[Bioperl-l] gff2genbank

mail2doreen at gmx.de mail2doreen at gmx.de
Sun Mar 13 06:54:49 EST 2005


Hello,

i convert a gff file into genbank format using 

Bio::Tools::GFF
Bio::SeqIO

but the cds data in the output are not joined.

CDS             complement(17262..17813)
                     /gene_id="899.t00001"
                     /transcript_id="899.m00029"
CDS             complement(17879..18174)
                     /gene_id="899.t00001"
                     /transcript_id="899.m00029"
This is what i need:

CDS             complement(join(17262..17813,17879..18174)).
How can i solve this problem?

Greetings


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