[Bioperl-l] Getting nucleotide seq from protein accession

Stefan Kirov skirov at utk.edu
Fri Jul 1 14:46:54 EDT 2005


Yup,
It's always useful to read the manual first. But it is not as much fun :-) .
Stefan

Jason Stajich wrote:

> Did you try the FAQ?
>
> http://www.bioperl.org/Core/Latest/faq.html#Q5.4
>
>
> On Jun 23, 2005, at 1:30 PM, Kat Hull wrote:
>
>> Hi there,
>> I was wondering whether anyone has a solution to my problem. I have  
>> a list of protein assession numbers and want to retrieve the  
>> corresponding nucleotide sequences automatically.  I thought it  
>> would be possible to do this by changing the NCBI url, but this  
>> doesn't seem to be the case.
>> Is there a bio-perl module that can do this?
>>
>> Kind regards,
>> Kat
>>
>> _______________________________________________
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>> Bioperl-l at portal.open-bio.org
>> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>>
>
> -- 
> Jason Stajich
> Duke University
> http://www.duke.edu/~jes12/
>
>
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