[Bioperl-l] Fixed the previously reported BLAST query length issue

[Matthew Vaughn]

If anyone cares to try it out, I fixed the bug I mentioned in my 
previous email. The problem is in the module Bio::SearchIO::blast.pm in 
the method next_result.  Change the following line

while( defined ($_) && $_ !~ /^\s+$/ ) {

to

while( defined ($_) && $_ !~ /^Database/ ) {

This seems to fix the issue without breaking other functionality.

Regards,

Matt

--
Matthew W. Vaughn, Ph.D.
Cold Spring Harbor Laboratory
Delbruck Laboratory / Martienssen Group
1 Bungtown Road
Cold Spring Harbor, NY 11724

phone: (516) 422-4128