Solved: Re: [Bioperl-l] SeqIO Error?

[Paul Boutros]

Oh, exactly the problem.  New versions of Root::Root and Root:RootI from
CVS fixed it.

Much appreciated -- I didn't realize running mixed versions could be
so problematic.

Paul


On Thu, 26 Sep 2002, Hilmar Lapp wrote:

> Sounds like a version mix problem ... _load_module() is defined in 
> Bio::Root::Root, but not in 1.0.x. Which version do you run?
> 
> 	-hilmar
> 
> On Thursday, September 26, 2002, at 02:55 PM, Paul Boutros wrote:
> 
> > Hi again,
> >
> > I've started getting an interesting SeqIO error.  Any ideas what 
> > this is?
> >
> > Is the statement:
> >     eval {
> >         $ok = $self->_load_module($module);
> >     };
> > Paul
> >
> > ===================================================================
> > use Bio::SeqIO;
> > $in  = Bio::SeqIO->new(-file => "test.fasta" , '-format' => 'Fasta');
> >
> > ===================================================================
> > Name "main::in" used only once: possible typo at localblast.pl line 4.
> > Bio::SeqIO: fasta cannot be found
> > Exception Can't locate object method "_load_module" via package
> > "Bio::SeqIO" (pe
> > rhaps you forgot to load "Bio::SeqIO"?) at 
> > C:/Perl/site/lib/Bio/SeqIO.pm
> > line 51
> > 7.
> >
> > For more information about the SeqIO system please see the SeqIO docs.
> > This includes ways of checking for formats at compile time, not run 
> > time
> >
> >
> >
> >
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l@bioperl.org
> > http://bioperl.org/mailman/listinfo/bioperl-l
> >
> --
> -------------------------------------------------------------
> Hilmar Lapp                            email: lapp at gnf.org
> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
> -------------------------------------------------------------
>