[Bioperl-l] Substitution models
rvosa at sfu.ca
Fri Mar 3 02:10:36 EST 2006
unless I've missed it, there doesn't seem to be an object for nucleotide
substitution models. I'd like to implement one. I've attached an example
implementation (which needs further methods, tests and pod, obviously).
I'd like to solicit the input of the bioperl-architecture gurus on
whether the general design of this sample is sane.
The idea is that you would use this to serialize model descriptions
between e.g. MrBayes and Paup (which describe the same concepts, but
with slightly different syntax).
Rutger Vos, PhD. candidate
Department of Biological Sciences
Simon Fraser University
8888 University Drive
Burnaby, BC, V5A1S6
Personal site: http://www.sfu.ca/~rvosa
FAB* lab: http://www.sfu.ca/~fabstar
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