[Bioperl-l] Sequence Affinity and Dimer/Hairpin formation

Brian Osborne brian_osborne at cognia.com
Thu Jan 30 07:54:57 EST 2003


Eric,

No, I don't think so, but you could use Bioperl to run the EMBOSS program
palindrome and capture its output.

Brian O.

-----Original Message-----
From: bioperl-l-bounces at bioperl.org [mailto:bioperl-l-bounces at bioperl.org]On
Behalf Of E Klee
Sent: Wednesday, January 29, 2003 1:04 PM
To: bioperl-l at bioperl.org
Subject: [Bioperl-l] Sequence Affinity and Dimer/Hairpin formation



I was wondering if there were any BioPerl modules that did prediction of
Dimer or Hairpin formations in a short oligo sequence.

-Eric

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