[Bioperl-l] SeqIO BEGIN block kills Gbrowse

[Scott Cain]

Hi Mark,

I think this is a CGI.pm problem--Lincoln and I have gone back and forth
about this, but I seem to remember that the problem was fixed with an
update of CGI.pm.

Also, you might want to send/cc notes like this to the GBrowse list:
gmod-gbrowse at lists.sourceforge.net.

Thanks,
Scott


--- Original Message ---
Date: 12 Aug 2003 15:01:14 -0600
From: Mark Wilkinson <markw at illuminae.com>
Subject: [Bioperl-l] SeqIO BEGIN block kills Gbrowse
To: bioperl-l at bioperl.org
Message-ID: <1060722074.1709.106.camel at localhost.localdomain>
Content-Type: text/plain

Hi all,

Just a heads-up that the eval in the BEGIN block of SeqIO.pm mucks-up
the gbrowse CGI (apparently because the error message is printed to the
screen before the CGI header).  I suppose this is something that is best
fixed at the gbrowse end of the stick, but I thought I'd post a note
about it here anyway.  It it doesn't look like it will be an easy thing
to fix given the early point at which that line is going to execute...

M

-- 
Mark Wilkinson <markw at illuminae.com>
Illuminae
-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                         cain at cshl.org
GMOD Coordinator (http://www.gmod.org/)                     216-392-3087
Cold Spring Harbor Laboratory