[Bioperl-l] How to parse DBLINK Project linetype in Genbank file

Chris Stubben stubben at lanl.gov
Wed Oct 21 15:29:03 UTC 2009


I have some Genbank files (from genome sequences) with a DBLINK line type
listing the Entrez genome project id.  Is there a way to parse this line?  
I can't seem to find it among the Annotation objects using bioperl 1.6.0
(printing all annotations or just dblinks below)

my @annotations = $so->annotation->get_Annotations('dblink');  # nothing

---
LOCUS       NC_001664             159322 bp    DNA     linear   VRL
16-OCT-2009
DEFINITION  Human herpesvirus 6A, complete genome.
ACCESSION   NC_001664
VERSION     NC_001664.2  GI:224020395
DBLINK      Project:14462
KEYWORDS    .
SOURCE      Human herpesvirus 6 (HHV-6A)


Thanks,

Chris Stubben
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