[Bioperl-l] staden package building problem

xuying xuying at sibs.ac.cn
Mon Jun 6 03:45:31 EDT 2005


Hi all:
	When I was compiling the staden package, it aborted with the follow messages.
............
Makefile:73: warning: overriding commands for target `clean'
mk/global.mk:256: warning: ignoring old commands for target `clean'
Makefile:88: warning: overriding commands for target `depend'
mk/global.mk:515: warning: ignoring old commands for target `depend'
Makefile:128: warning: overriding commands for target `distsrc'
mk/global.mk:494: warning: ignoring old commands for target `distsrc'
cd Misc && make   all
make[1]: Entering directory `/home/xuying/staden-src-1-5-3/src/Misc'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/xuying/staden-src-1-5-3/src/Misc'
cd io_lib && make   all
make[1]: Entering directory `/home/xuying/staden-src-1-5-3/src/io_lib'
Makefile:129: dependencies: No such file or directory
Makefile:161: warning: overriding commands for target `distsrc'
../mk/global.mk:494: warning: ignoring old commands for target `distsrc'
cc -L../lib/linux-binaries  -shared -o ../lib/linux-binaries/libread.so  read/linux-binaries/Read.o read/linux-binaries/translate.o read/linux-binaries/scf_extras.o utils/linux-binaries/find.o utils/linux-binaries/mach-io.o utils/linux-binaries/traceType.o utils/linux-binaries/read_alloc.o utils/linux-binaries/compress.o utils/linux-binaries/open_trace_file.o scf/linux-binaries/read_scf.o scf/linux-binaries/write_scf.o scf/linux-binaries/misc_scf.o exp_file/linux-binaries/expFileIO.o plain/linux-binaries/seqIOPlain.o abi/linux-binaries/fpoint.o abi/linux-binaries/seqIOABI.o alf/linux-binaries/seqIOALF.o ctf/linux-binaries/ctfCompress.o ctf/linux-binaries/seqIOCTF.o ztr/linux-binaries/compression.o ztr/linux-binaries/ztr_translate.o ztr/linux-binaries/ztr.o  -lz   -lmisc 
cd progs && make
make[2]: Entering directory `/home/xuying/staden-src-1-5-3/src/io_lib/progs'
Makefile:84: dependencies: No such file or directory
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/xuying/staden-src-1-5-3/src/io_lib/progs'
make[1]: Leaving directory `/home/xuying/staden-src-1-5-3/src/io_lib'
cd tk_utils && make   all
make[1]: Entering directory `/home/xuying/staden-src-1-5-3/src/tk_utils'
Makefile:123: warning: overriding commands for target `distsrc'
../mk/global.mk:494: warning: ignoring old commands for target `distsrc'
ln -s ../licence/boxes.h .
ln: `./boxes.h': File exists
make[1]: *** [.links] Error 1
make[1]: Leaving directory `/home/xuying/staden-src-1-5-3/src/tk_utils'
make: *** [tk_utils] Error 2


What's the problem? I just installed the exact external package required manually. Please help!!!
	

Best Regards!
 				

¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡xuying
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡xuying at sibs.ac.cn
¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡2005-06-06



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