[Bioperl-l] Bio::AlignIO::po

[Heikki Lehvaslaiho]

Matthew,

The list does not accept attachments. 

The recommended way of submitting new code is to open a bioperl bugzilla entry 
and label it "enhancement" (in "Severity"): http://bugzilla.bioperl.org/. Put 
the code into an attachment and a mail to bioperl-l list to discuss it.


Thanks,

	-Heikki

On Tuesday 23 Mar 2004 16:13, Matthew Betts wrote:
> Hi,
>
> I've finally written the Bio::AlignIO:po module I mentioned way back in
> November. I'm unsure of the procedure for submitting it (I've looked at
> the FAQ). Should I just post it as an attachment to bioperl-l?
>
> Also, I'm trying to think of some sensible tests, and have been looking at
> AlignIO.t. The ones in there mainly seem to test that a sequence read in
> from an example alignment has the correct name. Should I test more than
> that? All suggestions very welcome.
>
> Thanks in advance for your help,
>
> Matthew
>
> On Thu, 13 Nov 2003, Jason Stajich wrote:
> > One does not exist - would be happy for you to write one.
> > AlignIO::clustalw or fasta would be good templates.
> > An AlignIO pir parser wouldn't be too bad either if you get into it.
> >
> > -jason
> >
> > On Thu, 13 Nov 2003, Matthew Betts wrote:
> > > Hei,
> > >
> > > Does anyone have a PO format reader for AlignIO? This is the native
> > > output format for POA. It can also output in pir or clustalw, so it's
> > > not a big problem. But I'd quite like to try to try my hand at writing
> > > the parser if one doesn't exist already...
> > >
> > > Thanks,
> > >
> > > Matthew
> >
> > --
> > Jason Stajich
> > Duke University
> > jason at cgt.mc.duke.edu

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     _/  _/  _/  Heikki Lehvaslaiho    heikki_at_ebi ac uk
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