Using_Subversion >> >> Actually, the page is Using_git, but we're redirecting >> Using_Subversion to it; that's why it looks like URL is wrong. >> >> Also, I think we tried to change all of the links on the website to >> point to Using_git. May I ask where did you see ? that is, how did >> you come to ? the link to Using_subversion? > > Please see the following webpage.Search for "Using Subversion". > > http://www.bioperl.org/wiki/HOWTO:BlastPlus Thanks. > I delete the download and run the installation process again. But it > still doesn't seem to work. I'll take a look at this later. In the meantime, you can certainly do as Chris recommended earlier and not 'install' and just add bioperl-run/lib to your PERL5LIB. As he said, that's better anyway, since you can keep up-to-date with the latest bug fixes and changes by simply doing 'git pull'. Dave From David.Messina at sbc.su.se Sun Jun 6 18:29:45 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 20:29:45 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? > > We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? To anwer my own question, yes: http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob I copied the Perl script to here: http://gist.github.com/427769 If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. Dave From pengyu.ut at gmail.com Sun Jun 6 19:11:24 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 14:11:24 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: I don't see how StandAloneBlastPlus can help extract all the information I need. For example, I need to know the starts and the ends of the pair of sequences that match (1 and 33, and 1 and 33 in the following example). How many gaps and mismatches there are (no gaps and no mismatches in the following example)? The strand information. Would you please let me know if these are possible with StandAloneBlastPlus from git? $ blastn -query <(echo CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) -subject <(echo ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) > HWI-EAS11X_10097_4_1_1909_9532.txt $ cat HWI-EAS11X_10097_4_1_1909_9532.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 Score = 62.1 bits (33), Expect = 1e-15 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Minus Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 ||||||||||||||||||||||||||||||||| Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: > StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). ?StandAloneBlast is the C-based legacy BLAST (they have different parameters). > > For the rest, please see the associated documentation and the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:BlastPlus > > chris > > On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: > >> It seems that StandAloneBlastPlus is a higher level wrapper than >> BlastPlus. Is it better to use StandAloneBlastPlus? >> >> Essentially, what I need is to compare pairs of sequences. Note that I >> want to use the bash Process substitution to avoid generating temp >> files. Does StandAloneBlastPlus support this? If yes, would you please >> how me what command to use? >> >> blastn -query <(echo >> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >> -subject <(echo >> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >> >> >> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>> To run BLAST locally, see ?bioperl-run ?/ lib ?/ Bio ?/ Tools ?/ Run ?/ >>> BlastPlus.pm >>> Then to parse the results, you can read this: >>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>> Florent >>> >>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>> >>>> There is a module to run blast remotely >>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>> I think that it makes more sense for me to run blast locally. Is there >>>> a way to let bioperl parse the output from my local command line >>>> blast? >>>> >>>> >>> >>> >> >> >> >> -- >> Regards, >> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From cjfields at illinois.edu Sun Jun 6 19:26:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 14:26:05 -0500 Subject: [Bioperl-l] bioperl support for running blast locally In-Reply-To: References: <4C0AD5FC.1070907@gmail.com> <4C0FCB81-15E1-4DD6-9DD9-903B7505C971@illinois.edu> Message-ID: According to the SYNPOSIS and the HOWTO, the factory returns a $result object, which I assume is derived from Bio::SearchIO parsing. For more information on that see that relevant HOWTO, which gives some illustrative examples. http://www.bioperl.org/wiki/HOWTO:SearchIO chris On Jun 6, 2010, at 2:11 PM, Peng Yu wrote: > I don't see how StandAloneBlastPlus can help extract all the > information I need. For example, I need to know the starts and the > ends of the pair of sequences that match (1 and 33, and 1 and 33 in > the following example). How many gaps and mismatches there are (no > gaps and no mismatches in the following example)? The strand > information. > > Would you please let me know if these are possible with > StandAloneBlastPlus from git? > > $ blastn -query <(echo > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC) > -subject <(echo > ATCGCCTGCACCATGCTTAGAGTCATCCCCGCGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGG) >> HWI-EAS11X_10097_4_1_1909_9532.txt > $ cat HWI-EAS11X_10097_4_1_1909_9532.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > Score = 62.1 bits (33), Expect = 1e-15 > Identities = 33/33 (100%), Gaps = 0/33 (0%) > Strand=Plus/Minus > > Query 1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 33 > ||||||||||||||||||||||||||||||||| > Sbjct 33 CGCGGGGATGACTCTAAGCATGGTGCAGGCGAT 1 > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > > On Sat, Jun 5, 2010 at 6:59 PM, Chris Fields wrote: >> StandAloneBlastPlus is the wrapper for BLAST+ (NCBI's C++-based BLAST implementation). StandAloneBlast is the C-based legacy BLAST (they have different parameters). >> >> For the rest, please see the associated documentation and the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:BlastPlus >> >> chris >> >> On Jun 5, 2010, at 6:16 PM, Peng Yu wrote: >> >>> It seems that StandAloneBlastPlus is a higher level wrapper than >>> BlastPlus. Is it better to use StandAloneBlastPlus? >>> >>> Essentially, what I need is to compare pairs of sequences. Note that I >>> want to use the bash Process substitution to avoid generating temp >>> files. Does StandAloneBlastPlus support this? If yes, would you please >>> how me what command to use? >>> >>> blastn -query <(echo >>> GTTGAGTCCAGGCATCCCTGCCATCCCTGAGATCGGAAGAGCGTTTCAGCAGGAATGCCGAGACCGATATCGTAT) >>> -subject <(echo >>> CAGGGATGGCAGGGATGCCTGGACTCAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGT) >>> >>> >>> On Sat, Jun 5, 2010 at 5:55 PM, Florent Angly wrote: >>>> To run BLAST locally, see bioperl-run / lib / Bio / Tools / Run / >>>> BlastPlus.pm >>>> Then to parse the results, you can read this: >>>> http://www.bioperl.org/wiki/HOWTO:SearchIO >>>> Florent >>>> >>>> On 06/06/2010 07:28 AM, Peng Yu wrote: >>>>> >>>>> There is a module to run blast remotely >>>>> Module:Bio::Tools::Run::RemoteBlast. But I installed blast locally and >>>>> I think that it makes more sense for me to run blast locally. Is there >>>>> a way to let bioperl parse the output from my local command line >>>>> blast? >>>>> >>>>> >>>> >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >>> >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Sun Jun 6 21:10:05 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 16:10:05 -0500 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> Message-ID: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> On Jun 6, 2010, at 1:29 PM, Dave Messina wrote: > > On Jun 6, 2010, at 2:04 PM, Dave Messina wrote: > >> If the file is outside of the checkout directory (i.e. installed and no .git subdir), how do we know what version it is? >> >> We can calculate the SHA1, but is there a git command that answers the question "where does the file with this SHA1 belong into the repository? > > To anwer my own question, yes: > > http://stackoverflow.com/questions/223678/git-which-commit-has-this-blob > > I copied the Perl script to here: > http://gist.github.com/427769 > > > If we get rid of the $Id$ tags as Chris proposes, it might be useful to make a note of it in the Wiki and link to the script. > > Dave For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: http://progit.org/book/ch7-2.html chris From David.Messina at sbc.su.se Sun Jun 6 21:27:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Sun, 6 Jun 2010 23:27:50 +0200 Subject: [Bioperl-l] Leftover SVN tags In-Reply-To: <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> References: <7F96A560-75A6-4241-82F7-ED45B813C90A@illinois.edu> <9700EBC0-0E81-4E5B-9183-96C7DBC00215@drycafe.net> <3ECFF37C-CD7C-496B-9F51-1AB40A9D0E4F@illinois.edu> <53FD8F35-614B-40DD-940B-0C5485D7083B@sbc.su.se> <26A017A5-4BAF-416D-8544-C4CED184517C@illinois.edu> Message-ID: > For purposes of tracking, might be just as useful to have the date. The Pro Git book has a way to do this using .gitattributes: > > http://progit.org/book/ch7-2.html Thanks for the pointer. Yeah, agreed on the date. The .gitattributes setup sounds good, particularly since it's automatic. Dave From pengyu.ut at gmail.com Sun Jun 6 22:29:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:29:39 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? Message-ID: There are many classes defined in Bio::Search, which is confusing to new users. Is there an inherentance graph and a dependency graph to help new users understand how they work? http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm For example, Bio::Search::HSP::GenericHSP is an implementation of Bio::Search::HSP::HSPI (if I'm correct), which is documented in the text. But I feel it would be much easier to see this relationship, if this is drawn graphically. -- Regards, Peng From pengyu.ut at gmail.com Sun Jun 6 22:52:18 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 17:52:18 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? Message-ID: The following perl program generate tmp files at the current directory, which is annoying. Is there a way to put the tmp files in a tmp directory say /tmp? #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first.fa'); my $seq2 = Bio::Perl::read_sequence('second.fa'); print $seq1->seq, "\n"; print $seq2->seq, "\n"; my $blast_result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); -- Regards, Peng From David.Messina at sbc.su.se Sun Jun 6 23:18:28 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:18:28 +0200 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: Our class diagram is way out of date, but I believe the SearchIO part is still basically the same. http://www.bioperl.org/wiki/Class_Diagram > But I feel it would be much easier to see this relationship, if > this is drawn graphically. Absolutely. Speaking of which, this has long been on our to-do list ? would you be interested in taking a crack at this? There's also the Deobfuscator, which allows you to see all of the methods available to an object, regardless of how far up the inheritance tree the method originates: http://www.bioperl.org/wiki/Deobfuscator Dave From cjfields at illinois.edu Sun Jun 6 23:23:44 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:23:44 -0500 Subject: [Bioperl-l] Inherent graph on classes in Bio::Search? In-Reply-To: References: Message-ID: <13884F06-106A-4D1B-A4EB-B2AF23ACA400@illinois.edu> Peng, Within Bio::Search, the hierarchy is easy enough. I'll leave out the full namespace for now to make this easier. Each ResultI object represents a single report; it may have multiple HitI objects (the hits), which further have multiple HSPI objects (the high-scoring paired alignments). Depending on the parser and the need for additional methods, each ResultI/HitI/HSPI may be implemented generically (GenericResult/Hit/HSP) or more specifically (e.g. ModelHit), but all observe the common interface (ResultI/HitI/HSPI) methods. So, you can hierarchically iterate through all the data in a report as follows: while (my $result = $in->next_result) { # grab ResultI stuff here while (my $hit = $result->next_hit) { # grab HitI stuff here while (my $hsp = $hit->next_hsp) { # grab HSPI stuff here } } } Much of this is already in the HOWTO. Not sure how much more we can explain to you via email. If you are really concerned about the objects returned to look up specific methods, just check them with ref() to get the class. Re: module usage: the module usage and inheritance graph for BioPerl is extremely complicated, but if you have a checkout of the git repo you can generate some of these using the (completely unsupported, don't ask for help :) module_usage.pl script in the maintenance folder. I agree a simple graphic might help; feel free to contribute one if you have the time. chris On Jun 6, 2010, at 5:29 PM, Peng Yu wrote: > There are many classes defined in Bio::Search, which is confusing to > new users. Is there an inherentance graph and a dependency graph to > help new users understand how they work? > > http://search.cpan.org/~cjfields/BioPerl-1.6.1/Bio/Search/HSP/GenericHSP.pm > > For example, Bio::Search::HSP::GenericHSP is an implementation of > Bio::Search::HSP::HSPI (if I'm correct), which is documented in the > text. But I feel it would be much easier to see this relationship, if > this is drawn graphically. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Sun Jun 6 23:32:57 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 01:32:57 +0200 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <2696B150-4993-4844-8FBB-A6A59944BE47@sbc.su.se> > Is there a way to put the tmp files in a > tmp directory say /tmp? Hmm, that probably shouldn't be happening. And indeed, BioPerl modules use File::Temp, which creates temp files in /tmp (or the equivalent). It's possible that it's a side effect of using Bio::Perl, which is composed of convenience methods for the beginner and is not really intended for serious use. For that reason, it may be writing in the current directory to minimize the possibility of write permissions errors which could be hard for a beginner to deal with. But that's only a guess. If you use Bio::SeqIO directly instead of read_seq and write_seq, and if you're still seeing temp files in your current directory, please let us know. Dave From cjfields at illinois.edu Sun Jun 6 23:37:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 18:37:32 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Peng, You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): Cleaning up temp files Temporary analysis files produced under a single factory instances can be unlinked by running $fac->cleanup; Tempfiles are generally not removed unless this method is explicitly called. "cleanup()" only unlinks "registered" files and databases. All temporary files are automatically registered; in particular, "anonymous" databases (such as $fac->Bio::Tools::Run::StandAloneBlastPlus->new( -db_data => 'myseqs.fas', -create => 1 ); without a "-db_name" specification) are registered for cleanup. Any file or database can be registered with an internal method: $fac->_register_temp_for_cleanup('testdb'); chris On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > The following perl program generate tmp files at the current > directory, which is annoying. Is there a way to put the tmp files in a > tmp directory say /tmp? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first.fa'); > my $seq2 = Bio::Perl::read_sequence('second.fa'); > print $seq1->seq, "\n"; > print $seq2->seq, "\n"; > > my $blast_result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From pengyu.ut at gmail.com Mon Jun 7 00:33:59 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 19:33:59 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: Chris, Sorry if I ask some question that is documented. I'm trying to read as much relevant document as I can, but I can't guarantee read everything that is relevant. I don't understand why "registered" files and databases are relevant for my use case. (BTW, what are "registered" files and what they are for?). I don't specify any database option when I call StandAloneBlastPlus in my example. If I call blast directly, I'll not get any tempfiles. Therefore, it is reasonable to expect not seeing any tempfiles with bioperl module as I understand StandAloneBlastPlus is a wrapper for blast+. What is the purpose of leaving temp files in the current directory? Is it better not to leave any tempfiles in the current directory by default? On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: > Peng, > > You really need to read all relevant documentation prior to firing off emails to the list. ?This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): > > ?Cleaning up temp files > ? ? ? Temporary analysis files produced under a single factory instances can > ? ? ? be unlinked by running > > ? ? ? ?$fac->cleanup; > > ? ? ? Tempfiles are generally not removed unless this method is explicitly > ? ? ? called. "cleanup()" only unlinks "registered" files and databases. All > ? ? ? temporary files are automatically registered; in particular, > ? ? ? "anonymous" databases (such as > > ? ? ? ?$fac->Bio::Tools::Run::StandAloneBlastPlus->new( > ? ? ? ? ?-db_data => 'myseqs.fas', > ? ? ? ? ?-create => 1 > ? ? ? ?); > > ? ? ? without a "-db_name" specification) are registered for cleanup. Any > ? ? ? file or database can be registered with an internal method: > > ? ? ? ?$fac->_register_temp_for_cleanup('testdb'); > > > > chris > > On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: > >> The following perl program generate tmp files at the current >> directory, which is annoying. Is there a way to put the tmp files in a >> tmp directory say /tmp? >> >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::Tools::Run::StandAloneBlastPlus; >> use Bio::Perl; >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> my $seq1 = Bio::Perl::read_sequence('first.fa'); >> my $seq2 = Bio::Perl::read_sequence('second.fa'); >> print $seq1->seq, "\n"; >> print $seq2->seq, "\n"; >> >> my $blast_result=$factory->bl2seq(-method=>'blastn', >> ?-query=> $seq1, >> ?-subject=> $seq2 >> ); >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Regards, Peng From pengyu.ut at gmail.com Mon Jun 7 01:25:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 20:25:50 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? Message-ID: It is not clear to me what is_remote is for in Bio::Location::Simple. Neither the perldoc or the following webpage discuss what it means. http://www.bioperl.org/wiki/BioPerl_Locations $ is_remote/main.pl Use of uninitialized value in print at is_remote/main.pl line 11. $ cat is_remote/main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Location::Simple; my $location = Bio::Location::Simple->new(-start => 1, -end => 100, -strand => 1 ); print $location->is_remote(), "\n"; ######## I looked at the source code Simple.pm. I don't see is_remote() is defined in it. Is it deprecate? Should the document for it be removed? -- Regards, Peng From cjfields at illinois.edu Mon Jun 7 03:03:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:03:21 -0500 Subject: [Bioperl-l] How put tmp file in the tmp directory when using Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: On Jun 6, 2010, at 7:33 PM, Peng Yu wrote: > Chris, > > Sorry if I ask some question that is documented. I'm trying to read as > much relevant document as I can, but I can't guarantee read everything > that is relevant. I found the appropriate answer to your question within 2 minutes of reading your post, using a simple ack search (or grep if you prefer) on the StandAloneBlastPlus documentation, then used perldoc as previously mentioned. If you are unwilling to spend 5x that (only 10 minutes), and are unwilling to read the relevant documentation, and are so ready to admit it, why would you expect us to spend our (extremely valuable) time helping you? > I don't understand why "registered" files and databases are relevant > for my use case. (BTW, what are "registered" files and what they are > for?). I don't specify any database option when I call > StandAloneBlastPlus in my example. If I call blast directly, I'll not > get any tempfiles. Therefore, it is reasonable to expect not seeing > any tempfiles with bioperl module as I understand StandAloneBlastPlus > is a wrapper for blast+. What is the purpose of leaving temp files in > the current directory? Is it better not to leave any tempfiles in the > current directory by default? We have provided you an answer. You possibly have a point (why not remove the tempfiles), but you'll have to ask the module author(s) that for their reasoning. You can always make that suggestion, or perhaps even submit a patch, and work around the problem in the meantime. Contribute something constructive. We value that. But your posts at this point come across as rote complaining, not suggestions, and your general lack of appreciation/gratitude for any answers we've already given you does not exactly endear yourself to those whose time is very limited. chris > On Sun, Jun 6, 2010 at 6:37 PM, Chris Fields wrote: >> Peng, >> >> You really need to read all relevant documentation prior to firing off emails to the list. This is answered in the StandAloneBlastPlus installed documentation ('perldoc Bio::Tools::Run::StandAloneBlastPlus'): >> >> Cleaning up temp files >> Temporary analysis files produced under a single factory instances can >> be unlinked by running >> >> $fac->cleanup; >> >> Tempfiles are generally not removed unless this method is explicitly >> called. "cleanup()" only unlinks "registered" files and databases. All >> temporary files are automatically registered; in particular, >> "anonymous" databases (such as >> >> $fac->Bio::Tools::Run::StandAloneBlastPlus->new( >> -db_data => 'myseqs.fas', >> -create => 1 >> ); >> >> without a "-db_name" specification) are registered for cleanup. Any >> file or database can be registered with an internal method: >> >> $fac->_register_temp_for_cleanup('testdb'); >> >> >> >> chris >> >> On Jun 6, 2010, at 5:52 PM, Peng Yu wrote: >> >>> The following perl program generate tmp files at the current >>> directory, which is annoying. Is there a way to put the tmp files in a >>> tmp directory say /tmp? >>> >>> #!/usr/bin/env perl >>> >>> use strict; >>> use warnings; >>> use Bio::Tools::Run::StandAloneBlastPlus; >>> use Bio::Perl; >>> >>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >>> >>> my $seq1 = Bio::Perl::read_sequence('first.fa'); >>> my $seq2 = Bio::Perl::read_sequence('second.fa'); >>> print $seq1->seq, "\n"; >>> print $seq2->seq, "\n"; >>> >>> my $blast_result=$factory->bl2seq(-method=>'blastn', >>> -query=> $seq1, >>> -subject=> $seq2 >>> ); >>> >>> -- >>> Regards, >>> Peng >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Mon Jun 7 03:21:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 22:21:56 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: Message-ID: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > It is not clear to me what is_remote is for in Bio::Location::Simple. > Neither the perldoc or the following webpage discuss what it means. > > http://www.bioperl.org/wiki/BioPerl_Locations As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. Huh. is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). That is one thing that needs additional documentation (see below). > $ is_remote/main.pl > Use of uninitialized value in print at is_remote/main.pl line 11. > $ cat is_remote/main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > > use Bio::Location::Simple; > > my $location = Bio::Location::Simple->new(-start => 1, -end => 100, > -strand => 1 ); > > print $location->is_remote(), "\n"; > > ######## > I looked at the source code Simple.pm. I don't see is_remote() is > defined in it. Is it deprecate? Should the document for it be removed? > > -- > Regards, > Peng No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: Title : is_remote Usage : $is_remote_loc = $loc->is_remote() Function: Whether or not a location is a remote location. A location is said to be remote if it is on a different 'object' than the object which 'has' this location. Typically, features on a sequence will sometimes have a remote location, which means that the location of the feature is on a different sequence than the one that is attached to the feature. In such a case, $loc->seq_id will be different from $feat->seq_id (usually they will be the same). While this may sound weird, it reflects the location of the kind of AB18375:450-900 which can be found in GenBank/EMBL feature tables. Example : Returns : TRUE if the location is a remote location, and FALSE otherwise Args : Value to set to chris From pengyu.ut at gmail.com Mon Jun 7 03:46:04 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 22:46:04 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: > On Jun 6, 2010, at 8:25 PM, Peng Yu wrote: > >> It is not clear to me what is_remote is for in Bio::Location::Simple. >> Neither the perldoc or the following webpage discuss what it means. >> >> http://www.bioperl.org/wiki/BioPerl_Locations > > As explained at the top of that page, it is a spec page that explains some things about locations, but is nowhere near complete. In fact, I almost forgot I wrote that up years ago. ?Huh. > > is_remote() is just a boolean indicating the location is_remote (is located on a remote sequence). ?That is one thing that needs additional documentation (see below). > >> $ is_remote/main.pl >> Use of uninitialized value in print at is_remote/main.pl line 11. >> $ cat is_remote/main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> >> use Bio::Location::Simple; >> >> my $location = Bio::Location::Simple->new(-start => 1, -end => 100, >> ?-strand => 1 ); >> >> print $location->is_remote(), "\n"; >> >> ######## >> I looked at the source code Simple.pm. I don't see is_remote() is >> defined in it. Is it deprecate? Should the document for it be removed? >> >> -- >> Regards, >> Peng > > > No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. > > Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: > > ?Title ? : is_remote > ?Usage ? : $is_remote_loc = $loc->is_remote() > ?Function: Whether or not a location is a remote location. > > ? ? ? ? ? A location is said to be remote if it is on a different > ? ? ? ? ? 'object' than the object which 'has' this > ? ? ? ? ? location. Typically, features on a sequence will sometimes > ? ? ? ? ? have a remote location, which means that the location of > ? ? ? ? ? the feature is on a different sequence than the one that is > ? ? ? ? ? attached to the feature. In such a case, $loc->seq_id will > ? ? ? ? ? be different from $feat->seq_id (usually they will be the > ? ? ? ? ? same). > > ? ? ? ? ? While this may sound weird, it reflects the location of the > ? ? ? ? ? kind of AB18375:450-900 which can be found in GenBank/EMBL > ? ? ? ? ? feature tables. This explain sounds to abstract to me. Would you please give me some examples on what it means? -- Regards, Peng From cjfields at illinois.edu Mon Jun 7 04:46:13 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sun, 6 Jun 2010 23:46:13 -0500 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> Message-ID: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> On Jun 6, 2010, at 10:46 PM, Peng Yu wrote: > On Sun, Jun 6, 2010 at 10:21 PM, Chris Fields wrote: >> ...No, it isn't deprecated, but is defined in the base class Bio::Location::Atomic. >> >> Here is the relevant documentation in Bio::LocationI, has just been updated in the implementations on github: >> >> Title : is_remote >> Usage : $is_remote_loc = $loc->is_remote() >> Function: Whether or not a location is a remote location. >> >> A location is said to be remote if it is on a different >> 'object' than the object which 'has' this >> location. Typically, features on a sequence will sometimes >> have a remote location, which means that the location of >> the feature is on a different sequence than the one that is >> attached to the feature. In such a case, $loc->seq_id will >> be different from $feat->seq_id (usually they will be the >> same). >> >> While this may sound weird, it reflects the location of the >> kind of AB18375:450-900 which can be found in GenBank/EMBL >> feature tables. > > This explain sounds to abstract to me. Would you please give me some > examples on what it means? > > -- > Regards, > Peng Like it says; the Location indicated may not be found in the current location or group of locations, but may be located remotely (in another sequence). For instance: http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank BRCA2 has a split location, one located in this sequence record (AL137247), and one located remotely, in another sequence record (in AL445212.9): join(AL445212.9:83662..166657,101..841) In order to contain both of them together and have them splice correctly when needed, one must indicate that the sequence of interest for the location is not remote (is the current one) or is remote (and needs to be retrieved prior to additional work). chris From pengyu.ut at gmail.com Mon Jun 7 06:04:55 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 01:04:55 -0500 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? Message-ID: I have the following two sequences which don't have any hits. But the perl code gives num_hits =1 (see below). Is it a bug in parsing blast results? $ make blastn -query <(echo CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) -subject <(echo GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > HWI-EAS11X_10097_4_1_1523_15064.txt $ cat first1.fa >first1 CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC $ cat second1.fa >second1 GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG $ cat HWI-EAS11X_10097_4_1_1523_15064.txt BLASTN 2.2.23+ Query= Length=75 Subject= Length=75 ***** No hits found ***** Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 4761 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 0 ##### But the following code and output shows that there is one hit? $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::Tools::Run::StandAloneBlastPlus; use Bio::Perl; use Data::Dumper; my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $seq1 = Bio::Perl::read_sequence('first1.fa'); my $seq2 = Bio::Perl::read_sequence('second1.fa'); my $result=$factory->bl2seq(-method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; print 'ref($factory): ', ref($factory), "\n"; print 'ref($result): ', ref($result), "\n"; print "num_hits: ", $result->num_hits, "\n"; while(my $hit = $result->next_hit()) { print ref($hit), "\n"; print Dumper($hit), "\n"; } $ ./main.pl ref($factory): Bio::Tools::Run::StandAloneBlastPlus ref($result): Bio::Search::Result::BlastResult num_hits: 1 Bio::Search::Hit::BlastHit $VAR1 = bless( { '_hsps' => undef, '_iterator' => 0, '_description' => '', '_query_length' => '75', '_accession' => 'second1', '_length' => '75', '_name' => 'second1', '_rank' => 1, '_algorithm' => 'BLASTN', '_root_verbose' => 0, '_hsp_factory' => bless( { 'interface' => 'Bio::Search::HSP::HSPI', 'type' => 'Bio::Search::HSP::GenericHSP', '_loaded_types' => { 'Bio::Search::HSP::GenericHSP' => 1 }, '_root_verbose' => 0 }, 'Bio::Factory::ObjectFactory' ) }, 'Bio::Search::Hit::BlastHit' ); -- Regards, Peng From adsj at novozymes.com Mon Jun 7 15:04:44 2010 From: adsj at novozymes.com (Adam =?iso-8859-1?Q?Sj=F8gren?=) Date: Mon, 07 Jun 2010 17:04:44 +0200 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels Message-ID: <87sk4ynasz.fsf@topper.koldfront.dk> Does an easy way exist to use unicode/utf-8 characters in labels on tracks with Bio::Graphics::Panel? A script like this: = = = #!/usr/bin/perl use strict; use warnings; use utf8; use Bio::Graphics::Panel; use Bio::SeqFeature::Generic; use File::Slurp; my $label='?-glucosidase'; my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); $panel->add_track($feature, -label=>$label); write_file('panel.png', $panel->png); = = = Gives me a panel.png that very much looks like the label was interpreted as something like, say, latin1, which makes sense from a quick search in the GD pod - it refers to stringFT() for using unicode characters, and a quick ack for stringFT() in Bio/Graphics/ only shows hits in DrawTransmembrane. This makes me guess the answer is no, but I thought I'd ask anyway, in case I overlooked something. Best regards, Adam -- Adam Sj?gren adsj at novozymes.com From scott at scottcain.net Mon Jun 7 15:42:28 2010 From: scott at scottcain.net (Scott Cain) Date: Mon, 7 Jun 2010 11:42:28 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Hi Adam, I don't know for sure, but I'm guessing that the reason BioGraphics doesn't use stringFT is because it requires that libgd be compiled with TrueType in order to work, and frequently, libgd isn't compiled with it, and it frequently gives people a hard time getting it compiled, and would add one more barrier to entry to people who want to use BioGraphics and GBrowse. Scott On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > ?Best regards, > > ? ? Adam > > -- > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?Adam Sj?gren > ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From hlapp at drycafe.net Mon Jun 7 16:14:35 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Mon, 7 Jun 2010 12:14:35 -0400 Subject: [Bioperl-l] Bio::Location::Simple's is_remote() missing? In-Reply-To: <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> References: <554C33BA-559E-4FEB-AB1B-E01D9756AA69@illinois.edu> <720C1EB9-96C0-43D8-8C31-FA6E1193380C@illinois.edu> Message-ID: On Jun 7, 2010, at 12:46 AM, Chris Fields wrote: > For instance: > > http://www.ncbi.nlm.nih.gov/nuccore/13161546?report=genbank > > BRCA2 has a split location, one located in this sequence record > (AL137247), and one located remotely, in another sequence record (in > AL445212.9): I guess we should replace the sample (apparently bogus? I thought it was real.) in the doc with this one, so people can be expected to type this in at NCBI and go check it out for themselves. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From lincoln.stein at gmail.com Mon Jun 7 16:14:41 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 7 Jun 2010 12:14:41 -0400 Subject: [Bioperl-l] Bio::Graphics::Panel and utf-8 chars in labels In-Reply-To: <87sk4ynasz.fsf@topper.koldfront.dk> References: <87sk4ynasz.fsf@topper.koldfront.dk> Message-ID: Unfortunately, Bio::Graphics doesn't take advantage of TrueType capabilities in GD. There were too many problems associated with installation. This could be added in some sort of generic fashion (invoke the truetype calls if GD supports it, and fallback to bitmap characters if not), but will require a lot of detailed changes to the source code. If anybody would like to volunteer to do this, I can explain the process. Lincoln On Mon, Jun 7, 2010 at 11:04 AM, Adam Sj?gren wrote: > Does an easy way exist to use unicode/utf-8 characters in labels on > tracks with Bio::Graphics::Panel? > > A script like this: > > = = = > #!/usr/bin/perl > > use strict; > use warnings; > > use utf8; > > use Bio::Graphics::Panel; > use Bio::SeqFeature::Generic; > use File::Slurp; > > my $label='?-glucosidase'; > > my $panel=Bio::Graphics::Panel->new(-width=>400, -length=>200); > my $feature=Bio::SeqFeature::Generic->new(-start=>1, -end=>100, > -primary_tag=>'source'); > $panel->add_track($feature, -label=>$label); > > write_file('panel.png', $panel->png); > = = = > > Gives me a panel.png that very much looks like the label was interpreted > as something like, say, latin1, which makes sense from a quick search in > the GD pod - it refers to stringFT() for using unicode characters, and a > quick ack for stringFT() in Bio/Graphics/ only shows hits in > DrawTransmembrane. > > This makes me guess the answer is no, but I thought I'd ask anyway, in > case I overlooked something. > > > Best regards, > > Adam > > -- > Adam Sj?gren > adsj at novozymes.com > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From rondonbio at yahoo.com.br Mon Jun 7 16:33:54 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 09:33:54 -0700 (PDT) Subject: [Bioperl-l] How to do a megablast with Bioperl? Message-ID: <594075.68159.qm@web63705.mail.re1.yahoo.com> Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. thank you Rondon From David.Messina at sbc.su.se Mon Jun 7 17:30:16 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:30:16 +0200 Subject: [Bioperl-l] How to do a megablast with Bioperl? In-Reply-To: <594075.68159.qm@web63705.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> Message-ID: <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> > Hi! How can I do a megablast with Bioperl? I looked for that in tutorials and didn't find anything. http://www.bioperl.org/wiki/HOWTO:SearchIO From David.Messina at sbc.su.se Mon Jun 7 17:58:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 19:58:12 +0200 Subject: [Bioperl-l] Res: How to do a megablast with Bioperl? In-Reply-To: <952808.56069.qm@web63706.mail.re1.yahoo.com> References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: Hi Rondon, Please keep the list on the Cc so everyone can follow along. > Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From rondonbio at yahoo.com.br Mon Jun 7 18:01:23 2010 From: rondonbio at yahoo.com.br (Rondon Neto) Date: Mon, 7 Jun 2010 11:01:23 -0700 (PDT) Subject: [Bioperl-l] Res: Res: How to do a megablast with Bioperl? In-Reply-To: References: <594075.68159.qm@web63705.mail.re1.yahoo.com> <0592A9AA-3566-4C3C-815D-F2797EFCC8E4@sbc.su.se> <952808.56069.qm@web63706.mail.re1.yahoo.com> Message-ID: <466678.83185.qm@web63707.mail.re1.yahoo.com> Thank you! Rondon ________________________________ De: Dave Messina Para: Rondon Neto Cc: BioPerl List Enviadas: Segunda-feira, 7 de Junho de 2010 14:58:12 Assunto: Re: Res: [Bioperl-l] How to do a megablast with Bioperl? Hi Rondon, Please keep the list on the Cc so everyone can follow along. Thank you, but it's for parse blast results, right? Can I really perform a megablast using bioperl? > Sorry, I read your last post too fast. You can do it with either Bio::Tools::Run::StandAloneBlast or B::T::R::StandAloneBlastPlus: http://www.bioperl.org/wiki/HOWTO:StandAloneBlast http://bioperl.org/wiki/HOWTO:BlastPlus Note that in blastplus, megablast is the default -task Dave PS ? I noticed that the StandAloneBlast is no longer on the HOWTOs index page. Is it deprecated? From armendarez77 at hotmail.com Mon Jun 7 18:27:33 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 11:27:33 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: Hello again, We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Thanks, Veronica > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: cjfields at illinois.edu > Date: Sat, 5 Jun 2010 07:34:34 -0500 > CC: armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > To: David.Messina at sbc.su.se > > Just to note, it's very likely the web version is running Primer3 v2. The BioPerl wrapper for Primer3 only supports v1; I rewrote the wrapper and parser to support both versions. It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > chris > > On Jun 4, 2010, at 7:16 PM, Dave Messina wrote: > > > Hi Veronica, > > > > Without having checked to be sure, my guess is that either the version of Primer3 on the website is different from the one you're running locally or the default parameters on the website are different from the default parameters when running via B::T::R::Primer3. > > > > If you run Primer3 on your machine outside of BioPerl ? that is, just on the command line directly ? do you get the same results as on the website? > > > > > > Dave > > > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From David.Messina at sbc.su.se Mon Jun 7 18:41:00 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 20:41:00 +0200 Subject: [Bioperl-l] Fwd: Bio::Tools::Run::Primer3 vs Web Primer 3 References: Message-ID: <5FF5637B-2248-4E33-9F40-0048D268C7E3@sbc.su.se> On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From pengyu.ut at gmail.com Sun Jun 6 14:04:23 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Sun, 6 Jun 2010 09:04:23 -0500 Subject: [Bioperl-l] ./Build install doesn't install bioperl-run In-Reply-To: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> References: <0CBBD275-3F16-49ED-B7CA-1D9E6BA0FF57@sbc.su.se> Message-ID: My perl is installed in a directory in my home. I think that bioperl will be installed in the directory in the perl directory in my home, right? On Sun, Jun 6, 2010 at 8:28 AM, Dave Messina wrote: > > On Jun 6, 2010, at 3:01 PM, Peng Yu wrote: > >> I downloaded bioperl-live and bioperl-run by svn. > > By svn from Github? I was confused. Yes, I meant git. I downloaded the files by the following commands. BTW, the following web address better be changed to 'Using_git". http://www.bioperl.org/wiki/Using_Subversion git clone git://github.com/bioperl/bioperl-live.git git clone git://github.com/bioperl/bioperl-run.git >> bioperl-run$ ./Build install >> Building BioPerl-Run >> >> I'm wondering how to fix the problem. > > We'll need more information to figure out what the problem is. > > Can you post the whole transcript of your failed install? I assume that you are asking the Build script. Please see the attachment. Let me know if you mean something else. -- Regards, Peng -------------- next part -------------- A non-text attachment was scrubbed... Name: Build Type: application/octet-stream Size: 1881 bytes Desc: not available URL: From dave at davemessina.com Mon Jun 7 18:33:28 2010 From: dave at davemessina.com (Dave Messina) Date: Mon, 7 Jun 2010 20:33:28 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu> Message-ID: On Jun 7, 2010, at 8:27 PM, wrote: > Hello again, > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: http://github.com/bioperl/bioperl-dev Dave > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > From: cjfields at illinois.edu > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. From jessica.sun at gmail.com Mon Jun 7 19:12:42 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Mon, 7 Jun 2010 15:12:42 -0400 Subject: [Bioperl-l] Get variation included in genbank file Message-ID: Does any know how to include variation(dbSNP) in the genbank file format automatically using NM_ accession number using bioperl? thanks -- Jessica Jingping Sun From jason at bioperl.org Mon Jun 7 19:58:58 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 07 Jun 2010 12:58:58 -0700 Subject: [Bioperl-l] num_hits and next_hit() bug in Bio::Search::Result::BlastResult? In-Reply-To: References: Message-ID: <4C0D4F82.1060104@bioperl.org> You always get a hit with BL2Seq with the Query= and Subject= in the report - but you'll notice for your parsed example there are no HSPs. The fact that the bl2seq format reports the subject means you get a hit no matter what. What exactly are you trying to do this seems like a bad example. Just run a BLAST of a query against a database or look at the example reports in the t/data directory if you want to try and parse a BLAST report. If you are using short reads to do alignments to reference sequences you really don't want to be using BLAST anyways. -jason Peng Yu wrote, On 6/6/10 11:04 PM: > I have the following two sequences which don't have any hits. But the > perl code gives num_hits =1 (see below). Is it a bug in parsing blast > results? > > $ make > blastn -query<(echo > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC) > -subject<(echo > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG) > >> HWI-EAS11X_10097_4_1_1523_15064.txt >> > $ cat first1.fa > >> first1 >> > CACGACAACCCTGTATGCACACTGGTGTCTTCCAGATCGGAAGGGCGGTTCAGCAGGAATGCCGAGGCCGGTATC > $ cat second1.fa > >> second1 >> > GGAAGACACCAGTGTGCATACAGGGGTGTCGTGAGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGGAGATCTCGG > > > $ cat HWI-EAS11X_10097_4_1_1523_15064.txt > BLASTN 2.2.23+ > > > Query= > Length=75 > > Subject= > Length=75 > > > ***** No hits found ***** > > > > Lambda K H > 1.33 0.621 1.12 > > Gapped > Lambda K H > 1.28 0.460 0.850 > > Effective search space used: 4761 > > > > > Matrix: blastn matrix 1 -2 > Gap Penalties: Existence: 0, Extension: 0 > > ##### > > But the following code and output shows that there is one hit? > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::Tools::Run::StandAloneBlastPlus; > use Bio::Perl; > use Data::Dumper; > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > > my $seq1 = Bio::Perl::read_sequence('first1.fa'); > my $seq2 = Bio::Perl::read_sequence('second1.fa'); > > my $result=$factory->bl2seq(-method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > > $factory->cleanup; > > print 'ref($factory): ', ref($factory), "\n"; > print 'ref($result): ', ref($result), "\n"; > > print "num_hits: ", $result->num_hits, "\n"; > while(my $hit = $result->next_hit()) { > print ref($hit), "\n"; > print Dumper($hit), "\n"; > } > $ ./main.pl > ref($factory): Bio::Tools::Run::StandAloneBlastPlus > ref($result): Bio::Search::Result::BlastResult > num_hits: 1 > Bio::Search::Hit::BlastHit > $VAR1 = bless( { > '_hsps' => undef, > '_iterator' => 0, > '_description' => '', > '_query_length' => '75', > '_accession' => 'second1', > '_length' => '75', > '_name' => 'second1', > '_rank' => 1, > '_algorithm' => 'BLASTN', > '_root_verbose' => 0, > '_hsp_factory' => bless( { > 'interface' => > 'Bio::Search::HSP::HSPI', > 'type' => > 'Bio::Search::HSP::GenericHSP', > '_loaded_types' => { > > 'Bio::Search::HSP::GenericHSP' => 1 > }, > '_root_verbose' => 0 > }, 'Bio::Factory::ObjectFactory' ) > }, 'Bio::Search::Hit::BlastHit' ); > > > > From armendarez77 at hotmail.com Mon Jun 7 20:32:15 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Mon, 7 Jun 2010 13:32:15 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? zlawson at blaze:~/source/bioperl-dev$ git-clone http://github.com/bioperl/bioperl-dev.git Initialized empty Git repository in /home/zlawson/source/bioperl-dev/bioperl-dev/.git/ Getting alternates list for http://github.com/bioperl/bioperl-dev.git Getting pack list for http://github.com/bioperl/bioperl-dev.git Getting index for pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 Getting index for pack f4ab7dabc9b978eefae48bfcbb60adf121d67544 Getting pack 8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767 which contains 773d8780bb982f858883cecca28cc45a919755bf error: Unable to get pack file http://github.com/bioperl/bioperl-dev.git/objects/pack/pack-8c45d3ee25ab04d7d82bc0eaabbf22b1ffc1c767.pack transfer closed with 20247502 bytes remaining to read error: Unable to find 773d8780bb982f858883cecca28cc45a919755bf under http://github.com/bioperl/bioperl-dev.git Cannot obtain needed object 773d8780bb982f858883cecca28cc45a919755bf Thank you, Veronica > From: dave at davemessina.com > Date: Mon, 7 Jun 2010 20:33:28 +0200 > To: armendarez77 at hotmail.com > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > On Jun 7, 2010, at 8:27 PM, wrote: > > > Hello again, > > > > We just upgraded to BioPerl 1.6.1 (from 1.6.0), but neither Bio::Tools::Primer3Redux or Bio::Tools::Run::Primer3Redux were included in the modules. We looked at CPAN, but they weren't found their either. From where can we download these modules? > > Right, it's in bioperl-dev, not bioperl-core, so you can download it from here: > > http://github.com/bioperl/bioperl-dev > > > Dave > > > > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > > > From: cjfields at illinois.edu > > > > It's called Bio::Tools::Primer3Redux and Bio::Tools::Run::Primer3Redux, and is present in bioperl-dev if anyone is interested. > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From David.Messina at sbc.su.se Mon Jun 7 20:38:48 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 22:38:48 +0200 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , Message-ID: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> On Jun 7, 2010, at 10:32 PM, wrote: > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave From David.Messina at sbc.su.se Mon Jun 7 21:18:03 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 7 Jun 2010 23:18:03 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: Message-ID: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Hi Jessica, > Does any know how to include variation(dbSNP) in the genbank file format > automatically using NM_ accession number using bioperl? I'm not sure I understand the question. As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. More information here: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook If that's not what you're after, could you clarify what you want to do? Dave From Russell.Smithies at agresearch.co.nz Mon Jun 7 21:27:51 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 09:27:51 +1200 Subject: [Bioperl-l] new record? In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Is there a class assignment due? I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From jay at jays.net Mon Jun 7 23:38:00 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 7 Jun 2010 18:38:00 -0500 Subject: [Bioperl-l] new record? