[Bioperl-l] run megablast

[Chris Fields]

StandAloneBlast runs the megablast executable directly, though I  
think you can specify a MegaBlast search using blastall with the '-n'  
flag.

We could probably add this functionality in fairly easily since  
SearchIO can parse megablast output; no one's had the need to code it  
yet.

chris

On Jul 18, 2007, at 4:32 AM, Georg Otto wrote:

>
> Hi,
>
> is there a module to run megablast in a script (equivalent to ncbi
> blast in StandAloneBlast.pm)?
>
> Cheers,
>
> Georg
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

Christopher Fields
Postdoctoral Researcher
Lab of Dr. Robert Switzer
Dept of Biochemistry
University of Illinois Urbana-Champaign