[Bioperl-l] Is Bio::KEGG:Enzyme implemented?

[Mark A. Jensen]

hey Bryan, 

I got started here by following carefully the strictures at
http://www.bioperl.org/wiki/Advanced_BioPerl
and other relevant pages on the wiki--

(the dopamine idea is quite cool, btw)
cheers, 
Mark
----- Original Message ----- 
From: "Bryan Bishop" <kanzure at gmail.com>
To: "Chris Fields" <cjfields at illinois.edu>; <kanzure at gmail.com>
Cc: <bioperl-l at lists.open-bio.org>
Sent: Wednesday, February 25, 2009 10:10 AM
Subject: Re: [Bioperl-l] Is Bio::KEGG:Enzyme implemented?


On Wed, Feb 25, 2009 at 9:05 AM, Chris Fields <cjfields at illinois.edu> wrote:
> No, that's for KEGG sequence records. We would gladly welcome anything
> towards integrating KEGG file parsing within bioperl; I'm interested in it
> myself (working with microarray data).

You can find this download here: (23 MB)
http://heybryan.org/~bbishop/docs/dopamine/enzyme

Skeleton "enzyme" file parser:
http://heybryan.org/~bbishop/docs/dopamine/parseenzyme.pl

I'd be willing to contribute parseenzyme.pl to the project once I'm
done, but I've never packaged a perl module, and I'm not sure if it
would be a better idea to follow the internal bioperl conventions
[which I am completely unaware of] for coding standards and other
purposes. Thoughts?

- Bryan
http://heybryan.org/
1 512 203 0507

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