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32D904B7010@exchsth.agresearch.co.nz> Message-ID: <7BEC3D64-7C3E-4F77-898A-103707DEAD3C@jays.net> On Jun 7, 2010, at 4:27 PM, Smithies, Russell wrote: > Is there a class assignment due? > I think ~75 messages on the list in 3 days must be a new record, especially over a weekend ;-) Join us in IRC for some peace and quiet. :) http://bioperl.org/wiki/IRC Jay Hannah Email Haters United Against Icky Email - Eww! http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Tue Jun 8 01:14:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Mon, 7 Jun 2010 20:14:50 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? (Bio::Seq::Quality) Message-ID: Hello All, I want to retrieve the original encoded quality string. But it seems that Bio::Seq::Quality has already converted them into numerical array. Is there a method that can help retrieve the original encoded quality string such as "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb"? -- Regards, Peng $ cat main.fastq @HWI-EAS11X_10097:4:1:1909:9532#0/1 CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTC + ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LTb @HWI-EAS11X_10097:4:1:1948:6460#0/1 CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGAT + dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBBB @HWI-EAS11X_10097:4:1:1986:2311#0/1 CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAT + effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL] $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::SeqIO; my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq-illumina'); while (my $seq = $in->next_seq()) { print ref($seq), "\n"; print $seq->qual_text, "\n"; } $ ./main.pl Bio::Seq::Quality 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 25 20 30 12 20 34 Bio::Seq::Quality 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 31 2 2 2 2 2 Bio::Seq::Quality 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 25 29 12 26 12 29 From dimitark at bii.a-star.edu.sg Tue Jun 8 02:02:31 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 10:02:31 +0800 Subject: [Bioperl-l] about blast Message-ID: <4C0DA4B7.9000009@bii.a-star.edu.sg> Hi guys, i stumbled upon a problem. How can i run a psiblast with StandAloneBlastPlus without the query? I mean in normal psiblast there is a possibility that one can actually blast with the option '-in_pssm' instead of query. Of course first you need to run a psiblast with more than one iterations with option '-out_pssm' which produces the file which can be used by '-in_pssm'. Now in BioPerl i removed my query from the options and i got: ---------- MSG: Blast run: query data required, use -query STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::Tools::Run::StandAloneBlastPlus::run /usr/lib64/perl5/site_perl/5.10.0/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.pm:216 ---------- Somehow it would be nice to check the method args in the module and when there is the option '-in_pssm' the check for query should be different(opposite to the one now). I hope i made it clear :) Cheers Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From Russell.Smithies at agresearch.co.nz Tue Jun 8 02:59:34 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Tue, 8 Jun 2010 14:59:34 +1200 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> A bit hacky and there's probably a "proper" way to do it but this works: while (my $seq = $in->next_dataset()) { print %{$seq}->{'-id'},"\n"; print %{$seq}->{'-raw_quality'},"\n"; print %{$seq}->{'-seq'},"\n"; print join ' ',@{ %{$seq}->{'-qual'}},"\n"; } > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Tuesday, 8 June 2010 1:15 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to print encoded fastq quality string? > (Bio::Seq::Quality) > > Hello All, > > I want to retrieve the original encoded quality string. But it seems > that Bio::Seq::Quality has already converted them into numerical > array. Is there a method that can help retrieve the original encoded > quality string such as > "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L > Tb"? > > -- > Regards, > Peng > > $ cat main.fastq > @HWI-EAS11X_10097:4:1:1909:9532#0/1 > CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT > C > + > ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT > b > @HWI-EAS11X_10097:4:1:1948:6460#0/1 > CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA > T > + > dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB > B > @HWI-EAS11X_10097:4:1:1986:2311#0/1 > CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA > T > + > effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL > ] > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::SeqIO; > > my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- > illumina'); > > while (my $seq = $in->next_seq()) { > print ref($seq), "\n"; > print $seq->qual_text, "\n"; > } > $ ./main.pl > Bio::Seq::Quality > 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 > 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 > 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 > 25 20 30 12 20 34 > Bio::Seq::Quality > 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 > 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 > 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 > 31 2 2 2 2 2 > Bio::Seq::Quality > 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 > 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 > 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 > 25 29 12 26 12 29 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Tue Jun 8 03:17:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:17:08 -0500 Subject: [Bioperl-l] How to print encoded fastq quality string? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D90656092@exchsth.agresearch.co.nz> Message-ID: <1B63775A-EC2A-4BC2-9F4D-47EDEB101B7B@illinois.edu> Yes, this is the way to currently do it from the hash ref, but the actual key/value pairings there may change depending on a few things. I'm probably going to get something started up amongst the various Bio* to see if we can standardize generically parsing this data into somewhat standardized data structures, both for downstream use (creating objects) and other purposes. The current k/v pairs won't change until that happens, but if we manage to come up with some standard I assume we will change them accordingly. chris On Jun 7, 2010, at 9:59 PM, Smithies, Russell wrote: > A bit hacky and there's probably a "proper" way to do it but this works: > > > while (my $seq = $in->next_dataset()) { > print %{$seq}->{'-id'},"\n"; > print %{$seq}->{'-raw_quality'},"\n"; > print %{$seq}->{'-seq'},"\n"; > print join ' ',@{ %{$seq}->{'-qual'}},"\n"; > } > > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Tuesday, 8 June 2010 1:15 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to print encoded fastq quality string? >> (Bio::Seq::Quality) >> >> Hello All, >> >> I want to retrieve the original encoded quality string. But it seems >> that Bio::Seq::Quality has already converted them into numerical >> array. Is there a method that can help retrieve the original encoded >> quality string such as >> "ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^L >> Tb"? >> >> -- >> Regards, >> Peng >> >> $ cat main.fastq >> @HWI-EAS11X_10097:4:1:1909:9532#0/1 >> CGCGGGGATGACTCTAAGCATGGTGCAGGCGATAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCT >> C >> + >> ffffff`edfffeeff^ffefffeeeef`ffcf`deedaYcceecdcedaffffefaaYfc`ccc`TdaYT^LT >> b >> @HWI-EAS11X_10097:4:1:1948:6460#0/1 >> CATGGCTTACATGCTGAGTGCCAACATGGACCAGGGAGATCGGAAGATCGGTTCAGCAGGAATGCCGAGACCGA >> T >> + >> dc^c^dddadLcccLc\^acaa^Yca^caYYcacc^YbJ^aTcaT`KKacY\LL\c^\YTTYLL\TL_T_BBBB >> B >> @HWI-EAS11X_10097:4:1:1986:2311#0/1 >> CTAGGCTTCCTCCCCTCCGTCAGGGCCACTCTCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATA >> T >> + >> effaYefffcffdfecefbeffdce^eLedd`e\YcaceeffcYeaeee\ddcT\\TaYTaddbYbbL^Y]LZL >> ] >> $ cat main.pl >> #!/usr/bin/env perl >> >> use strict; >> use warnings; >> use Bio::SeqIO; >> >> my $in=Bio::SeqIO->new(-file => "main.fastq", -format => 'fastq- >> illumina'); >> >> while (my $seq = $in->next_seq()) { >> print ref($seq), "\n"; >> print $seq->qual_text, "\n"; >> } >> $ ./main.pl >> Bio::Seq::Quality >> 38 38 38 38 38 38 32 37 36 38 38 38 37 37 38 38 30 38 38 37 38 38 38 >> 37 37 37 37 38 32 38 38 35 38 32 36 37 37 36 33 25 35 35 37 37 35 36 >> 35 37 36 33 38 38 38 38 37 38 33 33 25 38 35 32 35 35 35 32 20 36 33 >> 25 20 30 12 20 34 >> Bio::Seq::Quality >> 36 35 30 35 30 36 36 36 33 36 12 35 35 35 12 35 28 30 33 35 33 33 30 >> 25 35 33 30 35 33 25 25 35 33 35 35 30 25 34 10 30 33 20 35 33 20 32 >> 11 11 33 35 25 28 12 12 28 35 30 28 25 20 20 25 12 12 28 20 12 31 20 >> 31 2 2 2 2 2 >> Bio::Seq::Quality >> 37 38 38 33 25 37 38 38 38 35 38 38 36 38 37 35 37 38 34 37 38 38 36 >> 35 37 30 37 12 37 36 36 32 37 28 25 35 33 35 37 37 38 38 35 25 37 33 >> 37 37 37 28 36 36 35 20 28 28 20 33 25 20 33 36 36 34 25 34 34 12 30 >> 25 29 12 26 12 29 >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From dimitark at bii.a-star.edu.sg Tue Jun 8 03:22:04 2010 From: dimitark at bii.a-star.edu.sg (Dimitar Kenanov) Date: Tue, 08 Jun 2010 11:22:04 +0800 Subject: [Bioperl-l] more problems with blast Message-ID: <4C0DB75C.6010901@bii.a-star.edu.sg> hi guys, im sorry but i got another problem. So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: ---- MSG: no data for midline Query ------------------------------------------------------------ STACK: Error::throw STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 ---- so there are couple of places where the alignments look like the following (i put here only the problem part): --- Query ------------------------------------------------------------ Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 --- My code for running psiblast: ---- my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); system(@args) == 0 or die "system @args failed: $!"; my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); $blastreport=$report->next_result; ---- Thats not nice :) But how can i go around that stuff so i can get the file parsed? Greetings Dimitar -- Dimitar Kenanov Postdoctoral research fellow Protein Sequence Analysis Group Bioinformatics Institute A*STAR, Singapore tel: +65 6478 8514 From cjfields at illinois.edu Tue Jun 8 03:44:02 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 7 Jun 2010 22:44:02 -0500 Subject: [Bioperl-l] more problems with blast In-Reply-To: <4C0DB75C.6010901@bii.a-star.edu.sg> References: <4C0DB75C.6010901@bii.a-star.edu.sg> Message-ID: <37AA42E4-1783-47DA-853E-9D8C90FCFE81@illinois.edu> This parsing issue is due to changes in BLAST+, but should be fixed in the latest github code. Can you run a clean checkout and test this? chris On Jun 7, 2010, at 10:22 PM, Dimitar Kenanov wrote: > hi guys, > im sorry but i got another problem. > So in previous email i wrote about psiblast with '-in_pssm' problem, so i just ran psiblast myself with system and all the parameters needed. I got my output file which i gave to SearchIO and hoped i got around the problem but no :) The moment i used 'next_result' i get error: > ---- > MSG: no data for midline Query ------------------------------------------------------------ > STACK: Error::throw > STACK: Bio::Root::Root::throw /usr/lib64/perl5/site_perl/5.10.0/Bio/Root/Root.pm:368 > STACK: Bio::SearchIO::blast::next_result /usr/lib64/perl5/site_perl/5.10.0/Bio/SearchIO/blast.pm:1829 > ---- > > so there are couple of places where the alignments look like the following (i put here only the problem part): > --- > Query ------------------------------------------------------------ > > Sbjct 288 HWVNTMALSTDYALRTGAFEPAEASVNPQDLQGSLQELKERALSRYNLVRGQGPERLVSG 347 > --- > > My code for running psiblast: > ---- > my @args=("$$bl_alg -db $protdb -out $tmpout -num_threads 2 -seg yes -soft_masking TRUE -lcase_masking -num_iterations $$cycles -in_pssm $pssmtmp -out_pssm $pssmtmp -use_sw_tback -word_size 3 -gapopen 11 -gapextend 1 -window_size 40 -threshold 11 -evalue $$eval"); > system(@args) == 0 or die "system @args failed: $!"; > my $report=Bio::SearchIO->new(-format => 'blast', -file => $tmpout); > $blastreport=$report->next_result; > ---- > > Thats not nice :) But how can i go around that stuff so i can get the file parsed? > > Greetings > Dimitar > > -- > Dimitar Kenanov > Postdoctoral research fellow > Protein Sequence Analysis Group > Bioinformatics Institute > A*STAR, Singapore > tel: +65 6478 8514 > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Tue Jun 8 11:35:23 2010 From: jay at jays.net (Jay Hannah) Date: Tue, 8 Jun 2010 06:35:23 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <20100608104921.493F1422B7@smtp1.rs.github.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> Message-ID: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb > http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb > Author: Florent Angly > Date: 2010-06-08 (Tue, 08 Jun 2010) > > Merge branch 'master' of github.com:bioperl/bioperl-live I'm fascinated by these commits, and my git-fu is still weak. I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). Am I reading that correctly? I find that history very confusing. In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). git remote add rkhaja git://github.com/rkhaja/bioperl-live.git git fetch rkhaja git checkout -b rkhaja-merge rkhaja/master git rebase master git checkout master git merge rkhaja-merge git branch -d rkhaja-merge That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. Thanks, Jay Hannah seeker of git enlightenment http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 13:07:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 15:07:29 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276002449.6704.27.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 06:35 -0500, Jay Hannah wrote: > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. Yes, that's just what's happening here. > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. So the question if this is the "better" way of doing things depends on what you're aiming for. At Samba, we have decided in trying to keep the history linear by using the rebase method you outlined above. This is mostly based on the reasoning that nobody cares about our private git trees we have on our development machines. If you're actively developing code in multiple public branches, like e.g. the Linux kernel does, it might be interesting to preserve where these branches split and merge. Personally, I like the readable history the rebasing gives me. Additionally, if you write only a few patches, and pull often, you'll end up with a high "merge commit"/"real commit" ratio, aka "noise". :) Hope this helps, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From cjfields at illinois.edu Tue Jun 8 13:55:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 08:55:51 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 6:35 AM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live > > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. Yes, via git pull. > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? This is probably the best way, sure, to avoid those additional 'Merge branch' messages. The rebase is the key part, which is where one is just setting the current branch pointer to point to the same place as master HEAD. So, what would be the workflow for a simple commit like florent's? Or one from a topic branch? Maybe something to add to the 'Using git' page? > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah I think we all are :> chris From hlapp at drycafe.net Tue Jun 8 15:44:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Tue, 8 Jun 2010 11:44:46 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Tue Jun 8 15:59:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 8 Jun 2010 10:59:24 -0500 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <26543D06-6211-498D-A6BE-89E99705074C@illinois.edu> On Jun 8, 2010, at 10:44 AM, Hilmar Lapp wrote: > On Jun 8, 2010, at 7:35 AM, Jay Hannah wrote: > >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge > > > When this gets adopted and documented, it'd be really great to annotate each line with what it is motivated by (i.e., why do this), as otherwise this sequence reads rather obtuse to probably most people except the fully git initiated. > > -hilmar Good idea. Also, one of the key distinctions we also need to make clear is how branches differ on svn and git (and why it is easy to branch with git). However, I don't want to necessarily repeat documentation that is better described elsewhere, so maybe a brief explanation of the above with links to Pro Git (http://progit.org/book/) or other resources? Can't recommend that book enough... chris From kai.blin at biotech.uni-tuebingen.de Tue Jun 8 16:25:51 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Tue, 08 Jun 2010 18:25:51 +0200 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <1276014351.6704.36.camel@mikropc7.biotech.uni-tuebingen.de> On Tue, 2010-06-08 at 11:44 -0400, Hilmar Lapp wrote: > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git This adds rkhaja's github fork of bioperl-live as a remote. You only need to do this once per repository (read "checkout") and remote. If this was a new repository, it now has the "origin" remote pointing to where it was cloned from and the "rkhaja" remote pointing to rkhaja's fork. > > git fetch rkhaja This gets the changes from the rkhaja remote. If you want to keep a lot of different remotes up-to-date, I suggest using git remote update instead, which updates all the remotes. > > git checkout -b rkhaja-merge rkhaja/master This creates a new branch called "rkhaja-merge" based on the "master" branch in the "rkhaja" remote, and changes to that branch. > > git rebase master This basically removes all the patches from the current branch up to the point where it diverged from the "master" branch, forwards the current branch to the tip of the "master" branch and then reapplies all the patches it removed, so they're now on top of the "master" branch. This allows you to do a fast-forward push of them later (read, no need to do a merge commit). > > git checkout master This switches back to the master branch. > > git merge rkhaja-merge This now merges over the changes of the "rkhaja-merge" branch. As all of these changes are on top of the current branch, they can be fast-forwarded to, no merge commit is created. > > git branch -d rkhaja-merge This removes the rkhaja-merge branch, to clean up. git branch -d will refuse to delete a branch that has objects not in your current branch, forcing you to use git br -D instead if you really know what you're doing. > > When this gets adopted and documented, it'd be really great to > annotate each line with what it is motivated by (i.e., why do this), > as otherwise this sequence reads rather obtuse to probably most people > except the fully git initiated. HTH, Kai -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From florent.angly at gmail.com Tue Jun 8 23:53:56 2010 From: florent.angly at gmail.com (Florent Angly) Date: Wed, 09 Jun 2010 09:53:56 +1000 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> Message-ID: <4C0ED814.5070004@gmail.com> For the record, this is what I have been doing: I have my git clone to get my local git repository. I make changes to the BioPerl code, then git commit I make more changes, then git commit Regularly, I do git pull to keep my repository up-to-date Eventually, I git push my changes upstream. I am not too familiar with git but I think this is essentially the easy steps describes on the wiki. If it's better to explicitely make a new branch (not 'master'), let me know. I just don't see the advantage for me. Florent On 06/08/2010 09:35 PM, Jay Hannah wrote: > On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: > >> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >> Author: Florent Angly >> Date: 2010-06-08 (Tue, 08 Jun 2010) >> >> Merge branch 'master' of github.com:bioperl/bioperl-live >> > I'm fascinated by these commits, and my git-fu is still weak. > > I think what's happening here is that any time anyone commits anything fangly is merging those changes into his own repo, which he then merges back to bioperl/bioperl-live again. > > So fangly's procedure (whatever it is), is re-committing other people's commits? Making history twice as long with (empty?) "Merge branch 'master'" messages? The diff of these commits reports that fangly is the author of other people's changes(!) yet somehow git annotate still reports that t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday (correct). > > Am I reading that correctly? I find that history very confusing. > > In #moose they taught me to merge other people's commits using the procedure below. This is what I did yesterday to merge rkhaja/bioperl-live into bioperl/bioperl-live (per conversations in IRC). > > git remote add rkhaja git://github.com/rkhaja/bioperl-live.git > git fetch rkhaja > git checkout -b rkhaja-merge rkhaja/master > git rebase master > git checkout master > git merge rkhaja-merge > git branch -d rkhaja-merge > > That procedure did not create a "Merge branch 'master'" commit. So is that procedure cleaner than fangly's? Is it the rebase command that makes the difference? > > I'm not picking on fangly here, I'm simply struggling to improve my own git-fu. > > Thanks, > > Jay Hannah > seeker of git enlightenment > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From pengyu.ut at gmail.com Wed Jun 9 01:00:07 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 20:00:07 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? Message-ID: Hi, I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following command. blastn -task blastn -query first.fa -subject second.fa I tried the following code, which works like without the '-task blastn' option. Would you please let me know how to supply the option in Bio::Tools::Run::StandAloneBlastPlus? my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); my $result=$factory->bl2seq( -method=>'blastn', -query=> $seq1, -subject=> $seq2 ); $factory->cleanup; Thank you for you help! -- Regards, Peng From razi.khaja at gmail.com Wed Jun 9 01:18:07 2010 From: razi.khaja at gmail.com (Razi Khaja) Date: Tue, 8 Jun 2010 21:18:07 -0400 Subject: [Bioperl-l] Merge branch 'master' ? In-Reply-To: <4C0ED814.5070004@gmail.com> References: <20100608104921.493F1422B7@smtp1.rs.github.com> <506F0342-4CE8-4965-9BD9-B595C0E751E2@jays.net> <4C0ED814.5070004@gmail.com> Message-ID: This is awesome! Looks like my contributions became a topic of conversation overnight. Razi On Tue, Jun 8, 2010 at 7:53 PM, Florent Angly wrote: > For the record, this is what I have been doing: > I have my git clone to get my local git repository. > I make changes to the BioPerl code, then git commit > I make more changes, then git commit > Regularly, I do git pull to keep my repository up-to-date > Eventually, I git push my changes upstream. > > I am not too familiar with git but I think this is essentially the easy > steps describes on the wiki. If it's better to explicitely make a new branch > (not 'master'), let me know. I just don't see the advantage for me. > > Florent > > > > On 06/08/2010 09:35 PM, Jay Hannah wrote: > >> On Jun 8, 2010, at 5:49 AM, noreply at github.com wrote: >> >> >>> Commit: 0e70e88a76d638d9f0406643c37691bb20d60ceb >>> >>> http://github.com/bioperl/bioperl-live/commit/0e70e88a76d638d9f0406643c37691bb20d60ceb >>> Author: Florent Angly >>> Date: 2010-06-08 (Tue, 08 Jun 2010) >>> >>> Merge branch 'master' of github.com:bioperl/bioperl-live >>> >>> >> I'm fascinated by these commits, and my git-fu is still weak. >> >> I think what's happening here is that any time anyone commits anything >> fangly is merging those changes into his own repo, which he then merges back >> to bioperl/bioperl-live again. >> >> So fangly's procedure (whatever it is), is re-committing other people's >> commits? Making history twice as long with (empty?) "Merge branch 'master'" >> messages? The diff of these commits reports that fangly is the author of >> other people's changes(!) yet somehow git annotate still reports that >> t/data/ZABJ4EA7014.CH878695.1.blast.txt was authored by Razi Khaja yesterday >> (correct). >> >> Am I reading that correctly? I find that history very confusing. >> >> In #moose they taught me to merge other people's commits using the >> procedure below. This is what I did yesterday to merge rkhaja/bioperl-live >> into bioperl/bioperl-live (per conversations in IRC). >> >> git remote add rkhaja git://github.com/rkhaja/bioperl-live.git >> git fetch rkhaja >> git checkout -b rkhaja-merge rkhaja/master >> git rebase master >> git checkout master >> git merge rkhaja-merge >> git branch -d rkhaja-merge >> >> That procedure did not create a "Merge branch 'master'" commit. So is that >> procedure cleaner than fangly's? Is it the rebase command that makes the >> difference? >> >> I'm not picking on fangly here, I'm simply struggling to improve my own >> git-fu. >> >> Thanks, >> >> Jay Hannah >> seeker of git enlightenment >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Wed Jun 9 01:28:03 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 13:28:03 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Have you read the docs? http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Wednesday, 9 June 2010 1:00 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > Hi, > > I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > command. > > blastn -task blastn -query first.fa -subject second.fa > > > I tried the following code, which works like without the '-task > blastn' option. Would you please let me know how to supply the option > in Bio::Tools::Run::StandAloneBlastPlus? > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > my $result=$factory->bl2seq( > -method=>'blastn', > -query=> $seq1, > -subject=> $seq2 > ); > $factory->cleanup; > > Thank you for you help! > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Wed Jun 9 02:20:39 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 21:20:39 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell wrote: > Have you read the docs? > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq Yes. But they don't say how to supply option '-task blastn' to blastn. I tried my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); But it doesn't work. > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > --Russell > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> To: bioperl-l at lists.open-bio.org >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> Hi, >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> command. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> I tried the following code, which works like without the '-task >> blastn' option. Would you please let me know how to supply the option >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> ? my $result=$factory->bl2seq( >> ? ? -method=>'blastn', >> ? ? -query=> $seq1, >> ? ? -subject=> $seq2 >> ? ); >> ? $factory->cleanup; >> >> Thank you for you help! >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 03:09:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:09:33 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Why are you trying to supply option '-task blastn' ?? I think the docs make it fairly clear that this is not one of the available parameters. The option " -method => 'blastn' " (as detailed in the docs) is the one to use. http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html # create a factory: $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); # do a bl2seq $fac->bl2seq( -method => 'blastn', -query => $seq_object_1, -subject => $seq_object_2 ); Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 2:21 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > wrote: > > Have you read the docs? > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > > Yes. But they don't say how to supply option '-task blastn' to blastn. I > tried > > my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); > > But it doesn't work. > > > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > > I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. > > > --Russell > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> To: bioperl-l at lists.open-bio.org > >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> Hi, > >> > >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following > >> command. > >> > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> > >> I tried the following code, which works like without the '-task > >> blastn' option. Would you please let me know how to supply the option > >> in Bio::Tools::Run::StandAloneBlastPlus? > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> ? my $result=$factory->bl2seq( > >> ? ? -method=>'blastn', > >> ? ? -query=> $seq1, > >> ? ? -subject=> $seq2 > >> ? ); > >> ? $factory->cleanup; > >> > >> Thank you for you help! > >> > >> -- > >> Regards, > >> Peng > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Wed Jun 9 03:12:12 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:12:12 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: See the help page of blastn. By default blastn use the option "-task megablast", which is less sensitive than the option "-task blastn". $ blastn -help .... -task Task to execute Default = `megablast' ... On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell wrote: > Why are you trying to supply option '-task blastn' ?? > I think the docs make it fairly clear that this is not one of the available parameters. > The option " -method => 'blastn' " (as detailed in the docs) is the one to use. > http://doc.bioperl.org/releases/bioperl-current/bioperl-run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > # create a factory: > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > # do a bl2seq > ?$fac->bl2seq( -method => 'blastn', > ? ? ? ? ? ? ? -query => $seq_object_1, > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is completely broken (which is possible as it's development code) something similar to the example should work. > > --Russell > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> wrote: >> > Have you read the docs? >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. I >> tried >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(-task='blastn'); >> >> But it doesn't work. >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my problem. >> >> > --Russell >> > >> >> -----Original Message----- >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> To: bioperl-l at lists.open-bio.org >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> Hi, >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the following >> >> command. >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> blastn' option. Would you please let me know how to supply the option >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> ? my $result=$factory->bl2seq( >> >> ? ? -method=>'blastn', >> >> ? ? -query=> $seq1, >> >> ? ? -subject=> $seq2 >> >> ? ); >> >> ? $factory->cleanup; >> >> >> >> Thank you for you help! >> >> >> >> -- >> >> Regards, >> >> Peng >> >> _______________________________________________ >> >> Bioperl-l mailing list >> >> Bioperl-l at lists.open-bio.org >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > ======================================================================= >> > Attention: The information contained in this message and/or attachments >> > from AgResearch Limited is intended only for the persons or entities >> > to which it is addressed and may contain confidential and/or privileged >> > material. Any review, retransmission, dissemination or other use of, or >> > taking of any action in reliance upon, this information by persons or >> > entities other than the intended recipients is prohibited by AgResearch >> > Limited. If you have received this message in error, please notify the >> > sender immediately. >> > ======================================================================= >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 03:31:54 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:31:54 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:12 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > See the help page of blastn. By default blastn use the option "-task > megablast", which is less sensitive than the option "-task blastn". > > $ blastn -help > .... > -task 'megablast' 'vecscreen' > > Task to execute > Default = `megablast' > ... > > On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > wrote: > > Why are you trying to supply option '-task blastn' ?? > > I think the docs make it fairly clear that this is not one of the > available parameters. > > The option " -method => 'blastn' " (as detailed in the docs) is the one > to use. > > http://doc.bioperl.org/releases/bioperl-current/bioperl- > run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > > > > # create a factory: > > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > > > > # do a bl2seq > > ?$fac->bl2seq( -method => 'blastn', > > ? ? ? ? ? ? ? -query => $seq_object_1, > > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > > > > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is > completely broken (which is possible as it's development code) something > similar to the example should work. > > > > --Russell > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> wrote: > >> > Have you read the docs? > >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> > >> Yes. But they don't say how to supply option '-task blastn' to blastn. > I > >> tried > >> > >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > task='blastn'); > >> > >> But it doesn't work. > >> > >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? > >> > >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > problem. > >> > >> > --Russell > >> > > >> >> -----Original Message----- > >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> To: bioperl-l at lists.open-bio.org > >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> Hi, > >> >> > >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > following > >> >> command. > >> >> > >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> > >> >> > >> >> I tried the following code, which works like without the '-task > >> >> blastn' option. Would you please let me know how to supply the > option > >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> ? my $result=$factory->bl2seq( > >> >> ? ? -method=>'blastn', > >> >> ? ? -query=> $seq1, > >> >> ? ? -subject=> $seq2 > >> >> ? ); > >> >> ? $factory->cleanup; > >> >> > >> >> Thank you for you help! > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> >> _______________________________________________ > >> >> Bioperl-l mailing list > >> >> Bioperl-l at lists.open-bio.org > >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > ======================================================================= > >> > Attention: The information contained in this message and/or > attachments > >> > from AgResearch Limited is intended only for the persons or entities > >> > to which it is addressed and may contain confidential and/or > privileged > >> > material. Any review, retransmission, dissemination or other use of, > or > >> > taking of any action in reliance upon, this information by persons or > >> > entities other than the intended recipients is prohibited by > AgResearch > >> > Limited. If you have received this message in error, please notify > the > >> > sender immediately. > >> > > ======================================================================= > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From pengyu.ut at gmail.com Wed Jun 9 03:36:50 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 8 Jun 2010 22:36:50 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: I made a wrapper. Then I call bl2seq in bioperl. The result changes, which means bioperl call blastn rather than bl2seq in the command line. The results are consistent between bioperl and blastn command line. $ cat `which blastn` #!/usr/bin/env bash /myinstallation/blastn -task blastn $@ On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell wrote: > Without digging thru the code, I think the developer can call the parameters whatever he likes and if he wants to use "-method " instead of "-task " there's probably a good reason (right MAJ?) > > If you write code as in the docs, does it give you the same results as when you run bl2seq manually from the command line? > When you run it via BioPerl, does " -method => 'blastn' " give you a different result to " -method => 'megablast' " or " -method => 'dc-megablast' " > > > > --Russell > > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> To: Smithies, Russell >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> See the help page of blastn. By default blastn use the option "-task >> megablast", which is less sensitive than the option "-task blastn". >> >> $ blastn -help >> .... >> ?-task > ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> ? ? ?Task to execute >> ? ? ?Default = `megablast' >> ... >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> wrote: >> > Why are you trying to supply option '-task blastn' ?? >> > I think the docs make it fairly clear that this is not one of the >> available parameters. >> > The option " -method => 'blastn' " (as detailed in the docs) is the one >> to use. >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> > >> > # create a factory: >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> > >> > # do a bl2seq >> > ?