[Bioperl-l] Isn't there Bio::Tools::Run for Phred

[Chad Matsalla]

> I would like to get consensus sequences from a lot of EST sequences.
> For this, I will use phred. By the way, Is there Bio::Tools::Run
> object for Phred?

Do you mean phrap?

If so, you can use Robson's Bio::Assembly::IO::phrap.

My systems are still using Bio::Tools::Alignment::Consed to parse
acefiles generated by phrap but I have the feeling that Robson's stuff
is more tied into the bioperl ways of doing things.

Hope that helps,

Chad Matsalla