[Bioperl-l] Bioperl Entrez Esearch

Rajasekar Karthik karthik085 at gmail.com
Tue Jul 21 15:07:17 UTC 2009


Russell / Others,
The utilities keep printing out warnings and errors. Is there any way to
a) either not print at all
b) or send them to some other log file other than apache's error.log

Thanks.

On Wed, Jul 15, 2009 at 5:34 PM, Rajasekar Karthik <karthik085 at gmail.com>wrote:

> that helps - thanks!!!
>
>
> On Tue, Jul 14, 2009 at 6:33 PM, Smithies, Russell <
> Russell.Smithies at agresearch.co.nz> wrote:
>
>> You sure can.
>> Take a look at http://www.bioperl.org/wiki/HOWTO:EUtilities_Cookbook
>>
>>
>> --Russell
>>
>> > -----Original Message-----
>> > From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
>> > bounces at lists.open-bio.org] On Behalf Of Rajasekar Karthik
>> > Sent: Wednesday, 15 July 2009 10:23 a.m.
>> > To: bioperl-l at lists.open-bio.org
>> > Subject: [Bioperl-l] Bioperl Entrez Esearch
>> >
>> > Hi,
>> > I an new to Bioperl. How can I do an Entrez Esearch using Bioperl?
>> >
>> > For example, I want to do an exact title search in pubmed
>> > Title: Guidelines for quantitative rt-PCR
>> >
>> > Using HTTP Get, I would do something like this
>> > URL:
>> >
>> http://www.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&field=titl&te
>> > rm=Guidelines%20for%20quantitative%20rt-PCR
>> > to get the response XML.
>> >
>> > How can I use Bioperl to do the above action?
>> >
>> > Thanks.
>> >
>> > --
>> > Best Regards,
>> > Rajasekar Karthik
>> > karthik085 at gmail.com
>> > _______________________________________________
>> > Bioperl-l mailing list
>> > Bioperl-l at lists.open-bio.org
>> > http://lists.open-bio.org/mailman/listinfo/bioperl-l
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>
>
>
> --
> Best Regards,
> Rajasekar Karthik
> karthik085 at gmail.com
>



-- 
Best Regards,
Rajasekar Karthik
karthik085 at gmail.com



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