[Bioperl-l] Bio::SeqIO::staden::read problem

[Aaron J. Mackey]

You should comment out line 316 of /usr/lib/perl5/5.8.0/Bio/SeqIO.pm to  
read:

 sub BEGIN {
 #    eval { require Bio::SeqIO::staden::read; };
 }

This is one of those things that we can't seem to agree on (some  
installations seem to require this eval, other's fail when we use it).

-Aaron

On Dec 17, 2004, at 11:39 PM, xuying wrote:

> all output is in the attached file "out.make.ext".
>>
>>
>> xuying wrote:
>>
>>> Running make install
>>> make[1]: Entering directory  
>>> `/root/.cpan/build/bioperl-ext-1.4/Bio/Ext/Align'
>>> make[1]: Leaving directory  
>>> `/root/.cpan/build/bioperl-ext-1.4/Bio/Ext/Align'
>>> make[1]: Entering directory  
>>> `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden'
>>> make[1]: Leaving directory  
>>> `/root/.cpan/build/bioperl-ext-1.4/Bio/SeqIO/staden'
>>> Installing /usr/share/man/man3/Bio::SeqIO::staden::read.3pm
>>> Writing  
>>> /usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi/auto/Bio/ 
>>> .packlist
>>> Appending installation info to  
>>> /usr/lib/perl5/5.8.0/i386-linux-thread-multi/perllocal.pod
>>>   /usr/bin/make install  -- OK
>>
>> No, this doesn't look entirely correct; more files should be listed as
>> being installed/written to.  From within the CPAN shell, type "look
>> Bio::SeqIO::staden" to drop into a subshell, then do a make clean, and
>> start over with perl Makefile.PL, make, make test, make install; send  
>> me
>> all the output.
>>
>> -Aaron
>>
>>
>
> = = = = = = = = = = = = = = = = = = = =
> 			
>
> 　　　　　　　　致
> 礼！
>
> 				
> 　　　　　　　　xuying
> 　　　　　　　　xuying at sibs.ac.cn
> 　　　　　　　　　　2004-12-18
>
> <out.make.ext>_______________________________________________
> Bioperl-l mailing list
> Bioperl-l at portal.open-bio.org
> http://portal.open-bio.org/mailman/listinfo/bioperl-l
--
Aaron J. Mackey, Ph.D.
Dept. of Biology, Goddard 212
University of Pennsylvania       email:  amackey at pcbi.upenn.edu
415 S. University Avenue         office: 215-898-1205
Philadelphia, PA  19104-6017     fax:    215-746-6697