[Bioperl-l] Parser: Ace file (Sequence Assembly) in Bioperl

Abhishek Pratap abhishek.vit at gmail.com
Tue Jan 6 00:42:56 EST 2009

Hi All

I am looking for some code to parse the ACE file format. I have big ACE
files which I would like to trim based on the user defined Contig name and
specific region and write out the output to another fresh ACE file.

For now I am trying to tweak Bio::Assembly::IO; but it is kind of slow. Any
other alternative or suggestions.

Thanks All,

Abhishek Pratap
Bioinformatics Software Engineer
Institute for Genome Sciences
School of Medicine, Univ of Maryland
801, W. Baltimore Street, Baltimore, MD 21209
Ph: (+1)-410-706-2296

ISCB-Student Council


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