[Bioperl-l] primer3 install on Mac OS 10.3.5

Thomas J Keller kellert at ohsu.edu
Thu Sep 16 15:22:10 EDT 2004


Sorry if this isn't strictly bioperl.
I'm installing primer3 but got the following error:

$ make primer3_core
gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 
primer3_main.c
gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 
primer3.c
primer3_release.h:3: warning: `pr_release' defined but not used
gcc -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2   -c -o oligotm.o oligotm.c
primer3_release.h:3: warning: `pr_release' defined but not used
gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 
-o dpal_primer.o dpal.c
primer3_release.h:3: warning: `pr_release' defined but not used
gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 
-o format_output.o format_output.c
gcc -c -g -Wall -D__USE_FIXED_PROTOTYPES__ -include 
/usr/include/sys/types.h -O2 -DDPAL_MAX_ALIGN=36 -DMAX_PRIMER_LENGTH=36 
-o boulder_input.o boulder_input.c
primer3_release.h:3: warning: `pr_release' defined but not used
gcc -g -o primer3_core primer3_main.o primer3.o oligotm.o dpal_primer.o 
format_output.o boulder_input.o '-static' -lm
ld: can't locate file for: -lcrt0.o
make: *** [primer3_core] Error 1


I'm running Mac OS X 10.3.5

Thanks for any suggestions,
Tom Keller

Tom Keller, Ph.D.
http://www.ohsu.edu/research/core
kellert at ohsu.edu
503-494-2442
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