$fac->bl2seq( -method => 'blastn', >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus is >> completely broken (which is possible as it's development code) something >> similar to the example should work. >> > >> > --Russell >> > >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> To: Smithies, Russell >> >> Cc: bioperl-l at lists.open-bio.org >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> wrote: >> >> > Have you read the docs? >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> Yes. But they don't say how to supply option '-task blastn' to blastn. >> I >> >> tried >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> task='blastn'); >> >> >> >> But it doesn't work. >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq objects? >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my >> problem. >> >> >> >> > --Russell >> >> > >> >> >> -----Original Message----- >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> Hi, >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the >> following >> >> >> command. >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the '-task >> >> >> blastn' option. Would you please let me know how to supply the >> option >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> ? my $result=$factory->bl2seq( >> >> >> ? ? -method=>'blastn', >> >> >> ? ? -query=> $seq1, >> >> >> ? ? -subject=> $seq2 >> >> >> ? ); >> >> >> ? $factory->cleanup; >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> >> _______________________________________________ >> >> >> Bioperl-l mailing list >> >> >> Bioperl-l at lists.open-bio.org >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > >> ======================================================================= >> >> > Attention: The information contained in this message and/or >> attachments >> >> > from AgResearch Limited is intended only for the persons or entities >> >> > to which it is addressed and may contain confidential and/or >> privileged >> >> > material. Any review, retransmission, dissemination or other use of, >> or >> >> > taking of any action in reliance upon, this information by persons or >> >> > entities other than the intended recipients is prohibited by >> AgResearch >> >> > Limited. If you have received this message in error, please notify >> the >> >> > sender immediately. >> >> > >> ======================================================================= >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > -- Regards, Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 03:47:25 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:47:25 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> I really think you need to spend more time reading and less time emailing. http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 The BLAST+ package includes the ability to compare two or more sequences to each other in each of the search programs. Using the -subject option instead of the -db will cause any of the search programs to behave as a BLAST 2 sequences program. This eliminates the need for the BLAST 2 sequences utility (bl2seq) included in the traditional BLAST package. While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a wrapper as there's no longer a bl2seq executable as there was with the older version of BLAST. --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:37 p.m. > To: Smithies, Russell > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I made a wrapper. Then I call bl2seq in bioperl. The result changes, > which means bioperl call blastn rather than bl2seq in the command > line. The results are consistent between bioperl and blastn command > line. > > $ cat `which blastn` > #!/usr/bin/env bash > > /myinstallation/blastn -task blastn $@ > > > On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > wrote: > > Without digging thru the code, I think the developer can call the > parameters whatever he likes and if he wants to use "-method " instead of > "-task " there's probably a good reason (right MAJ?) > > > > If you write code as in the docs, does it give you the same results as > when you run bl2seq manually from the command line? > > When you run it via BioPerl, does " -method => 'blastn' " give you a > different result to " -method => 'megablast' " or " -method => 'dc- > megablast' " > > > > > > > > --Russell > > > > > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> See the help page of blastn. By default blastn use the option "-task > >> megablast", which is less sensitive than the option "-task blastn". > >> > >> $ blastn -help > >> .... > >> ?-task megablast' > >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> ? ? ?Task to execute > >> ? ? ?Default = `megablast' > >> ... > >> > >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> wrote: > >> > Why are you trying to supply option '-task blastn' ?? > >> > I think the docs make it fairly clear that this is not one of the > >> available parameters. > >> > The option " -method => 'blastn' " (as detailed in the docs) is the > one > >> to use. > >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> > > >> > # create a factory: > >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> > > >> > # do a bl2seq > >> > ?$fac->bl2seq( -method => 'blastn', > >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> > > >> > Unless I've missed something and Bio::Tools::Run::StandAloneBlastPlus > is > >> completely broken (which is possible as it's development code) > something > >> similar to the example should work. > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> wrote: > >> >> > Have you read the docs? > >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> > >> >> Yes. But they don't say how to supply option '-task blastn' to > blastn. > >> I > >> >> tried > >> >> > >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> task='blastn'); > >> >> > >> >> But it doesn't work. > >> >> > >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > objects? > >> >> > >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> problem. > >> >> > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn option > from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> Hi, > >> >> >> > >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> following > >> >> >> command. > >> >> >> > >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> > >> >> >> > >> >> >> I tried the following code, which works like without the '-task > >> >> >> blastn' option. Would you please let me know how to supply the > >> option > >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> ? my $result=$factory->bl2seq( > >> >> >> ? ? -method=>'blastn', > >> >> >> ? ? -query=> $seq1, > >> >> >> ? ? -subject=> $seq2 > >> >> >> ? ); > >> >> >> ? $factory->cleanup; > >> >> >> > >> >> >> Thank you for you help! > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> >> _______________________________________________ > >> >> >> Bioperl-l mailing list > >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> > > >> ======================================================================= > >> >> > Attention: The information contained in this message and/or > >> attachments > >> >> > from AgResearch Limited is intended only for the persons or > entities > >> >> > to which it is addressed and may contain confidential and/or > >> privileged > >> >> > material. Any review, retransmission, dissemination or other use > of, > >> or > >> >> > taking of any action in reliance upon, this information by persons > or > >> >> > entities other than the intended recipients is prohibited by > >> AgResearch > >> >> > Limited. If you have received this message in error, please notify > >> the > >> >> > sender immediately. > >> >> > > >> ======================================================================= > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 03:58:09 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 15:58:09 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> I've lost track of what your main problem is, please restate your original question? I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or what part of the documentation is incorrect? --Russell > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 3:53 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I knew this I should use blastn as bl2seq command is not available in > BLAST+. I'm not sure what you think I should read? > > On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > wrote: > > I really think you need to spend more time reading and less time > emailing. > > > > http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > > The BLAST+ package includes the ability to compare two or more sequences > to each other in each of the search programs. Using the -subject ?option > instead of the -db will cause any of the search programs to behave as a > BLAST 2 sequences program. This eliminates the need for the BLAST 2 > sequences utility (bl2seq) included in the traditional BLAST package. > > > > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just a > wrapper as there's no longer a bl2seq executable as there was with the > older version of BLAST. > > > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> To: Smithies, Russell > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I made a wrapper. Then I call bl2seq in bioperl. The result changes, > >> which means bioperl call blastn rather than bl2seq in the command > >> line. The results are consistent between bioperl and blastn command > >> line. > >> > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> wrote: > >> > Without digging thru the code, I think the developer can call the > >> parameters whatever he likes and if he wants to use "-method " instead > of > >> "-task " there's probably a good reason (right MAJ?) > >> > > >> > If you write code as in the docs, does it give you the same results > as > >> when you run bl2seq manually from the command line? > >> > When you run it via BioPerl, does " -method => 'blastn' " give you a > >> different result to " -method => 'megablast' " or " -method => 'dc- > >> megablast' " > >> > > >> > > >> > > >> > --Russell > >> > > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> To: Smithies, Russell > >> >> Cc: bioperl-l at lists.open-bio.org > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> See the help page of blastn. By default blastn use the option "-task > >> >> megablast", which is less sensitive than the option "-task blastn". > >> >> > >> >> $ blastn -help > >> >> .... > >> >> ?-task >> megablast' > >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> ? ? ?Task to execute > >> >> ? ? ?Default = `megablast' > >> >> ... > >> >> > >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> wrote: > >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> > I think the docs make it fairly clear that this is not one of the > >> >> available parameters. > >> >> > The option " -method => 'blastn' " (as detailed in the docs) is > the > >> one > >> >> to use. > >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> > > >> >> > # create a factory: > >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> > > >> >> > # do a bl2seq > >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> > > >> >> > Unless I've missed something and > Bio::Tools::Run::StandAloneBlastPlus > >> is > >> >> completely broken (which is possible as it's development code) > >> something > >> >> similar to the example should work. > >> >> > > >> >> > --Russell > >> >> > > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Have you read the docs? > >> >> >> > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> > >> >> >> Yes. But they don't say how to supply option '-task blastn' to > >> blastn. > >> >> I > >> >> >> tried > >> >> >> > >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> task='blastn'); > >> >> >> > >> >> >> But it doesn't work. > >> >> >> > >> >> >> > Do query and subject ($seq1 and $seq2) need to be Bio::Seq > >> objects? > >> >> >> > >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is not my > >> >> problem. > >> >> >> > >> >> >> > --Russell > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > option > >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> Hi, > >> >> >> >> > >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to run the > >> >> following > >> >> >> >> command. > >> >> >> >> > >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> > >> >> >> >> > >> >> >> >> I tried the following code, which works like without the '- > task > >> >> >> >> blastn' option. Would you please let me know how to supply the > >> >> option > >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> ? ); > >> >> >> >> ? $factory->cleanup; > >> >> >> >> > >> >> >> >> Thank you for you help! > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> >> _______________________________________________ > >> >> >> >> Bioperl-l mailing list > >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> > > >> >> > ======================================================================= > >> >> >> > Attention: The information contained in this message and/or > >> >> attachments > >> >> >> > from AgResearch Limited is intended only for the persons or > >> entities > >> >> >> > to which it is addressed and may contain confidential and/or > >> >> privileged > >> >> >> > material. Any review, retransmission, dissemination or other > use > >> of, > >> >> or > >> >> >> > taking of any action in reliance upon, this information by > persons > >> or > >> >> >> > entities other than the intended recipients is prohibited by > >> >> AgResearch > >> >> >> > Limited. If you have received this message in error, please > notify > >> >> the > >> >> >> > sender immediately. > >> >> >> > > >> >> > ======================================================================= > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From Russell.Smithies at agresearch.co.nz Wed Jun 9 04:10:46 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 9 Jun 2010 16:10:46 +1200 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> > -----Original Message----- > From: Peng Yu [mailto:pengyu.ut at gmail.com] > Sent: Wednesday, 9 June 2010 4:10 p.m. > To: Smithies, Russell > Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from > Bio::Tools::Run::StandAloneBlastPlus? > > I think it is better to document the mapping between blast options and > bioperl options. I searched 'task', but I don't find anything. Thank > you for letting me know. > > On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell > wrote: > > Bioperl's equivalent is blastn -task blastn -query first.fa -subject > second.fa > > We've just used 'method' instead of 'task'. > > > > You can always use the legacy_blast.pl script that comes with blast+ > then you can just use your old bl2seq commands. > > > > --Russell > > > >> -----Original Message----- > >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> Sent: Wednesday, 9 June 2010 4:03 p.m. > >> To: Smithies, Russell > >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > from > >> Bio::Tools::Run::StandAloneBlastPlus? > >> > >> I've solved my problem by using the wrapper. Note that this is a hack > >> as it is not done in bioperl. > >> $ cat `which blastn` > >> #!/usr/bin/env bash > >> > >> /myinstallation/blastn -task blastn $@ > >> > >> > >> Anyway, I restate my original problem below. > >> > >> bioperl's bl2seq by default is equivalent to the following command. > >> blastn -query first.fa -subject second.fa > >> > >> I want to add the option '-task blastn'. > >> blastn -task blastn -query first.fa -subject second.fa > >> > >> But I don't find such option in bioperl's bl2seq. > >> > >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell > >> wrote: > >> > I've lost track of what your main problem is, please restate your > >> original question? > >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or > what > >> part of the documentation is incorrect? > >> > > >> > > >> > --Russell > >> > > >> > > >> >> -----Original Message----- > >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. > >> >> To: Smithies, Russell > >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option > >> from > >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> > >> >> I knew this I should use blastn as bl2seq command is not available > in > >> >> BLAST+. I'm not sure what you think I should read? > >> >> > >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell > >> >> wrote: > >> >> > I really think you need to spend more time reading and less time > >> >> emailing. > >> >> > > >> >> > > >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 > >> >> > The BLAST+ package includes the ability to compare two or more > >> sequences > >> >> to each other in each of the search programs. Using the -subject > >> ?option > >> >> instead of the -db will cause any of the search programs to behave > as a > >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 > >> >> sequences utility (bl2seq) included in the traditional BLAST > package. > >> >> > > >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just > a > >> >> wrapper as there's no longer a bl2seq executable as there was with > the > >> >> older version of BLAST. > >> >> > > >> >> > > >> >> > --Russell > >> >> > > >> >> >> -----Original Message----- > >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. > >> >> >> To: Smithies, Russell > >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > option > >> >> from > >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> > >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result > changes, > >> >> >> which means bioperl call blastn rather than bl2seq in the command > >> >> >> line. The results are consistent between bioperl and blastn > command > >> >> >> line. > >> >> >> > >> >> >> $ cat `which blastn` > >> >> >> #!/usr/bin/env bash > >> >> >> > >> >> >> /myinstallation/blastn -task blastn $@ > >> >> >> > >> >> >> > >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell > >> >> >> wrote: > >> >> >> > Without digging thru the code, I think the developer can call > the > >> >> >> parameters whatever he likes and if he wants to use "-method " > >> instead > >> >> of > >> >> >> "-task " there's probably a good reason (right MAJ?) > >> >> >> > > >> >> >> > If you write code as in the docs, does it give you the same > >> results > >> >> as > >> >> >> when you run bl2seq manually from the command line? > >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give > you > >> a > >> >> >> different result to " -method => 'megablast' " or " -method => > 'dc- > >> >> >> megablast' " > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > --Russell > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> >> -----Original Message----- > >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. > >> >> >> >> To: Smithies, Russell > >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn > >> option > >> >> >> from > >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> > >> >> >> >> See the help page of blastn. By default blastn use the option > "- > >> task > >> >> >> >> megablast", which is less sensitive than the option "-task > >> blastn". > >> >> >> >> > >> >> >> >> $ blastn -help > >> >> >> >> .... > >> >> >> >> ?-task 'dc- > >> >> >> megablast' > >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > > >> >> >> >> ? ? ?Task to execute > >> >> >> >> ? ? ?Default = `megablast' > >> >> >> >> ... > >> >> >> >> > >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell > >> >> >> >> wrote: > >> >> >> >> > Why are you trying to supply option '-task blastn' ?? > >> >> >> >> > I think the docs make it fairly clear that this is not one > of > >> the > >> >> >> >> available parameters. > >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) > is > >> >> the > >> >> >> one > >> >> >> >> to use. > >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- > >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html > >> >> >> >> > > >> >> >> >> > # create a factory: > >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); > >> >> >> >> > > >> >> >> >> > # do a bl2seq > >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', > >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, > >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); > >> >> >> >> > > >> >> >> >> > Unless I've missed something and > >> >> Bio::Tools::Run::StandAloneBlastPlus > >> >> >> is > >> >> >> >> completely broken (which is possible as it's development code) > >> >> >> something > >> >> >> >> similar to the example should work. > >> >> >> >> > > >> >> >> >> > --Russell > >> >> >> >> > > >> >> >> >> > > >> >> >> >> >> -----Original Message----- > >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] > >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. > >> >> >> >> >> To: Smithies, Russell > >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org > >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task > blastn > >> >> option > >> >> >> >> from > >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> > >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell > >> >> >> >> >> wrote: > >> >> >> >> >> > Have you read the docs? > >> >> >> >> >> > > http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq > >> >> >> >> >> > >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' > to > >> >> >> blastn. > >> >> >> >> I > >> >> >> >> >> tried > >> >> >> >> >> > >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- > >> >> >> >> task='blastn'); > >> >> >> >> >> > >> >> >> >> >> But it doesn't work. > >> >> >> >> >> > >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be > Bio::Seq > >> >> >> objects? > >> >> >> >> >> > >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is > not > >> my > >> >> >> >> problem. > >> >> >> >> >> > >> >> >> >> >> > --Russell > >> >> >> >> >> > > >> >> >> >> >> >> -----Original Message----- > >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl- > >> l- > >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu > >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. > >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org > >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn > >> >> option > >> >> >> from > >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> Hi, > >> >> >> >> >> >> > >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to > run > >> the > >> >> >> >> following > >> >> >> >> >> >> command. > >> >> >> >> >> >> > >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa > >> >> >> >> >> >> > >> >> >> >> >> >> > >> >> >> >> >> >> I tried the following code, which works like without the > '- > >> >> task > >> >> >> >> >> >> blastn' option. Would you please let me know how to > supply > >> the > >> >> >> >> option > >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? > >> >> >> >> >> >> > >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- > >new(); > >> >> >> >> >> >> ? my $result=$factory->bl2seq( > >> >> >> >> >> >> ? ? -method=>'blastn', > >> >> >> >> >> >> ? ? -query=> $seq1, > >> >> >> >> >> >> ? ? -subject=> $seq2 > >> >> >> >> >> >> ? ); > >> >> >> >> >> >> ? $factory->cleanup; > >> >> >> >> >> >> > >> >> >> >> >> >> Thank you for you help! > >> >> >> >> >> >> > >> >> >> >> >> >> -- > >> >> >> >> >> >> Regards, > >> >> >> >> >> >> Peng > >> >> >> >> >> >> _______________________________________________ > >> >> >> >> >> >> Bioperl-l mailing list > >> >> >> >> >> >> Bioperl-l at lists.open-bio.org > >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > Attention: The information contained in this message > and/or > >> >> >> >> attachments > >> >> >> >> >> > from AgResearch Limited is intended only for the persons > or > >> >> >> entities > >> >> >> >> >> > to which it is addressed and may contain confidential > and/or > >> >> >> >> privileged > >> >> >> >> >> > material. Any review, retransmission, dissemination or > other > >> >> use > >> >> >> of, > >> >> >> >> or > >> >> >> >> >> > taking of any action in reliance upon, this information > by > >> >> persons > >> >> >> or > >> >> >> >> >> > entities other than the intended recipients is prohibited > by > >> >> >> >> AgResearch > >> >> >> >> >> > Limited. If you have received this message in error, > please > >> >> notify > >> >> >> >> the > >> >> >> >> >> > sender immediately. > >> >> >> >> >> > > >> >> >> >> > >> >> > ======================================================================= > >> >> >> >> >> > > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> -- > >> >> >> >> >> Regards, > >> >> >> >> >> Peng > >> >> >> >> > > >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> -- > >> >> >> >> Regards, > >> >> >> >> Peng > >> >> >> > > >> >> >> > >> >> >> > >> >> >> > >> >> >> -- > >> >> >> Regards, > >> >> >> Peng > >> >> > > >> >> > >> >> > >> >> > >> >> -- > >> >> Regards, > >> >> Peng > >> > > >> > >> > >> > >> -- > >> Regards, > >> Peng > > > > > > -- > Regards, > Peng From armendarez77 at hotmail.com Wed Jun 9 12:38:24 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Wed, 9 Jun 2010 05:38:24 -0700 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? Thanks again, Veronica Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 From: David.Messina at sbc.su.se Date: Mon, 7 Jun 2010 22:38:48 +0200 CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org To: armendarez77 at hotmail.com On Jun 7, 2010, at 10:32 PM, wrote:Hello, My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? No, it should be git://github.com/bioperl/bioperl-dev.git On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. Dave _________________________________________________________________ Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_1 From cjfields at illinois.edu Wed Jun 9 12:44:54 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 07:44:54 -0500 Subject: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 In-Reply-To: References: , <29FDC993-63E5-470A-A6CF-20F83E823E4D@sbc.su.se>, , <11106D82-B504-430E-9B98-069271AAE4E3@illinois.edu>, , , <98F496B4-E2FA-4B8C-8534-6E21BEE56045@sbc.su.se> Message-ID: <7A526D4B-AED6-4957-B2F3-CA22D5578BAB@illinois.edu> I'm thinking of releasing it separately as a focused package (wrappers, parsers and all). That way it's not reliant on releases of BioPerl for updates. chris On Jun 9, 2010, at 7:38 AM, wrote: > Just wanted to say thanks for your suggestions, but my system admin was unable to install the bioperl-dev due to it having too many requirements. However, I found a temporary work around using 'PRIMER_PICK_ANYWAY' and then parsing those results based on my own primer specifications. > > When will the next stable release of bioperl that includes B:T:R:Primer3Redux and B:T:Primer3Redux? > > Thanks again, > > Veronica > > Subject: Re: [Bioperl-l] Bio::Tools::Run::Primer3 vs Web Primer 3 > From: David.Messina at sbc.su.se > Date: Mon, 7 Jun 2010 22:38:48 +0200 > CC: cjfields at illinois.edu; bioperl-l at lists.open-bio.org > To: armendarez77 at hotmail.com > > > On Jun 7, 2010, at 10:32 PM, wrote: > > Hello, > > My linux system administrator is getting the following errors while trying to download bioperl-dev from the git repository. Is he using the correct git path? > > No, it should be git://github.com/bioperl/bioperl-dev.git > > On the other hand, if he doesn't want to mess with git, he can just click the "download source" button (right underneath the search box on the upper right of the page) to get a tarball. > > Dave > > > Hotmail has tools for the New Busy. Search, chat and e-mail from your inbox. Learn more. From pengyu.ut at gmail.com Wed Jun 9 14:51:31 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Wed, 9 Jun 2010 09:51:31 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: My original code use -method=>'blastn' as Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent to blast+'s command line option -task blastn. On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell wrote: > > >> -----Original Message----- >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> Sent: Wednesday, 9 June 2010 4:10 p.m. >> To: Smithies, Russell >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >> Bio::Tools::Run::StandAloneBlastPlus? >> >> I think it is better to document the mapping between blast options and >> bioperl options. I searched 'task', but I don't find anything. Thank >> you for letting me know. >> >> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >> wrote: >> > Bioperl's equivalent is blastn -task blastn -query first.fa -subject >> second.fa >> > We've just used 'method' instead of 'task'. >> > >> > You can always use the legacy_blast.pl script that comes with blast+ >> then you can just use your old bl2seq commands. >> > >> > --Russell >> > >> >> -----Original Message----- >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> Sent: Wednesday, 9 June 2010 4:03 p.m. >> >> To: Smithies, Russell >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> from >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> I've solved my problem by using the wrapper. Note that this is a hack >> >> as it is not done in bioperl. >> >> $ cat `which blastn` >> >> #!/usr/bin/env bash >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> Anyway, I restate my original problem below. >> >> >> >> bioperl's bl2seq by default is equivalent to the following command. >> >> blastn -query first.fa -subject second.fa >> >> >> >> I want to add the option '-task blastn'. >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> But I don't find such option in bioperl's bl2seq. >> >> >> >> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >> >> wrote: >> >> > I've lost track of what your main problem is, please restate your >> >> original question? >> >> > I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >> what >> >> part of the documentation is incorrect? >> >> > >> >> > >> >> > --Russell >> >> > >> >> > >> >> >> -----Original Message----- >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> Sent: Wednesday, 9 June 2010 3:53 p.m. >> >> >> To: Smithies, Russell >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >> >> from >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> I knew this I should use blastn as bl2seq command is not available >> in >> >> >> BLAST+. I'm not sure what you think I should read? >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >> >> >> wrote: >> >> >> > I really think you need to spend more time reading and less time >> >> >> emailing. >> >> >> > >> >> >> > >> >> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >> >> >> > The BLAST+ package includes the ability to compare two or more >> >> sequences >> >> >> to each other in each of the search programs. Using the -subject >> >> ?option >> >> >> instead of the -db will cause any of the search programs to behave >> as a >> >> >> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >> >> >> sequences utility (bl2seq) included in the traditional BLAST >> package. >> >> >> > >> >> >> > While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >> a >> >> >> wrapper as there's no longer a bl2seq executable as there was with >> the >> >> >> older version of BLAST. >> >> >> > >> >> >> > >> >> >> > --Russell >> >> >> > >> >> >> >> -----Original Message----- >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> Sent: Wednesday, 9 June 2010 3:37 p.m. >> >> >> >> To: Smithies, Russell >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> option >> >> >> from >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> I made a wrapper. Then I call bl2seq in bioperl. The result >> changes, >> >> >> >> which means bioperl call blastn rather than bl2seq in the command >> >> >> >> line. The results are consistent between bioperl and blastn >> command >> >> >> >> line. >> >> >> >> >> >> >> >> $ cat `which blastn` >> >> >> >> #!/usr/bin/env bash >> >> >> >> >> >> >> >> /myinstallation/blastn -task blastn $@ >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >> >> >> >> wrote: >> >> >> >> > Without digging thru the code, I think the developer can call >> the >> >> >> >> parameters whatever he likes and if he wants to use "-method " >> >> instead >> >> >> of >> >> >> >> "-task " there's probably a good reason (right MAJ?) >> >> >> >> > >> >> >> >> > If you write code as in the docs, does it give you the same >> >> results >> >> >> as >> >> >> >> when you run bl2seq manually from the command line? >> >> >> >> > When you run it via BioPerl, does " -method => 'blastn' " give >> you >> >> a >> >> >> >> different result to " -method => 'megablast' " or " -method => >> 'dc- >> >> >> >> megablast' " >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> > --Russell >> >> >> >> > >> >> >> >> > >> >> >> >> > >> >> >> >> >> -----Original Message----- >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> Sent: Wednesday, 9 June 2010 3:12 p.m. >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >> >> option >> >> >> >> from >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> See the help page of blastn. By default blastn use the option >> "- >> >> task >> >> >> >> >> megablast", which is less sensitive than the option "-task >> >> blastn". >> >> >> >> >> >> >> >> >> >> $ blastn -help >> >> >> >> >> .... >> >> >> >> >> ?-task > 'dc- >> >> >> >> megablast' >> >> >> >> >> ? ? ? ? ? ? ? ? ? 'megablast' 'vecscreen' > >> >> >> >> >> ? ? ?Task to execute >> >> >> >> >> ? ? ?Default = `megablast' >> >> >> >> >> ... >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >> >> >> >> >> wrote: >> >> >> >> >> > Why are you trying to supply option '-task blastn' ?? >> >> >> >> >> > I think the docs make it fairly clear that this is not one >> of >> >> the >> >> >> >> >> available parameters. >> >> >> >> >> > The option " -method => 'blastn' " (as detailed in the docs) >> is >> >> >> the >> >> >> >> one >> >> >> >> >> to use. >> >> >> >> >> > http://doc.bioperl.org/releases/bioperl-current/bioperl- >> >> >> >> >> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >> >> >> >> >> > >> >> >> >> >> > # create a factory: >> >> >> >> >> > ?$fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >> >> >> >> >> > >> >> >> >> >> > # do a bl2seq >> >> >> >> >> > ?$fac->bl2seq( -method => 'blastn', >> >> >> >> >> > ? ? ? ? ? ? ? -query => $seq_object_1, >> >> >> >> >> > ? ? ? ? ? ? ? -subject => $seq_object_2 ); >> >> >> >> >> > >> >> >> >> >> > Unless I've missed something and >> >> >> Bio::Tools::Run::StandAloneBlastPlus >> >> >> >> is >> >> >> >> >> completely broken (which is possible as it's development code) >> >> >> >> something >> >> >> >> >> similar to the example should work. >> >> >> >> >> > >> >> >> >> >> > --Russell >> >> >> >> >> > >> >> >> >> >> > >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> From: Peng Yu [mailto:pengyu.ut at gmail.com] >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 2:21 p.m. >> >> >> >> >> >> To: Smithies, Russell >> >> >> >> >> >> Cc: bioperl-l at lists.open-bio.org >> >> >> >> >> >> Subject: Re: [Bioperl-l] How to run blastn with -task >> blastn >> >> >> option >> >> >> >> >> from >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >> >> >> >> >> >> wrote: >> >> >> >> >> >> > Have you read the docs? >> >> >> >> >> >> > >> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >> >> >> >> >> >> >> >> >> >> >> >> Yes. But they don't say how to supply option '-task blastn' >> to >> >> >> >> blastn. >> >> >> >> >> I >> >> >> >> >> >> tried >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >> >> >> >> >> task='blastn'); >> >> >> >> >> >> >> >> >> >> >> >> But it doesn't work. >> >> >> >> >> >> >> >> >> >> >> >> > Do query and subject ($seq1 and $seq2) need to be >> Bio::Seq >> >> >> >> objects? >> >> >> >> >> >> >> >> >> >> >> >> I think so. I just get $seq1 and $seq2 from SeqIO. This is >> not >> >> my >> >> >> >> >> problem. >> >> >> >> >> >> >> >> >> >> >> >> > --Russell >> >> >> >> >> >> > >> >> >> >> >> >> >> -----Original Message----- >> >> >> >> >> >> >> From: bioperl-l-bounces at lists.open-bio.org >> [mailto:bioperl- >> >> l- >> >> >> >> >> >> >> bounces at lists.open-bio.org] On Behalf Of Peng Yu >> >> >> >> >> >> >> Sent: Wednesday, 9 June 2010 1:00 p.m. >> >> >> >> >> >> >> To: bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> Subject: [Bioperl-l] How to run blastn with -task blastn >> >> >> option >> >> >> >> from >> >> >> >> >> >> >> Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> Hi, >> >> >> >> >> >> >> >> >> >> >> >> >> >> I need to use Bio::Tools::Run::StandAloneBlastPlus to >> run >> >> the >> >> >> >> >> following >> >> >> >> >> >> >> command. >> >> >> >> >> >> >> >> >> >> >> >> >> >> blastn -task blastn -query first.fa -subject second.fa >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> I tried the following code, which works like without the >> '- >> >> >> task >> >> >> >> >> >> >> blastn' option. Would you please let me know how to >> supply >> >> the >> >> >> >> >> option >> >> >> >> >> >> >> in Bio::Tools::Run::StandAloneBlastPlus? >> >> >> >> >> >> >> >> >> >> >> >> >> >> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >> >new(); >> >> >> >> >> >> >> ? my $result=$factory->bl2seq( >> >> >> >> >> >> >> ? ? -method=>'blastn', >> >> >> >> >> >> >> ? ? -query=> $seq1, >> >> >> >> >> >> >> ? ? -subject=> $seq2 >> >> >> >> >> >> >> ? ); >> >> >> >> >> >> >> ? $factory->cleanup; >> >> >> >> >> >> >> >> >> >> >> >> >> >> Thank you for you help! >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> >> Regards, >> >> >> >> >> >> >> Peng >> >> >> >> >> >> >> _______________________________________________ >> >> >> >> >> >> >> Bioperl-l mailing list >> >> >> >> >> >> >> Bioperl-l at lists.open-bio.org >> >> >> >> >> >> >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > Attention: The information contained in this message >> and/or >> >> >> >> >> attachments >> >> >> >> >> >> > from AgResearch Limited is intended only for the persons >> or >> >> >> >> entities >> >> >> >> >> >> > to which it is addressed and may contain confidential >> and/or >> >> >> >> >> privileged >> >> >> >> >> >> > material. Any review, retransmission, dissemination or >> other >> >> >> use >> >> >> >> of, >> >> >> >> >> or >> >> >> >> >> >> > taking of any action in reliance upon, this information >> by >> >> >> persons >> >> >> >> or >> >> >> >> >> >> > entities other than the intended recipients is prohibited >> by >> >> >> >> >> AgResearch >> >> >> >> >> >> > Limited. If you have received this message in error, >> please >> >> >> notify >> >> >> >> >> the >> >> >> >> >> >> > sender immediately. >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> ======================================================================= >> >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> >> Regards, >> >> >> >> >> >> Peng >> >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> >> Regards, >> >> >> >> >> Peng >> >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> >> Regards, >> >> >> >> Peng >> >> >> > >> >> >> >> >> >> >> >> >> >> >> >> -- >> >> >> Regards, >> >> >> Peng >> >> > >> >> >> >> >> >> >> >> -- >> >> Regards, >> >> Peng >> > >> >> >> >> -- >> Regards, >> Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Regards, Peng From cjfields at illinois.edu Wed Jun 9 14:57:17 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 09:57:17 -0500 Subject: [Bioperl-l] How to run blastn with -task blastn option from Bio::Tools::Run::StandAloneBlastPlus? In-Reply-To: References: <18DF7D20DFEC044098A1062202F5FFF32D906563BF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D9065648D@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564AF@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564C6@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564E1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564F1@exchsth.agresearch.co.nz> <18DF7D20DFEC044098A1062202F5FFF32D906564FD@exchsth.agresearch.co.nz> Message-ID: <1BE50888-A4BE-4DCB-AC53-6C6BC5529EF0@illinois.edu> Peng, If you think this is a bug, can you submit it to bugzilla? It's very possible it's implemented but I'm not completely familiar with the code yet (though I will be very soon!). Mark could also probably answer most of these questions but I think he's been pretty busy as of late, but I can probably take a look. chris On Jun 9, 2010, at 9:51 AM, Peng Yu wrote: > My original code use -method=>'blastn' as > Bio::Tools::Run::StandAloneBlastPlus's option, which is not equivalent > to blast+'s command line option -task blastn. > > > On Tue, Jun 8, 2010 at 11:10 PM, Smithies, Russell > wrote: >> >> >>> -----Original Message----- >>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>> Sent: Wednesday, 9 June 2010 4:10 p.m. >>> To: Smithies, Russell >>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option from >>> Bio::Tools::Run::StandAloneBlastPlus? >>> >>> I think it is better to document the mapping between blast options and >>> bioperl options. I searched 'task', but I don't find anything. Thank >>> you for letting me know. >>> >>> On Tue, Jun 8, 2010 at 11:06 PM, Smithies, Russell >>> wrote: >>>> Bioperl's equivalent is blastn -task blastn -query first.fa -subject >>> second.fa >>>> We've just used 'method' instead of 'task'. >>>> >>>> You can always use the legacy_blast.pl script that comes with blast+ >>> then you can just use your old bl2seq commands. >>>> >>>> --Russell >>>> >>>>> -----Original Message----- >>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>> Sent: Wednesday, 9 June 2010 4:03 p.m. >>>>> To: Smithies, Russell >>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>> from >>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>> >>>>> I've solved my problem by using the wrapper. Note that this is a hack >>>>> as it is not done in bioperl. >>>>> $ cat `which blastn` >>>>> #!/usr/bin/env bash >>>>> >>>>> /myinstallation/blastn -task blastn $@ >>>>> >>>>> >>>>> Anyway, I restate my original problem below. >>>>> >>>>> bioperl's bl2seq by default is equivalent to the following command. >>>>> blastn -query first.fa -subject second.fa >>>>> >>>>> I want to add the option '-task blastn'. >>>>> blastn -task blastn -query first.fa -subject second.fa >>>>> >>>>> But I don't find such option in bioperl's bl2seq. >>>>> >>>>> On Tue, Jun 8, 2010 at 10:58 PM, Smithies, Russell >>>>> wrote: >>>>>> I've lost track of what your main problem is, please restate your >>>>> original question? >>>>>> I.e. what isn't working in Bio::Tools::Run::StandAloneBlastPlus or >>> what >>>>> part of the documentation is incorrect? >>>>>> >>>>>> >>>>>> --Russell >>>>>> >>>>>> >>>>>>> -----Original Message----- >>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>> Sent: Wednesday, 9 June 2010 3:53 p.m. >>>>>>> To: Smithies, Russell >>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn option >>>>> from >>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>> >>>>>>> I knew this I should use blastn as bl2seq command is not available >>> in >>>>>>> BLAST+. I'm not sure what you think I should read? >>>>>>> >>>>>>> On Tue, Jun 8, 2010 at 10:47 PM, Smithies, Russell >>>>>>> wrote: >>>>>>>> I really think you need to spend more time reading and less time >>>>>>> emailing. >>>>>>>> >>>>>>>> >>>>> http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=newsncbi&part=Jan09 >>>>>>>> The BLAST+ package includes the ability to compare two or more >>>>> sequences >>>>>>> to each other in each of the search programs. Using the -subject >>>>> option >>>>>>> instead of the -db will cause any of the search programs to behave >>> as a >>>>>>> BLAST 2 sequences program. This eliminates the need for the BLAST 2 >>>>>>> sequences utility (bl2seq) included in the traditional BLAST >>> package. >>>>>>>> >>>>>>>> While it's still called 'bl2seq' in StandAloneBlastPlus, it's just >>> a >>>>>>> wrapper as there's no longer a bl2seq executable as there was with >>> the >>>>>>> older version of BLAST. >>>>>>>> >>>>>>>> >>>>>>>> --Russell >>>>>>>> >>>>>>>>> -----Original Message----- >>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>> Sent: Wednesday, 9 June 2010 3:37 p.m. >>>>>>>>> To: Smithies, Russell >>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>> option >>>>>>> from >>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>> >>>>>>>>> I made a wrapper. Then I call bl2seq in bioperl. The result >>> changes, >>>>>>>>> which means bioperl call blastn rather than bl2seq in the command >>>>>>>>> line. The results are consistent between bioperl and blastn >>> command >>>>>>>>> line. >>>>>>>>> >>>>>>>>> $ cat `which blastn` >>>>>>>>> #!