[Bioperl-l] Trouble install Bioperl-Ext-1.4 & dpAlign

Michal Galdzicki mgaldzic at gmail.com
Wed Aug 4 01:58:30 EDT 2004


I'm having the same problem discussed in June by jany (janynannan at
yahoo.co.uk) and Aaron J Mackey. 
(http://bioperl.org/pipermail/bioperl-l/2004-June/016154.html,
http://bioperl.org/pipermail/bioperl-l/2004-June/016153.html)

Could anyone point me to the solution.

During an install bioperl-ext-1.4 in Redhat9 with dpAlign.
The following error comes up on 'make test' (and later when skipped in
use dpAlign):

#########################################################
PERL_DL_NONLAZY=1 /usr/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl
1..9
# Running under perl version 5.008 for linux
# Current time local: Wed Aug  4 01:15:51 2004
# Current time GMT:   Wed Aug  4 05:15:51 2004
# Using Test.pm version 1.23
Not enough arguments for Bio::Ext::Align::Align_Protein_Sequences at
/usr/lib/perl5/site_perl/5.8.0/Bio/Tools/dpAlign.pm line 300, near
"'blosum62')"
Not enough arguments for Bio::Ext::Align::Align_Protein_Sequences at
/usr/lib/perl5/site_perl/5.8.0/Bio/Tools/dpAlign.pm line 355, near
"'blosum62')"
Compilation failed in require at test.pl line 15.
BEGIN failed--compilation aborted at test.pl line 15.
make: *** [test_dynamic] Error 255

###########################################################

Thank you,
Michal Galdzicki

ps. sorry if you received this twice


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