[Bioperl-l] Chou-Fasman

[Aaron J. Mackey]

You could try:

http://fasta.bioch.virginia.edu/fasta_www/chofas.htm

I believe this particular "chofas" algorithm is included in the older 
FASTA2 package:

ftp://ftp.virginia.edu/pub/fasta/fasta2.shar.Z

-Aaron

On Jul 19, 2004, at 11:34 PM, mark.schreiber at group.novartis.com wrote:

> Hello -
>
> Does anyone have an example of applying chou fasman parameters to
> predicting the most probable secondary structure?
>
> Mark Schreiber
> Principal Scientist (Bioinformatics)
>
> Novartis Institute for Tropical Diseases (NITD)
> 10 Biopolis Road
> #05-01 Chromos
> Singapore 138670
> www.nitd.novartis.com
>
> phone +65 6722 2973
> fax  +65 6722 2910
>
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
>
>
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697