[Bioperl-l] Blast to gff

[Jason Stajich]

HSPs are features.  Hits are feature containers - we could implement it so
that Hits were more aware of their HSPs, but this then requires something
like tile_hsps or finding max/min HSP location for the set of HSPs.  I
really prefer that this be done explicitly by the programmer rather than
by us within the object unless people have strong feelings.

On Mon, 18 Nov 2002, Hilmar Lapp wrote:

> Hits are features, aren't they? If so you would do $hit->gff_string.
>
> 	-hilmar
>
> On Monday, November 18, 2002, at 11:02 AM, Wiepert, Mathieu wrote:
>
> > Hi,
> >
> > What's the simplest way to convert blast hits to gff?  I don't know
> > why I thought there was a method somewhere to do this, is there one?
> >
> > -Mat
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> >
> --
> -------------------------------------------------------------
> Hilmar Lapp                            email: lapp at gnf.org
> GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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-- 
Jason Stajich
Duke University
jason at cgt.mc.duke.edu