[Bioperl-l] Error message.

[Sun, Jian]

Dear all:

  Could anybody tell me what's the problem of the below perl codes, why I always get the Syntax Error message when I run the command:> perl -c file.name?

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my $in = new Bio::AlignIO ( -file => $ARGV[0], -format => 'clustalw' );

my $out = newFh Bio::AlignIO ( -fh => \*STDOUT, -format => 'clustalw' );

my $aln = $in->next_aln();

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________________________________

From: bioperl-l-bounces at portal.open-bio.org on behalf of Pankaj
Sent: Wed 9/15/2004 3:40 AM
To: bio_bulletin_board at bioinformatics.org
Cc: bioperl-l at portal.open-bio.org
Subject: [Bioperl-l] (no subject)



Hi all,
I have a pdb file of 2 superimposed structures. I want to know the
rmsd of a part of 1 structure to a part of the 2 structure. For this
rmsd calculation I dont want to disturb the superimposition. how do I
do that?
thanking all in advance
Pankaj Kamra
Research Scholar
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