[Bioperl-l] function for duplication events?

[K. Shameer]

Hi Chrysanthi,

You can create/visualize a tree by parsing a file (for example newick
format). Hope the HOWTO:Trees section will help you to kick start
http://www.bioperl.org/wiki/HOWTO:Trees

If you are looking for feature-rich visualization, you can try Phyloxml
http://www.bioperl.org/wiki/Phyloxml_Project_Demo

I am not sure about the function to identify duplication events. Can you
elaborate a bit on what you are looking for ?

Cheers,
Khader Shameer


> Hi,
>
> I was wondering if there is a method in order to visualize a tree by
> parsing
> a format and also, I would like to identify the duplication events.
> Are there any functions that will give me the duplication events?
>
> thanks a lot,
>
> Chrysanthi
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