/usr/bin/env bash >>>>>>>>> >>>>>>>>> /myinstallation/blastn -task blastn $@ >>>>>>>>> >>>>>>>>> >>>>>>>>> On Tue, Jun 8, 2010 at 10:31 PM, Smithies, Russell >>>>>>>>> wrote: >>>>>>>>>> Without digging thru the code, I think the developer can call >>> the >>>>>>>>> parameters whatever he likes and if he wants to use "-method " >>>>> instead >>>>>>> of >>>>>>>>> "-task " there's probably a good reason (right MAJ?) >>>>>>>>>> >>>>>>>>>> If you write code as in the docs, does it give you the same >>>>> results >>>>>>> as >>>>>>>>> when you run bl2seq manually from the command line? >>>>>>>>>> When you run it via BioPerl, does " -method => 'blastn' " give >>> you >>>>> a >>>>>>>>> different result to " -method => 'megablast' " or " -method => >>> 'dc- >>>>>>>>> megablast' " >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> --Russell >>>>>>>>>> >>>>>>>>>> >>>>>>>>>> >>>>>>>>>>> -----Original Message----- >>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>> Sent: Wednesday, 9 June 2010 3:12 p.m. >>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task blastn >>>>> option >>>>>>>>> from >>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>> >>>>>>>>>>> See the help page of blastn. By default blastn use the option >>> "- >>>>> task >>>>>>>>>>> megablast", which is less sensitive than the option "-task >>>>> blastn". >>>>>>>>>>> >>>>>>>>>>> $ blastn -help >>>>>>>>>>> .... >>>>>>>>>>> -task >> 'dc- >>>>>>>>> megablast' >>>>>>>>>>> 'megablast' 'vecscreen' > >>>>>>>>>>> Task to execute >>>>>>>>>>> Default = `megablast' >>>>>>>>>>> ... >>>>>>>>>>> >>>>>>>>>>> On Tue, Jun 8, 2010 at 10:09 PM, Smithies, Russell >>>>>>>>>>> wrote: >>>>>>>>>>>> Why are you trying to supply option '-task blastn' ?? >>>>>>>>>>>> I think the docs make it fairly clear that this is not one >>> of >>>>> the >>>>>>>>>>> available parameters. >>>>>>>>>>>> The option " -method => 'blastn' " (as detailed in the docs) >>> is >>>>>>> the >>>>>>>>> one >>>>>>>>>>> to use. >>>>>>>>>>>> http://doc.bioperl.org/releases/bioperl-current/bioperl- >>>>>>>>>>> run/lib/Bio/Tools/Run/StandAloneBlastPlus/BlastMethods.html >>>>>>>>>>>> >>>>>>>>>>>> # create a factory: >>>>>>>>>>>> $fac = Bio::Tools::Run::StandAloneBlastPlus->new(); >>>>>>>>>>>> >>>>>>>>>>>> # do a bl2seq >>>>>>>>>>>> $fac->bl2seq( -method => 'blastn', >>>>>>>>>>>> -query => $seq_object_1, >>>>>>>>>>>> -subject => $seq_object_2 ); >>>>>>>>>>>> >>>>>>>>>>>> Unless I've missed something and >>>>>>> Bio::Tools::Run::StandAloneBlastPlus >>>>>>>>> is >>>>>>>>>>> completely broken (which is possible as it's development code) >>>>>>>>> something >>>>>>>>>>> similar to the example should work. >>>>>>>>>>>> >>>>>>>>>>>> --Russell >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>> From: Peng Yu [mailto:pengyu.ut at gmail.com] >>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 2:21 p.m. >>>>>>>>>>>>> To: Smithies, Russell >>>>>>>>>>>>> Cc: bioperl-l at lists.open-bio.org >>>>>>>>>>>>> Subject: Re: [Bioperl-l] How to run blastn with -task >>> blastn >>>>>>> option >>>>>>>>>>> from >>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>> >>>>>>>>>>>>> On Tue, Jun 8, 2010 at 8:28 PM, Smithies, Russell >>>>>>>>>>>>> wrote: >>>>>>>>>>>>>> Have you read the docs? >>>>>>>>>>>>>> >>> http://www.bioperl.org/wiki/HOWTO:BlastPlus#Running_bl2seq >>>>>>>>>>>>> >>>>>>>>>>>>> Yes. But they don't say how to supply option '-task blastn' >>> to >>>>>>>>> blastn. >>>>>>>>>>> I >>>>>>>>>>>>> tried >>>>>>>>>>>>> >>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus->new(- >>>>>>>>>>> task='blastn'); >>>>>>>>>>>>> >>>>>>>>>>>>> But it doesn't work. >>>>>>>>>>>>> >>>>>>>>>>>>>> Do query and subject ($seq1 and $seq2) need to be >>> Bio::Seq >>>>>>>>> objects? >>>>>>>>>>>>> >>>>>>>>>>>>> I think so. I just get $seq1 and $seq2 from SeqIO. This is >>> not >>>>> my >>>>>>>>>>> problem. >>>>>>>>>>>>> >>>>>>>>>>>>>> --Russell >>>>>>>>>>>>>> >>>>>>>>>>>>>>> -----Original Message----- >>>>>>>>>>>>>>> From: bioperl-l-bounces at lists.open-bio.org >>> [mailto:bioperl- >>>>> l- >>>>>>>>>>>>>>> bounces at lists.open-bio.org] On Behalf Of Peng Yu >>>>>>>>>>>>>>> Sent: Wednesday, 9 June 2010 1:00 p.m. >>>>>>>>>>>>>>> To: bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> Subject: [Bioperl-l] How to run blastn with -task blastn >>>>>>> option >>>>>>>>> from >>>>>>>>>>>>>>> Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Hi, >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I need to use Bio::Tools::Run::StandAloneBlastPlus to >>> run >>>>> the >>>>>>>>>>> following >>>>>>>>>>>>>>> command. >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> blastn -task blastn -query first.fa -subject second.fa >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> I tried the following code, which works like without the >>> '- >>>>>>> task >>>>>>>>>>>>>>> blastn' option. Would you please let me know how to >>> supply >>>>> the >>>>>>>>>>> option >>>>>>>>>>>>>>> in Bio::Tools::Run::StandAloneBlastPlus? >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> my $factory = Bio::Tools::Run::StandAloneBlastPlus- >>>> new(); >>>>>>>>>>>>>>> my $result=$factory->bl2seq( >>>>>>>>>>>>>>> -method=>'blastn', >>>>>>>>>>>>>>> -query=> $seq1, >>>>>>>>>>>>>>> -subject=> $seq2 >>>>>>>>>>>>>>> ); >>>>>>>>>>>>>>> $factory->cleanup; >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> Thank you for you help! >>>>>>>>>>>>>>> >>>>>>>>>>>>>>> -- >>>>>>>>>>>>>>> Regards, >>>>>>>>>>>>>>> Peng >>>>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>>>> Bioperl-l mailing list >>>>>>>>>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>>>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> Attention: The information contained in this message >>> and/or >>>>>>>>>>> attachments >>>>>>>>>>>>>> from AgResearch Limited is intended only for the persons >>> or >>>>>>>>> entities >>>>>>>>>>>>>> to which it is addressed and may contain confidential >>> and/or >>>>>>>>>>> privileged >>>>>>>>>>>>>> material. Any review, retransmission, dissemination or >>> other >>>>>>> use >>>>>>>>> of, >>>>>>>>>>> or >>>>>>>>>>>>>> taking of any action in reliance upon, this information >>> by >>>>>>> persons >>>>>>>>> or >>>>>>>>>>>>>> entities other than the intended recipients is prohibited >>> by >>>>>>>>>>> AgResearch >>>>>>>>>>>>>> Limited. If you have received this message in error, >>> please >>>>>>> notify >>>>>>>>>>> the >>>>>>>>>>>>>> sender immediately. >>>>>>>>>>>>>> >>>>>>>>>>> >>>>>>> >>> ======================================================================= >>>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> >>>>>>>>>>>>> -- >>>>>>>>>>>>> Regards, >>>>>>>>>>>>> Peng >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>>> -- >>>>>>>>>>> Regards, >>>>>>>>>>> Peng >>>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> -- >>>>>>>>> Regards, >>>>>>>>> Peng >>>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> -- >>>>>>> Regards, >>>>>>> Peng >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Regards, >>>>> Peng >>>> >>> >>> >>> >>> -- >>> Regards, >>> Peng >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Regards, > Peng > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From amackey at virginia.edu Wed Jun 9 14:50:48 2010 From: amackey at virginia.edu (Aaron Mackey) Date: Wed, 9 Jun 2010 10:50:48 -0400 Subject: [Bioperl-l] patch: fix parsing of FASTA results Message-ID: Hopefully someone a bit more git-savvy than me can drop this little ditty in to Bio/SearchIO/fasta.pm? [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 @@ -623,7 +623,7 @@ $_ = $self->_readline(); my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* (?: bits: \s* (\S+) \s+ )? - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; + (?: E|expect ) \s* \((?:\d+)?\) :? \s*(\S+)/ox; $bits = $score unless defined $bits; my $v = shift @hit_signifs; From golharam at gmail.com Wed Jun 9 15:59:01 2010 From: golharam at gmail.com (Ryan) Date: Wed, 9 Jun 2010 08:59:01 -0700 (PDT) Subject: [Bioperl-l] How to determine match type from Bio::Coordinate::GeneMapper Message-ID: <8838cc42-fc66-4b46-bf46-43053333e664@x27g2000yqb.googlegroups.com> Hi - I'm using Bio::Coordinate::GeneMapper to map from CDS to Gene Coordinates. I'm using the example given in the code: # Collection representing exons # cds 1 5 6 10 11 15 # exon 1 5 1 5 1 5 # gene 1 5 11 15 21 25 # |---| |---| |---| #-----|-----------------------|---|-- # chr 1 5 9 15 19 25 29 # pair1 pair2 pair3 If I map cds(1-5) -> gene(1-5), the first 5 bases of the cds map to the first 5 bases of the gene, as expected. my $cds_pos = Bio::Location::Simple->new(-start => 1, -end => 5, - strand => 1); my $gen_pos = $m->map($cds_pos); is ($gen_pos->start, 1); is ($gen_pos->end, 5); If I map cds(6-11) -> gene(11-21), I get 2 sublocations $cds_pos = Bio::Location::Simple->new(-start => 6, -end => 11, -strand => 1); my $gen_pos_split = $m->map($cds_pos); is ($gen_pos_split->start, 11); is ($gen_pos_split->end, 21); My question is, how do I determine, after mapping, that my result is in ONE consecutive location, or in multiple locations? I can't figure this out from the documentation on Bio::Coordinate::GeneMapper or Bio::Coordinate::Result. From jessica.sun at gmail.com Wed Jun 9 16:28:58 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:28:58 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 16:46:51 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 18:46:51 +0200 Subject: [Bioperl-l] patch: fix parsing of FASTA results In-Reply-To: References: Message-ID: Committed. Tests pass. Thanks, Aaron! Dave On Jun 9, 2010, at 4:50 PM, Aaron Mackey wrote: > Hopefully someone a bit more git-savvy than me can drop this little ditty in > to Bio/SearchIO/fasta.pm? > > [ajm6q at lc4 SearchIO]$ diff -u fasta.pm~ fasta.pm > --- fasta.pm~ 2010-04-09 12:59:00.000000000 -0400 > +++ fasta.pm 2010-06-09 10:46:11.350773222 -0400 > @@ -623,7 +623,7 @@ > $_ = $self->_readline(); > my ( $score, $bits, $e ) = /Z-score: \s* (\S+) \s* > (?: bits: \s* (\S+) \s+ )? > - (?: E|expect ) \s* \(\) :? \s*(\S+)/ox; > + (?: E|expect ) \s* \((?:\d+)?\) :? > \s*(\S+)/ox; > $bits = $score unless defined $bits; > > my $v = shift @hit_signifs; > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Wed Jun 9 16:30:35 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 12:30:35 -0400 Subject: [Bioperl-l] Fwd: Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: ---------- Forwarded message ---------- From: Jessica Sun Date: Wed, Jun 9, 2010 at 12:28 PM Subject: Re: [Bioperl-l] Get variation included in genbank file To: Dave Messina Cc: bioperl-l at lists.open-bio.org I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. thx On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for > example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a > NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > -- Jessica Jingping Sun -- Jessica Jingping Sun -------------- next part -------------- A non-text attachment was scrubbed... Name: FLNA.gbk Type: application/octet-stream Size: 85620 bytes Desc: not available URL: From David.Messina at sbc.su.se Wed Jun 9 17:20:12 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:20:12 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: Hi again Jessica, Forgive my slowness here, but is this what you want to do? 1) Start with an NM_ mRNA record in your example, NM_001110556.1 2) Obtain the corresponding NG_ genomics locus record in Genbank format which would correspond to the example file you attached. Accession number NG_011506 Is that right? There are probably more clever ways to do this, but here's how I would approach it: 1) extract the GeneID dbxref from the NM_ mRNA record using Bio::SeqIO. See http://www.bioperl.org/wiki/HOWTO:Feature-Annotation#Getting_the_Features for details. 2) Use that to query the Gene database and get the related NG_ record I don't know exactly what the field name is for the NG_ record, but you can list them all using this example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#What_information_is_available_for_database_.27x.27.3F and figure it out via trial and error. 3) Once you have the NG_ id, you can retrieve the genbank record Here's the relevant example: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#Retrieve_raw_data_records_from_GenBank.2C_save_raw_data_to_file.2C_then_parse_via_Bio::SeqIO So, by now it should be obvious that I'm presenting a general strategy. You'll have to do some legwork to get exactly what you want. Good luck, and if you come up with a nice solution, please add it to the wiki! Dave > I would need to automatically get a gbk file like this with :Variation(dbSNP) included and correct mRNA/CDS regions, can it be done automatically using EUtilities, I am not sure about it. > > thx > > > On Mon, Jun 7, 2010 at 5:18 PM, Dave Messina wrote: > Hi Jessica, > > > > Does any know how to include variation(dbSNP) in the genbank file format > > automatically using NM_ accession number using bioperl? > > I'm not sure I understand the question. > > As far as I know, Genbank records don't include SNP information. See for example the record for human p53 (which has SNPs): > > http://www.ncbi.nlm.nih.gov/nuccore/NM_000546.4 > > > I think though you should be able to get to a dbSNP record if you have a NM_ accession number using the BioPerl interface to NCBI's EUtilities. > > More information here: > > http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook > > > If that's not what you're after, could you clarify what you want to do? > > > Dave > > > > > -- > Jessica Jingping Sun > From David.Messina at sbc.su.se Wed Jun 9 17:51:25 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 19:51:25 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> Message-ID: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Hi Jessica, Please keep the BioPerl list on the Cc line so everyone can follow along. > Follow your approach it did not seem to me you can have Variation tag included which > list the know dbSNP location, id and allele changes? Ah okay, I assumed the file you attached was obtained directly from Genbank and that the variation info therein was already included. (It appears that's not the case ? the variation information is not present in the version of NG_011506 I found at Genbank.) If you want to include your own custom information in a genbank file, you'll have to pull it out of dbSNP (or wherever the variation info is). There are a couple of scripts that might be able to help with that (search for snp): http://www.bioperl.org/wiki/Bioperl_scripts You can then insert them into a RichSeq object as features and output in genbank format. For that part, see the HOWTO: http://www.bioperl.org/wiki/HOWTO:Feature-Annotation Dave From jessica.sun at gmail.com Wed Jun 9 18:37:46 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Wed, 9 Jun 2010 14:37:46 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: Thanks Dave. the variation information is not present in the version of NG_011506 I found at Genbank.) -- Yes, then if you click on the right side customer view there is a check box Features added by NCBI :209 snps, if you check that it will add all the variations in the gbk fomat. I found this would be a neat feature if it can automatically load by bioperl with an option turn on. On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > Hi Jessica, > > Please keep the BioPerl list on the Cc line so everyone can follow along. > > > > Follow your approach it did not seem to me you can have Variation tag > included which > > list the know dbSNP location, id and allele changes? > > Ah okay, I assumed the file you attached was obtained directly from Genbank > and that the variation info therein was already included. (It appears that's > not the case ? the variation information is not present in the version of > NG_011506 I found at Genbank.) > > If you want to include your own custom information in a genbank file, > you'll have to pull it out of dbSNP (or wherever the variation info is). > There are a couple of scripts that might be able to help with that (search > for snp): > > http://www.bioperl.org/wiki/Bioperl_scripts > > > You can then insert them into a RichSeq object as features and output in > genbank format. For that part, see the HOWTO: > > http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > > > Dave > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Wed Jun 9 19:08:50 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Wed, 9 Jun 2010 21:08:50 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <088E96F2-E26D-4142-AEB8-A8EFD26DEE68@sbc.su.se> > I found this would be a neat feature if it can automatically load by bioperl with an option turn on. Enhancements of that sort are normally contributed by BioPerl users who have a desire for them. (hint hint :) While I can't promise anything, of course, feel free to submit an enhancement request to our bug tracker: http://bugzilla.open-bio.org/ Dave From cjfields at illinois.edu Thu Jun 10 00:06:42 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 9 Jun 2010 19:06:42 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> Message-ID: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. #!/usr/bin/perl -w use Modern::Perl; use Bio::DB::EUtilities; my $id = '224809339'; my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', -id => $id, -email => 'setyourown at foo.bar', -verbose => 1, -dbfrom => 'nuccore', -db => 'snp', -cmd => 'neighbor_history', ); my $hist = $eutil->next_History || die "No history data returned"; $eutil->set_parameters(-eutil => 'efetch', -history => $hist, -retmode => 'text', # 'chr', 'flt', 'brief', 'rsr', 'docset' -rettype => 'chr' ); $eutil->get_Response(-file => 'snps.txt'); # or ... $eutil->set_parameters(-eutil => 'esummary', -history => $hist, ); $eutil->print_all; # chris On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > Thanks Dave. > the variation information is not present in the version of NG_011506 I found > at Genbank.) -- Yes, then if you click on the right side customer view there > is a check box Features added by NCBI :209 snps, if you check that it will > add all the variations in the gbk fomat. I found this would be a neat > feature if it can automatically load by bioperl with an option turn on. > > > > On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: > >> Hi Jessica, >> >> Please keep the BioPerl list on the Cc line so everyone can follow along. >> >> >>> Follow your approach it did not seem to me you can have Variation tag >> included which >>> list the know dbSNP location, id and allele changes? >> >> Ah okay, I assumed the file you attached was obtained directly from Genbank >> and that the variation info therein was already included. (It appears that's >> not the case ? the variation information is not present in the version of >> NG_011506 I found at Genbank.) >> >> If you want to include your own custom information in a genbank file, >> you'll have to pull it out of dbSNP (or wherever the variation info is). >> There are a couple of scripts that might be able to help with that (search >> for snp): >> >> http://www.bioperl.org/wiki/Bioperl_scripts >> >> >> You can then insert them into a RichSeq object as features and output in >> genbank format. For that part, see the HOWTO: >> >> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >> >> >> Dave >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From bimber at wisc.edu Thu Jun 10 13:43:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 08:43:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix Message-ID: hello, a little while ago i posted a bug about commandexts when you pass an array ref. when you pass an arrayref of files, instead of a string with 1 file, you get an error saying 'cannot use string '......' as an array ref while strict refs in place'. i believe i understand the bug, but am not entirely sure the best way to fix it. here's the original code from commandexts.pm, starting line 989: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@files, $_, 1, @{$files[$_]}); splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); } } It throws the error on the second splice(). The reason is b/c $files[$_] isnt an array ref anymore, b/c we just expanded it in the line before. Truthfully, I dont entirely understand why we're expanding out @switches for each file. Maybe i'm missing something obvious, but why would we want these copied? however, there's couple ways around it: 1. save the value of @{$files[$_]} by adding: my @tmp = @{$files[$_]};, then using @tmp on that line 2. put the second splice() before the first 3. if the idea is actually to expand @switches against every file, then move this outside the for loop I originally posted that this could be fixed by surrounding the problem line with 'no strict'/ 'use strict'; however, that really only worked b/c the command I was using did not actually have any switches. I doubt it would work properly if your command had them. -Ben From cjfields at illinois.edu Thu Jun 10 14:58:56 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 09:58:56 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: Message-ID: On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > hello, > > a little while ago i posted a bug about commandexts when you pass an > array ref. when you pass an arrayref of files, instead of a string > with 1 file, you get an error saying 'cannot use string '......' as an > array ref while strict refs in place'. i believe i understand the > bug, but am not entirely sure the best way to fix it. here's the > original code from commandexts.pm, starting line 989: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@files, $_, 1, @{$files[$_]}); > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > } > } > > It throws the error on the second splice(). The reason is b/c > $files[$_] isnt an array ref anymore, b/c we just expanded it in the > line before. Truthfully, I dont entirely understand why we're > expanding out @switches for each file. Maybe i'm missing something > obvious, but why would we want these copied? Maybe @file and @switches are in-sync and thus need similar expansion? Not sure, personally. > however, there's couple ways around it: > > 1. save the value of @{$files[$_]} by adding: my @tmp = > @{$files[$_]};, then using @tmp on that line > 2. put the second splice() before the first > 3. if the idea is actually to expand @switches against every file, > then move this outside the for loop The first one seems safest. The real question is, do any of these solutions work? Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > I originally posted that this could be fixed by surrounding the > problem line with 'no strict'/ 'use strict'; however, that really only > worked b/c the command I was using did not actually have any switches. > I doubt it would work properly if your command had them. > > -Ben I think, if one of the proposed solutions works, pick which you think is the best and go with it. Test it out, then we can commit this to github. BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. chris From armendarez77 at hotmail.com Thu Jun 10 14:54:18 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 07:54:18 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID Message-ID: Hello, Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a 'Bad Gateway' error. While my system admin is looking into this, I've decided to go another route. Therefore, I've downloaded the NCBI nr database. The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. Thank you, Veronica _________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 From gopal.cshl at gmail.com Thu Jun 10 16:24:31 2010 From: gopal.cshl at gmail.com (Gopal) Date: Thu, 10 Jun 2010 12:24:31 -0400 Subject: [Bioperl-l] recursion limit reached for a gbk file Message-ID: Hi, I get a error message "Complex regular subexpression recursion limit (32766) exceeded " when I try to parse CDS from a microbial genbank file. Apparently recursion limit is universal and that means, others have somehow overcome this problem. The subroutine that triggers this error is pasted below: (based on "Beginning perl for Bioinformatics" as I am trying to adapt an example in that book for my work) $fh = open_file($library); $offset = tell($fh); while( $record = get_next_record($fh) ) { my $locus=( ); ($annotation, $dna) = get_annotation_and_dna($record); $offset = tell($fh); # Extract the fields of the annotation %fields = parse_annotation($annotation); Sub-routine that triggers the error message: sub parse_annotation { my($annotation) = @_; my(%results) = ( ); while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { my $value = $&; (my $key = $value) =~ s/^([A-Z]+).*/$1/s; $results{$key} = $value; } return %results; } thanks, -gopal From bimber at wisc.edu Thu Jun 10 16:46:04 2010 From: bimber at wisc.edu (Ben Bimber) Date: Thu, 10 Jun 2010 11:46:04 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: i suspect this piece of code is seldom encountered. if any existing bioperl wrapper actually tried to pass an arrayref to commandexts, it would hit this same error. i only encountered this using samtools merge. I looked a little more into exactly what @switch is doing. it seems to allow you to supply switches specific to a given file. the bowtie wrapper uses it with paired end data (the first fasta gets a -1 and and second gets a -2). however, i dont see anywhere where this actually applies in a multi-file situation. nonetheless, reversing the order of the two existing splice() (lines 991-992) I think will preserve whatever functionality was there and prevent the error: my @files = @args{@specs}; # expand arrayrefs my $l = $#files; for (0..$l) { if (ref($files[$_]) eq 'ARRAY') { splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); splice(@files, $_, 1, @{$files[$_]}); } } As I write this email and look at the code above a little more, I think that the current approach used to expand these arrayrefs will also break down in other situations, including when the arrayref is not in the last element of the @files array or when 2 arrayrefs are passed. However, it seems that this is barely used and it really depends how much time/thought you want to put into it. -Ben On Thu, Jun 10, 2010 at 9:58 AM, Chris Fields wrote: > On Jun 10, 2010, at 8:43 AM, Ben Bimber wrote: > >> hello, >> >> a little while ago i posted a bug about commandexts when you pass an >> array ref. ?when you pass an arrayref of files, instead of a string >> with 1 file, you get an error saying 'cannot use string '......' as an >> array ref while strict refs in place'. ?i believe i understand the >> bug, but am not entirely sure the best way to fix it. ?here's the >> original code from commandexts.pm, starting line 989: >> >> ? ?my @files = @args{@specs}; >> ? ?# expand arrayrefs >> ? ?my $l = $#files; >> ? ?for (0..$l) { >> ? ? ? if (ref($files[$_]) eq 'ARRAY') { >> ? ? ? ? ? splice(@files, $_, 1, @{$files[$_]}); >> ? ? ? ? ? splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); >> ? ? ? } >> ? ?} >> >> It throws the error on the second splice(). ?The reason is b/c >> $files[$_] isnt an array ref anymore, b/c we just expanded it in the >> line before. ?Truthfully, I dont entirely understand why we're >> expanding out @switches for each file. ?Maybe i'm missing something >> obvious, but why would we want these copied? > > Maybe @file and @switches are in-sync and thus need similar expansion? ?Not sure, personally. > >> however, there's couple ways around it: >> >> 1. save the value of ?@{$files[$_]} by adding: my @tmp = >> @{$files[$_]};, then using @tmp on that line >> 2. put the second splice() before the first >> 3. if the idea is actually to expand @switches against every file, >> then move this outside the for loop > > The first one seems safest. ?The real question is, do any of these solutions work? ?Do any of the modules requiring the command extensions in bioperl-run show problems, for instance? > >> I originally posted that this could be fixed by surrounding the >> problem line with 'no strict'/ 'use strict'; however, that really only >> worked b/c the command I was using did not actually have any switches. >> I doubt it would work properly if your command had them. >> >> -Ben > > I think, if one of the proposed solutions works, pick which you think is the best and go with it. ?Test it out, then we can commit this to github. > > BTW, sorry about the warnocking, a number of us (myself included) have been extremely busy as of late. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From cjfields at illinois.edu Thu Jun 10 17:04:08 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 12:04:08 -0500 Subject: [Bioperl-l] commandexts and array refs bug - found problem, not sure of best fix In-Reply-To: References: <20376_1276182339_ZZh0143_ZAdLH.00_BB3B4314-D2BA-4280-B066-E2396E4FE805@illinois.edu> Message-ID: <6814E5AE-D074-4199-8269-6CDB928EB9DD@illinois.edu> On Jun 10, 2010, at 11:46 AM, Ben Bimber wrote: > i suspect this piece of code is seldom encountered. if any existing > bioperl wrapper actually tried to pass an arrayref to commandexts, it > would hit this same error. i only encountered this using samtools > merge. > > I looked a little more into exactly what @switch is doing. it seems > to allow you to supply switches specific to a given file. the bowtie > wrapper uses it with paired end data (the first fasta gets a -1 and > and second gets a -2). however, i dont see anywhere where this > actually applies in a multi-file situation. nonetheless, reversing > the order of the two existing splice() (lines 991-992) I think will > preserve whatever functionality was there and prevent the error: > > my @files = @args{@specs}; > # expand arrayrefs > my $l = $#files; > for (0..$l) { > if (ref($files[$_]) eq 'ARRAY') { > splice(@switches, $_, 1, ($switches[$_]) x @{$files[$_]}); > splice(@files, $_, 1, @{$files[$_]}); > } > } > > As I write this email and look at the code above a little more, I > think that the current approach used to expand these arrayrefs will > also break down in other situations, including when the arrayref is > not in the last element of the @files array or when 2 arrayrefs are > passed. However, it seems that this is barely used and it really > depends how much time/thought you want to put into it. > > -Ben It's worth documenting this concern in the code as a comment, particularly if the situation does pop up at some point. Do you want to send a patch in? Or just want us to make the switch in the code directly? chris From chmille4 at gmail.com Thu Jun 10 18:53:15 2010 From: chmille4 at gmail.com (Chase Miller) Date: Thu, 10 Jun 2010 14:53:15 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. Message-ID: Hi all, First off, I hope it's ok to post job openings here. However, I couldn't think of a better place to find some high quality people . As for the postion, The Center for Infection and Immunity at Columbia University has an opening for programmer analyst. If you are interested, check out the link below for more information https://jobs.columbia.edu/applicants/jsp/shared/frameset/Frameset.jsp?time=1276195489164 Thanks, Chase Miller Programmer Analyst The Center for Infection and Immunity Columbia University From David.Messina at sbc.su.se Thu Jun 10 19:39:14 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:39:14 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: Message-ID: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Hi Gopal, This is not a BioPerl question, so this list is really not the place for it. However, here's the first Google hit on your error message, which provides a solution: http://www.perlmonks.org/?node_id=810857 The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? Dave On Jun 10, 2010, at 6:24 PM, Gopal wrote: > Hi, > > I get a error message "Complex regular subexpression recursion limit > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > Apparently recursion limit is universal and that means, > others have somehow overcome this problem. > > The subroutine that triggers this error is pasted below: > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > example in that book for my work) > > > $fh = open_file($library); > > $offset = tell($fh); > > while( $record = get_next_record($fh) ) { > > my $locus=( ); > > ($annotation, $dna) = get_annotation_and_dna($record); > > $offset = tell($fh); > > > > # Extract the fields of the annotation > %fields = parse_annotation($annotation); > > > Sub-routine that triggers the error message: > > > sub parse_annotation { > > my($annotation) = @_; > my(%results) = ( ); > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > my $value = $&; > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > $results{$key} = $value; > } > > return %results; > } > > thanks, > > -gopal > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 19:56:21 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 21:56:21 +0200 Subject: [Bioperl-l] recursion limit reached for a gbk file In-Reply-To: References: <3CE6E7DC-9A88-48F5-9B12-A361F313602A@sbc.su.se> Message-ID: On Jun 10, 2010, at 9:54 PM, Gopal wrote: > Hi Dave, > > thanks for the tip. I saw that and others too. > > In "Beginning Perl for Bioinformatics", such a sub routine that I posted earlier was used for parsing out features etc. of genbank file (chapter 10). > That does not work well, at least with me, when large genbank files with multiple records are used. > > Meanwhile, by avoiding the problem of regex for long strings in a while loop and by parsing information by differently by reducing the > length of the string, I have fixed the problem. The trick was to avoid the hash as that required all of the long string to be stored in $value. > > thanks anyway, > > best > > -gopal > > On Thu, Jun 10, 2010 at 3:39 PM, Dave Messina wrote: > Hi Gopal, > > This is not a BioPerl question, so this list is really not the place for it. > > However, here's the first Google hit on your error message, which provides a solution: > > http://www.perlmonks.org/?node_id=810857 > > The short answer is that it's sort of a bug in Perl which is fixed in Perl version 5.12. > > Also, this is probably not a good approach for long strings. What is this technique being used for in "Beginning Perl for Bioinformatics"? > > > Dave > > > > On Jun 10, 2010, at 6:24 PM, Gopal wrote: > > > Hi, > > > > I get a error message "Complex regular subexpression recursion limit > > (32766) exceeded " when I try to parse CDS from a microbial genbank file. > > Apparently recursion limit is universal and that means, > > others have somehow overcome this problem. > > > > The subroutine that triggers this error is pasted below: > > > > (based on "Beginning perl for Bioinformatics" as I am trying to adapt an > > example in that book for my work) > > > > > > $fh = open_file($library); > > > > $offset = tell($fh); > > > > while( $record = get_next_record($fh) ) { > > > > my $locus=( ); > > > > ($annotation, $dna) = get_annotation_and_dna($record); > > > > $offset = tell($fh); > > > > > > > > # Extract the fields of the annotation > > %fields = parse_annotation($annotation); > > > > > > Sub-routine that triggers the error message: > > > > > > sub parse_annotation { > > > > my($annotation) = @_; > > my(%results) = ( ); > > > > while( $annotation =~ /^[A-Z].*\n(^\s.*\n)*/gm ) { > > my $value = $&; > > (my $key = $value) =~ s/^([A-Z]+).*/$1/s; > > $results{$key} = $value; > > } > > > > return %results; > > } > > > > thanks, > > > > -gopal > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > From David.Messina at sbc.su.se Thu Jun 10 20:00:49 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:00:49 +0200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: Message-ID: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Hi Veronica, These days when you run BLAST at the NCBI server, you're running BLAST+, which is their complete rewrite of (and replacement for) BLAST. You can also download BLAST+ and do pretty much everything on your local machine that you can do on their server, including limit by taxonomy. I think this is the right parameter: http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query Incidentally, BLAST+ has this awesome feature whereby you can, from the command line, run searches remotely on their server against their databases from the command line, just by adding the --remote flag. (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by the way.) Dave On Jun 10, 2010, at 4:54 PM, wrote: > > Hello, > > Is there a BioPerl method that will give a list of GIs for a specified NCBI taxonomy Id? > > I've previously tried using Urlapi to BLAST primers against the nr database on the NCBI server, but recently I keep getting a > 'Bad Gateway' error. While my system admin is looking into this, I've > decided to go another route. Therefore, I've downloaded the NCBI nr database. > > The problem I've run into is restricting the BLAST against the nr database to a subset of sequences. The NCBI Blast tools have an option (-l) that does this, but it requires a list of GI's. > > When I was using Urlapi, I restricted sequences using Taxonomy Ids (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but not the reverse. > > > Thank you, > > Veronica > > > > > _________________________________________________________________ > Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 10 20:11:27 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Thu, 10 Jun 2010 22:11:27 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Nice, Chris! I've added it to the EUtils cookbook. Dave On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > It's much easier to work with the GI than the accession. NCBI unfortunately just recently 'broke' their acc->gi stuff via efetch; you have to use rettype='seqid' and munge ASN.1 to get everything (though it is nice in a way for ID mapping). > > After the initial step of grabbing the GI for NG_011506, though, you can use elink to grab the SNP IDs, then use efetch to get the actual SNP files, or esummary for the summary info. > > #!/usr/bin/perl -w > > use Modern::Perl; > use Bio::DB::EUtilities; > > my $id = '224809339'; > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > -id => $id, > -email => 'setyourown at foo.bar', > -verbose => 1, > -dbfrom => 'nuccore', > -db => 'snp', > -cmd => 'neighbor_history', > ); > > my $hist = $eutil->next_History || die "No history data returned"; > > $eutil->set_parameters(-eutil => 'efetch', > -history => $hist, > -retmode => 'text', > # 'chr', 'flt', 'brief', 'rsr', 'docset' > -rettype => 'chr' > ); > > $eutil->get_Response(-file => 'snps.txt'); > > # or ... > > $eutil->set_parameters(-eutil => 'esummary', > -history => $hist, > ); > > $eutil->print_all; > > # chris > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >> Thanks Dave. >> the variation information is not present in the version of NG_011506 I found >> at Genbank.) -- Yes, then if you click on the right side customer view there >> is a check box Features added by NCBI :209 snps, if you check that it will >> add all the variations in the gbk fomat. I found this would be a neat >> feature if it can automatically load by bioperl with an option turn on. >> >> >> >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina wrote: >> >>> Hi Jessica, >>> >>> Please keep the BioPerl list on the Cc line so everyone can follow along. >>> >>> >>>> Follow your approach it did not seem to me you can have Variation tag >>> included which >>>> list the know dbSNP location, id and allele changes? >>> >>> Ah okay, I assumed the file you attached was obtained directly from Genbank >>> and that the variation info therein was already included. (It appears that's >>> not the case ? the variation information is not present in the version of >>> NG_011506 I found at Genbank.) >>> >>> If you want to include your own custom information in a genbank file, >>> you'll have to pull it out of dbSNP (or wherever the variation info is). >>> There are a couple of scripts that might be able to help with that (search >>> for snp): >>> >>> http://www.bioperl.org/wiki/Bioperl_scripts >>> >>> >>> You can then insert them into a RichSeq object as features and output in >>> genbank format. For that part, see the HOWTO: >>> >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>> >>> >>> Dave >>> >>> >> >> >> -- >> Jessica Jingping Sun >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > From hlapp at drycafe.net Thu Jun 10 20:21:28 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Thu, 10 Jun 2010 16:21:28 -0400 Subject: [Bioperl-l] Programmer Analyst Position at Columbia Univ. In-Reply-To: References: Message-ID: <6390F20C-9E9A-425E-AB59-33918612B052@drycafe.net> On Jun 10, 2010, at 2:53 PM, Chase Miller wrote: > I hope it's ok to post job openings here. So long as people who program in Perl aren't disqualified from applying :-) -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From shalabh.sharma7 at gmail.com Thu Jun 10 20:40:34 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Thu, 10 Jun 2010 16:40:34 -0400 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: Hi Veronica, You can also download the refseq release catalog. ftp://ftp.ncbi.nih.gov/refseq/release/release-catalog/ It contains all the information like GI and taxaIDs. With the help of a simple script you can parse the required information. Hope this helps. Thanks Shalabh Sharma On Thu, Jun 10, 2010 at 4:00 PM, Dave Messina wrote: > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_query > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their databases > from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (-l) > that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a Taxonomy > Id? I've seen that woth Bio::Taxonomy I can give a GI and get a Tax Id, but > not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Thu Jun 10 21:11:50 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:11:50 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Eutils will do it with the right query: use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', -db => 'nucleotide', -term => 'txid9940[Organism:noexp]', -email => 'mymail at foo.bar', -retmax => 1000000); # query hits print "Count = ",$factory->get_count,"\n"; # UIDs my @ids = $factory->get_ids; --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, 11 June 2010 8:01 a.m. > To: armendarez77 at hotmail.com > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > Hi Veronica, > > These days when you run BLAST at the NCBI server, you're running BLAST+, > which is their complete rewrite of (and replacement for) BLAST. > > You can also download BLAST+ and do pretty much everything on your local > machine that you can do on their server, including limit by taxonomy. > > I think this is the right parameter: > > http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > ry > > Incidentally, BLAST+ has this awesome feature whereby you can, from the > command line, run searches remotely on their server against their > databases from the command line, just by adding the --remote flag. > > > (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by > the way.) > > Dave > > > > On Jun 10, 2010, at 4:54 PM, wrote: > > > > > Hello, > > > > Is there a BioPerl method that will give a list of GIs for a specified > NCBI taxonomy Id? > > > > I've previously tried using Urlapi to BLAST primers against the nr > database on the NCBI server, but recently I keep getting a > > 'Bad Gateway' error. While my system admin is looking into this, I've > > decided to go another route. Therefore, I've downloaded the NCBI nr > database. > > > > The problem I've run into is restricting the BLAST against the nr > database to a subset of sequences. The NCBI Blast tools have an option (- > l) that does this, but it requires a list of GI's. > > > > When I was using Urlapi, I restricted sequences using Taxonomy Ids > (Entrez Query). Therefore, is there a way to get all GIs within a > Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a > Tax Id, but not the reverse. > > > > > > Thank you, > > > > Veronica > > > > > > > > > > _________________________________________________________________ > > Hotmail is redefining busy with tools for the New Busy. Get more from > your inbox. > > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > :WL:en-US:WM_HMP:042010_2 > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From cjfields at illinois.edu Thu Jun 10 21:35:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 16:35:48 -0500 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: You can get up-to-date files mapping GI to TaxID here (nr and nt): ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ chris On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > Eutils will do it with the right query: > > > > > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > -db => 'nucleotide', > -term => 'txid9940[Organism:noexp]', > -email => 'mymail at foo.bar', > -retmax => 1000000); > > # query hits > print "Count = ",$factory->get_count,"\n"; > # UIDs > my @ids = $factory->get_ids; > > > --Russell > > >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- >> bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, 11 June 2010 8:01 a.m. >> To: armendarez77 at hotmail.com >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID >> >> Hi Veronica, >> >> These days when you run BLAST at the NCBI server, you're running