[Bioperl-l] ClustalW on Bioperl

[Yuval Itan]

Dear all,

I need to align a few hundred sequence pairs using ClustalW, with 
output given in pir or gde format.
I would appreciate any suggestion of how to do that using Bioperl, and 
if Bioperl has parsing options for the ClustalW output.

Thanks a lot,

Yuval