[Bioperl-l] How to get the PSSm from blastpgp or PSI-Blast run

Huzefa Rangwala rangwala at cs.umn.edu
Mon Mar 15 18:29:44 EST 2004


Hello

Is there any command by which I can get the PSSM(Position Specific Scoring
Matrices) in ASCII format. Note blastpgp with -C option creates the matrix
in binary.

Regards
Huzefa

--------------------------------------------------------------------------
Huzefa Rangwala		   	   Email:rangwala at cs.umn.edu
Research Assistant,		   Tel: 612-625-3796
Dept. of Computer Sci & Engg.	   URL: http://www.cs.umn.edu/~rangwala
University of Minnesota
--------------------------------------------------------------------------





More information about the Bioperl-l mailing list