BLAST+, >> which is their complete rewrite of (and replacement for) BLAST. >> >> You can also download BLAST+ and do pretty much everything on your local >> machine that you can do on their server, including limit by taxonomy. >> >> I think this is the right parameter: >> >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que >> ry >> >> Incidentally, BLAST+ has this awesome feature whereby you can, from the >> command line, run searches remotely on their server against their >> databases from the command line, just by adding the --remote flag. >> >> >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, by >> the way.) >> >> Dave >> >> >> >> On Jun 10, 2010, at 4:54 PM, wrote: >> >>> >>> Hello, >>> >>> Is there a BioPerl method that will give a list of GIs for a specified >> NCBI taxonomy Id? >>> >>> I've previously tried using Urlapi to BLAST primers against the nr >> database on the NCBI server, but recently I keep getting a >>> 'Bad Gateway' error. While my system admin is looking into this, I've >>> decided to go another route. Therefore, I've downloaded the NCBI nr >> database. >>> >>> The problem I've run into is restricting the BLAST against the nr >> database to a subset of sequences. The NCBI Blast tools have an option (- >> l) that does this, but it requires a list of GI's. >>> >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids >> (Entrez Query). Therefore, is there a way to get all GIs within a >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get a >> Tax Id, but not the reverse. >>> >>> >>> Thank you, >>> >>> Veronica >>> >>> >>> >>> >>> _________________________________________________________________ >>> Hotmail is redefining busy with tools for the New Busy. Get more from >> your inbox. >>> >> http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON >> :WL:en-US:WM_HMP:042010_2 >>> _______________________________________________ >>> Bioperl-l mailing list >>> Bioperl-l at lists.open-bio.org >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > ======================================================================= > Attention: The information contained in this message and/or attachments > from AgResearch Limited is intended only for the persons or entities > to which it is addressed and may contain confidential and/or privileged > material. Any review, retransmission, dissemination or other use of, or > taking of any action in reliance upon, this information by persons or > entities other than the intended recipients is prohibited by AgResearch > Limited. If you have received this message in error, please notify the > sender immediately. > ======================================================================= > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Thu Jun 10 21:43:55 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 09:43:55 +1200 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: References: <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se> <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> That's the way I usually do it as NCBI/eUtils can be a bit flakey. Not BioPerls fault of course ;-) zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' --Russell > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, 11 June 2010 9:36 a.m. > To: Smithies, Russell > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > bio.org' > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > chris > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > Eutils will do it with the right query: > > > > > > > > > > use Bio::DB::EUtilities; > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > -db => 'nucleotide', > > -term => 'txid9940[Organism:noexp]', > > -email => 'mymail at foo.bar', > > -retmax => 1000000); > > > > # query hits > > print "Count = ",$factory->get_count,"\n"; > > # UIDs > > my @ids = $factory->get_ids; > > > > > > --Russell > > > > > >> -----Original Message----- > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > >> Sent: Friday, 11 June 2010 8:01 a.m. > >> To: armendarez77 at hotmail.com > >> Cc: bioperl-l at lists.open-bio.org > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > >> > >> Hi Veronica, > >> > >> These days when you run BLAST at the NCBI server, you're running > BLAST+, > >> which is their complete rewrite of (and replacement for) BLAST. > >> > >> You can also download BLAST+ and do pretty much everything on your > local > >> machine that you can do on their server, including limit by taxonomy. > >> > >> I think this is the right parameter: > >> > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > >> ry > >> > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > >> command line, run searches remotely on their server against their > >> databases from the command line, just by adding the --remote flag. > >> > >> > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > by > >> the way.) > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 4:54 PM, wrote: > >> > >>> > >>> Hello, > >>> > >>> Is there a BioPerl method that will give a list of GIs for a specified > >> NCBI taxonomy Id? > >>> > >>> I've previously tried using Urlapi to BLAST primers against the nr > >> database on the NCBI server, but recently I keep getting a > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > >> database. > >>> > >>> The problem I've run into is restricting the BLAST against the nr > >> database to a subset of sequences. The NCBI Blast tools have an option > (- > >> l) that does this, but it requires a list of GI's. > >>> > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > >> (Entrez Query). Therefore, is there a way to get all GIs within a > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > a > >> Tax Id, but not the reverse. > >>> > >>> > >>> Thank you, > >>> > >>> Veronica > >>> > >>> > >>> > >>> > >>> _________________________________________________________________ > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > >> your inbox. > >>> > >> > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > >> :WL:en-US:WM_HMP:042010_2 > >>> _______________________________________________ > >>> Bioperl-l mailing list > >>> Bioperl-l at lists.open-bio.org > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > ======================================================================= > > Attention: The information contained in this message and/or attachments > > from AgResearch Limited is intended only for the persons or entities > > to which it is addressed and may contain confidential and/or privileged > > material. Any review, retransmission, dissemination or other use of, or > > taking of any action in reliance upon, this information by persons or > > entities other than the intended recipients is prohibited by AgResearch > > Limited. If you have received this message in error, please notify the > > sender immediately. > > ======================================================================= > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jay at jays.net Fri Jun 11 01:05:29 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 10 Jun 2010 20:05:29 -0500 Subject: [Bioperl-l] Regulars on IRC - GMT offsets, locations Message-ID: <69077B6F-6C31-4094-AEA8-1446C8DCABBF@jays.net> I added GMT offsets and locations. I didn't have all the info, so I made some of them up. For your correction: http://bioperl.org/wiki/IRC#Regulars_on_IRC ptl is my favorite fake location. :) Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From pengyu.ut at gmail.com Fri Jun 11 03:27:11 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Thu, 10 Jun 2010 22:27:11 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed Message-ID: Hi, I'm trying to get the pubmed ids from the following link. I use the code pasted at the end of the mail (the output is pasted as well). Note that more ids than necessary are returned. Then I try to use the option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let me know how to get the correct download of the ids in the following page by bioperl EUtilities? http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 -- Regards, Peng $ cat main.pl #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n"; print $factory->get_Response->content; $ ./main.pl 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 gene 6476 pubmed gene_pubmed 19416921 19121318 17194452 16802690 16543230 16344560 16329100 15944403 15522234 14724820 12477932 11340066 11329013 11003604 10903344 9092938 8609217 8521865 7566098 3925457 3896809 3178143 2962903 1717481 1677636 1560017 1353958 pubmed gene_pubmed_citedinomim 16329100 14724820 14276572 11340066 10903344 8648532 8648527 8609217 8576798 8118103 7371476 6357634 6082247 5848222 5436545 5333958 5075694 5041318 5015965 4952790 4742566 4579420 4164045 3925457 3807985 3553946 3403721 3178143 2962903 1717481 1560017 1353958 1256470 pubmed gene_pubmed_rif 19121318 17194452 16802690 16543230 16329100 15944403 15522234 8521865 From cjfields at illinois.edu Fri Jun 11 03:48:37 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 10 Jun 2010 22:48:37 -0500 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <4DD0E356-4218-4808-B5E5-76D6851DAE82@illinois.edu> Limit the IDs down to a specific dbfrom-db link using -linkname, otherwise it assumes all links and just gloms everything together (yes, pretty helpful of them). Here's the link for those: http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/entrezlinks.html Make sure to use your real email if you aren't already (you'll likely be IP banned otherwise). chris #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'elink', -db => 'pubmed', -dbfrom => 'gene', -linkname => 'gene_pubmed', -email => 'mymail at foo.bar', -id => 6476, ); print join(',', $factory->get_ids), "\n" On Jun 10, 2010, at 10:27 PM, Peng Yu wrote: > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,8609217,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,5075694,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946,3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452,16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From Russell.Smithies at agresearch.co.nz Fri Jun 11 03:52:36 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Fri, 11 Jun 2010 15:52:36 +1200 Subject: [Bioperl-l] Error when using EUtilities to download elink with parameter LinkName=gene_pubmed In-Reply-To: References: Message-ID: <18DF7D20DFEC044098A1062202F5FFF32DC257E727@exchsth.agresearch.co.nz> I suspect it's not possible without getting ASN.1 back and parsing that. As you already have a working URL, why not use LWP? use LWP::Simple; my $content = get("http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=gene_pubmed&from_uid=6476") or die $!; my @ids = grep(/\d+<\/Id>/,(split("\n",$content)); --Russell > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > bounces at lists.open-bio.org] On Behalf Of Peng Yu > Sent: Friday, 11 June 2010 3:27 p.m. > To: bioperl-l at lists.open-bio.org > Subject: [Bioperl-l] Error when using EUtilities to download elink with > parameter LinkName=gene_pubmed > > Hi, > > I'm trying to get the pubmed ids from the following link. I use the > code pasted at the end of the mail (the output is pasted as well). > Note that more ids than necessary are returned. Then I try to use the > option -dbfrom='gene_pubmed'. But it raises exceptions. Could you let > me know how to get the correct download of the ids in the following > page by bioperl EUtilities? > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?db=gene&LinkName=g > ene_pubmed&from_uid=6476 > > -- > Regards, > Peng > > $ cat main.pl > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'elink', > -db => 'pubmed', > -dbfrom => 'gene', > -email => 'mymail at foo.bar', > -id => 6476, > ); > > print join(',', $factory->get_ids), "\n"; > print $factory->get_Response->content; > > $ ./main.pl > 19416921,19121318,17194452,16802690,16543230,16344560,16329100,15944403,15 > 522234,14724820,12477932,11340066,11329013,11003604,10903344,9092938,86092 > 17,8521865,7566098,3925457,3896809,3178143,2962903,1717481,1677636,1560017 > ,1353958,16329100,14724820,14276572,11340066,10903344,8648532,8648527,8609 > 217,8576798,8118103,7371476,6357634,6082247,5848222,5436545,5333958,507569 > 4,5041318,5015965,4952790,4742566,4579420,4164045,3925457,3807985,3553946, > 3403721,3178143,2962903,1717481,1560017,1353958,1256470,19121318,17194452, > 16802690,16543230,16329100,15944403,15522234,8521865 > > 2009//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_090910.dtd"> > > > > gene > > 6476 > > > pubmed > gene_pubmed > > 19416921 > > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16344560 > > > 16329100 > > > 15944403 > > > 15522234 > > > 14724820 > > > 12477932 > > > 11340066 > > > 11329013 > > > 11003604 > > > 10903344 > > > 9092938 > > > 8609217 > > > 8521865 > > > 7566098 > > > 3925457 > > > 3896809 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1677636 > > > 1560017 > > > 1353958 > > > > pubmed > gene_pubmed_citedinomim > > 16329100 > > > 14724820 > > > 14276572 > > > 11340066 > > > 10903344 > > > 8648532 > > > 8648527 > > > 8609217 > > > 8576798 > > > 8118103 > > > 7371476 > > > 6357634 > > > 6082247 > > > 5848222 > > > 5436545 > > > 5333958 > > > 5075694 > > > 5041318 > > > 5015965 > > > 4952790 > > > 4742566 > > > 4579420 > > > 4164045 > > > 3925457 > > > 3807985 > > > 3553946 > > > 3403721 > > > 3178143 > > > 2962903 > > > 1717481 > > > 1560017 > > > 1353958 > > > 1256470 > > > > pubmed > gene_pubmed_rif > > 19121318 > > > 17194452 > > > 16802690 > > > 16543230 > > > 16329100 > > > 15944403 > > > 15522234 > > > 8521865 > > > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From armendarez77 at hotmail.com Fri Jun 11 05:08:22 2010 From: armendarez77 at hotmail.com (armendarez77 at hotmail.com) Date: Thu, 10 Jun 2010 22:08:22 -0700 Subject: [Bioperl-l] Get GIs from Taxonomy ID In-Reply-To: <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> References: , <1C8E211A-F676-47C4-AB24-E01F60C8F48E@sbc.su.se>, <18DF7D20DFEC044098A1062202F5FFF32DC257E462@exchsth.agresearch.co.nz>, , <18DF7D20DFEC044098A1062202F5FFF32DC257E4AA@exchsth.agresearch.co.nz> Message-ID: Thank you for all of the choices. The 'zgrep' command works a treat. Veronica > From: Russell.Smithies at agresearch.co.nz > To: cjfields at illinois.edu > CC: David.Messina at sbc.su.se; armendarez77 at hotmail.com; bioperl-l at lists.open-bio.org > Date: Fri, 11 Jun 2010 09:43:55 +1200 > Subject: RE: [Bioperl-l] Get GIs from Taxonomy ID > > That's the way I usually do it as NCBI/eUtils can be a bit flakey. > Not BioPerls fault of course ;-) > > zgrep -w 9940 gi_taxid_nucl.dmp.gz | awk '{print $1}' > > > > --Russell > > > -----Original Message----- > > From: Chris Fields [mailto:cjfields at illinois.edu] > > Sent: Friday, 11 June 2010 9:36 a.m. > > To: Smithies, Russell > > Cc: 'Dave Messina'; 'armendarez77 at hotmail.com'; 'bioperl-l at lists.open- > > bio.org' > > Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > > > You can get up-to-date files mapping GI to TaxID here (nr and nt): > > > > ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/ > > > > chris > > > > On Jun 10, 2010, at 4:11 PM, Smithies, Russell wrote: > > > > > Eutils will do it with the right query: > > > > > > > > > > > > > > > use Bio::DB::EUtilities; > > > > > > my $factory = Bio::DB::EUtilities->new(-eutil => 'esearch', > > > -db => 'nucleotide', > > > -term => 'txid9940[Organism:noexp]', > > > -email => 'mymail at foo.bar', > > > -retmax => 1000000); > > > > > > # query hits > > > print "Count = ",$factory->get_count,"\n"; > > > # UIDs > > > my @ids = $factory->get_ids; > > > > > > > > > --Russell > > > > > > > > >> -----Original Message----- > > >> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l- > > >> bounces at lists.open-bio.org] On Behalf Of Dave Messina > > >> Sent: Friday, 11 June 2010 8:01 a.m. > > >> To: armendarez77 at hotmail.com > > >> Cc: bioperl-l at lists.open-bio.org > > >> Subject: Re: [Bioperl-l] Get GIs from Taxonomy ID > > >> > > >> Hi Veronica, > > >> > > >> These days when you run BLAST at the NCBI server, you're running > > BLAST+, > > >> which is their complete rewrite of (and replacement for) BLAST. > > >> > > >> You can also download BLAST+ and do pretty much everything on your > > local > > >> machine that you can do on their server, including limit by taxonomy. > > >> > > >> I think this is the right parameter: > > >> > > >> http://www.ncbi.nlm.nih.gov/blast/html/blastcgihelp.html#entrez_que > > >> ry > > >> > > >> Incidentally, BLAST+ has this awesome feature whereby you can, from the > > >> command line, run searches remotely on their server against their > > >> databases from the command line, just by adding the --remote flag. > > >> > > >> > > >> (You can run BLAST+ via the BioPerl wrapper module StandAloneBlastPlus, > > by > > >> the way.) > > >> > > >> Dave > > >> > > >> > > >> > > >> On Jun 10, 2010, at 4:54 PM, wrote: > > >> > > >>> > > >>> Hello, > > >>> > > >>> Is there a BioPerl method that will give a list of GIs for a specified > > >> NCBI taxonomy Id? > > >>> > > >>> I've previously tried using Urlapi to BLAST primers against the nr > > >> database on the NCBI server, but recently I keep getting a > > >>> 'Bad Gateway' error. While my system admin is looking into this, I've > > >>> decided to go another route. Therefore, I've downloaded the NCBI nr > > >> database. > > >>> > > >>> The problem I've run into is restricting the BLAST against the nr > > >> database to a subset of sequences. The NCBI Blast tools have an option > > (- > > >> l) that does this, but it requires a list of GI's. > > >>> > > >>> When I was using Urlapi, I restricted sequences using Taxonomy Ids > > >> (Entrez Query). Therefore, is there a way to get all GIs within a > > >> Taxonomy Id? I've seen that woth Bio::Taxonomy I can give a GI and get > > a > > >> Tax Id, but not the reverse. > > >>> > > >>> > > >>> Thank you, > > >>> > > >>> Veronica > > >>> > > >>> > > >>> > > >>> > > >>> _________________________________________________________________ > > >>> Hotmail is redefining busy with tools for the New Busy. Get more from > > >> your inbox. > > >>> > > >> > > http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON > > >> :WL:en-US:WM_HMP:042010_2 > > >>> _______________________________________________ > > >>> Bioperl-l mailing list > > >>> Bioperl-l at lists.open-bio.org > > >>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >> > > >> > > >> _______________________________________________ > > >> Bioperl-l mailing list > > >> Bioperl-l at lists.open-bio.org > > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > ======================================================================= > > > Attention: The information contained in this message and/or attachments > > > from AgResearch Limited is intended only for the persons or entities > > > to which it is addressed and may contain confidential and/or privileged > > > material. Any review, retransmission, dissemination or other use of, or > > > taking of any action in reliance upon, this information by persons or > > > entities other than the intended recipients is prohibited by AgResearch > > > Limited. If you have received this message in error, please notify the > > > sender immediately. > > > ======================================================================= > > > > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > _________________________________________________________________ The New Busy is not the too busy. Combine all your e-mail accounts with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multiaccount&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_4 From sdavis2 at mail.nih.gov Fri Jun 11 14:36:45 2010 From: sdavis2 at mail.nih.gov (Sean Davis) Date: Fri, 11 Jun 2010 10:36:45 -0400 Subject: [Bioperl-l] [OT] Bioconductor Conference Message-ID: Sorry for the slightly off-topic message, but I think there are plenty of overlapping interests between bioperl and bioconductor. I wanted to announce the upcoming Bioconductor 2010 conference. Besides the email below, if there are questions that I can answer, let me know. Thanks, Sean ------------------- BioC 2010 is coming up quickly, and we urge you to sign up today! We're meeting July 29-30 (Developer Day July 28) in Seattle. There is a terrific line-up of speakers (see below) and the work shops are being finalized (see https://secure.bioconductor.org/BioC2010/labs.php for a preliminary list, subject to change). Also, we have introduced a special 'Flow Cytometery' track. This provides access to the Friday afternoon practicals sessions. These sessions will include, among others, practicals relevant to cytometry. Finally, the deadline for scholarship applications is June 15, just a few days away! Questions? Send email to biocworkshop at fhcrc.org Thursday 8:30 - 9:15 Atul Butte, Stanford Center for Biomedical Informatics Research. Exploring Genomic Medicine Through Integrative Bioinformatics. 9:15 - 10:00 Stephen Friend, SAGE Bionetworks. Risks and Opportunities for Disease Models based on Integrative Genomic Approaches. 10:30 - 11:15 Jay Shendure, University of Washington. Exome sequencing and human genetics. 11:15 - 12:00 To be confirmed. Friday 8:30 - 9:15 Simon Tavar?, University of Southern California. 9:15 - 10:00 Paul Flicek, European Bioinformatics Institute. Generation gap: How existing bioinformatics resources are adapting to high-throughput sequencing. 10:30 - 11:15 Lior Pachter, University of California, Berkeley. 11:15 - 12:00 Simon Anders, European Bioinformatics Institute. Inference of differential signal in high throughput sequencing count data. From jessica.sun at gmail.com Fri Jun 11 16:26:12 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:26:12 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: Great ! Yet, how do you add this SNP as an Feature tag named as Variation into the gbk file format automatically? thx On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > Nice, Chris! > > I've added it to the EUtils cookbook. > > Dave > > > > On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > > > It's much easier to work with the GI than the accession. NCBI > unfortunately just recently 'broke' their acc->gi stuff via efetch; you have > to use rettype='seqid' and munge ASN.1 to get everything (though it is nice > in a way for ID mapping). > > > > After the initial step of grabbing the GI for NG_011506, though, you can > use elink to grab the SNP IDs, then use efetch to get the actual SNP files, > or esummary for the summary info. > > > > #!/usr/bin/perl -w > > > > use Modern::Perl; > > use Bio::DB::EUtilities; > > > > my $id = '224809339'; > > > > my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > > -id => $id, > > -email => 'setyourown at foo.bar', > > -verbose => 1, > > -dbfrom => 'nuccore', > > -db => 'snp', > > -cmd => 'neighbor_history', > > ); > > > > my $hist = $eutil->next_History || die "No history data returned"; > > > > $eutil->set_parameters(-eutil => 'efetch', > > -history => $hist, > > -retmode => 'text', > > # 'chr', 'flt', 'brief', 'rsr', 'docset' > > -rettype => 'chr' > > ); > > > > $eutil->get_Response(-file => 'snps.txt'); > > > > # or ... > > > > $eutil->set_parameters(-eutil => 'esummary', > > -history => $hist, > > ); > > > > $eutil->print_all; > > > > # chris > > > > On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > > > >> Thanks Dave. > >> the variation information is not present in the version of NG_011506 I > found > >> at Genbank.) -- Yes, then if you click on the right side customer view > there > >> is a check box Features added by NCBI :209 snps, if you check that it > will > >> add all the variations in the gbk fomat. I found this would be a neat > >> feature if it can automatically load by bioperl with an option turn on. > >> > >> > >> > >> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >wrote: > >> > >>> Hi Jessica, > >>> > >>> Please keep the BioPerl list on the Cc line so everyone can follow > along. > >>> > >>> > >>>> Follow your approach it did not seem to me you can have Variation tag > >>> included which > >>>> list the know dbSNP location, id and allele changes? > >>> > >>> Ah okay, I assumed the file you attached was obtained directly from > Genbank > >>> and that the variation info therein was already included. (It appears > that's > >>> not the case ? the variation information is not present in the version > of > >>> NG_011506 I found at Genbank.) > >>> > >>> If you want to include your own custom information in a genbank file, > >>> you'll have to pull it out of dbSNP (or wherever the variation info > is). > >>> There are a couple of scripts that might be able to help with that > (search > >>> for snp): > >>> > >>> http://www.bioperl.org/wiki/Bioperl_scripts > >>> > >>> > >>> You can then insert them into a RichSeq object as features and output > in > >>> genbank format. For that part, see the HOWTO: > >>> > >>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>> > >>> > >>> Dave > >>> > >>> > >> > >> > >> -- > >> Jessica Jingping Sun > >> > >> _______________________________________________ > >> Bioperl-l mailing list > >> Bioperl-l at lists.open-bio.org > >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > -- Jessica Jingping Sun From cjfields at illinois.edu Fri Jun 11 16:30:59 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 11 Jun 2010 11:30:59 -0500 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> Message-ID: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. chris On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > into the gbk file format automatically? > > thx > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina wrote: > >> Nice, Chris! >> >> I've added it to the EUtils cookbook. >> >> Dave >> >> >> >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: >> >>> It's much easier to work with the GI than the accession. NCBI >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you have >> to use rettype='seqid' and munge ASN.1 to get everything (though it is nice >> in a way for ID mapping). >>> >>> After the initial step of grabbing the GI for NG_011506, though, you can >> use elink to grab the SNP IDs, then use efetch to get the actual SNP files, >> or esummary for the summary info. >>> >>> #!/usr/bin/perl -w >>> >>> use Modern::Perl; >>> use Bio::DB::EUtilities; >>> >>> my $id = '224809339'; >>> >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', >>> -id => $id, >>> -email => 'setyourown at foo.bar', >>> -verbose => 1, >>> -dbfrom => 'nuccore', >>> -db => 'snp', >>> -cmd => 'neighbor_history', >>> ); >>> >>> my $hist = $eutil->next_History || die "No history data returned"; >>> >>> $eutil->set_parameters(-eutil => 'efetch', >>> -history => $hist, >>> -retmode => 'text', >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' >>> -rettype => 'chr' >>> ); >>> >>> $eutil->get_Response(-file => 'snps.txt'); >>> >>> # or ... >>> >>> $eutil->set_parameters(-eutil => 'esummary', >>> -history => $hist, >>> ); >>> >>> $eutil->print_all; >>> >>> # chris >>> >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: >>> >>>> Thanks Dave. >>>> the variation information is not present in the version of NG_011506 I >> found >>>> at Genbank.) -- Yes, then if you click on the right side customer view >> there >>>> is a check box Features added by NCBI :209 snps, if you check that it >> will >>>> add all the variations in the gbk fomat. I found this would be a neat >>>> feature if it can automatically load by bioperl with an option turn on. >>>> >>>> >>>> >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >> wrote: >>>> >>>>> Hi Jessica, >>>>> >>>>> Please keep the BioPerl list on the Cc line so everyone can follow >> along. >>>>> >>>>> >>>>>> Follow your approach it did not seem to me you can have Variation tag >>>>> included which >>>>>> list the know dbSNP location, id and allele changes? >>>>> >>>>> Ah okay, I assumed the file you attached was obtained directly from >> Genbank >>>>> and that the variation info therein was already included. (It appears >> that's >>>>> not the case ? the variation information is not present in the version >> of >>>>> NG_011506 I found at Genbank.) >>>>> >>>>> If you want to include your own custom information in a genbank file, >>>>> you'll have to pull it out of dbSNP (or wherever the variation info >> is). >>>>> There are a couple of scripts that might be able to help with that >> (search >>>>> for snp): >>>>> >>>>> http://www.bioperl.org/wiki/Bioperl_scripts >>>>> >>>>> >>>>> You can then insert them into a RichSeq object as features and output >> in >>>>> genbank format. For that part, see the HOWTO: >>>>> >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation >>>>> >>>>> >>>>> Dave >>>>> >>>>> >>>> >>>> >>>> -- >>>> Jessica Jingping Sun >>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >> >> > > > -- > Jessica Jingping Sun > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jessica.sun at gmail.com Fri Jun 11 16:33:07 2010 From: jessica.sun at gmail.com (Jessica Sun) Date: Fri, 11 Jun 2010 12:33:07 -0400 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: That was what I thought as well. It will be very nice that it can be done within bioperl as well. On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the > result is either cached or run on-the-fly. When I retrieved the full-length > record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > > > thx > > > > > > On Thu, Jun 10, 2010 at 4:11 PM, Dave Messina >wrote: > > > >> Nice, Chris! > >> > >> I've added it to the EUtils cookbook. > >> > >> Dave > >> > >> > >> > >> On Jun 10, 2010, at 2:06 AM, Chris Fields wrote: > >> > >>> It's much easier to work with the GI than the accession. NCBI > >> unfortunately just recently 'broke' their acc->gi stuff via efetch; you > have > >> to use rettype='seqid' and munge ASN.1 to get everything (though it is > nice > >> in a way for ID mapping). > >>> > >>> After the initial step of grabbing the GI for NG_011506, though, you > can > >> use elink to grab the SNP IDs, then use efetch to get the actual SNP > files, > >> or esummary for the summary info. > >>> > >>> #!/usr/bin/perl -w > >>> > >>> use Modern::Perl; > >>> use Bio::DB::EUtilities; > >>> > >>> my $id = '224809339'; > >>> > >>> my $eutil = Bio::DB::EUtilities->new(-eutil => 'elink', > >>> -id => $id, > >>> -email => 'setyourown at foo.bar', > >>> -verbose => 1, > >>> -dbfrom => 'nuccore', > >>> -db => 'snp', > >>> -cmd => 'neighbor_history', > >>> ); > >>> > >>> my $hist = $eutil->next_History || die "No history data returned"; > >>> > >>> $eutil->set_parameters(-eutil => 'efetch', > >>> -history => $hist, > >>> -retmode => 'text', > >>> # 'chr', 'flt', 'brief', 'rsr', 'docset' > >>> -rettype => 'chr' > >>> ); > >>> > >>> $eutil->get_Response(-file => 'snps.txt'); > >>> > >>> # or ... > >>> > >>> $eutil->set_parameters(-eutil => 'esummary', > >>> -history => $hist, > >>> ); > >>> > >>> $eutil->print_all; > >>> > >>> # chris > >>> > >>> On Jun 9, 2010, at 1:37 PM, Jessica Sun wrote: > >>> > >>>> Thanks Dave. > >>>> the variation information is not present in the version of NG_011506 I > >> found > >>>> at Genbank.) -- Yes, then if you click on the right side customer view > >> there > >>>> is a check box Features added by NCBI :209 snps, if you check that it > >> will > >>>> add all the variations in the gbk fomat. I found this would be a neat > >>>> feature if it can automatically load by bioperl with an option turn > on. > >>>> > >>>> > >>>> > >>>> On Wed, Jun 9, 2010 at 1:51 PM, Dave Messina >>> wrote: > >>>> > >>>>> Hi Jessica, > >>>>> > >>>>> Please keep the BioPerl list on the Cc line so everyone can follow > >> along. > >>>>> > >>>>> > >>>>>> Follow your approach it did not seem to me you can have Variation > tag > >>>>> included which > >>>>>> list the know dbSNP location, id and allele changes? > >>>>> > >>>>> Ah okay, I assumed the file you attached was obtained directly from > >> Genbank > >>>>> and that the variation info therein was already included. (It appears > >> that's > >>>>> not the case ? the variation information is not present in the > version > >> of > >>>>> NG_011506 I found at Genbank.) > >>>>> > >>>>> If you want to include your own custom information in a genbank file, > >>>>> you'll have to pull it out of dbSNP (or wherever the variation info > >> is). > >>>>> There are a couple of scripts that might be able to help with that > >> (search > >>>>> for snp): > >>>>> > >>>>> http://www.bioperl.org/wiki/Bioperl_scripts > >>>>> > >>>>> > >>>>> You can then insert them into a RichSeq object as features and output > >> in > >>>>> genbank format. For that part, see the HOWTO: > >>>>> > >>>>> http://www.bioperl.org/wiki/HOWTO:Feature-Annotation > >>>>> > >>>>> > >>>>> Dave > >>>>> > >>>>> > >>>> > >>>> > >>>> -- > >>>> Jessica Jingping Sun > >>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >> > >> > > > > > > -- > > Jessica Jingping Sun > > > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- Jessica Jingping Sun From David.Messina at sbc.su.se Fri Jun 11 21:43:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 11 Jun 2010 23:43:35 +0200 Subject: [Bioperl-l] Get variation included in genbank file In-Reply-To: References: <4D4FC70E-119B-43FF-B00F-46DD4C4FCA45@sbc.su.se> <4A10FAA1-304A-49EF-A8D8-B80CB935CD2B@sbc.su.se> <69A96200-5614-4674-9BB8-5DFEB2768E3B@illinois.edu> <171A0032-130B-49AE-AA69-F20910B02476@illinois.edu> Message-ID: <2332DA3A-27E0-478A-8FC6-910A9E087BB3@sbc.su.se> On Jun 11, 2010, at 6:33 PM, Jessica Sun wrote: > That was what I thought as well. It will be very nice that it can be done within bioperl as well. Just to clarify, it can be done within BioPerl, but manually. That is, you'll have to take the SNP information you have retrieved using the code Chris posted and then add it as features to the RichSeq object, which is BioPerl's internal representation of a Genbank record. I don't think that this complicated set of procedures would fit very neatly into BioPerl as a more automatic thing, but of course if anyone is interested in coding it up we're more than happy to help find a place for it... Dave > > On Fri, Jun 11, 2010 at 12:30 PM, Chris Fields wrote: > My guess is that NCBI has something that does this internally, and the result is either cached or run on-the-fly. When I retrieved the full-length record from NCBI it lacked SNPs as well. > > chris > > On Jun 11, 2010, at 11:26 AM, Jessica Sun wrote: > > > Great ! Yet, how do you add this SNP as an Feature tag named as Variation > > into the gbk file format automatically? > > From ross at cuhk.edu.hk Mon Jun 14 12:48:28 2010 From: ross at cuhk.edu.hk (Ross KK Leung) Date: Mon, 14 Jun 2010 20:48:28 +0800 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> Message-ID: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> If I have an accession number for an mRNA/cDNA/gene (e.g. http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I retrieve the genbank file and parse /dbxref then I may sometimes be able to get some extra information but then the page is not readily usable, e.g. http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo rt&list_uids=24377 is there any way to automatically retrieve its upstream & downstream genomic sequence (e.g. 500bp)? From David.Messina at sbc.su.se Mon Jun 14 13:57:30 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Mon, 14 Jun 2010 15:57:30 +0200 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <20B7D7C0-137D-4EFB-9E7B-2DB0F5EB6785@sbc.su.se> Hi Ross, The code examples here should work: http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook#esummary_-.3E_efetch except you'll need to change the seq_start and seq_stop parameters to include your extra bases. i.e. -seq_start => $start + 1 - 500, -seq_stop => $end + 1 + 500, I haven't tested this ? you may need to take the strand information into account when adding or subtracting from the start and end positions. DAve From jay at jays.net Mon Jun 14 16:30:57 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 11:30:57 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() Message-ID: Hola, I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be adding one unless someone points out that this is a bad idea for some reason. Also, this seems insufficient for a branch, so it'll just be a single commit to master unless someone slaps me. Thanks, Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From lincoln.stein at gmail.com Mon Jun 14 16:35:28 2010 From: lincoln.stein at gmail.com (Lincoln Stein) Date: Mon, 14 Jun 2010 12:35:28 -0400 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: I suggest that you use Data::Dumper to implement clone (or alternatively Storable's dclone() method). I just had a look at how I did the clone in Lite, and it is a bit fragile if someone subclasses Lite. I also think there is a Clone module in CPAN. Lincoln On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > Hola, > > I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite > has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be > adding one unless someone points out that this is a bad idea for some > reason. > > Also, this seems insufficient for a branch, so it'll just be a single > commit to master unless someone slaps me. > > Thanks, > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- Lincoln D. Stein Director, Informatics and Biocomputing Platform Ontario Institute for Cancer Research 101 College St., Suite 800 Toronto, ON, Canada M5G0A3 416 673-8514 Assistant: Renata Musa From cjfields at illinois.edu Mon Jun 14 16:58:40 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 14 Jun 2010 11:58:40 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: <0BF96232-1390-42CD-9515-06A5D66C3B2E@illinois.edu> Both Data::Dumper and Storable are part of perl core now. I've used Clone.pm w/o problems in some of my code, and wouldn't have a problem adding that as a dependency for bioperl (it's currently listed as a recommended module). chris On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). I just had a look at how I did the clone in > Lite, and it is a bit fragile if someone subclasses Lite. > > I also think there is a Clone module in CPAN. > > Lincoln > > On Mon, Jun 14, 2010 at 12:30 PM, Jay Hannah wrote: > >> Hola, >> >> I seem to be in need of an easy way to copy features. Bio::SeqFeature::Lite >> has a clone() method, but Bio::SeqFeature::Generic doesn't. So I'll be >> adding one unless someone points out that this is a bad idea for some >> reason. >> >> Also, this seems insufficient for a branch, so it'll just be a single >> commit to master unless someone slaps me. >> >> Thanks, >> >> Jay Hannah >> http://biodoc.ist.unomaha.edu/wiki/User:Jhannah >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > > -- > Lincoln D. Stein > Director, Informatics and Biocomputing Platform > Ontario Institute for Cancer Research > 101 College St., Suite 800 > Toronto, ON, Canada M5G0A3 > 416 673-8514 > Assistant: Renata Musa > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jason at bioperl.org Mon Jun 14 18:48:11 2010 From: jason at bioperl.org (Jason Stajich) Date: Mon, 14 Jun 2010 14:48:11 -0400 Subject: [Bioperl-l] Script to Calculate Pairwise Ka,Ks In-Reply-To: References: Message-ID: <4C16796B.4090909@bioperl.org> I think you can also just add that clustal dir in your PATH. I'm fwding to bioperl list for help as I don't have time to debug right now, sorry. -jason Haktan Suren wrote, On 6/14/10 1:50 PM: > Dear Jason Stajich, > > First of all, I would like to thank you for the great script that you > wrote. However I wasn't able to run it because it gives me the > fallowing error. I have looked into web but haven't found the solution > yet. I appreciate if you could provide me any kind of help. > > The error is > Could not find the executable for clustalw, make sure you have > installed it and have either set CLUSTALWDIR or it is in your PATH at > kaks2.pl line 108. > For your information, I have downloaded clustalw-2.0.12-macosx.dmg > > from http://www.clustal.org/download/current/ and pointed this > software at the very beginning of the code like > BEGIN { $ENV{CLUSTALDIR} = > '/Users/hsuren/Downloads/BioPerl-1.6.1/Bio/Tools/Run/Alignment/clustalw/clustalw2/' > } > But it still gives me the same error. I am attaching the perl script > as well incase you need. > > > ------------------------------------------------------------------------ > > > Best Regards, > Haktan Suren > From jay at jays.net Mon Jun 14 20:30:05 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 14 Jun 2010 15:30:05 -0500 Subject: [Bioperl-l] Bio::SeqFeature::Generic clone() In-Reply-To: References: Message-ID: On Jun 14, 2010, at 11:35 AM, Lincoln Stein wrote: > I suggest that you use Data::Dumper to implement clone (or alternatively > Storable's dclone() method). Here's my stab-so-far at using Storable dclone(): http://github.com/bioperl/bioperl-live/tree/topic/jhannah-seqfeature-clone Any and all feedback most welcome. I've never modified Root.pm before. Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From roi.brodo at hotmail.com Wed Jun 16 07:10:45 2010 From: roi.brodo at hotmail.com (Roi Brodo) Date: Wed, 16 Jun 2010 07:10:45 +0000 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA Message-ID: Hello, Suppose I have some circular DNA RefSeq in a Genbank format. I would like to create a new (smaller) Genbank file (both features and sequence) containing only a range of nucleotides from the original file, but a range tha overlaps the "end". For example, if my original Genbank spans 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, 1-100,000), so the new Genbank file will actually contain 300,000 bp from the circular DNA. How can I do that? Again, my input is a Genbank file and output should also be a Gebnank file. Thanks! - Roi _________________________________________________________________ The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 From roy.chaudhuri at gmail.com Wed Jun 16 10:07:35 2010 From: roy.chaudhuri at gmail.com (Roy Chaudhuri) Date: Wed, 16 Jun 2010 11:07:35 +0100 Subject: [Bioperl-l] Get a partial GenBank of a circular DNA In-Reply-To: References: Message-ID: <4C18A267.4050000@gmail.com> Hi Roi, You need the trunc_with_features and cat methods in Bio::SeqUtils (haven't tested this code but I think it should work): use Bio::SeqIO; use Bio::SeqUtils; my $seq=Bio::SeqIO->new(-file=>$ARGV[0], -format=>'genbank')->next_seq; my $first=Bio::SeqUtils->trunc_with_features($seq, 800000, 1000000); my $second=Bio::SeqUtils->trunc_with_features($seq, 1, 100000); Bio::SeqUtils->cat($first, $second); Bio::SeqIO->new(-format=>'genbank')->write_seq($first); Cheers. Roy. On 16/06/2010 08:10, Roi Brodo wrote: > > Hello, > > > > Suppose I have some circular DNA RefSeq in a Genbank format. I would > like to create a new (smaller) Genbank file (both features and sequence) > containing only a range of nucleotides from the original file, but a > range tha overlaps the "end". For example, if my original Genbank spans > 1,000,000 base (1-1,000,000) I would like to get join(800,000-1,000,000, > 1-100,000), so the new Genbank file will actually contain 300,000 bp > from the circular DNA. > > > > How can I do that? Again, my input is a Genbank file and output should > also be a Gebnank file. > > > > Thanks! > > - Roi > > > > > > > > > > > _________________________________________________________________ > The New Busy think 9 to 5 is a cute idea. Combine multiple calendars with Hotmail. > http://www.windowslive.com/campaign/thenewbusy?tile=multicalendar&ocid=PID28326::T:WLMTAGL:ON:WL:en-US:WM_HMP:042010_5 > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From kai.blin at biotech.uni-tuebingen.de Thu Jun 17 08:23:29 2010 From: kai.blin at biotech.uni-tuebingen.de (Kai Blin) Date: Thu, 17 Jun 2010 10:23:29 +0200 Subject: [Bioperl-l] Getting the HMMer3 parser integrated into the next BioPerl release, call for testing Message-ID: <1276763009.31442.8.camel@mikropc7.biotech.uni-tuebingen.de> Hi folks, in the past days, I've been working on the tests for the HMMer3 parser, and with my last commits all the tests are passing for all the output files I've seen. So I'd like to propose the bioperl-hmmer3[1] tree to be merged into the main tree for the next BioPerl release. Of course, if there's still some corner cases the parser doesn't handle that you're running into, please send me an output file showing the problem you're seeing, or, even better, send me a patch. :) Cheers, Kai [1] http://github.com/bioperl/bioperl-hmmer3 -- Dipl.