[Bioperl-l] About to tag the last RC...

[Chris Fields]

Yeah, the svggraph.t warning is something out of our control.  I  
googled the error and found it's a general problem with SVG::Graph, so  
I'll let Allen know.  I'll see if I can work out the other warning.

The HIV.t warnings are sporadic and seem less frequent since last  
night.  I noticed the HIV database migrated RDBMS yesterday so it may  
be related to that (Mark Jensen, the HIV modules author, is aware of  
the problem).

Thanks Dave!

-c

On Jan 14, 2009, at 3:53 AM, Dave Messina wrote:

> Test report on trunk r15372, perl 5.8.8, CentOS 5.2, install all  
> optional modules, install all scripts, do network tests.
>
> All passed -- just saw two minor warnings, one from  
> Bio::DB::Registry and the same svggraph one as before.
>
> Dave
>
>
>
>
> t/LocalDB/Registry.............................1/14
> --------------------- WARNING ---------------------
> MSG: Couldn't call new_from_registry() on [Bio::DB::Flat]
>
> ------------- EXCEPTION: Bio::Root::Exception -------------
> MSG: you must specify an indexing scheme
> STACK: Error::throw
> STACK: Bio::Root::Root::throw Bio/Root/Root.pm:357
> STACK: Bio::DB::Flat::new Bio/DB/Flat.pm:160
> STACK: Bio::DB::Flat::new_from_registry Bio/DB/Flat.pm:252
> STACK: Bio::DB::Registry::_load_registry Bio/DB/Registry.pm:164
> STACK: Bio::DB::Registry::new Bio/DB/Registry.pm:95
> STACK: t/LocalDB/Registry.t:51
> -----------------------------------------------------------
>
> ---------------------------------------------------
> t/LocalDB/Registry.............................ok
>
>
>
> t/Tree/TreeIO/svggraph.........................1/4 Use of  
> uninitialized value in join or string at /afs/pdc.kth.se/home/d/ 
> dmessina/lib/perl5/site_perl/5.8.8/SVG/Element.pm line 1195, <GEN0>  
> line 1.
> t/Tree/TreeIO/svggraph.........................ok
>
>
>
> All tests successful.
> Files=322, Tests=20356, 545 wallclock secs ( 5.25 usr  0.87 sys +  
> 173.39 cusr 26.97 csys = 206.48 CPU)
> Result: PASS
>
>