[Bioperl-l] blast Bio::Tools::Run::StandAloneBlast BlastFindWords returned non-zero status

[Guido Dieterich]

Hi,

i have a strange problem. I use
	
$factory = Bio::Tools::Run::StandAloneBlast->new('program'  => 'blastp', 
'outfile' => 'bl2seq.out');

$report = $factory->bl2seq($query2, $query1);

in case $query2->seq is "CMWDFDDXMPPADEDYSPWQLWLLA" Blast runs without 
warnings

in case $query2->seq is "CMWDFDDXMPPADEDYSPWQLWLLS" Blast warns
# last AA can also be T or G
[bl2seq] WARNING:  [000.000]  BlastFindWords returned non-zero status
[bl2seq] WARNING:  [000.000]  SetUpBlastSearch failed.

????????????

Thanks


Guido








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Dr. Guido Dieterich
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