[Bioperl-l] _READMETHOD default

[Jason Stajich]

its a synonym.

if ($self->_READMETHOD =~ /^(Blast|SearchIO)/i )  {
                 $blast_obj = Bio::SearchIO->new(-file=> 
$outfile, .... );
}

On Mar 11, 2006, at 11:02 AM, Brian Osborne wrote:

> bioperl-l,
>
> I don’t pay much attention to StandAloneBlast.pm but I was  
> surprised to see
> this in the latest version:
>
>     $DEFAULTREADMETHOD = 'BLAST';
> Shouldn’t that be ‘SearchIO’?
>
> Brian O.
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l

--
Jason Stajich
Duke University
http://www.duke.edu/~jes12