[Bioperl-l] Blast parser.

[JK (Jesper Agerbo Krogh)]

Hi. 

I've tried to use the blast-parser but I cannot get the original alignment
out of the parser. Is it possible to get that out of the 
Bio::Search::HSP::BlastHSP in some way. It seems quite odd to get a
clustalw alignment out when it isn't that type of alignment people are
used to get from blast. 

Thanks 

Jesper