[Bioperl-l] problem with bioperl on UNIX

[Prachi Shah]

Hmmm....
Well, it never works for me. Is there a way to view
detailed error/rejection message received from
GenBank? That might give a better idea of what is
actually happening. All the error that I see right now
tells me that for some reason no results were
returned. But, knowing that reason might really help.

thanks,
Prachi.


--- Jason Stajich <jason at cgt.mc.duke.edu> wrote:
> It is possible genbank is/was rejecting queries - I
> am able to execute
> your query on a linux box.  I had trouble yesterday 
> trying to run your
> code though.  It is possible that GenBank was having
> problems when you
> last tried to execute your code.
> 
> #!/usr/bin/perl -w
> use strict;
> use Bio::DB::Query::GenBank;
> 
> my $query_string = 'Gallus gallus[organism]';
> 
> my $query = Bio::DB::Query::GenBank->new(-db   =>
> 'protein',
> 				      -query=>$query_string);
> my $count = $query->count;
> print "COUNT is $count\n";
> 
> I get:
> 
> COUNT is 7742
> 
> 
> -jason
> 

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