[Bioperl-l] FASTA module

[Jason Stajich]

You should look at the existing code in the bioperl-run repository -- all
application wrappers live in there now.  Module should inherit from
Bio::Tools::Run::WrapperBase.

You should probably decide if you are going to build a generic toplevel
object and subclass for the various (T)FAST(XAY) and how you plan to deal
with different versions of fasta on the system since fasta33 is
named differently from fasta34.

You may want to propose some ideas before you start working on too much
code.  I would advise against just trying to clone StandAloneBlast as
things have become more generalized since it was written and it would be
helpful to continue this generalization trend.

-jason

On Fri, 27 Sep 2002, tiequan zhang wrote:

> I plan to write a FASTA-related module so that it can
> run FASTA program locally and remotely just as what
> Blast module does.if you have any suggestioon or
> updated information about it please email metiequan
> zhang
>
>
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu