[Bioperl-l] Problem with Bio::SeqIO opening gzipped files

[Andreas Kahari]

On Fri, Nov 14, 2003 at 12:34:53PM +0200, Zayed Albertyn wrote:
> Hi Andreas
> 
> Adding the -c switch still doesnt work. I still get the same error
> message. Input is the full path to the file e.g.
> 
> /cip0/db/GENBANK/RELEASE137/gbest13.seq.gz  == $path/$file

Does the file "/cip0/db/GENBANK/RELEASE137/gbest13.seq.gz"
exist or was it uncompressed into
"/cip0/db/GENBANK/RELEASE137/gbest13.seq" when you ran the
program which didn't use '-c' with gunzip?



Andreas

-- 
|)()(|      Andreas Kähäri                                |{}{}|
|()()|      EMBL, European Bioinformatics Institute       |}{}{|
|)()(|      Wellcome Trust Genome Campus, Hinxton         |{}{}|
|()()|      Cambridge, CB10 1SD                           |}{}{|
|)()(|      United Kingdom                                |{}{}|