[Bioperl-l] Bug: swiss.pm doesn't parse seq_version

Michael Rogoff miker at biotiquesystems.com
Mon May 22 23:56:52 UTC 2006


As best as I can tell, using Bio::SeqIO to parse a uniprot file ignores the
sequence version, and calling seq_version() on the resulting RichSeq object
returns undef.

It looks like swiss.pm is trying to parse the version out of the SV line, which
apparently doesn't exist any more?  The sequence version(s) are now specified as
part of the Date (DT) lines.  

Is this not a bug?  Is swiss.pm not designed to parse uniprot files?

Thanks for any help ...





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