[Bioperl-l] How can i get tag Comments from Genbank file

Fabiola Sánchez fsanchez at cifn.unam.mx
Fri Nov 21 12:45:05 EST 2003


Hello!
i need your help
I'm reading  files in genbank format
i want to parser the second paragraph of  the COMMENT
how can i get this ?
for example
COMMENT     
------------------------------------------------------------------
            This SWISS-PROT entry is copyright. It is produced through a
            collaboration between the Swiss Institute of Bioinformatics and
            the EMBL outstation - the European Bioinformatics Institute. The
            original entry is available from http://www.expasy.ch/sprot and
            http://www.ebi.ac.uk/sprot
            
-----------------------------------------------------------------.
            [CATALYTIC ACTIVITY] An alcohol + NAD(+) = an aldehyde or 
ketone +
            NADH. [COFACTOR] Binds 1 zinc ion per subunit (By similarity).
            [SIMILARITY] Belongs to the zinc-containing alcohol 
dehydrogenase
            family.

I need get :
-----------------------------------------------------------------.
            [CATALYTIC ACTIVITY] An alcohol + NAD(+) = an aldehyde or 
ketone +
            NADH. [COFACTOR] Binds 1 zinc ion per subunit (By similarity).
            [SIMILARITY] Belongs to the zinc-containing alcohol 
dehydrogenase
            family.


Thank you.

Fabi


More information about the Bioperl-l mailing list