-Inform. Kai Blin kai.blin at biotech.uni-tuebingen.de Interfakult?res Institut f?r Mikrobiologie und Infektionsmedizin Abteilung Mikrobiologie/Biotechnologie Eberhard-Karls-Universit?t T?bingen Auf der Morgenstelle 28 Phone : ++49 7071 29-78841 D-72076 T?bingen Fax : ++49 7071 29-5979 Deutschland Homepage: http://www.mikrobio.uni-tuebingen.de/ag_wohlleben From jun.yin at ucd.ie Thu Jun 17 10:24:50 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 11:24:50 +0100 Subject: [Bioperl-l] Interface of the method Message-ID: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin From tuco at pasteur.fr Thu Jun 17 11:49:18 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 13:49:18 +0200 Subject: [Bioperl-l] Bio module using Moose Message-ID: <4C1A0BBE.3060304@pasteur.fr> Hi guys, I developed some new modules for BioPerl under Bio::Restriction. However, I used Moose to help me out writing code. Do you think I could submit these modules to BioPerl to be later integrated, hopefully, the way they are written (with Moose dependency)? Cheers -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From cjfields at illinois.edu Thu Jun 17 13:12:30 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 08:12:30 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A0BBE.3060304@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: Emmanuel, I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: http://github.com/cjfields/biome This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. Let me know if you want to go with the first one, I can add you to the project. chris On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > Hi guys, > > I developed some new modules for BioPerl under Bio::Restriction. > However, I used Moose to help me out writing code. > Do you think I could submit these modules to BioPerl to be later > integrated, hopefully, the way they are written (with Moose dependency)? > > Cheers > > -- > ------------------------- > Emmanuel Quevillon > Biological Software and Databases Group > Institut Pasteur > +33 1 44 38 95 98 > tuco at_ pasteur dot fr > ------------------------- > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Thu Jun 17 13:42:08 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Thu, 17 Jun 2010 14:42:08 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <008101cb0e22$e1657230$a4305690$%yin@ucd.ie> BTW, I am a student in the Google Summer of Code 2010. I am currently working on refactoring the Bio::Align subsystem. If you are interested in this project, please visit my coding blog: http://gsoc2010-junyin.blogspot.com/ Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Jun Yin Sent: Thursday, June 17, 2010 11:25 AM To: bioperl-l at lists.open-bio.org Cc: jun.yin at ucd.ie Subject: [Bioperl-l] Interface of the method Hi, I am think of updating the methods in Bio::SimpleAlign to a more usable form. For example, the current method for remove_columns is: $aln->remove_columns([0,0],[6,8]); #remove the 1st, and 6th to 8th columns Or $aln->remove_columns(['mismatch','weak']); #remove the mismatched and weak columns And, select columns is by: $aln2 = $aln->slice(20,30); #select the 20th to 30th columns You may notice that even similar methods have difference ways to use, (the first uses references and the second only defines $start and $end). This may cause some confusion.So I propose that we should use a more consistent way for similar functions. For example, the methods of select_Seq select_columns remove_Seq remove_columns mask_columns . should have the same interface. One solution is $new_aln=$aln->select_Seq(1,3,5..10,15); #the user can select the first, third, fifth to tenth and fifteenth sequences at the same time But the problem is that it is hard to distinguish optional parameters from the method call. So I suggest, we can do $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") Or $new_aln=$aln->select_columns([2.25,34,52..60]) So that all the selections are based on an array reference, and the parameters are strings, thus easy to control the method. As the package is community based, I am glad to hear your suggestions before I change the Bio::SimpleAlign package. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From tuco at pasteur.fr Thu Jun 17 13:46:41 2010 From: tuco at pasteur.fr (Emmanuel Quevillon) Date: Thu, 17 Jun 2010 15:46:41 +0200 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> Message-ID: <4C1A2741.2080604@pasteur.fr> On 06/17/2010 03:12 PM, Chris Fields wrote: > Emmanuel, > > I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: > > 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > > http://github.com/cjfields/biome > Hi Chris, Yep I've seen it already from one of your email on the Moose list :) I can try plug my modules to your project, however my code might be not as evolved as yours, so it could need some improvements and tuning to run faster and better. > This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > > 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. > Well I don't really know. Let me think about it (between github and CPAN), I'll also need to read and understand carefully your biome project. Moreover, as already said in my previous emails, I am not very ease with Moose right now.... Anyway what I can do it to change my code to better fit with actual implementation of BioPerl 1.6 and send it to the team for later integration? I can also send you my Moosified version to have a look? Let me know Regards Emmanuel > Let me know if you want to go with the first one, I can add you to the project. > > chris > > On Jun 17, 2010, at 6:49 AM, Emmanuel Quevillon wrote: > >> Hi guys, >> >> I developed some new modules for BioPerl under Bio::Restriction. >> However, I used Moose to help me out writing code. >> Do you think I could submit these modules to BioPerl to be later >> integrated, hopefully, the way they are written (with Moose dependency)? >> >> Cheers >> >> -- >> ------------------------- >> Emmanuel Quevillon >> Biological Software and Databases Group >> Institut Pasteur >> +33 1 44 38 95 98 >> tuco at_ pasteur dot fr >> ------------------------- >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > -- ------------------------- Emmanuel Quevillon Biological Software and Databases Group Institut Pasteur +33 1 44 38 95 98 tuco at_ pasteur dot fr ------------------------- From scott at scottcain.net Thu Jun 17 14:55:11 2010 From: scott at scottcain.net (Scott Cain) Date: Thu, 17 Jun 2010 10:55:11 -0400 Subject: [Bioperl-l] GMOD Meeting Announcement: September 13-14 in Cambridge, England Message-ID: Hello, Thanks to the prep work by Gos Micklem at Cambridge, I am pleased to announce that there will be a two day GMOD community meeting starting on Monday Septermber 13 in Cambridge, England. This meeting occurs immediately prior to the Genome Informatics meeting in Hinxton (for which the abstract deadline is June 25). Registration information for this meeting will be available in a few weeks, though I will accept suggestions for presentations now. Please feel free to forward this to colleagues or mailing lists that you think would be interested in this meeting. I look forward to seeing you in England this Fall. Scott -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From russkieknigi at mail.ru Thu Jun 10 23:45:11 2010 From: russkieknigi at mail.ru (=?windows-1251?Q?=C0?=) Date: Fri, 11 Jun 2010 03:45:11 +0400 Subject: [Bioperl-l] =?windows-1251?q?a_possible_issue_in_synopsis_of___Bi?= =?windows-1251?b?b1BlcmwtMS42LjEgID4gIEJpbzo6UmVzdHJpY3Rpb246OkFu?= =?windows-1251?q?alysis?= Message-ID: Hi, An attempt to run synopsis code as is results in the following runtime error: Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. Replacing this: my $enzymes = $ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->unique_cutters), "\n"; with the following code: my $enzymes=$ra->unique_cutters; print "Unique cutters: ", join (', ', map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed results in an error message-free execution and the output appears reasonable Cheers, Alex From stefan.kirov at bms.com Tue Jun 15 14:39:48 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Tue, 15 Jun 2010 10:39:48 -0400 Subject: [Bioperl-l] Retrieving upstream & downstream sequences In-Reply-To: <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> References: <005e01caf5be$6d00c9c0$47025d40$@edu.hk> <000801cb0bbf$e2faafd0$a8f00f70$@edu.hk> Message-ID: <4C1790B4.1090307@bms.com> Try the ensembl API http://www.ensembl.org/info/docs/api/core/core_tutorial.html Cheers, Stefan On 6/14/2010 8:48 AM, Ross KK Leung wrote: > If I have an accession number for an mRNA/cDNA/gene (e.g. > http://www.ncbi.nlm.nih.gov/nuccore/51980295), I find sometimes if I > retrieve the genbank file and parse /dbxref then I may sometimes be able to > get some extra information but then the page is not readily usable, e.g. > > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=Retrieve&dopt=full_repo > rt&list_uids=24377 > > is there any way to automatically retrieve its upstream& downstream genomic > sequence (e.g. 500bp)? > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From stefan.kirov at bms.com Thu Jun 17 14:53:32 2010 From: stefan.kirov at bms.com (Stefan Kirov) Date: Thu, 17 Jun 2010 10:53:32 -0400 Subject: [Bioperl-l] Firefox extension project Message-ID: <4C1A36EC.9000204@bms.com> There isn't much about perl in this post, so I apologize for spamming the list, but I assumed there would be people interested in this. Please do not reply to the list, again this is not bioperl related. I have opened sourced a Firefox extension I have been developing and using for a while. The whole idea is to have a sequence analysis swiss army knife built in right in the browser. I started with incorporating some cool Javascript libraries, written by Paul Stothard (http://www.bioinformatics.org/sms2/). I have not incorporated all of those, but will if I find the time. In addition, you can decide to install emboss and clustalw (the extension comes with the source for clustal and emboss) and run them locally, which can be handy. I have started working also on SVG biograph libraries but these are quite incomplete, but I have been able to implement one graphical viewer- ORF finder, which I find quite handy. There are basic sequence parsing and fetching (NCBI) as well. Other things that work: very simple logical operations on sets, protein digest/ion generation tool. Sequence lists and projects should be functional in next release. There are 2 way to access the tools: right click and by opening the sidebar. The code behind this project is mainly Javascript, XUL, CSS and shell wrapper scripts. There is also some sqlite involved. I would be interested to hear any feedback, but would be even more excited if there are people who know these technologies (or willing to learn) and want to join in. Testers are also more than welcome. Since this is prealpha you need to be careful- I would advise anyone to have this extension installed in a non-production environment. I will upload a VirtualBox image to the SVN project in the next few days as well. Here is the project page: https://sourceforge.net/projects/biobrowserext/ Best way to contact me is kirovs at gmail Finally, developing extensions in firefox is just as much fun as programming perl (maybe more ;-) ). Cheers, Stefan Kirov -------------- next part -------------- A non-text attachment was scrubbed... Name: stefan_kirov.vcf Type: text/x-vcard Size: 207 bytes Desc: not available URL: From arthur11985 at hotmail.com Mon Jun 14 04:04:26 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Mon, 14 Jun 2010 04:04:26 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , Message-ID: Hi there I cannot access module Bio::Factory::EMBOSS; after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? my code is like following. #!/usr/bin/perl use warnings; use strict; use Bio::Factory::EMBOSS; Yours sincerely Arthur _________________________________________________________________ Looking for a place to manage all your online stuff? Download the new Windows Live http://download.live.com From julia.davison83 at googlemail.com Thu Jun 17 09:03:19 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Thu, 17 Jun 2010 02:03:19 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac Message-ID: <28912041.post@talk.nabble.com> Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From David.Messina at sbc.su.se Thu Jun 17 22:57:29 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 00:57:29 +0200 Subject: [Bioperl-l] a possible issue in synopsis of BioPerl-1.6.1 > Bio::Restriction::Analysis In-Reply-To: References: Message-ID: Hi Alex, Thanks for the report. Looks like that synopsis code no longer exists in the latest version of BioPerl. See http://github.com/bioperl/bioperl-live/blob/master/Bio/Restriction/EnzymeCollection.pm Dave On Jun 11, 2010, at 01:45 , ? wrote: > Hi, > > An attempt to run synopsis code as is results in the following runtime error: > > Can't locate object method "unique_cutters" via package "Bio::Restriction::EnzymeCollection" at testrflp.pl line 21, line 532. > > Replacing this: > my $enzymes = $ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->unique_cutters), "\n"; > > > with the following code: > my $enzymes=$ra->unique_cutters; > print "Unique cutters: ", join (', ', > map {$_->name} $enzymes->each_enzyme()), "\n"; #<<<<<<<<<<<< this line changed > > results in an error message-free execution and the output appears reasonable > > Cheers, > Alex > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From David.Messina at sbc.su.se Thu Jun 17 23:48:35 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 01:48:35 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave From florent.angly at gmail.com Fri Jun 18 02:21:31 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 12:21:31 +1000 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: References: , Message-ID: <4C1AD82B.6070005@gmail.com> Hi Arthur, The message is quite descriptive... BioPerl cannot be found on your computer. This obviously leads to the question: how did you install BioPerl? See this for details on installing BioPerl: http://www.bioperl.org/wiki/Installing_BioPerl Regards, Florent On 14/06/10 14:04, Arthur Lin wrote: > Hi there > > I cannot access module Bio::Factory::EMBOSS; > after I installed this version of BioPerl-run-1.6.1. The terminal prompted "cannot locate Bio/Factory/EMBOSS.pm". Can you please help me? > > my code is like following. > > #!/usr/bin/perl > > use warnings; > use strict; > > use Bio::Factory::EMBOSS; > > Yours sincerely > Arthur > _________________________________________________________________ > Looking for a place to manage all your online stuff? Download the new Windows Live > http://download.live.com > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From florent.angly at gmail.com Fri Jun 18 03:36:14 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 13:36:14 +1000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: References: , , <4C1AD82B.6070005@gmail.com> Message-ID: <4C1AE9AE.5030807@gmail.com> Arthur, Please when replying, use 'reply all'. Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. Thanks, Florent On 18/06/10 12:40, Arthur Lin wrote: > Hi Florent > > Thank you for your correspondence. I still have the same problem after > I followed the instruction on installing_BioPerl and installed through > cpan. > During the installation, I followed through the entire process with > default option. > Have you encountered anyone who has similar problem? > > Yours sincerely > Arthur > > > Date: Fri, 18 Jun 2010 12:21:31 +1000 > > From: florent.angly at gmail.com > > To: arthur11985 at hotmail.com > > CC: bioperl-l at bioperl.org > > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? > > > > Hi Arthur, > > > > The message is quite descriptive... BioPerl cannot be found on your > > computer. This obviously leads to the question: how did you install > BioPerl? > > See this for details on installing BioPerl: > > http://www.bioperl.org/wiki/Installing_BioPerl > > Regards, > > > > Florent > > > > > > > ------------------------------------------------------------------------ > Browse profiles for Free! Singles online now! > From cjfields at illinois.edu Fri Jun 18 03:52:20 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 17 Jun 2010 22:52:20 -0500 Subject: [Bioperl-l] =?utf-8?q?RE=2E_installing_BioPerl-run-1=2E6=2E1=2Eta?= =?utf-8?b?ci5neuKAjw==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> <4C1AE9AE.5030807@gmail.com> Message-ID: <9C7D5D52-2656-4C9D-A9E9-09B7CD0539BE@illinois.edu> Bio::Factory::EMBOSS is in BioPerl-Run (a separate package), not BioPerl. You need to install that separately. chris On Jun 17, 2010, at 10:36 PM, Florent Angly wrote: > Arthur, > Please when replying, use 'reply all'. > Describe exactly what OS you are using, what steps you performed to install BioPerl and the error messages you got. > Thanks, > Florent > > On 18/06/10 12:40, Arthur Lin wrote: >> Hi Florent >> >> Thank you for your correspondence. I still have the same problem after I followed the instruction on installing_BioPerl and installed through cpan. >> During the installation, I followed through the entire process with default option. >> Have you encountered anyone who has similar problem? >> >> Yours sincerely >> Arthur >> >> > Date: Fri, 18 Jun 2010 12:21:31 +1000 >> > From: florent.angly at gmail.com >> > To: arthur11985 at hotmail.com >> > CC: bioperl-l at bioperl.org >> > Subject: Re: [Bioperl-l] RE. installing BioPerl-run-1.6.1.tar.gz? >> > >> > Hi Arthur, >> > >> > The message is quite descriptive... BioPerl cannot be found on your >> > computer. This obviously leads to the question: how did you install BioPerl? >> > See this for details on installing BioPerl: >> > http://www.bioperl.org/wiki/Installing_BioPerl >> > Regards, >> > >> > Florent >> > >> > >> >> >> ------------------------------------------------------------------------ >> Browse profiles for Free! Singles online now! > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From anthony.goldbloom at googlemail.com Thu Jun 17 23:32:16 2010 From: anthony.goldbloom at googlemail.com (Anthony Goldbloom) Date: Fri, 18 Jun 2010 09:32:16 +1000 Subject: [Bioperl-l] What has bioinformatics ever done for us? Message-ID: <68E72261-DAED-4C7A-98E1-574AEFB00C88@gmail.com> I'm passing this around the bioinformatics community as I think it's an interesting initiative. A British bioinformatician wants to open discussion about the greatest biological discovery made possible by bioinformatics. He has just launched a "brainstorming competition" with a small cash prize to stoke discussion. Kaggle is hosting the "brainstorming competition" at: http://kaggle.com/blog/2010/06/17/%EF%BB%BFwhat-has-bioinformatics-ever-done-for-us Hopefully members of this mailing list can contribute suggestions. Anthony ps Apologies for cross posting. From premkrishnanbv at gmail.com Fri Jun 18 05:14:27 2010 From: premkrishnanbv at gmail.com (Prem) Date: Fri, 18 Jun 2010 10:44:27 +0530 Subject: [Bioperl-l] "500 Cannot connect to ----------- (Bad Host name)" Message-ID: Dear friends We urgently need somebody's help to solve a problem in Bioperl. We are actually trying to develop an online tool for sequence analysis in linux pltaform (RedHat). The first part of the program is to retrieve sequences from ncbi.nlm.nih.gov . We wrote code for that. We are using redhat linux. We can run the program successfully through terminal. It creates a fasta file of the retrieved sequences and prints the count of the sequences. Now the problem is, when we try to run it in the browser using cgi perl its not working. When we checked the error_log it says something like this, "500 Cannot connect to ----------- (Bad Host name)" We have given full file permission using chmod 777 *. File is in the directory cgi-bin. We are using Apache/2.2.3(redhat). We try to call this perl script as a submit button action (online submission form). Here we are pasting the code for your kind consideration. Kindly help us... -------------------------------------------------------------------------------------- *newtest.cgi* - sequence retrieval program -------------------------------------------------------------------------------------- #!/usr/bin/perl print "Content-Type: text/html\n\n"; use Bio::Perl; use Bio::DB::GenBank; use Bio::DB::Query::GenBank; my $db = Bio::DB::GenBank->new(); my $query = Bio::DB::Query::GenBank->new (-db => 'nucleotide', -query => "Cocos nucifera[Organism]"); my $count = $query->count; my $stream = $db->get_Stream_by_query($query); while( my $seq = $stream->next_seq ) { write_sequence(">>Cocos_nucifera.fasta",'fasta',$seq); } print $count; -------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------- *test.html* - sample html page --------------------------------------------------------------------------------------
 
Scientific name
(eg. Homo sapiens for human, Cocos nucifera for coconut etc.)
 
-------------------------------------------------------------------------------------- regards Prem krishnan B V Centre for Bioinformatics University of Kerala Kariavattom Campus Thiruvananthapuram From florent.angly at gmail.com Fri Jun 18 05:39:39 2010 From: florent.angly at gmail.com (Florent Angly) Date: Fri, 18 Jun 2010 15:39:39 +1000 Subject: [Bioperl-l] Status of assembly modules In-Reply-To: References: Message-ID: <4C1B069B.5020105@gmail.com> Hi Joshua, Yes, there have been interesting improvements in the assembly BioPerl module since v1.6.1. You can find these changes in the development version of BioPerl at http://github.com/bioperl/. I'll take this opportunity to introduce people who don't follow the commit messages to the new features that have been introduced: First, there is support for more file formats from high-throughput platforms, including those generated by de novo assembly and comparative assembly tools, such as: * Roche 454 GS Assembler, aka Newbler (the ACE-454 variant) * Maq * Sam * Bowtie There is support for running a lot more of these tools in Bioperl-run Bio::Tools::Run : * Roche 454 GS Assembler, aka Newbler * Minimo * Maq * Samtools * Bowtie In terms of writing assembly file, I added the option to write ACE files, which is quite useful because maybe assembly programs recognize this format. So now you can read assemblies, modify them as you see fit and exporting them to other programs by writing the modified assembly in an ACE file. The internals of the IO parsers have acquired some granularity as it is now possible to read/write assembly files entirely, or one contig at a time. This is terrific to reduce memory usage. That's about it... Regards, Florent PS/ Josh, you filed bug reports related to several of these issues (http://bugzilla.open-bio.org/show_bug.cgi?id=2726, http://bugzilla.open-bio.org/show_bug.cgi?id=2483). I am closing the ones that were not closed yet and thank you for submitting patches. On 18/06/10 14:00, Joshua Udall wrote: > Florent - > > I didn't want to ask a direct question on-list to perhaps avoid > confusion. Were you able to improve/submit a ContigIO to bioperl that > works with one entry at a time (instead of slurping the entire ace > file)? > > From David.Messina at sbc.su.se Fri Jun 18 09:37:31 2010 From: David.Messina at sbc.su.se (Dave Messina) Date: Fri, 18 Jun 2010 11:37:31 +0200 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Message-ID: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave From awitney at sgul.ac.uk Fri Jun 18 09:39:15 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Fri, 18 Jun 2010 10:39:15 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> On 17 Jun 2010, at 10:03, perlcurl wrote: > I have the Bioperl files downloaded, but when I try to run a simple script > (even just use Bio::Perl, which has been suggested as an easy test), I get > this message: "Can't locate Bio/Perl.pm in @INC " followed by a long > directry list. Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be located in that "long directory list" for Perl to find it. Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix HTH adam From jun.yin at ucd.ie Fri Jun 18 08:59:29 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 09:59:29 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> Message-ID: <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> Hi, Dave, Thx a million for your reply. But I have to say I am a bit confused. In the BioPerl guide, http://www.bioperl.org/wiki/Advanced_BioPerl They say that, Capital word should be used for methods returning objects, for example $aln->get_SeqFeatures; #which returns Bio::SeqFeature objects So, $aln->select() actually returns Bio::LocatableSeq objects, I think it is probably better to use $aln->select_Seqs; For the $new_aln=$aln->select_Seqs([1,3,5..10,15],"toggle"); I am thinking of assigning the first argument of the methods as coordinates or position of the sequences, and the rest of the arguments are parameters. Thus an array reference [1,3,5..10] seems better than a list (1,3,5..10), the latter will be hard to recognize the other parameters. I plan to write: Sub select_Seqs { my($self, at args)=@_; my %params; my @new_coords; if(ref($args[0] eq "ARRAY") { my $coords=shift @args; #@newcoords=_cont_coord($coords); #do something with the cords reference } else { #some warning } #do something with the other parameters if(@args) { @{$params{@args}}=undef; #do something to recognize the other parameters } #rest of the code } And of course, I can write a method as you suggest $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); Then maybe I should write all the methods in this package, which receives multiple arguments, using this way. Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Dave Messina [mailto:David.Messina at sbc.su.se] Sent: Friday, June 18, 2010 12:49 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, Great! Glad to hear you're taking on this project. > This may cause some confusion.So I propose that we should use a more > consistent way for similar functions. > > For example, the methods of > > select_Seq > > select_columns > > remove_Seq > > remove_columns > > mask_columns > > . > > should have the same interface. Agreed, absolutely. Consistency is important. I would further propose that select_Seq be select_seqs, if indeed multiple seqs are to be selected with this method. Also, capital letters are typically not used in BioPerl method names. For example, eachSeq was deprecated in favor of each_seq. > So I suggest, we can do > > $new_aln=$aln->select_Seq([1,3,5..10,15],"toggle") > > Or > > $new_aln=$aln->select_columns([2.25,34,52..60]) BioPerl tends to use named parameters passed as a hash, e.g.: my $in = Bio::SeqIO->new('-format' => 'fasta', '-file' => 'my.fasta'); So something more like: $new_aln = $aln->select_seqs('-seqs' => (1, 3, 5..10,15), -toggle => 'yes); $new_aln = $aln->select_columns('-columns' => (2, 25, 45, 52..60); Admittedly, it's redundant to say -seqs when the method is named select_seqs, and maybe less redundant labels can be chosen. Also, and this is perhaps a minor point, using () instead of [] here for the set of seqs or columns is better, since [] implies indexing into an array, which isn't what's being done. Dave __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 10:43:38 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:43:38 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28912041.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> Message-ID: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix Cheers, Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of perlcurl Sent: Thursday, June 17, 2010 10:03 AM To: Bioperl-l at lists.open-bio.org Subject: [Bioperl-l] Install problem, Mac Hi, I am quite new to perl and have been trying to use Bioperl on my Macbook Pro, OS X 10.5.8, with perl version 5.8.8. Other people have posted similar probelms, but none seem to apply to this case - have been working on it for two full days, now, and am at the end of my tether! I have the Bioperl files downloaded, but when I try to run a simple script (even just use Bio::Perl, which has been suggested as an easy test), I get this message: "Can't locate Bio/Perl.pm in @INC " followed by a long directry list. I've tried changing file location, require module in the script, use library in the script. I've downloaded the files from different sources, following instructions on Bioperl wiki and other sources. I also couldn't get fink working, as it told me there was a root /sw directory I assumed that was a problem with another program (I couldn't work out what), could this be affecting Bioperl too? When following installation for Linux (which was recommended as an alternative to mac os version) I had problems with the Build module. While I am reasonably competent using a computer, I am not especially techie, and have only been programming for a couple of weeks. Noone I know has had this problem before, and I don't know anyone else that uses Bioperl on a mac. Any help would be greatly appreciated! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28912041.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From jun.yin at ucd.ie Fri Jun 18 10:47:30 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 11:47:30 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> Message-ID: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Hi, Dave, No problem. I think your suggestion of using $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); is more reasonable. It is a more BioPerl way of defined parameters. And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); will also be recognized for the simplicity of use. Cheers, Jun Yin Ph.D. student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina Sent: Friday, June 18, 2010 10:38 AM To: Jun Yin Cc: bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Hi Jun, > In the BioPerl guide, > http://www.bioperl.org/wiki/Advanced_BioPerl > > They say that, Capital word should be used for methods returning > objects, You're absolutely right. My apologies ? thanks for pointing that out. > Thus an array reference > [1,3,5..10] seems better than a list (1,3,5..10), > the latter will be hard to recognize the other parameters. > Aaand, you're right here, too. Again, sorry about that. It was quite late last night when I was replying to your email, and I sure wasn't thinking clearly. So, please don't mind me, ( carry on, as you were!) and thanks again for your work on this. Dave _______________________________________________ Bioperl-l mailing list Bioperl-l at lists.open-bio.org http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 13:41:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 08:41:32 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jun.yin at ucd.ie Fri Jun 18 15:05:41 2010 From: jun.yin at ucd.ie (Jun Yin) Date: Fri, 18 Jun 2010 16:05:41 +0100 Subject: [Bioperl-l] Interface of the method In-Reply-To: References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> Message-ID: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Hi, Chris, Ok, I see. Then it is better to support a call of the method like: $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); and, $newaln=$aln->select_Seqs([1, 3, 5..10,15]); But '-seqs' doesnot sound very good, I will prefer '-orders'. Jun Yin Ph.D.?student in U.C.D. Bioinformatics Laboratory Conway Institute University College Dublin -----Original Message----- From: Chris Fields [mailto:cjfields at illinois.edu] Sent: Friday, June 18, 2010 2:42 PM To: Jun Yin Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org Subject: Re: [Bioperl-l] Interface of the method Jun, It all depends on optimization. I like the named argument version myself. The current bioperl named parameters implementation requires, in order to parse out the named parameters, you have to call either the core _rearrange() method or Lincoln's rearrange() utility for consistency (deals with all sorts of variants, and Lincoln's allows aliases). Either way is a small hit, which is fine in most cases, but if the method is called possibly thousands of times it amplifies accordingly and may become a bottleneck on speed. You could have your cake and eat it too; check if the first argument is an arrayref and do it it the original way, otherwise use rearrange(). BTW, this won't work: '-seqs' => (1, 3, 5..10,15), -toggle => "yes" The list flattens out into this: '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) So they don't pair up as you would expect; this is a silent bug, as rearrange() will happily assign 1 to 'seqs' and toss the rest unless they are asked for. With and odd number of elements you would see warnings popping up. You'll have to use arrayrefs to get proper name-value pairings: '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) chris On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > Hi, Dave, > > No problem. I think your suggestion of using > $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); > is more reasonable. It is a more BioPerl way of defined parameters. > > And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); > will also be recognized for the simplicity of use. > > Cheers, > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina > Sent: Friday, June 18, 2010 10:38 AM > To: Jun Yin > Cc: bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Hi Jun, > > >> In the BioPerl guide, >> http://www.bioperl.org/wiki/Advanced_BioPerl >> >> They say that, Capital word should be used for methods returning >> objects, > > You're absolutely right. My apologies ? thanks for pointing that out. > > >> Thus an array reference >> [1,3,5..10] seems better than a list (1,3,5..10), >> the latter will be hard to recognize the other parameters. > > >> > Aaand, you're right here, too. > > Again, sorry about that. It was quite late last night when I was > replying to your email, and I sure wasn't thinking clearly. > > So, please don't mind me, ( carry on, as you were!) and thanks again > for your work on this. > > > Dave > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com __________ Information from ESET Smart Security, version of virus signature database 5099 (20100509) __________ The message was checked by ESET Smart Security. http://www.eset.com From cjfields at illinois.edu Fri Jun 18 15:26:33 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 10:26:33 -0500 Subject: [Bioperl-l] Interface of the method In-Reply-To: <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> References: <006701cb0e07$51abbac0$f5033040$%yin@ucd.ie> <010701cb0ec4$8fc48130$af4d8390$%yin@ucd.ie> <4087DFC0-BB72-407B-9CE6-3F94026A110C@sbc.su.se> <010e01cb0ed3$a660c840$f32258c0$%yin@ucd.ie> <015901cb0ef7$b7b64d80$2722e880$%yin@ucd.ie> Message-ID: <5A6D64AF-0EFB-427A-899D-E7FB43ADDAA2@illinois.edu> Jun, Have to go back and see what 'toggle' does, but beyond that changing it works for me. Just to note, if this is a change directly in Bio::SimpleAlign or a modification of the Bio::Align::AlignI interface we will need to add deprecation warnings to the older methods (can't just remove them). If this a newer interface then it won't be as much of a problem, but we also can't just change Bio::AlignIO to return these instead. We can now easily do this so they go off with a predetermined minor version of Bio::Root::Root, see Bio::SimpleAlign::no_sequences/num_sequences for an example using deprecated(). (Note: At some point this deprecated may need to be modified to rely more on the module's version number, such as cases where we split off code and it will need a separate numbering scheme. But for now it works). chris On Jun 18, 2010, at 10:05 AM, Jun Yin wrote: > Hi, Chris, > > Ok, I see. Then it is better to support a call of the method like: > > $newaln=$aln->select_Seqs('-seqs' => [1, 3, 5..10,15], -toggle => "yes"); > and, > $newaln=$aln->select_Seqs([1, 3, 5..10,15]); > > But '-seqs' doesnot sound very good, I will prefer '-orders'. > > Jun Yin > Ph.D. student in U.C.D. > > Bioinformatics Laboratory > Conway Institute > University College Dublin > > > -----Original Message----- > From: Chris Fields [mailto:cjfields at illinois.edu] > Sent: Friday, June 18, 2010 2:42 PM > To: Jun Yin > Cc: 'Dave Messina'; bioperl-l at lists.open-bio.org > Subject: Re: [Bioperl-l] Interface of the method > > Jun, > > It all depends on optimization. I like the named argument version myself. > The current bioperl named parameters implementation requires, in order to > parse out the named parameters, you have to call either the core > _rearrange() method or Lincoln's rearrange() utility for consistency (deals > with all sorts of variants, and Lincoln's allows aliases). Either way is a > small hit, which is fine in most cases, but if the method is called possibly > thousands of times it amplifies accordingly and may become a bottleneck on > speed. > > You could have your cake and eat it too; check if the first argument is an > arrayref and do it it the original way, otherwise use rearrange(). > > BTW, this won't work: > > '-seqs' => (1, 3, 5..10,15), -toggle => "yes" > > The list flattens out into this: > > '-seqs', 1, 3, 5, 6, 7, 8, 9, 10, 15, -toggle, "yes" (12 elems) > > So they don't pair up as you would expect; this is a silent bug, as > rearrange() will happily assign 1 to 'seqs' and toss the rest unless they > are asked for. With and odd number of elements you would see warnings > popping up. > > You'll have to use arrayrefs to get proper name-value pairings: > > '-seqs', [ 1, 3, 5, 6, 7, 8, 9, 10, 15], -toggle, "yes" (4 elems) > > chris > > On Jun 18, 2010, at 5:47 AM, Jun Yin wrote: > >> Hi, Dave, >> >> No problem. I think your suggestion of using >> $newaln=$aln->select_Seqs('-seqs' => (1, 3, 5..10,15), -toggle => "yes"); >> is more reasonable. It is a more BioPerl way of defined parameters. >> >> And, $newaln=$aln->select_Seqs(1, 3, 5..10,15); >> will also be recognized for the simplicity of use. >> >> Cheers, >> Jun Yin >> Ph.D. student in U.C.D. >> >> Bioinformatics Laboratory >> Conway Institute >> University College Dublin >> >> >> -----Original Message----- >> From: bioperl-l-bounces at lists.open-bio.org > [mailto:bioperl-l-bounces at lists.open-bio.org] On Behalf Of Dave Messina >> Sent: Friday, June 18, 2010 10:38 AM >> To: Jun Yin >> Cc: bioperl-l at lists.open-bio.org >> Subject: Re: [Bioperl-l] Interface of the method >> >> Hi Jun, >> >> >>> In the BioPerl guide, >>> http://www.bioperl.org/wiki/Advanced_BioPerl >>> >>> They say that, Capital word should be used for methods returning >>> objects, >> >> You're absolutely right. My apologies ? thanks for pointing that out. >> >> >>> Thus an array reference >>> [1,3,5..10] seems better than a list (1,3,5..10), >>> the latter will be hard to recognize the other parameters. >> >> >>> >> Aaand, you're right here, too. >> >> Again, sorry about that. It was quite late last night when I was >> replying to your email, and I sure wasn't thinking clearly. >> >> So, please don't mind me, ( carry on, as you were!) and thanks again >> for your work on this. >> >> >> Dave >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> >> __________ Information from ESET Smart Security, version of virus > signature database 5099 (20100509) __________ >> >> The message was checked by ESET Smart Security. >> >> http://www.eset.com >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > > __________ Information from ESET Smart Security, version of virus signature > database 5099 (20100509) __________ > > The message was checked by ESET Smart Security. > > http://www.eset.com > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 18 18:03:32 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 18 Jun 2010 13:03:32 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <4C1A2741.2080604@pasteur.fr> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> Message-ID: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > On 06/17/2010 03:12 PM, Chris Fields wrote: >> Emmanuel, >> >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >> >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >> >> http://github.com/cjfields/biome >> > > Hi Chris, > > Yep I've seen it already from one of your email on the Moose list :) > I can try plug my modules to your project, however my code might be > not as evolved as yours, so it could need some improvements and > tuning to run faster and better. > >> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >> >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >> > > Well I don't really know. Let me think about it (between github and > CPAN), I'll also need to read and understand carefully your biome > project. Moreover, as already said in my previous emails, I am not > very ease with Moose right now.... > > Anyway what I can do it to change my code to better fit with actual > implementation of BioPerl 1.6 and send it to the team for later > integration? > I can also send you my Moosified version to have a look? > > Let me know > > Regards > > Emmanuel If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. Let me know. chris From scott at scottcain.net Fri Jun 18 20:55:23 2010 From: scott at scottcain.net (Scott Cain) Date: Fri, 18 Jun 2010 16:55:23 -0400 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: Hi Jay, I was going to go, but I missed the abstract deadline by exactly one month (doh!) so I'm going to skip it. Scott On Friday, June 18, 2010, Jay Hannah wrote: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) > > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? > > Jay Hannah > http://biodoc.ist.unomaha.edu/wiki/User:Jhannah > > -- ------------------------------------------------------------------------ Scott Cain, Ph. D. scott at scottcain dot net GMOD Coordinator (http://gmod.org/) 216-392-3087 Ontario Institute for Cancer Research From jay at jays.net Fri Jun 18 19:29:32 2010 From: jay at jays.net (Jay Hannah) Date: Fri, 18 Jun 2010 14:29:32 -0500 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4B7EE88D.1020406@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> Message-ID: <4C1BC91C.8070609@jays.net> On 2/19/2010 1:37 PM, Jay Hannah wrote: > http://www.bioperl.org/wiki/YAPC > > I'm looking forward to another hackathon. :) Oh dear. Am I the only attendee? Scott, George: I heard a rumor you'll be at YAPC. True? Jay Hannah http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From arthur11985 at hotmail.com Fri Jun 18 05:07:19 2010 From: arthur11985 at hotmail.com (Arthur Lin) Date: Fri, 18 Jun 2010 05:07:19 +0000 Subject: [Bioperl-l] =?windows-1256?q?RE=2E_installing_BioPerl-run-1=2E6?= =?windows-1256?b?LjEudGFyLmd6/g==?= In-Reply-To: <4C1AE9AE.5030807@gmail.com> References: , , <4C1AD82B.6070005@gmail.com> , <4C1AE9AE.5030807@gmail.com> Message-ID: Dear All I am using bio-linux, I installed BioPerl-run-1.6.1, and installed through cpan entirely. During installation, where ever a selection is required, I just followed with default setting which is just typing "enter". After that, I tried to call the module by "use Bio::Factory::EMBOSS;" with the script that I forwarded earlier and the terminal echoes "cannot locate Bio/Factory/EMBOSS.pm". Yours sincerely Arthur _________________________________________________________________ Feeling the financial pinch? Check on MSN NZ Money for a hand http://money.msn.co.nz From julia.davison83 at googlemail.com Fri Jun 18 11:22:04 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:22:04 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> Message-ID: <28924983.post@talk.nabble.com> >Where did you put the files once you downloaded them? Did you run an install? Bio/Perl.pm needs to be >located in that "long directory list" for Perl to find it. The files would initially go to my user directory or my downloads (I can't remember which install version did which). When this didn't work I tried moving them to my perl folder, and to applications. There was an install text file. I could try using the directory list in require module? >Also you could try just using the standard Unix methods (CPAN or Build.pl) of install, see here for details: Have tried both. :-( It *seemed* to be Build that had the most trouble... Thanks! -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28924983.