[Bioperl-l] Gbrowse/BioSQL question

Marc Logghe Marc.Logghe at devgen.com
Mon May 24 02:58:52 EDT 2004



> -----Original Message-----
> From: Hilmar Lapp [mailto:hlapp at gmx.net]
> Sent: maandag 24 mei 2004 4:45
> To: Sean Davis
> Cc: Bioperl; gmod-gbrowse at lists.sourceforge.net
> Subject: Re: [Bioperl-l] Gbrowse/BioSQL question
> 
> 
> Just FYI, the changes I just committed should allow the version to be 
> omitted when querying by the (accession,version,namespace) 
> unique key. 
> It will match whatever version you have, and you'll obviously get an 
> exception if multiple match.
> 
> I'm not sure which query API the Gbrowse/Biosql adaptor uses (unique 
> key or general query?). Simon?
I changed that to general query, because sometimes it is useful to return multiple versions of the same accession.
At least this way you don't get an exception when you have a multiple match According to the gbrowse API, you get a list of matches.
ML



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