[Bioperl-l] Help : Imagemaps using Bio::Graphics

[Lincoln Stein]

The width of the image is determined by the -width attribute and is given in
pixels. You cannot control the height of the image as it is computed
dynamically based on the number of features and bumping options.

Lincoln

On 5/1/07, Shameer Khadar <shameer at ncbs.res.in> wrote:
>
> Dear Scot,
>
> > There is a fair amount of documentation in the perldoc for
> > Bio::Graphics::Panel under the section called 'Creating Imagemaps'; have
> > you read that?
>
> I agreed, but I couldnt the exact information I needed :( (may be I missed
> something important).
>
> >  Also, for changing the scale, that should happen
> > automatically--have you tried yet?
>
> I tried by changing the Lincoln's program eg: blast3.pl
> my $full_length = Bio::SeqFeature::Generic->new(-start=>1,-end=>1000);
> to my
> $full_length = Bio::SeqFeature::Generic->new(-start=>1,-end=>300);
>
> But it had given me a smaller scale of length upto 300. I was looking for
> an option where I need same width and height of given image and a dynamic
> start and end values depending on length of my sequence. Since I couldnt
> accomplish, I thought of getting some help from you guys. I think I need
> to play a little bit with the value for reformat the scale to accomodate
> my hits as well.
>
> Thanks a lot for your inputs,
> --
> Shameer Khadar
> Lab (# 25) The Computational Biology Group
> National Centre for Biological Sciences (TIFR)
> GKVK Campus, Bellary Road, Bangalore - 65, Karnataka - India
> T - 91-080-23666001 EXT - 6251
> W - http://www.ncbs.res.in
>
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>



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Lincoln D. Stein
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