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From julia.davison83 at googlemail.com Fri Jun 18 11:25:35 2010 From: julia.davison83 at googlemail.com (perlcurl) Date: Fri, 18 Jun 2010 04:25:35 -0700 (PDT) Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> References: <28912041.post@talk.nabble.com> <010d01cb0ed3$1c7662c0$55632840$%yin@ucd.ie> Message-ID: <28925011.post@talk.nabble.com> sorry - is this in the expat library section of cpan? I've been through all those install methods, and nothing seems to change the problem. thanks. Hi, You may consider to include the directory of BioPerl in your PERL5PATH. Or you can read this article: http://www.bioperl.org/wiki/Installing_Bioperl_for_Unix -- View this message in context: http://old.nabble.com/Install-problem%2C-Mac-tp28912041p28925011.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From rikusia at gmail.com Fri Jun 18 18:05:02 2010 From: rikusia at gmail.com (Rikusia) Date: Fri, 18 Jun 2010 11:05:02 -0700 (PDT) Subject: [Bioperl-l] Finding homologous (fasta files) via blast Message-ID: <28929168.post@talk.nabble.com> Hi everybody. I guess you won't be able to help me, but lets give it a try. I have to write a code for university assignment. I have to find homologous of given sequence with bioperl via blast. I'm not very good at coding and i really appreciate your help. Maybe you can give me few hints? Or you have code already? I'd be thankfull you forever. -- View this message in context: http://old.nabble.com/Finding-homologous-%28fasta-files%29-via-blast-tp28929168p28929168.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From hartzell at alerce.com Sat Jun 19 03:53:55 2010 From: hartzell at alerce.com (George Hartzell) Date: Fri, 18 Jun 2010 20:53:55 -0700 Subject: [Bioperl-l] YAPC::NA 2010 perl conference In-Reply-To: <4C1BC91C.8070609@jays.net> References: <4B7ECA35.6080609@cornell.edu> <4B7EE88D.1020406@jays.net> <4C1BC91C.8070609@jays.net> Message-ID: <19484.16211.139152.780741@gargle.gargle.HOWL> Jay Hannah writes: > On 2/19/2010 1:37 PM, Jay Hannah wrote: > > http://www.bioperl.org/wiki/YAPC > > > > I'm looking forward to another hackathon. :) > > Oh dear. Am I the only attendee? > > Scott, George: I heard a rumor you'll be at YAPC. True? I'll be there. Arriving Sunday PM. g. From rikusia at gmail.com Sat Jun 19 09:20:58 2010 From: rikusia at gmail.com (Rikusia) Date: Sat, 19 Jun 2010 02:20:58 -0700 (PDT) Subject: [Bioperl-l] NetBlast path. Not found. Message-ID: <28933539.post@talk.nabble.com> I have code like this: #!/usr/bin/perl -w use strict; use warnings; use Bio::SearchIO; my $netblast_dir = $ENV{USERPROFILE} . "\\Desktop\\netblast"; my $blast_report; chdir ($netblast_dir) or die; system ("blastcl3 -p blastn -d nr -i in.fasta -o out.blast"); $blast_report = new Bio::SearchIO ('-format' => 'blast', '-file' => 'out.blast'); while ( my $result = $blast_report->next_result ) { my $hit_num = 0; while( my $hit = $result->next_hit ) { $hit_num++; while( my $hsp = $hit->next_hsp ) { my $hsp_num++; my $hitName = $hit->name; my $percent_id = sprintf ("%.2f", $hsp->percent_identity); my $hspLength = $hsp->hsp_length; my $hspStart = $hsp->start('hit'); my $hspEnd = $hsp->end('hit'); my $numID = $hsp->num_identical; my $numGaps = $hsp->gaps; print "Hit number: $hit_num, hsp number: $hsp_num\n\t$hitName\n" . "\t\tPercent ID: $percent_id\n" . "\t\tLength: $hspLength\n" . "\t\tRange: $hspStart - $hspEnd\n" . "\t\tIdentical residues: $numID\n" . "\t\tGaps: $numGaps\n\n"; } } } print "Done.\n"; I'm using netblast, but still Path to blastall cannot be found and changing windows enviroment variables is not helping. Do you have any ideas how to fix it? -- View this message in context: http://old.nabble.com/NetBlast-path.-Not-found.-tp28933539p28933539.html Sent from the Perl - Bioperl-L mailing list archive at Nabble.com. From awitney at sgul.ac.uk Sat Jun 19 13:38:12 2010 From: awitney at sgul.ac.uk (Adam Witney) Date: Sat, 19 Jun 2010 14:38:12 +0100 Subject: [Bioperl-l] Install problem, Mac In-Reply-To: <28924983.post@talk.nabble.com> References: <28912041.post@talk.nabble.com> <7E8C3ECE-2A38-4D50-AD10-75F148DA7959@sgul.ac.uk> <28924983.post@talk.nabble.com> Message-ID: <3B84D6D2-44C7-4917-9A2B-C2407FDB8C72@sgul.ac.uk> On 18 Jun 2010, at 12:22, perlcurl wrote: > > > >> Where did you put the files once you downloaded them? Did you run an > install? Bio/Perl.pm needs to be >located in that "long directory list" for > Perl to find it. > > The files would initially go to my user directory or my downloads (I can't > remember which install version did which). When this didn't work I tried > moving them to my perl folder, and to applications. > There was an install text file. > I could try using the directory list in require module? > > >> Also you could try just using the standard Unix methods (CPAN or Build.pl) > of install, see here for details: > Have tried both. :-( It *seemed* to be Build that had the most trouble... ah so you haven't managed to build Bioperl successfully yet? can you give more details of what you have tried and what exactly failed adam From jay at jays.net Mon Jun 21 14:28:22 2010 From: jay at jays.net (Jay Hannah) Date: Mon, 21 Jun 2010 10:28:22 -0400 Subject: [Bioperl-l] bioperl.org is down? Message-ID: s$ telnet bioperl.org 80 Trying 208.94.50.58... telnet: Unable to connect to remote host: Connection refused From s.denaxas at gmail.com Tue Jun 22 07:00:31 2010 From: s.denaxas at gmail.com (Spiros Denaxas) Date: Tue, 22 Jun 2010 08:00:31 +0100 Subject: [Bioperl-l] bioperl.org is down? In-Reply-To: References: Message-ID: Hm, works fine for me here. fruit:$ telnet bioperl.org 80 Trying 208.94.50.58... Connected to bioperl.org. Escape character is '^]'. GET / [...] On Mon, Jun 21, 2010 at 3:28 PM, Jay Hannah wrote: > s$ telnet bioperl.org 80 > Trying 208.94.50.58... > telnet: Unable to connect to remote host: Connection refused > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From vecchi.b at gmail.com Wed Jun 23 12:04:48 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 09:04:48 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: Hi, BioPerl is using Array::Compare which, as of?2009-08-09, depends on Moose. This means that Moose has been a dependency (albeit indirect) for almost a year now. Just thought I should point that out! Cheers, Bruno. 2010/6/18 Chris Fields > > On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: > > > On 06/17/2010 03:12 PM, Chris Fields wrote: > >> Emmanuel, > >> > >> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. ?But you have two possible options: > >> > >> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: > >> > >> http://github.com/cjfields/biome > >> > > > > Hi Chris, > > > > Yep I've seen it already from one of your email on the Moose list :) > > I can try plug my modules to your project, however my code might be > > not as evolved as yours, so it could need some improvements and > > tuning to run faster and better. > > > >> This will eventually move into the bioperl github account, and is probably a better fit. ?Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). > >> > >> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. ?That frees you up to do whatever you want with the code. > >> > > > > Well I don't really know. Let me think about it (between github and > > CPAN), I'll also need to read and understand carefully your biome > > project. Moreover, as already said in my previous emails, I am not > > very ease with Moose right now.... > > > > Anyway what I can do it to change my code to better fit with actual > > implementation of BioPerl 1.6 and send it to the team for later > > integration? > > I can also send you my Moosified version to have a look? > > > > Let me know > > > > Regards > > > > Emmanuel > > If the code works, wouldn't be much work to get it into Biome. ?Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. ?Tests and such are pretty straightforward. ?If needed you can wrap BioPerl objects. > > Let me know. > > chris > > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 23 14:16:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 23 Jun 2010 09:16:26 -0500 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> Message-ID: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Bruno, Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). Our dependency load is already too high as it is. I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). Stevan Little himself posted on this last year: http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. Moose may be part of the answer, and could act as a viable transition to perl 6. I have already initiated that effort with biome, which anyone is more than welcome to participate in. Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). chris On Jun 23, 2010, at 7:04 AM, Bruno Vecchi wrote: > Hi, > > BioPerl is using Array::Compare which, as of 2009-08-09, depends on > Moose. This means that Moose has been a dependency (albeit indirect) > for almost a year now. Just thought I should point that out! > > Cheers, > > Bruno. > > 2010/6/18 Chris Fields >> >> On Jun 17, 2010, at 8:46 AM, Emmanuel Quevillon wrote: >> >>> On 06/17/2010 03:12 PM, Chris Fields wrote: >>>> Emmanuel, >>>> >>>> I don't think we could do this for direct inclusion within BioPerl core, due to the heavy load of dependencies Moose carries on top of the ones we already have. But you have two possible options: >>>> >>>> 1) I have started a separate project on github that is a full Moose-based BioPerl, which may evolve into a BioPerl 2.0 at some point: >>>> >>>> http://github.com/cjfields/biome >>>> >>> >>> Hi Chris, >>> >>> Yep I've seen it already from one of your email on the Moose list :) >>> I can try plug my modules to your project, however my code might be >>> not as evolved as yours, so it could need some improvements and >>> tuning to run faster and better. >>> >>>> This will eventually move into the bioperl github account, and is probably a better fit. Not sure what version of Perl you are using, though (we just changed the required version to 5.12, but that could be dropped to 5.10). >>>> >>>> 2) Release it on CPAN on it's own, listing BioPerl as a dependency. That frees you up to do whatever you want with the code. >>>> >>> >>> Well I don't really know. Let me think about it (between github and >>> CPAN), I'll also need to read and understand carefully your biome >>> project. Moreover, as already said in my previous emails, I am not >>> very ease with Moose right now.... >>> >>> Anyway what I can do it to change my code to better fit with actual >>> implementation of BioPerl 1.6 and send it to the team for later >>> integration? >>> I can also send you my Moosified version to have a look? >>> >>> Let me know >>> >>> Regards >>> >>> Emmanuel >> >> If the code works, wouldn't be much work to get it into Biome. Essentially you would change 'use Moose' to 'use Biome' and 'use Moose::Role' to 'use Biome::Role'. Tests and such are pretty straightforward. If needed you can wrap BioPerl objects. >> >> Let me know. >> >> chris >> >> >> >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l From vecchi.b at gmail.com Wed Jun 23 14:48:43 2010 From: vecchi.b at gmail.com (Bruno Vecchi) Date: Wed, 23 Jun 2010 11:48:43 -0300 Subject: [Bioperl-l] Bio module using Moose In-Reply-To: <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> References: <4C1A0BBE.3060304@pasteur.fr> <4C1A2741.2080604@pasteur.fr> <87D43A13-A5A6-42F5-9247-D891C621A054@illinois.edu> <2AE73B9E-4FF8-4877-BB64-E669AB183CDC@illinois.edu> Message-ID: Chris, > Array::Compare is not required, it's a recommended module, meaning it isn't automatically installed, and isn't necessary for the full build. ?Acc. to Build.PL it's used in one very specific case, the Bio::PhyloNetworks modules. Good catch, hadn't considered it could be a soft dependency. I stand corrected, sorry about the confusion. :) > I am a supporter of Moose completely, but IMHO we should move away from Array::Compare for core (which is completely non-Moose). ?Our dependency load is already too high as it is. ?I believe it has been pointed out elsewhere that using Moose for Array::Compare is a bit overkill and has introduced a new host of dependencies to dists like ours w/o anyone's knowledge, along with possible start-up performance issues (still being addressed with Moose). ?Stevan Little himself posted on this last year: > > http://stevan-little.blogspot.com/2009/09/re-moose-or-no-moose.html > > Rob Buels and I also discussed this a bit back in January re: Moose and BioPerl, and I think we both came to the conclusion Moose-based tools should go into a separate codebase or be a Bioperl 2.0, primarily b/c the current class structure makes it very difficult to truly use Moose to its fullest abilities (set base class, introspection, etc). ?That's not necessarily a bad thing; we need to take a hard look at our current toolset and establish the strong and weak points and address them, and possibly deal with other issues along the way. ?Moose may be part of the answer, and could act as a viable transition to perl 6. ?I have already initiated that effort with biome, which anyone is more than welcome to participate in. Oh, I agree completely. I wasn't making any judgement call in my previous message; just thought I should point that Moose was already a dependency that had slipped in, probably without people noticing since Array::Compare didn't originally depend on Moose. > Now, that doesn't preclude anyone from making a CPAN release of their own that both requires Moose and Bioperl. ?I'm in full support of that, and I do wish more people would take advantage of CPAN instead of asking the core devs to drop their code into core (which implies the burden of maintenance is mainly upon the core devs, a completely unsustainable task). Also agree; in fact, I thought about this myself a year or so ago when I wrote Bio::Protease. I initially considered proposing it for inclusion here, but ended up releasing it as a standalone module to the CPAN. Partly because it was factored out of a project that had Moose all over it, but also because there really weren't any compelling reasons to have it bundled with BioPerl: it doesn't depend on it, and it would have added more unwanted bloat to BioPerl. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. In summary, I too think that keeping Moose out of BioPerl is the sanest choice, and that modularity should be achieved both by "untangling the monolith" but also by encouraging releasing modules as independent entities whenever it's possible to do so. Cheers, Bruno. From abhishek.vit at gmail.com Thu Jun 24 14:20:22 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 10:20:22 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function Message-ID: Hi All I may be hitting a problem which probably hints at my grip of the language. I am trying to store Bio::SeqIO object in a hash. I have creates couple of Bio::SeqIO objects in a method and storing them as a hash reference. The goal is to use them in another subroutine for writing out data to each file. The script is trying to bin data into different files. Any idea how I could achieve creating file handles thru "Bio::SeqIO" object in one routine and pass them to another for writing. Thanks! -Abhi foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $indexes->{$lane}->{$bin}->{'file_handle'}=$out; } } From wkretzsch at gmail.com Thu Jun 24 15:24:34 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 11:24:34 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi, My understanding is that you are using a SeqIO object in order to create correctly parsed output files. In that case for each SeqIO object, open it like this: for (0..9){ $file = "my_file_$_"; push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); } simply make $file correspond to the file (or bin) you want to put your data into. then pass @outseqIOs to your other subroutine and once you've created a seq object, write it to the bin you want it to go to (in this case file number "7"): $outseqIOs[7]->write_seq($seq); I haven't tested the code, but that's the kind of thing I think you're looking for. For more info, look at the howto: http://www.bioperl.org/wiki/HOWTO:SeqIO Warren On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap wrote: > Hi All > > I may be hitting a problem which probably hints at my grip of the language. > I am trying to store Bio::SeqIO object in a hash. I have creates couple of > Bio::SeqIO objects in a method and storing them as a hash reference. The > goal is to use them in another subroutine for writing out data to each file. > The script is trying to bin data into different files. > > > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" object > in one routine and pass them to another for writing. > > > Thanks! > -Abhi > > foreach my $bin (keys %{ $indexes->{$lane} }) > ?{ > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > ?my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > ?} > } > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From abhishek.vit at gmail.com Thu Jun 24 16:19:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:19:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Warren Thanks for your quick reply. I am doing something very close to what you have suggested but I see errors which might be due to some silly mistake I am making. The difference is instead of array I am using a hash to help me extract file names by key value later. I am writing data like this. my $file_handle = $bins{$bin_name}; $file_handle->write_seq($data); Gives me an error Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. -Abhi On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar wrote: > Hi, > My understanding is that you are using a SeqIO object in order to > create correctly parsed output files. > > In that case for each SeqIO object, open it like this: > > for (0..9){ > $file = "my_file_$_"; > push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format ); > } > > simply make $file correspond to the file (or bin) you want to put your > data into. > > then pass @outseqIOs to your other subroutine and once you've created > a seq object, write it to the bin you want it to go to (in this case > file number "7"): > > $outseqIOs[7]->write_seq($seq); > > I haven't tested the code, but that's the kind of thing I think you're > looking for. For more info, look at the howto: > http://www.bioperl.org/wiki/HOWTO:SeqIO > > Warren > > On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > wrote: > > Hi All > > > > I may be hitting a problem which probably hints at my grip of the > language. > > I am trying to store Bio::SeqIO object in a hash. I have creates couple > of > > Bio::SeqIO objects in a method and storing them as a hash reference. The > > goal is to use them in another subroutine for writing out data to each > file. > > The script is trying to bin data into different files. > > > > > > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > object > > in one routine and pass them to another for writing. > > > > > > Thanks! > > -Abhi > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > } > > } > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > From wkretzsch at gmail.com Thu Jun 24 16:22:32 2010 From: wkretzsch at gmail.com (Warren W. Kretzschmar) Date: Thu, 24 Jun 2010 12:22:32 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Where are you getting the filehandles from? That is, How are you opening them? Can you show me the code? Warren On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap wrote: > Dear Warren > Thanks for your quick reply. ?I am doing something very close to what you > have suggested but I see errors which might be due to some silly mistake I > am making. The difference is instead of array I am using a hash to help me > extract file names by key value later. > I am writing data like this. > my $file_handle = $bins{$bin_name}; > ?$file_handle->write_seq($data); > Gives me an error > Can't call method "write_seq" on an undefined value at > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > 139, line 5. > -Abhi > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > wrote: >> >> Hi, >> My understanding is that you are using a SeqIO object in order to >> create correctly parsed output files. >> >> In that case for each SeqIO object, open it like this: >> >> for (0..9){ >> $file = "my_file_$_"; >> push @outseqIOs, Bio::SeqIO->new(-file ? => ">$file", -format => $format >> ); >> } >> >> simply make $file correspond to the file (or bin) you want to put your >> data into. >> >> then pass @outseqIOs to your other subroutine and once you've created >> a seq object, write it to the bin you want it to go to (in this case >> file number "7"): >> >> $outseqIOs[7]->write_seq($seq); >> >> I haven't tested the code, but that's the kind of thing I think you're >> looking for. For more info, look at the howto: >> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >> Warren >> >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> wrote: >> > Hi All >> > >> > I may be hitting a problem which probably hints at my grip of the >> > language. >> > I am trying to store Bio::SeqIO object in a hash. I have creates couple >> > of >> > Bio::SeqIO objects in a method and storing them as a hash reference. The >> > goal is to use them in another subroutine for writing out data to each >> > file. >> > The script is trying to bin data into different files. >> > >> > >> > Any idea how I could achieve creating file handles ?thru "Bio::SeqIO" >> > object >> > in one routine and pass them to another for writing. >> > >> > >> > Thanks! >> > -Abhi >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > ?{ >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > ?my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > ? ? ? ?my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> > ?} >> > } >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> > > > From abhishek.vit at gmail.com Thu Jun 24 16:26:02 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:26:02 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Sure. Here is the full subroutine where I am opening the file handle and storing them Thanks for your help, -A sub createBins { my $SUB ='createBins'; my $PWD = `pwd`; my $outpath = shift @_; my $lane = shift @_ ; foreach my $bin (keys %{ $indexes->{$lane} }) { my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; my $path="$outpath".'/'."$sample_name"; mkpath( $path, { verbose => 1, mode => 0711 }); my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => ">$outpath/$sample_name/$fastQFile"); $bins{$bin}=$out; } } On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar wrote: > Where are you getting the filehandles from? That is, How are you > opening them? Can you show me the code? > > Warren > > On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > wrote: > > Dear Warren > > Thanks for your quick reply. I am doing something very close to what you > > have suggested but I see errors which might be due to some silly mistake > I > > am making. The difference is instead of array I am using a hash to help > me > > extract file names by key value later. > > I am writing data like this. > > my $file_handle = $bins{$bin_name}; > > $file_handle->write_seq($data); > > Gives me an error > > Can't call method "write_seq" on an undefined value at > > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line > > 139, line 5. > > -Abhi > > On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > wrote: > >> > >> Hi, > >> My understanding is that you are using a SeqIO object in order to > >> create correctly parsed output files. > >> > >> In that case for each SeqIO object, open it like this: > >> > >> for (0..9){ > >> $file = "my_file_$_"; > >> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format > >> ); > >> } > >> > >> simply make $file correspond to the file (or bin) you want to put your > >> data into. > >> > >> then pass @outseqIOs to your other subroutine and once you've created > >> a seq object, write it to the bin you want it to go to (in this case > >> file number "7"): > >> > >> $outseqIOs[7]->write_seq($seq); > >> > >> I haven't tested the code, but that's the kind of thing I think you're > >> looking for. For more info, look at the howto: > >> http://www.bioperl.org/wiki/HOWTO:SeqIO > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >> wrote: > >> > Hi All > >> > > >> > I may be hitting a problem which probably hints at my grip of the > >> > language. > >> > I am trying to store Bio::SeqIO object in a hash. I have creates > couple > >> > of > >> > Bio::SeqIO objects in a method and storing them as a hash reference. > The > >> > goal is to use them in another subroutine for writing out data to each > >> > file. > >> > The script is trying to bin data into different files. > >> > > >> > > >> > Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >> > object > >> > in one routine and pass them to another for writing. > >> > > >> > > >> > Thanks! > >> > -Abhi > >> > > >> > foreach my $bin (keys %{ $indexes->{$lane} }) > >> > { > >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >> > my $path="$outpath".'/'."$sample_name"; > >> > mkpath( $path, { verbose => 1, mode => 0711 }); > >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >> > ">$outpath/$sample_name/$fastQFile"); > >> > $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >> > } > >> > } > >> > _______________________________________________ > >> > Bioperl-l mailing list > >> > Bioperl-l at lists.open-bio.org > >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l > >> > > > > > > From cjfields at illinois.edu Thu Jun 24 16:52:48 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 11:52:48 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Are you sure you haven't hit the max limit for open filehandles for your OS? Attempting to open a filehandle when you exceed this limit simply returns undef, which might explain the error. On my Mac: cjfields4:~ cjfields$ ulimit -n 256 On my ubuntu box: cjfields at pyrimidine:~$ ulimit -n 1024 I think Windows used to be much less, not sure now. You might not be able to reset this on some systems. chris On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > Sure. Here is the full subroutine where I am opening the file handle and > storing them > > Thanks for your help, > -A > > sub createBins { > my $SUB ='createBins'; > my $PWD = `pwd`; > my $outpath = shift @_; > my $lane = shift @_ ; > > foreach my $bin (keys %{ $indexes->{$lane} }) > { > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > my $path="$outpath".'/'."$sample_name"; > mkpath( $path, { verbose => 1, mode => 0711 }); > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > ">$outpath/$sample_name/$fastQFile"); > $bins{$bin}=$out; > } > } > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar > wrote: > >> Where are you getting the filehandles from? That is, How are you >> opening them? Can you show me the code? >> >> Warren >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> wrote: >>> Dear Warren >>> Thanks for your quick reply. I am doing something very close to what you >>> have suggested but I see errors which might be due to some silly mistake >> I >>> am making. The difference is instead of array I am using a hash to help >> me >>> extract file names by key value later. >>> I am writing data like this. >>> my $file_handle = $bins{$bin_name}; >>> $file_handle->write_seq($data); >>> Gives me an error >>> Can't call method "write_seq" on an undefined value at >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line >>> 139, line 5. >>> -Abhi >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>> wrote: >>>> >>>> Hi, >>>> My understanding is that you are using a SeqIO object in order to >>>> create correctly parsed output files. >>>> >>>> In that case for each SeqIO object, open it like this: >>>> >>>> for (0..9){ >>>> $file = "my_file_$_"; >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => $format >>>> ); >>>> } >>>> >>>> simply make $file correspond to the file (or bin) you want to put your >>>> data into. >>>> >>>> then pass @outseqIOs to your other subroutine and once you've created >>>> a seq object, write it to the bin you want it to go to (in this case >>>> file number "7"): >>>> >>>> $outseqIOs[7]->write_seq($seq); >>>> >>>> I haven't tested the code, but that's the kind of thing I think you're >>>> looking for. For more info, look at the howto: >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>> >>>> Warren >>>> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>> wrote: >>>>> Hi All >>>>> >>>>> I may be hitting a problem which probably hints at my grip of the >>>>> language. >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> couple >>>>> of >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> The >>>>> goal is to use them in another subroutine for writing out data to each >>>>> file. >>>>> The script is trying to bin data into different files. >>>>> >>>>> >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" >>>>> object >>>>> in one routine and pass them to another for writing. >>>>> >>>>> >>>>> Thanks! >>>>> -Abhi >>>>> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>> { >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>> my $path="$outpath".'/'."$sample_name"; >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>> ">$outpath/$sample_name/$fastQFile"); >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>> } >>>>> } >>>>> _______________________________________________ >>>>> Bioperl-l mailing list >>>>> Bioperl-l at lists.open-bio.org >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>> >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 16:55:58 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 12:55:58 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Hi Chris Thanks for joining this conversation. I dont think max limit of file handles is a problem. I am opening about 12 in this case. [apratap at grima]$ ulimit -n 4096 -A On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > Are you sure you haven't hit the max limit for open filehandles for your > OS? Attempting to open a filehandle when you exceed this limit simply > returns undef, which might explain the error. On my Mac: > > cjfields4:~ cjfields$ ulimit -n > 256 > > On my ubuntu box: > > cjfields at pyrimidine:~$ ulimit -n > 1024 > > I think Windows used to be much less, not sure now. You might not be able > to reset this on some systems. > > chris > > On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > > Sure. Here is the full subroutine where I am opening the file handle and > > storing them > > > > Thanks for your help, > > -A > > > > sub createBins { > > my $SUB ='createBins'; > > my $PWD = `pwd`; > > my $outpath = shift @_; > > my $lane = shift @_ ; > > > > foreach my $bin (keys %{ $indexes->{$lane} }) > > { > > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > my $path="$outpath".'/'."$sample_name"; > > mkpath( $path, { verbose => 1, mode => 0711 }); > > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > ">$outpath/$sample_name/$fastQFile"); > > $bins{$bin}=$out; > > } > > } > > > > > > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > wkretzsch at gmail.com > >> wrote: > > > >> Where are you getting the filehandles from? That is, How are you > >> opening them? Can you show me the code? > >> > >> Warren > >> > >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >> wrote: > >>> Dear Warren > >>> Thanks for your quick reply. I am doing something very close to what > you > >>> have suggested but I see errors which might be due to some silly > mistake > >> I > >>> am making. The difference is instead of array I am using a hash to help > >> me > >>> extract file names by key value later. > >>> I am writing data like this. > >>> my $file_handle = $bins{$bin_name}; > >>> $file_handle->write_seq($data); > >>> Gives me an error > >>> Can't call method "write_seq" on an undefined value at > >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line > >>> 139, line 5. > >>> -Abhi > >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>> wrote: > >>>> > >>>> Hi, > >>>> My understanding is that you are using a SeqIO object in order to > >>>> create correctly parsed output files. > >>>> > >>>> In that case for each SeqIO object, open it like this: > >>>> > >>>> for (0..9){ > >>>> $file = "my_file_$_"; > >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > $format > >>>> ); > >>>> } > >>>> > >>>> simply make $file correspond to the file (or bin) you want to put your > >>>> data into. > >>>> > >>>> then pass @outseqIOs to your other subroutine and once you've created > >>>> a seq object, write it to the bin you want it to go to (in this case > >>>> file number "7"): > >>>> > >>>> $outseqIOs[7]->write_seq($seq); > >>>> > >>>> I haven't tested the code, but that's the kind of thing I think you're > >>>> looking for. For more info, look at the howto: > >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>> > >>>> Warren > >>>> > >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>> wrote: > >>>>> Hi All > >>>>> > >>>>> I may be hitting a problem which probably hints at my grip of the > >>>>> language. > >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >> couple > >>>>> of > >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >> The > >>>>> goal is to use them in another subroutine for writing out data to > each > >>>>> file. > >>>>> The script is trying to bin data into different files. > >>>>> > >>>>> > >>>>> Any idea how I could achieve creating file handles thru "Bio::SeqIO" > >>>>> object > >>>>> in one routine and pass them to another for writing. > >>>>> > >>>>> > >>>>> Thanks! > >>>>> -Abhi > >>>>> > >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>> { > >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>> my $path="$outpath".'/'."$sample_name"; > >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>> } > >>>>> } > >>>>> _______________________________________________ > >>>>> Bioperl-l mailing list > >>>>> Bioperl-l at lists.open-bio.org > >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>> > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 17:03:00 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 13:03:00 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: After a bit more error checking, I was able to resolve the previous error Resolved Error : Can't call method "write_seq" on an undefined value at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl line 139, line 5. This happened due to null value returned by one of the hash. However I am hitting a new issue. New Error : Can't call method "isa" on unblessed reference at /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, line 49 -A On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > Hi Chris > > Thanks for joining this conversation. I dont think max limit of file > handles is a problem. I am opening about 12 in this case. > > [apratap at grima]$ ulimit -n > 4096 > > -A > > > On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> Are you sure you haven't hit the max limit for open filehandles for your >> OS? Attempting to open a filehandle when you exceed this limit simply >> returns undef, which might explain the error. On my Mac: >> >> cjfields4:~ cjfields$ ulimit -n >> 256 >> >> On my ubuntu box: >> >> cjfields at pyrimidine:~$ ulimit -n >> 1024 >> >> I think Windows used to be much less, not sure now. You might not be able >> to reset this on some systems. >> >> chris >> >> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >> >> > Sure. Here is the full subroutine where I am opening the file handle and >> > storing them >> > >> > Thanks for your help, >> > -A >> > >> > sub createBins { >> > my $SUB ='createBins'; >> > my $PWD = `pwd`; >> > my $outpath = shift @_; >> > my $lane = shift @_ ; >> > >> > foreach my $bin (keys %{ $indexes->{$lane} }) >> > { >> > my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> > my $path="$outpath".'/'."$sample_name"; >> > mkpath( $path, { verbose => 1, mode => 0711 }); >> > my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> > ">$outpath/$sample_name/$fastQFile"); >> > $bins{$bin}=$out; >> > } >> > } >> > >> > >> > On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >> wkretzsch at gmail.com >> >> wrote: >> > >> >> Where are you getting the filehandles from? That is, How are you >> >> opening them? Can you show me the code? >> >> >> >> Warren >> >> >> >> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >> >> wrote: >> >>> Dear Warren >> >>> Thanks for your quick reply. I am doing something very close to what >> you >> >>> have suggested but I see errors which might be due to some silly >> mistake >> >> I >> >>> am making. The difference is instead of array I am using a hash to >> help >> >> me >> >>> extract file names by key value later. >> >>> I am writing data like this. >> >>> my $file_handle = $bins{$bin_name}; >> >>> $file_handle->write_seq($data); >> >>> Gives me an error >> >>> Can't call method "write_seq" on an undefined value at >> >>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >> line >> >>> 139, line 5. >> >>> -Abhi >> >>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >> >>> wrote: >> >>>> >> >>>> Hi, >> >>>> My understanding is that you are using a SeqIO object in order to >> >>>> create correctly parsed output files. >> >>>> >> >>>> In that case for each SeqIO object, open it like this: >> >>>> >> >>>> for (0..9){ >> >>>> $file = "my_file_$_"; >> >>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >> $format >> >>>> ); >> >>>> } >> >>>> >> >>>> simply make $file correspond to the file (or bin) you want to put >> your >> >>>> data into. >> >>>> >> >>>> then pass @outseqIOs to your other subroutine and once you've created >> >>>> a seq object, write it to the bin you want it to go to (in this case >> >>>> file number "7"): >> >>>> >> >>>> $outseqIOs[7]->write_seq($seq); >> >>>> >> >>>> I haven't tested the code, but that's the kind of thing I think >> you're >> >>>> looking for. For more info, look at the howto: >> >>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >> >>>> >> >>>> Warren >> >>>> >> >>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >> >>>> wrote: >> >>>>> Hi All >> >>>>> >> >>>>> I may be hitting a problem which probably hints at my grip of the >> >>>>> language. >> >>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >> >> couple >> >>>>> of >> >>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >> >> The >> >>>>> goal is to use them in another subroutine for writing out data to >> each >> >>>>> file. >> >>>>> The script is trying to bin data into different files. >> >>>>> >> >>>>> >> >>>>> Any idea how I could achieve creating file handles thru >> "Bio::SeqIO" >> >>>>> object >> >>>>> in one routine and pass them to another for writing. >> >>>>> >> >>>>> >> >>>>> Thanks! >> >>>>> -Abhi >> >>>>> >> >>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >> >>>>> { >> >>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >> >>>>> my $path="$outpath".'/'."$sample_name"; >> >>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >> >>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >> >>>>> ">$outpath/$sample_name/$fastQFile"); >> >>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >> >>>>> } >> >>>>> } >> >>>>> _______________________________________________ >> >>>>> Bioperl-l mailing list >> >>>>> Bioperl-l at lists.open-bio.org >> >>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >>>>> >> >>> >> >>> >> >> >> > _______________________________________________ >> > Bioperl-l mailing list >> > Bioperl-l at lists.open-bio.org >> > http://lists.open-bio.org/mailman/listinfo/bioperl-l >> >> > From jay at jays.net Thu Jun 24 17:10:21 2010 From: jay at jays.net (Jay Hannah) Date: Thu, 24 Jun 2010 13:10:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: On Jun 24, 2010, at 1:03 PM, Abhishek Pratap wrote: > However I am hitting a new issue. You might also seek help via IRC: http://bioperl.org/wiki/IRC (I have to get on a plane in 20 minutes, so the channel might be quiet.) I, for one, don't attempt support via email due to chronic 20-40 minute posting delays. Jay Hannah email defamation league http://biodoc.ist.unomaha.edu/wiki/User:Jhannah From cjfields at illinois.edu Thu Jun 24 17:19:21 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 12:19:21 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. chris On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > After a bit more error checking, I was able to resolve the previous error > > Resolved Error : Can't call method "write_seq" on an undefined value > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > line 139, line 5. > This happened due to null value returned by one of the hash. > > However I am hitting a new issue. > New Error : Can't call method "isa" on unblessed reference at > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > line 49 > > > -A > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > >> Hi Chris >> >> Thanks for joining this conversation. I dont think max limit of file >> handles is a problem. I am opening about 12 in this case. >> >> [apratap at grima]$ ulimit -n >> 4096 >> >> -A >> >> >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: >> >>> Are you sure you haven't hit the max limit for open filehandles for your >>> OS? Attempting to open a filehandle when you exceed this limit simply >>> returns undef, which might explain the error. On my Mac: >>> >>> cjfields4:~ cjfields$ ulimit -n >>> 256 >>> >>> On my ubuntu box: >>> >>> cjfields at pyrimidine:~$ ulimit -n >>> 1024 >>> >>> I think Windows used to be much less, not sure now. You might not be able >>> to reset this on some systems. >>> >>> chris >>> >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: >>> >>>> Sure. Here is the full subroutine where I am opening the file handle and >>>> storing them >>>> >>>> Thanks for your help, >>>> -A >>>> >>>> sub createBins { >>>> my $SUB ='createBins'; >>>> my $PWD = `pwd`; >>>> my $outpath = shift @_; >>>> my $lane = shift @_ ; >>>> >>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>> { >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>> my $path="$outpath".'/'."