[Bioperl-l] codon useage modules

[Richard Adams]

Hi,
I'm writing a couple of modules for interrogating the codon usage
database s(http://www.kazusa.or.jp/codon/)
and retrieving its statistics;

Module 1 inherits from Bio::WebAgent and contacts the DB with a  species
query, gets the appropriate Codon Useage Table
and objectifies it.

Module 2 supplies the methods and just inherits from Bio::Root::Root but
uses modules like Bio::SeqUtils
and Bio::Tools::CodonTable quite heavily.

methods include e.g., $ct->get_rel_frequency('TGT'),
                                        $ct->get_aa_frequency('Leu'),
                                        $ct->preferred_codon('Arg'),
.
Any recommendations for where these modules should be put in the CVS?

Cheers

Richard


--
Dr Richard Adams
Bioinformatician,
Psychiatric Genetics Group,
Medical Genetics,
Molecular Medicine Centre,
Western General Hospital,
Crewe Rd West,
Edinburgh UK
EH4 2XU

Tel: 44 131 651 1084
richard.adams at ed.ac.uk