[Bioperl-l] Error message.

Thomas J Keller kellert at ohsu.edu
Thu Sep 16 12:00:23 EDT 2004


The message I received had html markup (>) within the perl. I don't 
know if it's present in his program. Obviously if it is, it is a syntax 
error.

>>
>> my $in = new Bio::AlignIO ( -file => $ARGV[0], -format => 
>> 'clustalw' );
>>
>> my $out = newFh Bio::AlignIO ( -fh => \*STDOUT, -format => 
>> 'clustalw' );
>>
>> my $aln = $in->next_aln();
>>
>>
vs

> my $in = new Bio::AlignIO ( -file => $ARGV[0], -format => 'clustalw' );
>
> my $out = newFh Bio::AlignIO ( -fh => \*STDOUT, -format => 'clustalw' 
> );
>
> my $aln = $in->next_aln();

Could it be that simple?
good luck,
Tom Keller




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