[Bioperl-l] Problems with Bioperl-ext package on WinVista?

Mark A. Jensen maj at fortinbras.us
Tue Aug 11 19:22:42 UTC 2009


Jonny,
You need the HMMER application, which is not part of BioPerl.
See http://hmmer.janelia.org/ for download options.
MAJ
----- Original Message ----- 
From: "Jonny Dalzell" <jdalzell03 at qub.ac.uk>
To: <Bioperl-l at lists.open-bio.org>
Sent: Tuesday, August 11, 2009 2:52 PM
Subject: Re: [Bioperl-l] Problems with Bioperl-ext package on WinVista?


>
> Hi,
>
> I'm as sure as I can be.  I look in the HHMER folder and it contains
> "Domain.pm", "Results.pm", and "Set.pm".  I thought perhaps it was something
> to do with @INC, but I put
> "use lib "strawberry/per/lib C:/strawberry/perl/site/lib/Bio/Tools/";" at
> the top of my script, which definately encompasses the directory it should
> be in, and I still get...
>
> "Can't locate Bio/Tools/HMM.pm in @INC (@INC contains: strawberry/per/lib
> C:/strawberry/perl/site/lib/
> Bio/Tools/ C:/strawberry/perl/lib C:/strawberry/perl/site/lib .) at HMM.txt
> line 5.
> BEGIN failed--compilation aborted at HMM.txt line 5."
>
> I'm out of ideas.
>
> Jonny
> -- 
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>
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