[Bioperl-l] Bio::Tools::Run::StandAloneNCBIBlast - blastpgp

[Scott Markel]

Estelle,

Are you using the most recent version of Bio::Tools::Run::StandAloneNCBIBlast?

The available blastpgp parameters are

our @BLASTPGP_PARAMS = qw(A B C E F G H I J K L M N O P Q R S T U W X Y Z a b c e f h j k l m q s t u v y z);

See line 94.

Scott

Scott Markel, Ph.D.
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> -----Original Message-----
> From: bioperl-l-bounces at lists.open-bio.org [mailto:bioperl-l-
> bounces at lists.open-bio.org] On Behalf Of Chris Fields
> Sent: Thursday, 09 April 2009 9:34 PM
> To: Estelle Proux
> Cc: BioPerl List
> Subject: Re: [Bioperl-l] Bio::Tools::Run::StandAloneNCBIBlast - blastpgp
> 
> Estelle,
> 
> Always direct your questions to the bioperl mail list (I'm cc'ing them
> now).  I'm not sure about using that option, maybe someone else can
> answer?
> 
> chris
> 
> On Apr 7, 2009, at 5:08 AM, Estelle Proux wrote:
> 
> > Dear Mr Fields,
> >
> > I would like to use the module Bio::Tools::Run::StandAloneNCBIBlast
> > to run
> > blastpgp.
> > However, the -C option (save a checkpoint in ASN.x) seems not
> > available in
> > this module (options are -j, -h, -c, -B, and -Q). Is there another
> > way to
> > save the checkpoint?
> >
> > I thank you by advance (and apologize for my English).
> >
> > Estelle
> 
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