[Bioperl-l] Location mapping question

[Sean Davis]

I think I have seen code to do this kind of thing--hence this email--but I
may be mistaken.  I have oligo sequences mapped to mRNAs by blat and have
blat alignments to the genome.  Is there a way to quickly align the oligos
to the genome given this information using a bioperl module.  (Like I said,
I just can't seem to find it).

Thanks,
Sean