[Bioperl-l] Attention: upcoming BioPerl 1.5 developer's release

[Jason Stajich]

On Sep 30, 2004, at 8:32 PM, James Thompson wrote:

> I've run the a "make test" on my CVS version of bioperl-live on a Sun  
> E450
> running Solaris 8 and Perl 5.8.5, here's the summary output:
>
> Failed Test      Stat Wstat Total Fail  Failed  List of Failed
> ----------------------------------------------------------------------- 
> --------
> t/CodonTable.t                 40    4  10.00%  41-44
> t/DB.t                         78    2   2.56%  34 39
> t/ProtMatrix.t                 15    4  26.67%  12-15
>
Hey James - isn't this your module - you need to implement get_string()  
in ProtMatrix.

> t/Registry.t      255 65280     6    3  50.00%  5-6
> t/RootStorable.t    2   512    34   56 164.71%  7-34
> t/SeqIO.t           2   512   270  386 142.96%  78-270
> t/SeqStats.t                   28    9  32.14%  10-12 21-24 26 28
fixed, needed to round
> t/SimpleAlign.t   255 65280    61   16  26.23%  54-61
> t/splicedseq.t                  9    4  44.44%  3 5-6 9
fixed
> 111 subtests skipped.
>
> I have more detailed output if anyone wants it.
>
> Cheers,
>
> James
>
> On Thu, 30 Sep 2004, Aaron J. Mackey wrote:
>
>>
>> With much-appreciated help from Steve Chervitz and Allen Day, there's
>> about to be a real push towards a 1.5 developer's release; as such, I
>> highly encourage all module authors/maintainers to get in those
>> documentation updates and finish any functionalities you've only
>> "stubbed" in place.  I'm not yet declaring a freeze, but don't be
>> surprised if I do so soon ...
>>
>> I have a pretty good idea of the new things that have gone in since
>> 1.4, but it wouldn't hurt you to drop me a private line about any
>> significant new functionality, changed API or bug fixes you've done
>> since the 1.4 releases.  You should also check the AUTHORS file and
>> make sure your contact and attribution information is listed as you so
>> desire.
>>
>> Now is also the time for you with "odd" systems (for me that means  
>> Sun,
>> SGI, and any Windows) to give the bioperl-live CVS checkout a full  
>> make
>> test, and to post your results (preferably only the stuff that didn't
>> work).  If you can provide a patch, even better!
>>
>> I hope to have a release candidate available by the end of next week,
>> with the real thing following very shortly thereafter (unless there  
>> are
>> show-stoppers, of course)
>>
>> Thanks,
>>
>> -Aaron
>>
>> --
>> Aaron J. Mackey, Ph.D.
>> Dept. of Biology, Goddard 212
>> University of Pennsylvania       email:  amackey at pcbi.upenn.edu
>> 415 S. University Avenue         office: 215-898-1205
>> Philadelphia, PA  19104-6017     fax:    215-746-6697
>>
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>>
>
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>
--
Jason Stajich
jason.stajich at duke.edu
http://www.duke.edu/~jes12/