$sample_name"; >>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>> ">$outpath/$sample_name/$fastQFile"); >>>> $bins{$bin}=$out; >>>> } >>>> } >>>> >>>> >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < >>> wkretzsch at gmail.com >>>>> wrote: >>>> >>>>> Where are you getting the filehandles from? That is, How are you >>>>> opening them? Can you show me the code? >>>>> >>>>> Warren >>>>> >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap >>>>> wrote: >>>>>> Dear Warren >>>>>> Thanks for your quick reply. I am doing something very close to what >>> you >>>>>> have suggested but I see errors which might be due to some silly >>> mistake >>>>> I >>>>>> am making. The difference is instead of array I am using a hash to >>> help >>>>> me >>>>>> extract file names by key value later. >>>>>> I am writing data like this. >>>>>> my $file_handle = $bins{$bin_name}; >>>>>> $file_handle->write_seq($data); >>>>>> Gives me an error >>>>>> Can't call method "write_seq" on an undefined value at >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl >>> line >>>>>> 139, line 5. >>>>>> -Abhi >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar >>>>>> wrote: >>>>>>> >>>>>>> Hi, >>>>>>> My understanding is that you are using a SeqIO object in order to >>>>>>> create correctly parsed output files. >>>>>>> >>>>>>> In that case for each SeqIO object, open it like this: >>>>>>> >>>>>>> for (0..9){ >>>>>>> $file = "my_file_$_"; >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => >>> $format >>>>>>> ); >>>>>>> } >>>>>>> >>>>>>> simply make $file correspond to the file (or bin) you want to put >>> your >>>>>>> data into. >>>>>>> >>>>>>> then pass @outseqIOs to your other subroutine and once you've created >>>>>>> a seq object, write it to the bin you want it to go to (in this case >>>>>>> file number "7"): >>>>>>> >>>>>>> $outseqIOs[7]->write_seq($seq); >>>>>>> >>>>>>> I haven't tested the code, but that's the kind of thing I think >>> you're >>>>>>> looking for. For more info, look at the howto: >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO >>>>>>> >>>>>>> Warren >>>>>>> >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap >>>>>>> wrote: >>>>>>>> Hi All >>>>>>>> >>>>>>>> I may be hitting a problem which probably hints at my grip of the >>>>>>>> language. >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates >>>>> couple >>>>>>>> of >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. >>>>> The >>>>>>>> goal is to use them in another subroutine for writing out data to >>> each >>>>>>>> file. >>>>>>>> The script is trying to bin data into different files. >>>>>>>> >>>>>>>> >>>>>>>> Any idea how I could achieve creating file handles thru >>> "Bio::SeqIO" >>>>>>>> object >>>>>>>> in one routine and pass them to another for writing. >>>>>>>> >>>>>>>> >>>>>>>> Thanks! >>>>>>>> -Abhi >>>>>>>> >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) >>>>>>>> { >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; >>>>>>>> my $path="$outpath".'/'."$sample_name"; >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => >>>>>>>> ">$outpath/$sample_name/$fastQFile"); >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; >>>>>>>> } >>>>>>>> } >>>>>>>> _______________________________________________ >>>>>>>> Bioperl-l mailing list >>>>>>>> Bioperl-l at lists.open-bio.org >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>>>>>>> >>>>>> >>>>>> >>>>> >>>> _______________________________________________ >>>> Bioperl-l mailing list >>>> Bioperl-l at lists.open-bio.org >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l >>> >>> >> > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From abhishek.vit at gmail.com Thu Jun 24 18:09:20 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:09:20 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: Dear Chris I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. Thanks! -Abhi On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line > 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for > your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be > able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to > what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From cjfields at illinois.edu Thu Jun 24 18:14:41 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:14:41 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: Message-ID: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> The best way to get that is by using next_seq(), not next_dataset. It will not be as fast, but should suffice. At the moment we don't have plans on supporting output for hash refs frm next_dataset until we can standardize upon a way for describing such data from various parsers. chris On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > Dear Chris > > I am indeed passing hash ref via next_dataset. Any slick way to convert the ref to Bio::Seq::Quality format. > > Thanks! > -Abhi > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields wrote: > The error message is pretty straightforward. What are you passing into write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() only supports Bio::Seq::Quality. > > chris > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > After a bit more error checking, I was able to resolve the previous error > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > line 139, line 5. > > This happened due to null value returned by one of the hash. > > > > However I am hitting a new issue. > > New Error : Can't call method "isa" on unblessed reference at > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pm line 126, > > line 49 > > > > > > -A > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap wrote: > > > >> Hi Chris > >> > >> Thanks for joining this conversation. I dont think max limit of file > >> handles is a problem. I am opening about 12 in this case. > >> > >> [apratap at grima]$ ulimit -n > >> 4096 > >> > >> -A > >> > >> > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields wrote: > >> > >>> Are you sure you haven't hit the max limit for open filehandles for your > >>> OS? Attempting to open a filehandle when you exceed this limit simply > >>> returns undef, which might explain the error. On my Mac: > >>> > >>> cjfields4:~ cjfields$ ulimit -n > >>> 256 > >>> > >>> On my ubuntu box: > >>> > >>> cjfields at pyrimidine:~$ ulimit -n > >>> 1024 > >>> > >>> I think Windows used to be much less, not sure now. You might not be able > >>> to reset this on some systems. > >>> > >>> chris > >>> > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > >>> > >>>> Sure. Here is the full subroutine where I am opening the file handle and > >>>> storing them > >>>> > >>>> Thanks for your help, > >>>> -A > >>>> > >>>> sub createBins { > >>>> my $SUB ='createBins'; > >>>> my $PWD = `pwd`; > >>>> my $outpath = shift @_; > >>>> my $lane = shift @_ ; > >>>> > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>> { > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>> my $path="$outpath".'/'."$sample_name"; > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>> ">$outpath/$sample_name/$fastQFile"); > >>>> $bins{$bin}=$out; > >>>> } > >>>> } > >>>> > >>>> > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > >>> wkretzsch at gmail.com > >>>>> wrote: > >>>> > >>>>> Where are you getting the filehandles from? That is, How are you > >>>>> opening them? Can you show me the code? > >>>>> > >>>>> Warren > >>>>> > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > >>>>> wrote: > >>>>>> Dear Warren > >>>>>> Thanks for your quick reply. I am doing something very close to what > >>> you > >>>>>> have suggested but I see errors which might be due to some silly > >>> mistake > >>>>> I > >>>>>> am making. The difference is instead of array I am using a hash to > >>> help > >>>>> me > >>>>>> extract file names by key value later. > >>>>>> I am writing data like this. > >>>>>> my $file_handle = $bins{$bin_name}; > >>>>>> $file_handle->write_seq($data); > >>>>>> Gives me an error > >>>>>> Can't call method "write_seq" on an undefined value at > >>>>>> /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > >>> line > >>>>>> 139, line 5. > >>>>>> -Abhi > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > >>>>>> wrote: > >>>>>>> > >>>>>>> Hi, > >>>>>>> My understanding is that you are using a SeqIO object in order to > >>>>>>> create correctly parsed output files. > >>>>>>> > >>>>>>> In that case for each SeqIO object, open it like this: > >>>>>>> > >>>>>>> for (0..9){ > >>>>>>> $file = "my_file_$_"; > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > >>> $format > >>>>>>> ); > >>>>>>> } > >>>>>>> > >>>>>>> simply make $file correspond to the file (or bin) you want to put > >>> your > >>>>>>> data into. > >>>>>>> > >>>>>>> then pass @outseqIOs to your other subroutine and once you've created > >>>>>>> a seq object, write it to the bin you want it to go to (in this case > >>>>>>> file number "7"): > >>>>>>> > >>>>>>> $outseqIOs[7]->write_seq($seq); > >>>>>>> > >>>>>>> I haven't tested the code, but that's the kind of thing I think > >>> you're > >>>>>>> looking for. For more info, look at the howto: > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > >>>>>>> > >>>>>>> Warren > >>>>>>> > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > >>>>>>> wrote: > >>>>>>>> Hi All > >>>>>>>> > >>>>>>>> I may be hitting a problem which probably hints at my grip of the > >>>>>>>> language. > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > >>>>> couple > >>>>>>>> of > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash reference. > >>>>> The > >>>>>>>> goal is to use them in another subroutine for writing out data to > >>> each > >>>>>>>> file. > >>>>>>>> The script is trying to bin data into different files. > >>>>>>>> > >>>>>>>> > >>>>>>>> Any idea how I could achieve creating file handles thru > >>> "Bio::SeqIO" > >>>>>>>> object > >>>>>>>> in one routine and pass them to another for writing. > >>>>>>>> > >>>>>>>> > >>>>>>>> Thanks! > >>>>>>>> -Abhi > >>>>>>>> > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > >>>>>>>> { > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > >>>>>>>> } > >>>>>>>> } > >>>>>>>> _______________________________________________ > >>>>>>>> Bioperl-l mailing list > >>>>>>>> Bioperl-l at lists.open-bio.org > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>>>>>>> > >>>>>> > >>>>>> > >>>>> > >>>> _______________________________________________ > >>>> Bioperl-l mailing list > >>>> Bioperl-l at lists.open-bio.org > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > >>> > >>> > >> > > _______________________________________________ > > Bioperl-l mailing list > > Bioperl-l at lists.open-bio.org > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > From abhishek.vit at gmail.com Thu Jun 24 18:28:21 2010 From: abhishek.vit at gmail.com (Abhishek Pratap) Date: Thu, 24 Jun 2010 14:28:21 -0400 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: Thanks everyone for your input. I have the script working. Chris : Not sure what is the rationale, write_seq and next_seq has different key names in the hash ref( eg . 'display_id' and '-id') . This could possibly cause conflicts in future development. Also just wondering why currently only Bio:SeqIO:Quality object works with write_seq. -Abhi On Thu, Jun 24, 2010 at 2:14 PM, Chris Fields wrote: > The best way to get that is by using next_seq(), not next_dataset. It will > not be as fast, but should suffice. > > At the moment we don't have plans on supporting output for hash refs frm > next_dataset until we can standardize upon a way for describing such data > from various parsers. > > chris > > On Jun 24, 2010, at 1:09 PM, Abhishek Pratap wrote: > > > Dear Chris > > > > I am indeed passing hash ref via next_dataset. Any slick way to convert > the ref to Bio::Seq::Quality format. > > > > Thanks! > > -Abhi > > > > On Thu, Jun 24, 2010 at 1:19 PM, Chris Fields > wrote: > > The error message is pretty straightforward. What are you passing into > write_seq? Is it a simple hash-ref (maybe via next_dataset)? write_seq() > only supports Bio::Seq::Quality. > > > > chris > > > > On Jun 24, 2010, at 12:03 PM, Abhishek Pratap wrote: > > > > > After a bit more error checking, I was able to resolve the previous > error > > > > > > Resolved Error : Can't call method "write_seq" on an undefined value > > > at /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > > line 139, line 5. > > > This happened due to null value returned by one of the hash. > > > > > > However I am hitting a new issue. > > > New Error : Can't call method "isa" on unblessed reference at > > > /local/projects/grc/devel/packages/bioperl-live/Bio/SeqIO/fastq.pmline 126, > > > line 49 > > > > > > > > > -A > > > > > > > > > > > > On Thu, Jun 24, 2010 at 12:55 PM, Abhishek Pratap < > abhishek.vit at gmail.com>wrote: > > > > > >> Hi Chris > > >> > > >> Thanks for joining this conversation. I dont think max limit of file > > >> handles is a problem. I am opening about 12 in this case. > > >> > > >> [apratap at grima]$ ulimit -n > > >> 4096 > > >> > > >> -A > > >> > > >> > > >> On Thu, Jun 24, 2010 at 12:52 PM, Chris Fields >wrote: > > >> > > >>> Are you sure you haven't hit the max limit for open filehandles for > your > > >>> OS? Attempting to open a filehandle when you exceed this limit > simply > > >>> returns undef, which might explain the error. On my Mac: > > >>> > > >>> cjfields4:~ cjfields$ ulimit -n > > >>> 256 > > >>> > > >>> On my ubuntu box: > > >>> > > >>> cjfields at pyrimidine:~$ ulimit -n > > >>> 1024 > > >>> > > >>> I think Windows used to be much less, not sure now. You might not be > able > > >>> to reset this on some systems. > > >>> > > >>> chris > > >>> > > >>> On Jun 24, 2010, at 11:26 AM, Abhishek Pratap wrote: > > >>> > > >>>> Sure. Here is the full subroutine where I am opening the file handle > and > > >>>> storing them > > >>>> > > >>>> Thanks for your help, > > >>>> -A > > >>>> > > >>>> sub createBins { > > >>>> my $SUB ='createBins'; > > >>>> my $PWD = `pwd`; > > >>>> my $outpath = shift @_; > > >>>> my $lane = shift @_ ; > > >>>> > > >>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>> { > > >>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>> my $path="$outpath".'/'."$sample_name"; > > >>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file => > > >>>> ">$outpath/$sample_name/$fastQFile"); > > >>>> $bins{$bin}=$out; > > >>>> } > > >>>> } > > >>>> > > >>>> > > >>>> On Thu, Jun 24, 2010 at 12:22 PM, Warren W. Kretzschmar < > > >>> wkretzsch at gmail.com > > >>>>> wrote: > > >>>> > > >>>>> Where are you getting the filehandles from? That is, How are you > > >>>>> opening them? Can you show me the code? > > >>>>> > > >>>>> Warren > > >>>>> > > >>>>> On Thu, Jun 24, 2010 at 12:19 PM, Abhishek Pratap > > >>>>> wrote: > > >>>>>> Dear Warren > > >>>>>> Thanks for your quick reply. I am doing something very close to > what > > >>> you > > >>>>>> have suggested but I see errors which might be due to some silly > > >>> mistake > > >>>>> I > > >>>>>> am making. The difference is instead of array I am using a hash to > > >>> help > > >>>>> me > > >>>>>> extract file names by key value later. > > >>>>>> I am writing data like this. > > >>>>>> my $file_handle = $bins{$bin_name}; > > >>>>>> $file_handle->write_seq($data); > > >>>>>> Gives me an error > > >>>>>> Can't call method "write_seq" on an undefined value at > > >>>>>> > /home/apratap/dev/eclipse_workspace/Illumina/demultiplex_GA_data.pl > > >>> line > > >>>>>> 139, line 5. > > >>>>>> -Abhi > > >>>>>> On Thu, Jun 24, 2010 at 11:24 AM, Warren W. Kretzschmar > > >>>>>> wrote: > > >>>>>>> > > >>>>>>> Hi, > > >>>>>>> My understanding is that you are using a SeqIO object in order to > > >>>>>>> create correctly parsed output files. > > >>>>>>> > > >>>>>>> In that case for each SeqIO object, open it like this: > > >>>>>>> > > >>>>>>> for (0..9){ > > >>>>>>> $file = "my_file_$_"; > > >>>>>>> push @outseqIOs, Bio::SeqIO->new(-file => ">$file", -format => > > >>> $format > > >>>>>>> ); > > >>>>>>> } > > >>>>>>> > > >>>>>>> simply make $file correspond to the file (or bin) you want to put > > >>> your > > >>>>>>> data into. > > >>>>>>> > > >>>>>>> then pass @outseqIOs to your other subroutine and once you've > created > > >>>>>>> a seq object, write it to the bin you want it to go to (in this > case > > >>>>>>> file number "7"): > > >>>>>>> > > >>>>>>> $outseqIOs[7]->write_seq($seq); > > >>>>>>> > > >>>>>>> I haven't tested the code, but that's the kind of thing I think > > >>> you're > > >>>>>>> looking for. For more info, look at the howto: > > >>>>>>> http://www.bioperl.org/wiki/HOWTO:SeqIO > > >>>>>>> > > >>>>>>> Warren > > >>>>>>> > > >>>>>>> On Thu, Jun 24, 2010 at 10:20 AM, Abhishek Pratap > > >>>>>>> wrote: > > >>>>>>>> Hi All > > >>>>>>>> > > >>>>>>>> I may be hitting a problem which probably hints at my grip of > the > > >>>>>>>> language. > > >>>>>>>> I am trying to store Bio::SeqIO object in a hash. I have creates > > >>>>> couple > > >>>>>>>> of > > >>>>>>>> Bio::SeqIO objects in a method and storing them as a hash > reference. > > >>>>> The > > >>>>>>>> goal is to use them in another subroutine for writing out data > to > > >>> each > > >>>>>>>> file. > > >>>>>>>> The script is trying to bin data into different files. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Any idea how I could achieve creating file handles thru > > >>> "Bio::SeqIO" > > >>>>>>>> object > > >>>>>>>> in one routine and pass them to another for writing. > > >>>>>>>> > > >>>>>>>> > > >>>>>>>> Thanks! > > >>>>>>>> -Abhi > > >>>>>>>> > > >>>>>>>> foreach my $bin (keys %{ $indexes->{$lane} }) > > >>>>>>>> { > > >>>>>>>> my $sample_name = $indexes->{$lane}->{$bin}->{'sample'}; > > >>>>>>>> my $path="$outpath".'/'."$sample_name"; > > >>>>>>>> mkpath( $path, { verbose => 1, mode => 0711 }); > > >>>>>>>> my $out = Bio::SeqIO->new(-format=>'fastq-illumina', -file > => > > >>>>>>>> ">$outpath/$sample_name/$fastQFile"); > > >>>>>>>> $indexes->{$lane}->{$bin}->{'file_handle'}=$out; > > >>>>>>>> } > > >>>>>>>> } > > >>>>>>>> _______________________________________________ > > >>>>>>>> Bioperl-l mailing list > > >>>>>>>> Bioperl-l at lists.open-bio.org > > >>>>>>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>>>>>>> > > >>>>>> > > >>>>>> > > >>>>> > > >>>> _______________________________________________ > > >>>> Bioperl-l mailing list > > >>>> Bioperl-l at lists.open-bio.org > > >>>> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > >>> > > >>> > > >> > > > _______________________________________________ > > > Bioperl-l mailing list > > > Bioperl-l at lists.open-bio.org > > > http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > > > > From cjfields at illinois.edu Thu Jun 24 18:47:26 2010 From: cjfields at illinois.edu (Chris Fields) Date: Thu, 24 Jun 2010 13:47:26 -0500 Subject: [Bioperl-l] Passing/Storing "Bio::SeqIO" object to a function In-Reply-To: References: <157F3D0F-B9B8-47FF-8162-AC966E4C3D28@illinois.edu> Message-ID: <678DF936-84D0-4305-B240-84B73264A25A@illinois.edu> On Jun 24, 2010, at 1:28 PM, Abhishek Pratap wrote: > Thanks everyone for your input. I have the script working. > > Chris : Not sure what is the rationale, write_seq and next_seq has different > key names in the hash ref( eg . 'display_id' and '-id') . This could > possibly cause conflicts in future development. The '-id' constructor argument (which is terribly non-specific) defaults to setting the display_id, as this is the most commonly used one. Frankly, if it were up to me I would either die/warn with the -id parameter ('Error: Use a more specific ID type; defaulting to display_id') and defer as is, but that breaks API at the moment. This behavior is also the default in the older FASTQ parser as well as others (FASTA I believe), so it is retained for consistency. > Also just wondering why > currently only Bio:SeqIO:Quality object works with write_seq. For FASTQ format, that would be the only one that would make sense (why output something with no quality information). Unless I'm missing something, that's a feature, not a bug. > -Abhi chris From cjfields at illinois.edu Fri Jun 25 16:44:31 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 11:44:31 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray Message-ID: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> All, We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. chris From cjfields at illinois.edu Fri Jun 25 18:38:24 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 13:38:24 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> An update to this: I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. chris On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > All, > > We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. > > I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 19:39:36 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 14:39:36 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> <707F70BE-C195-4F43-857A-DF89FFCBC05A@illinois.edu> Message-ID: <10B48011-6C9E-419A-A3FE-18A7B688A264@illinois.edu> Marian's code has been moved into the github Bio-Microarray repo (we can rename that if needed). Bio::Expression modules have been moved into bioperl-microarray for the time being, though I would like to allow use of that namespace for others if needed. Bio::Expression and Bio::Microarray have been removed on a branch of bioperl-live, all tests pass, so it just needs merging. chris On Jun 25, 2010, at 1:38 PM, Chris Fields wrote: > An update to this: > > I have attempted to run simple tests on bioperl-micrarray and found that they fail on the requirement of a non-existent core module (Bio::Expression::FeatureSet) that is also required of several of the Bio::Expression core modules. Seeing as (1) there has been no active development on these in many years, (2) no tests are present for any of these modules outside of bioperl-microarray, and (3) the modules are largely central to bioperl-microarray, I suggest we move Bio::Expression modules out of core to bioperl-microarray and deprecate the whole lot completely. > > If there aren't any complaints I'll do this along with the other changes mentioned, and add Bio::Expression to DEPRECATED immediately. Based on this I also suggest Marian's modules go into a separate distribution completely. > > chris > > On Jun 25, 2010, at 11:44 AM, Chris Fields wrote: > >> All, >> >> We have had the Bio::Microarray code in bioperl-live for a while now, but it hasn't been released as part of bioperl core in the 1.6 series mainly b/c the code has been under active development. Seeing as a paper has been recently published for the code, though (which indicates to me it's in a finished state), and seeing as we have been talking for a while about splitting out specific focused code into separate distributions, I vote we move the various Bio::Microarray modules either into their own separate distribution or into the bioperl-microarray distribution. I also suggest Marian undertake primary or secondary maintainer status of that code for official CPAN releases. Marian, let me know if you need help along those lines. >> >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. >> >> If no one has complaints, I'll work on moving the code out over the next week, likely into bioperl-microarray. >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Fri Jun 25 20:31:04 2010 From: cjfields at illinois.edu (Chris Fields) Date: Fri, 25 Jun 2010 15:31:04 -0500 Subject: [Bioperl-l] version() vs seq_version() Message-ID: Looking at bug 3095: http://bugzilla.open-bio.org/show_bug.cgi?id=3095 As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? chris From hlapp at drycafe.net Sun Jun 27 00:32:46 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:32:46 -0700 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > I also suggest we eventually do the same for the PhyloNetwork > modules down the line, and that we steer users who want to submit > new publication-focused bioperl-reliant code into their own CPAN > distributions. That makes sense. -hilmar -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From hlapp at drycafe.net Sun Jun 27 00:36:17 2010 From: hlapp at drycafe.net (Hilmar Lapp) Date: Sat, 26 Jun 2010 17:36:17 -0700 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: References: Message-ID: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Versioning of a sequence database entry and of the sequence itself need not be the same thing. Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. -hilmar On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > Looking at bug 3095: > > http://bugzilla.open-bio.org/show_bug.cgi?id=3095 > > As indicated there seems to be some redundancy between > Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several > formats (asciitree, genbank, embl, bsml, etc) all call > seq_version(), whereas others use version() if at all. My guess is > the SV line from EMBL, but shouldn't using version() handle this? > > Just as an experiment, I actually got seq_version to delegate to > version() and all tests passed, so maybe this should just delegate > or alias? > > chris > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l -- =========================================================== : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : =========================================================== From cjfields at illinois.edu Sun Jun 27 01:26:10 2010 From: cjfields at illinois.edu (Chris Fields) Date: Sat, 26 Jun 2010 20:26:10 -0500 Subject: [Bioperl-l] version() vs seq_version() In-Reply-To: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> References: <6C11D59C-69E0-422C-BAC9-D1A35ED982F6@drycafe.net> Message-ID: <0F532CB7-9195-4226-B76C-3BC8767BA546@illinois.edu> I think, as long as this is clarified for the sake of documentation that would suffice. I'm hazarding a guess that Bio::Seq::version() would be the seq-specific one, whereas Bio::Seq::RichSeq::seq_version() is the seq record (e.g. database entry specific) one. chris On Jun 26, 2010, at 7:36 PM, Hilmar Lapp wrote: > Versioning of a sequence database entry and of the sequence itself need not be the same thing. > > Though I guess one can argue that in practice incrementing the version of a sequence would invariably also increment the version of the database entry. However, I'm not sure the reverse can necessarily be taken for granted. > > -hilmar > > On Jun 25, 2010, at 1:31 PM, Chris Fields wrote: > >> Looking at bug 3095: >> >> http://bugzilla.open-bio.org/show_bug.cgi?id=3095 >> >> As indicated there seems to be some redundancy between Bio::Seq::version() and Bio::Seq::RichSeq::seq_version(). Several formats (asciitree, genbank, embl, bsml, etc) all call seq_version(), whereas others use version() if at all. My guess is the SV line from EMBL, but shouldn't using version() handle this? >> >> Just as an experiment, I actually got seq_version to delegate to version() and all tests passed, so maybe this should just delegate or alias? >> >> chris >> _______________________________________________ >> Bioperl-l mailing list >> Bioperl-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/bioperl-l > > -- > =========================================================== > : Hilmar Lapp -:- Durham, NC -:- hlapp at drycafe dot net : > =========================================================== > > > > From buiduyminh at gmail.com Mon Jun 28 13:15:14 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Mon, 28 Jun 2010 09:15:14 -0400 Subject: [Bioperl-l] BLAT Howto? Message-ID: Hi everyone, I am new to Bioperl and perl itself and running perl on window 7. My job is to develop an application that can search through a database with thousands of queries. BLAT is a best option (if you know any other algorithm that can do this, please let me know). I have been searching through Bioperl BLAT documentation and there is only one document for BLAT but without example. I am wondering if anyone has done BLAT using Bioperl, please show me how to use BLAT in Bioperl. Thank you very much and sorry for my english. Its not my first language. From JSahl at som.umaryland.edu Mon Jun 28 14:04:06 2010 From: JSahl at som.umaryland.edu (Sahl, Jason) Date: Mon, 28 Jun 2010 10:04:06 -0400 Subject: [Bioperl-l] maf write Message-ID: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Hi. I'm trying to write out an alignment in the maf format and I get this error: ------------- EXCEPTION: Bio::Root::NotImplemented ------------- MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by package Bio::AlignIO::maf. This is not your fault - author of Bio::AlignIO::maf should be blamed! I'm using Perl 5.8.8. Anyone know if there are plans to implement write_aln for maf files in the near future? Or does anyone have an easy work around? thank you, Jason Sahl From jovel_juan at hotmail.com Mon Jun 28 17:19:23 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Mon, 28 Jun 2010 17:19:23 +0000 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hello Everybody! I generally use SearchIO to parse my blast reports. To extract hit name, I do: ... while (my $hsp = $hit->next_hsp){ ... my $hit_name = $hit -> name(); ... } It usually gives me something like: ref|NC_006884.1| How can I get ALL the information contained in the name line of that hit?, for example: >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome THANKS IN ADVANCE! JUAN _________________________________________________________________ Connect to the next generation of MSN Messenger? http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline From cjfields at illinois.edu Mon Jun 28 17:28:38 2010 From: cjfields at illinois.edu (Chris Fields) Date: Mon, 28 Jun 2010 12:28:38 -0500 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: <62E8D186-9EA5-4C08-AFBF-8316F5C1A78A@illinois.edu> $hit->description, I believe. chris On Jun 28, 2010, at 12:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, for example: > >> gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From shalabh.sharma7 at gmail.com Mon Jun 28 17:42:41 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Mon, 28 Jun 2010 13:42:41 -0400 Subject: [Bioperl-l] Getting whole gene info with SeachIO In-Reply-To: References: <214B3B97-7B37-4963-9190-6C90D2C5BD8C@som.umaryland.edu> Message-ID: Hey Juan, You need to use $hit->description; -Shalabh On Mon, Jun 28, 2010 at 1:19 PM, Juan Jovel wrote: > > Hello Everybody! > > I generally use SearchIO to parse my blast reports. To extract hit name, I > do: > > ... > > while (my $hsp = $hit->next_hsp){ > ... > my $hit_name = $hit -> name(); > ... > } > > It usually gives me something like: > > ref|NC_006884.1| > > How can I get ALL the information contained in the name line of that hit?, > for example: > > >gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome > > THANKS IN ADVANCE! > > JUAN > > _________________________________________________________________ > Connect to the next generation of MSN Messenger > > http://imagine-msn.com/messenger/launch80/default.aspx?locale=en-us&source=wlmailtagline > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From buiduyminh at gmail.com Tue Jun 29 13:58:09 2010 From: buiduyminh at gmail.com (Minh Bui) Date: Tue, 29 Jun 2010 09:58:09 -0400 Subject: [Bioperl-l] Error when Using BLAT???? Message-ID: Hi everyone, I am writing an application that allows me to search through a database (yeast.nt*) *with a few queries (yeastquery.fasta). Here is the code: *use warnings;* *use Bio::Tools::Run::Alignment::Blat;* *use Bio::SeqIO;* *use Bio::DB::Fasta;* * * *my $seqio_object = Bio::SeqIO -> new (-file => 'C:/Users/MINH/Desktop/yeastquery.fasta', -format => 'fasta'); * * * *my $database = 'C:/Users/MINH/Desktop/yeast.nt';* *my $db = Bio::DB::Fasta->new($database); * * * *my $factory = Bio::Tools::Run::Alignment::Blat->new(); * * * *while (my $blat_object = $seqio_object -> next_seq) {** * * my $results = $factory -> run($blat_object,$db); * *}* BUT i got this error and don't know how to fix it. I am sorry, i am new to Perl and Bioperl. I am using window 7, Strawberry. *Replacement list is longer than search list at C:/strawberry/perl/site/lib/Bio/Range.pm line 251.* *Use of uninitialized value in concatenation (.) or string at C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm line 251, line 1.* *'-out' is not recognized as an internal or external command,* *operable program or batch file.* * * *------------- EXCEPTION: Bio::Root::Exception -------------* *MSG: Blat call ( -out=psl C:\Users\MINH\AppData\Local\Temp\BUiXTGzYC2 C:\Users\MINH\AppData\Local\Temp\yQK5pzgJ_z) crashed: 256 * * * *STACK: Error::throw* *STACK: Bio::Root::Root::throw C:/strawberry/perl/site/lib/Bio/Root/Root.pm:368* *STACK: Bio::Tools::Run::Alignment::Blat::_run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:261* *STACK: Bio::Tools::Run::Alignment::Blat::run C:/strawberry/perl/site/lib/Bio/Tools/Run/Alignment/Blat.pm:178* *STACK: D:/eclipswp/bioperl/readfasta.pl:15* *-----------------------------------------------------------* Thank you for your help. From david.breimann at gmail.com Tue Jun 29 14:01:49 2010 From: david.breimann at gmail.com (David Breimann) Date: Tue, 29 Jun 2010 07:01:49 -0700 (PDT) Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome Message-ID: Hello, I have calculated some numeric score for each nucleotide in some genbank file.I would like to plot these scores against the genome. I'm quite new to bio perl so I have done some reading and experimenting with Bio::Graphics and followed the examples in the docs. However, I am not sure how can I easily plot this graph. Should I create a feature separately for each nucleotide? This does not seem to make snse. I thought Bio::Graphics::Glyph::xyplot might be relevant but coul not fully understand how to apply the example given to my setting. Thanks, David From biopython at maubp.freeserve.co.uk Tue Jun 29 14:51:55 2010 From: biopython at maubp.freeserve.co.uk (Peter) Date: Tue, 29 Jun 2010 15:51:55 +0100 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: On Tue, Jun 29, 2010 at 3:01 PM, David Breimann wrote: > Hello, > > I have calculated some numeric score for each nucleotide in some > genbank file.I would like to plot these scores against the genome. > As a quick solution you could use Artemis. Load the GenBank file, then menu Graph, Add User Plot, and pick a plot file. There are several supported formats but the simplest is one score per line (one line per nucleotide). You can use several scores per line (i.e. several scores per nucleotide) and then you get several different color lines on the plot. See: http://www.sanger.ac.uk/resources/software/artemis/ Peter From cjfields at illinois.edu Tue Jun 29 15:18:52 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 10:18:52 -0500 Subject: [Bioperl-l] Plotting per-nucleotide-score vs. genome In-Reply-To: References: Message-ID: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> This is also possible via Bio::Graphics I believe, using some of the xyplot glyphs. Genome-wide information is probably better described using a compressed format like wig/bigwig (which BioPerl can also read via Lincoln's Bio::BigFile). chris On Jun 29, 2010, at 9:51 AM, Peter wrote: > On Tue, Jun 29, 2010 at 3:01 PM, David Breimann > wrote: >> Hello, >> >> I have calculated some numeric score for each nucleotide in some >> genbank file.I would like to plot these scores against the genome. >> > > As a quick solution you could use Artemis. Load the GenBank file, > then menu Graph, Add User Plot, and pick a plot file. There are > several supported formats but the simplest is one score per line > (one line per nucleotide). You can use several scores per line (i.e. > several scores per nucleotide) and then you get several different > color lines on the plot. See: > > http://www.sanger.ac.uk/resources/software/artemis/ > > Peter > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From jovel_juan at hotmail.com Tue Jun 29 18:18:33 2010 From: jovel_juan at hotmail.com (Juan Jovel) Date: Tue, 29 Jun 2010 18:18:33 +0000 Subject: [Bioperl-l] Parsing by organism In-Reply-To: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> References: , , <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hello Everybody! When using SearchIO to parse BLAST reports, is it possible to extract only hits belonging to an specific organism? If yes, how? Thanks in advance, JUAN _________________________________________________________________ Invite your mail contacts to join your friends list with Windows Live Spaces. It's easy! http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us From shalabh.sharma7 at gmail.com Tue Jun 29 19:08:40 2010 From: shalabh.sharma7 at gmail.com (shalabh sharma) Date: Tue, 29 Jun 2010 15:08:40 -0400 Subject: [Bioperl-l] Parsing by organism In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: Hey Juan, When you parse your blast file and to get description you use $hit->description. That field contains information about the organism (in the square brackets , [....]), there you can have a condition for a particular organism. -Shalabh On Tue, Jun 29, 2010 at 2:18 PM, Juan Jovel wrote: > > Hello Everybody! > > When using SearchIO to parse BLAST reports, is it possible to extract only > hits belonging to an specific organism? If yes, how? > > Thanks in advance, > > JUAN > > _________________________________________________________________ > Invite your mail contacts to join your friends list with Windows Live > Spaces. It's easy! > > http://spaces.live.com/spacesapi.aspx?wx_action=create&wx_url=/friends.aspx&mkt=en-us > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l > From Russell.Smithies at agresearch.co.nz Tue Jun 29 21:06:33 2010 From: Russell.Smithies at agresearch.co.nz (Smithies, Russell) Date: Wed, 30 Jun 2010 09:06:33 +1200 Subject: [Bioperl-l] SearchIO hit->description mod? In-Reply-To: References: <6A5D0784-9A23-4ECD-85A4-FA4382C070FB@illinois.edu> Message-ID: <18DF7D20DFEC044098A1062202F5FFF32E731078A1@exchsth.agresearch.co.nz> Not sure if it's a useful tweak, but is it worth changing $hit->description to return an array? Just mentioned it as I notice when I'm parsing search results from Blasts against the NR database, the fasta header line consists of multiple values separated by a CTRL-A. $hit->accession will give you the accession of the first element in the header but $hit->description will give you the descriptions of all the rest of the elements. Probably not explaining it very well but perhaps both $hit->description and $hit->accession should return arrays or maybe use wantarray and return either a scalar or array? I don't know my way around the code well enough but it probably belongs further up the tree - Bio::Search::Hit? or even up in Bio::Seq? My hack for just getting back the first description, that matches up with the accession I hope, is: (split(chr(1),$hit->description))[0] --Russell ======================================================================= Attention: The information contained in this message and/or attachments from AgResearch Limited is intended only for the persons or entities to which it is addressed and may contain confidential and/or privileged material. Any review, retransmission, dissemination or other use of, or taking of any action in reliance upon, this information by persons or entities other than the intended recipients is prohibited by AgResearch Limited. If you have received this message in error, please notify the sender immediately. ======================================================================= From pengyu.ut at gmail.com Tue Jun 29 22:41:28 2010 From: pengyu.ut at gmail.com (Peng Yu) Date: Tue, 29 Jun 2010 17:41:28 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] Message-ID: Hi, http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] The above search returns 2124 entries. I try to use the following bioperl code to do the search. I got an error (see below). Could anybody let me know how I should modify the bioperl search code to get the same results? #!/usr/bin/env perl use strict; use warnings; use Bio::DB::EUtilities; my $factory = Bio::DB::EUtilities->new( -eutil => 'esearch', -db => 'pubmed', -email => 'mymail at foo.bar', -term => 'anoxia[mh] and neoplasms[mh]', -retmode => 'xml', -retmax => 1000000, ); print $factory->get_retmax,"\n"; print $factory->get_Response->content; ############################ $ ./main.pl --------------------- WARNING --------------------- MSG: NCBI esearch Errors/Warnings: Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage [No items found.] --------------------------------------------------- 0 000 anoxia[mh] "anoxia"[MeSH Terms] +and+neoplasms[mh]No items found. -- Regards, Peng From cjfields at illinois.edu Tue Jun 29 23:15:15 2010 From: cjfields at illinois.edu (Chris Fields) Date: Tue, 29 Jun 2010 18:15:15 -0500 Subject: [Bioperl-l] EUtilities pubmed search with [Mesh Terms] In-Reply-To: References: Message-ID: <2864F3E9-8212-4DF9-A2DA-8AA1C2947F13@illinois.edu> Use uppercase with bools: 'anoxia[mh] AND neoplasms[mh]' This gives me 2124 hits. Note the URL you provided does that as well ...db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] chris On Jun 29, 2010, at 5:41 PM, Peng Yu wrote: > Hi, > > http://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=anoxia[mh]+AND+neoplasms[mh] > > The above search returns 2124 entries. I try to use the following > bioperl code to do the search. I got an error (see below). Could > anybody let me know how I should modify the bioperl search code to get > the same results? > > #!/usr/bin/env perl > > use strict; > use warnings; > use Bio::DB::EUtilities; > > my $factory = Bio::DB::EUtilities->new( > -eutil => 'esearch', > -db => 'pubmed', > -email => 'mymail at foo.bar', > -term => 'anoxia[mh] and neoplasms[mh]', > -retmode => 'xml', > -retmax => 1000000, > ); > > print $factory->get_retmax,"\n"; > print $factory->get_Response->content; > > ############################ > > $ ./main.pl > > --------------------- WARNING --------------------- > MSG: NCBI esearch Errors/Warnings: > Error : PhraseNotFound [+and+neoplasms[mh]]Warnings : OutputMessage > [No items found.] > --------------------------------------------------- > 0 > > 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd"> > 000 > anoxia[mh] > "anoxia"[MeSH Terms] > +and+neoplasms[mh]No > items found. > > -- > Regards, > Peng > _______________________________________________ > Bioperl-l mailing list > Bioperl-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/bioperl-l From cjfields at illinois.edu Wed Jun 30 17:35:51 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:35:51 -0500 Subject: [Bioperl-l] Seeking comments, Bio::Species memleak fix Message-ID: <1277919351.21543.66.camel@pyrimidine.igb.uiuc.edu> All, I have a branch in github (topic/species_proxy) that converts Bio::Species into a proxy class. This appears to fix a ton of problems introduced during the Tree/Taxonomy refactoring a few years back. Advantages: 1) No need for Scalar::Util::weaken within Bio::Species or Bio::Tree::Node. Cleanup methods are handled during instance destruction. 2) This paves the way a bit more for eventual deprecation of Bio::Species in 1.7. 3) Works with bioperl-db and BioSQL as is (passes on both my local Ubuntu 9.10 and Mac OS X 10.6), perl 5.10 and 5.12, should work with earlier perl versions. Disadvantages: 1) For every Bio::Species, we have a Bio::Taxon, a Bio::Tree::Tree, and a Bio::DB::Taxonomy (one instance more than the previous Bio::Species implementation). We can probably reduce that down considerably by creating the needed instances lazily. This fixes: bug 3017 use threads to get genbank file error bug 2594 Bio::Species memory leak and possibly others: bug 2773 Bio::Tree::Node gets destroyed even though it is still live If there are no comments, I'll merge this with the master branch in the next few days. ++++++++++++++++++++++++++++++++++++++++++ (NOTE: skip the next two paragraphs if you don't want to read nasty implementation details) Bio::Species had previously inherited from Bio::Taxon, but also required it to hold a Bio::Tree::Tree which contained a circular reference back to the Bio::Species object, thus requiring Scalar::Util::weaken. This has caused several hard-to-diagnose problems with premature garbage collection, including some issues with threads (bug 3017). The above proxy fix converts Bio::Species into a proxy class, which only inherits the interface (Bio::Tree::NodeI), and delegates to an internal Bio::Taxon and a Bio::Tree::Tree. Neither contained object has a reference back to the Bio::Species instance, thus the class can perform proper garbage collection. chris From cjfields at illinois.edu Wed Jun 30 17:47:39 2010 From: cjfields at illinois.edu (Chris Fields) Date: Wed, 30 Jun 2010 12:47:39 -0500 Subject: [Bioperl-l] Splitting out Bio::Microarray In-Reply-To: References: <0451267C-38F3-4732-992A-E0E5A5C9A44D@illinois.edu> Message-ID: <64DE1483-417A-4B78-9914-93260D04E90A@illinois.edu> On Jun 26, 2010, at 7:32 PM, Hilmar Lapp wrote: > > On Jun 25, 2010, at 9:44 AM, Chris Fields wrote: > >> I also suggest we eventually do the same for the PhyloNetwork modules down the line, and that we steer users who want to submit new publication-focused bioperl-reliant code into their own CPAN distributions. > > That makes sense. > > -hilmar Okay, I'll merge in the various branches. Marian, your code is currently in Bio-Microarray (can be renamed if needed). Thanks! chris